Query 004324
Match_columns 761
No_of_seqs 790 out of 4470
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 21:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-71 6.5E-76 654.4 53.7 538 88-657 128-735 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-67 6E-72 607.8 56.6 537 113-697 374-920 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.5E-72 610.9 52.1 524 144-725 368-917 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1E-66 2.2E-71 601.4 52.1 516 114-741 92-628 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.4E-66 7.4E-71 611.3 40.5 572 90-715 60-648 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-58 5E-63 532.0 42.9 450 142-657 83-537 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-25 1.1E-29 265.7 53.6 493 153-684 372-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.9E-23 4.2E-28 252.0 53.7 506 89-626 371-892 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.5E-18 3.3E-23 187.8 36.4 234 304-543 114-354 (389)
10 PRK11447 cellulose synthase su 99.8 3.7E-16 8E-21 190.2 54.1 370 305-692 277-747 (1157)
11 PRK11788 tetratricopeptide rep 99.8 1.4E-17 3E-22 180.3 36.1 305 153-508 44-354 (389)
12 KOG4626 O-linked N-acetylgluco 99.8 4.5E-17 9.7E-22 167.7 33.8 444 154-657 92-541 (966)
13 PRK11447 cellulose synthase su 99.8 1.1E-14 2.5E-19 177.2 51.4 482 119-626 122-732 (1157)
14 KOG4626 O-linked N-acetylgluco 99.8 2.1E-16 4.5E-21 162.8 27.9 414 154-627 58-478 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 7.3E-14 1.6E-18 159.7 49.3 325 153-499 136-495 (615)
16 PRK15174 Vi polysaccharide exp 99.8 5.4E-14 1.2E-18 160.2 47.9 369 153-546 51-430 (656)
17 TIGR00990 3a0801s09 mitochondr 99.8 5.2E-14 1.1E-18 160.9 47.4 391 184-626 131-563 (615)
18 PRK15174 Vi polysaccharide exp 99.7 6.9E-14 1.5E-18 159.4 44.3 329 185-536 47-381 (656)
19 PRK10049 pgaA outer membrane p 99.7 1.4E-13 3E-18 160.3 44.2 355 155-534 26-420 (765)
20 KOG4422 Uncharacterized conser 99.7 9.6E-13 2.1E-17 130.6 39.7 351 176-538 203-592 (625)
21 PRK10049 pgaA outer membrane p 99.7 1E-12 2.2E-17 153.1 47.0 376 153-552 58-470 (765)
22 PRK09782 bacteriophage N4 rece 99.7 7.3E-12 1.6E-16 146.1 47.5 357 153-535 191-637 (987)
23 KOG4422 Uncharacterized conser 99.6 4.8E-12 1E-16 125.7 37.8 316 153-501 124-463 (625)
24 PRK09782 bacteriophage N4 rece 99.6 3.8E-12 8.3E-17 148.4 43.5 462 123-626 58-664 (987)
25 PRK14574 hmsH outer membrane p 99.6 2.8E-11 6E-16 138.5 48.8 397 153-607 43-520 (822)
26 PRK14574 hmsH outer membrane p 99.6 1.3E-10 2.8E-15 133.0 49.5 365 153-535 111-512 (822)
27 KOG2002 TPR-containing nuclear 99.5 1.7E-09 3.6E-14 118.8 43.6 496 160-688 146-677 (1018)
28 KOG2002 TPR-containing nuclear 99.5 2.2E-09 4.8E-14 117.8 42.1 500 143-683 160-706 (1018)
29 PRK10747 putative protoheme IX 99.4 7.3E-10 1.6E-14 119.1 36.2 285 231-535 97-389 (398)
30 KOG0495 HAT repeat protein [RN 99.4 1.2E-07 2.6E-12 99.9 48.5 442 153-623 415-869 (913)
31 KOG2003 TPR repeat-containing 99.4 5E-09 1.1E-13 105.1 34.8 416 155-619 248-708 (840)
32 TIGR00540 hemY_coli hemY prote 99.3 4.6E-09 9.9E-14 113.6 35.7 288 230-534 96-397 (409)
33 KOG4318 Bicoid mRNA stability 99.3 9E-10 1.9E-14 119.3 29.3 500 138-690 17-598 (1088)
34 KOG2076 RNA polymerase III tra 99.3 1.8E-08 4E-13 110.1 38.8 323 194-534 153-510 (895)
35 PF13041 PPR_2: PPR repeat fam 99.3 2.8E-12 6.2E-17 92.5 6.6 49 365-413 1-49 (50)
36 PF13429 TPR_15: Tetratricopep 99.3 8.2E-12 1.8E-16 128.1 12.4 252 337-626 13-269 (280)
37 KOG2076 RNA polymerase III tra 99.3 2.6E-08 5.6E-13 108.9 39.2 365 156-535 151-554 (895)
38 PRK10747 putative protoheme IX 99.3 3.6E-09 7.8E-14 113.8 33.0 279 274-597 98-385 (398)
39 PF13429 TPR_15: Tetratricopep 99.3 1.1E-11 2.3E-16 127.3 12.9 252 230-496 20-273 (280)
40 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.9E-17 91.4 6.7 50 400-449 1-50 (50)
41 KOG1155 Anaphase-promoting com 99.3 1.2E-08 2.5E-13 103.4 33.0 286 301-626 231-528 (559)
42 KOG1155 Anaphase-promoting com 99.3 1.2E-07 2.6E-12 96.2 37.2 366 141-535 159-535 (559)
43 KOG0495 HAT repeat protein [RN 99.3 4.8E-07 1E-11 95.5 42.3 331 189-536 415-748 (913)
44 KOG1126 DNA-binding cell divis 99.3 7.2E-10 1.6E-14 117.3 21.9 273 312-626 334-612 (638)
45 TIGR00540 hemY_coli hemY prote 99.3 1.2E-08 2.7E-13 110.2 32.3 287 274-597 98-394 (409)
46 KOG2003 TPR repeat-containing 99.2 6.7E-08 1.5E-12 97.2 33.9 406 123-541 251-693 (840)
47 COG2956 Predicted N-acetylgluc 99.2 8E-08 1.7E-12 93.2 32.5 308 216-541 37-352 (389)
48 TIGR02521 type_IV_pilW type IV 99.2 1.6E-08 3.5E-13 100.4 27.4 200 332-535 31-231 (234)
49 COG2956 Predicted N-acetylgluc 99.2 5E-08 1.1E-12 94.5 28.7 305 310-658 48-362 (389)
50 KOG1126 DNA-binding cell divis 99.2 8.3E-09 1.8E-13 109.4 25.3 280 232-535 333-619 (638)
51 COG3071 HemY Uncharacterized e 99.2 9E-07 1.9E-11 88.8 37.1 285 231-535 97-389 (400)
52 COG3071 HemY Uncharacterized e 99.1 1.7E-07 3.8E-12 93.8 30.0 278 309-626 96-382 (400)
53 KOG1915 Cell cycle control pro 99.1 8.6E-06 1.9E-10 83.1 41.9 397 154-605 117-541 (677)
54 PRK12370 invasion protein regu 99.1 7E-08 1.5E-12 108.5 30.6 253 274-537 275-536 (553)
55 KOG4318 Bicoid mRNA stability 99.1 2E-08 4.4E-13 109.0 22.8 259 165-452 11-286 (1088)
56 TIGR02521 type_IV_pilW type IV 99.0 1.7E-07 3.6E-12 93.0 27.0 194 304-500 38-232 (234)
57 KOG0547 Translocase of outer m 99.0 7.9E-07 1.7E-11 91.0 30.6 403 153-626 124-558 (606)
58 KOG1840 Kinesin light chain [C 99.0 3.8E-07 8.2E-12 98.0 30.1 241 294-534 196-477 (508)
59 KOG1173 Anaphase-promoting com 99.0 7.1E-07 1.5E-11 93.0 30.0 288 328-656 240-530 (611)
60 KOG1129 TPR repeat-containing 99.0 2E-08 4.4E-13 97.0 16.8 236 370-640 226-463 (478)
61 KOG1915 Cell cycle control pro 99.0 6.5E-05 1.4E-09 76.9 41.1 390 156-601 85-499 (677)
62 PRK12370 invasion protein regu 98.9 3.8E-07 8.2E-12 102.6 28.0 214 311-535 275-501 (553)
63 PF12569 NARP1: NMDA receptor- 98.9 2.8E-06 6.1E-11 92.5 32.4 125 371-498 198-332 (517)
64 PF12569 NARP1: NMDA receptor- 98.9 8.3E-06 1.8E-10 88.9 34.9 296 150-465 10-333 (517)
65 KOG4162 Predicted calmodulin-b 98.9 2.7E-05 5.8E-10 84.5 36.3 397 176-626 319-775 (799)
66 KOG1174 Anaphase-promoting com 98.9 1.2E-05 2.7E-10 80.7 31.2 339 179-544 96-437 (564)
67 KOG0547 Translocase of outer m 98.8 2.4E-05 5.1E-10 80.5 33.3 398 120-597 126-561 (606)
68 KOG1840 Kinesin light chain [C 98.8 2.6E-06 5.5E-11 91.7 25.6 238 332-597 199-474 (508)
69 KOG1156 N-terminal acetyltrans 98.8 0.00013 2.8E-09 77.9 36.8 370 153-539 84-471 (700)
70 KOG1129 TPR repeat-containing 98.8 5.9E-07 1.3E-11 87.1 18.0 225 303-535 229-457 (478)
71 KOG1173 Anaphase-promoting com 98.8 1.1E-05 2.3E-10 84.5 28.4 281 179-517 243-532 (611)
72 PRK11189 lipoprotein NlpI; Pro 98.7 1.6E-05 3.5E-10 81.8 29.7 215 312-535 41-264 (296)
73 PRK11189 lipoprotein NlpI; Pro 98.7 1.3E-05 2.9E-10 82.5 29.0 231 273-514 39-277 (296)
74 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.8E-13 65.2 4.0 32 397-428 2-33 (34)
75 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 5.1E-13 64.6 4.4 32 466-497 2-33 (34)
76 cd05804 StaR_like StaR_like; a 98.7 0.00011 2.4E-09 78.3 34.6 200 335-535 117-335 (355)
77 KOG3616 Selective LIM binding 98.7 7.3E-05 1.6E-09 80.1 30.9 390 153-626 624-1016(1636)
78 KOG3785 Uncharacterized conser 98.6 0.00037 8.1E-09 68.9 32.7 346 153-534 66-455 (557)
79 cd05804 StaR_like StaR_like; a 98.5 0.00036 7.8E-09 74.4 34.3 309 179-500 5-336 (355)
80 KOG1156 N-terminal acetyltrans 98.5 0.0022 4.7E-08 68.9 38.3 365 143-536 40-434 (700)
81 KOG1174 Anaphase-promoting com 98.5 0.00028 6E-09 71.3 29.4 266 252-535 230-499 (564)
82 PF04733 Coatomer_E: Coatomer 98.5 4.3E-06 9.3E-11 84.9 17.1 244 274-535 15-264 (290)
83 KOG2047 mRNA splicing factor [ 98.5 0.0031 6.8E-08 67.5 46.2 369 153-535 178-614 (835)
84 KOG2047 mRNA splicing factor [ 98.5 0.0033 7.1E-08 67.4 45.7 368 155-540 113-582 (835)
85 KOG4162 Predicted calmodulin-b 98.5 0.00044 9.5E-09 75.4 31.8 364 211-625 319-738 (799)
86 PRK04841 transcriptional regul 98.5 0.0006 1.3E-08 82.6 37.4 338 190-536 384-760 (903)
87 COG3063 PilF Tfp pilus assembl 98.5 0.00013 2.8E-09 68.3 23.5 197 335-535 38-235 (250)
88 KOG4340 Uncharacterized conser 98.4 0.00019 4.1E-09 69.3 24.2 183 309-497 124-336 (459)
89 KOG1070 rRNA processing protei 98.4 0.00026 5.6E-09 81.7 27.6 227 297-529 1458-1693(1710)
90 KOG3785 Uncharacterized conser 98.4 0.0038 8.2E-08 62.0 32.8 419 156-651 34-497 (557)
91 COG3063 PilF Tfp pilus assembl 98.3 0.00086 1.9E-08 62.9 25.6 203 303-512 41-245 (250)
92 KOG3617 WD40 and TPR repeat-co 98.3 0.0031 6.8E-08 69.1 33.3 318 153-534 737-1107(1416)
93 PF04733 Coatomer_E: Coatomer 98.3 1E-05 2.2E-10 82.1 14.4 216 306-535 10-229 (290)
94 KOG1914 mRNA cleavage and poly 98.3 0.0073 1.6E-07 63.6 37.7 409 177-597 17-496 (656)
95 KOG1070 rRNA processing protei 98.3 0.00024 5.3E-09 81.8 25.9 205 331-541 1457-1668(1710)
96 KOG0985 Vesicle coat protein c 98.3 0.0066 1.4E-07 68.2 35.3 258 313-618 1064-1326(1666)
97 PRK04841 transcriptional regul 98.3 0.0035 7.7E-08 76.0 37.9 261 274-535 423-719 (903)
98 KOG2376 Signal recognition par 98.3 0.0095 2.1E-07 63.5 39.9 43 576-618 461-505 (652)
99 PF03161 LAGLIDADG_2: LAGLIDAD 98.3 3.4E-07 7.4E-12 86.0 2.4 86 627-712 86-178 (178)
100 KOG3617 WD40 and TPR repeat-co 98.3 0.0004 8.6E-09 75.8 25.1 242 178-464 724-994 (1416)
101 KOG2376 Signal recognition par 98.2 0.0094 2E-07 63.5 34.1 116 418-535 357-486 (652)
102 KOG2053 Mitochondrial inherita 98.2 0.02 4.3E-07 64.1 39.2 221 156-397 21-256 (932)
103 TIGR03302 OM_YfiO outer membra 98.2 0.00026 5.6E-09 70.5 21.6 186 331-535 32-231 (235)
104 PLN02789 farnesyltranstransfer 98.2 0.0017 3.8E-08 66.9 27.8 232 275-533 35-299 (320)
105 KOG1125 TPR repeat-containing 98.2 0.00018 3.9E-09 76.0 19.9 221 307-534 295-525 (579)
106 KOG0548 Molecular co-chaperone 98.2 0.0072 1.6E-07 63.7 30.9 364 153-535 11-454 (539)
107 PLN02789 farnesyltranstransfer 98.1 0.00092 2E-08 68.9 23.9 206 375-617 45-267 (320)
108 KOG3616 Selective LIM binding 98.1 0.0015 3.3E-08 70.4 25.6 171 339-534 739-909 (1636)
109 KOG0985 Vesicle coat protein c 98.1 0.029 6.3E-07 63.3 35.6 334 144-550 984-1318(1666)
110 TIGR03302 OM_YfiO outer membra 98.1 0.00055 1.2E-08 68.1 21.4 180 299-500 35-232 (235)
111 KOG4340 Uncharacterized conser 98.1 0.00075 1.6E-08 65.3 20.6 181 344-532 124-335 (459)
112 PRK10370 formate-dependent nit 98.1 0.00094 2E-08 64.0 21.3 118 415-535 52-172 (198)
113 KOG1125 TPR repeat-containing 98.1 0.00018 4E-09 75.9 17.1 217 342-596 295-521 (579)
114 TIGR00756 PPR pentatricopeptid 98.0 6.3E-06 1.4E-10 54.0 4.2 33 404-436 2-34 (35)
115 TIGR00756 PPR pentatricopeptid 98.0 7.8E-06 1.7E-10 53.6 4.5 33 369-401 2-34 (35)
116 KOG1128 Uncharacterized conser 98.0 0.0002 4.3E-09 77.6 17.1 210 305-535 406-615 (777)
117 PRK10370 formate-dependent nit 98.0 0.0011 2.3E-08 63.6 20.7 127 380-510 52-181 (198)
118 PRK15359 type III secretion sy 98.0 0.0002 4.4E-09 64.8 14.0 57 476-534 29-85 (144)
119 PF13812 PPR_3: Pentatricopept 97.9 1.3E-05 2.9E-10 52.1 4.2 32 369-400 3-34 (34)
120 PRK14720 transcript cleavage f 97.9 0.0036 7.8E-08 72.1 26.1 220 214-482 30-268 (906)
121 COG5010 TadD Flp pilus assembl 97.9 0.0023 5E-08 61.4 20.5 160 371-534 70-229 (257)
122 PRK15179 Vi polysaccharide bio 97.9 0.0022 4.8E-08 73.0 24.0 159 365-534 84-243 (694)
123 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 51.8 4.2 33 403-435 2-34 (34)
124 PRK15359 type III secretion sy 97.9 0.00097 2.1E-08 60.3 17.3 90 409-499 31-120 (144)
125 KOG1127 TPR repeat-containing 97.9 0.023 4.9E-07 64.2 30.2 167 453-626 799-988 (1238)
126 KOG3081 Vesicle coat complex C 97.9 0.0036 7.8E-08 60.1 20.8 184 354-550 95-283 (299)
127 PRK15179 Vi polysaccharide bio 97.9 0.0075 1.6E-07 68.8 26.9 183 329-520 83-268 (694)
128 KOG1128 Uncharacterized conser 97.9 0.0023 5.1E-08 69.6 21.3 222 176-430 394-615 (777)
129 PRK14720 transcript cleavage f 97.8 0.0057 1.2E-07 70.4 24.6 242 331-623 30-273 (906)
130 KOG1127 TPR repeat-containing 97.8 0.06 1.3E-06 61.0 31.1 183 196-395 474-658 (1238)
131 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.8E-10 49.4 3.2 29 509-537 2-30 (31)
132 COG5010 TadD Flp pilus assembl 97.7 0.0053 1.1E-07 59.0 19.4 161 336-499 70-230 (257)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.001 2.2E-08 70.0 15.9 122 407-534 174-295 (395)
134 KOG0624 dsRNA-activated protei 97.7 0.067 1.5E-06 53.3 29.7 315 156-535 50-369 (504)
135 COG4783 Putative Zn-dependent 97.7 0.026 5.6E-07 59.2 25.0 142 374-537 313-455 (484)
136 PF01535 PPR: PPR repeat; Int 97.7 3.9E-05 8.5E-10 48.6 3.1 29 369-397 2-30 (31)
137 COG4783 Putative Zn-dependent 97.7 0.0034 7.4E-08 65.5 18.6 147 341-510 315-462 (484)
138 TIGR02552 LcrH_SycD type III s 97.7 0.0011 2.4E-08 59.4 13.7 97 437-535 17-113 (135)
139 KOG3081 Vesicle coat complex C 97.7 0.014 3E-07 56.2 21.0 171 319-499 95-270 (299)
140 TIGR02552 LcrH_SycD type III s 97.7 0.0023 5E-08 57.3 15.4 95 405-500 20-114 (135)
141 KOG0548 Molecular co-chaperone 97.6 0.12 2.7E-06 54.8 31.6 371 188-613 10-468 (539)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0029 6.2E-08 66.7 17.7 124 371-499 173-296 (395)
143 KOG1914 mRNA cleavage and poly 97.6 0.14 3.1E-06 54.3 34.3 421 100-535 9-500 (656)
144 PF08579 RPM2: Mitochondrial r 97.6 0.001 2.2E-08 55.0 10.5 81 183-266 28-116 (120)
145 PF10037 MRP-S27: Mitochondria 97.5 0.0013 2.7E-08 69.6 13.7 124 327-450 61-186 (429)
146 PF08579 RPM2: Mitochondrial r 97.5 0.0014 2.9E-08 54.3 10.4 78 337-414 30-116 (120)
147 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3.1E-08 69.2 13.2 123 397-520 61-186 (429)
148 KOG3060 Uncharacterized conser 97.5 0.052 1.1E-06 52.0 21.7 186 344-534 24-218 (289)
149 PF09976 TPR_21: Tetratricopep 97.4 0.007 1.5E-07 54.9 15.6 115 275-391 26-142 (145)
150 KOG3060 Uncharacterized conser 97.4 0.13 2.9E-06 49.3 23.7 191 308-501 23-221 (289)
151 PF05843 Suf: Suppressor of fo 97.4 0.0025 5.4E-08 64.9 13.5 130 403-535 2-135 (280)
152 cd00189 TPR Tetratricopeptide 97.4 0.0027 5.8E-08 52.0 11.2 92 441-534 4-95 (100)
153 KOG2053 Mitochondrial inherita 97.4 0.43 9.3E-06 53.9 43.5 384 144-550 40-514 (932)
154 PF09976 TPR_21: Tetratricopep 97.3 0.011 2.4E-07 53.6 15.8 113 415-532 24-143 (145)
155 KOG0624 dsRNA-activated protei 97.3 0.22 4.7E-06 49.9 31.7 291 179-535 37-335 (504)
156 PF06239 ECSIT: Evolutionarily 97.3 0.0031 6.7E-08 59.1 11.5 88 329-416 44-152 (228)
157 cd00189 TPR Tetratricopeptide 97.3 0.0046 9.9E-08 50.5 11.9 92 407-499 5-96 (100)
158 PF06239 ECSIT: Evolutionarily 97.2 0.0042 9.2E-08 58.2 11.4 87 365-451 45-152 (228)
159 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0084 1.8E-07 52.0 12.6 98 439-536 4-105 (119)
160 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.027 5.8E-07 48.8 14.6 17 377-393 12-28 (119)
161 PRK02603 photosystem I assembl 96.9 0.04 8.6E-07 51.6 15.4 87 368-455 36-124 (172)
162 PF05843 Suf: Suppressor of fo 96.9 0.024 5.3E-07 57.6 14.6 130 369-500 3-136 (280)
163 KOG0553 TPR repeat-containing 96.9 0.012 2.6E-07 57.8 11.5 99 481-613 91-191 (304)
164 PLN03088 SGT1, suppressor of 96.8 0.022 4.8E-07 60.2 14.3 85 414-499 14-98 (356)
165 PLN03088 SGT1, suppressor of 96.7 0.018 3.9E-07 60.9 12.6 90 444-535 9-98 (356)
166 PF12895 Apc3: Anaphase-promot 96.7 0.0049 1.1E-07 49.8 6.4 80 450-532 2-83 (84)
167 PF14938 SNAP: Soluble NSF att 96.6 0.23 5E-06 50.7 19.6 117 405-536 97-225 (282)
168 PRK10866 outer membrane biogen 96.6 0.43 9.3E-06 47.3 20.8 57 442-498 180-239 (243)
169 PF12688 TPR_5: Tetratrico pep 96.6 0.11 2.3E-06 44.9 14.3 88 411-498 10-102 (120)
170 PF12895 Apc3: Anaphase-promot 96.6 0.0049 1.1E-07 49.8 5.8 80 416-496 3-83 (84)
171 PRK02603 photosystem I assembl 96.6 0.12 2.6E-06 48.3 16.0 93 332-425 35-129 (172)
172 PF14559 TPR_19: Tetratricopep 96.6 0.011 2.3E-07 45.5 7.2 62 449-513 3-64 (68)
173 CHL00033 ycf3 photosystem I as 96.5 0.065 1.4E-06 49.9 13.7 78 405-482 38-117 (168)
174 PF03704 BTAD: Bacterial trans 96.5 0.14 3E-06 46.4 15.4 73 471-545 62-139 (146)
175 PRK10153 DNA-binding transcrip 96.5 0.17 3.7E-06 56.1 18.7 66 467-535 416-481 (517)
176 PRK10153 DNA-binding transcrip 96.4 0.13 2.8E-06 57.0 17.1 144 433-609 333-491 (517)
177 CHL00033 ycf3 photosystem I as 96.3 0.087 1.9E-06 49.1 13.3 63 368-430 36-100 (168)
178 PF12688 TPR_5: Tetratrico pep 96.3 0.2 4.4E-06 43.2 13.9 105 305-413 9-117 (120)
179 PRK15363 pathogenicity island 96.2 0.12 2.7E-06 46.3 12.8 94 440-535 38-131 (157)
180 PF13432 TPR_16: Tetratricopep 96.2 0.021 4.6E-07 43.3 7.0 54 479-534 5-58 (65)
181 PRK15363 pathogenicity island 96.2 0.12 2.7E-06 46.3 12.6 88 411-499 44-131 (157)
182 KOG0553 TPR repeat-containing 96.1 0.097 2.1E-06 51.6 12.5 86 447-535 91-177 (304)
183 PF13414 TPR_11: TPR repeat; P 96.1 0.024 5.2E-07 43.6 7.0 64 470-535 2-66 (69)
184 PRK10866 outer membrane biogen 96.0 1.9 4.1E-05 42.7 22.1 177 341-535 41-240 (243)
185 PF14559 TPR_19: Tetratricopep 96.0 0.024 5.2E-07 43.5 6.3 63 156-222 3-65 (68)
186 PF13432 TPR_16: Tetratricopep 95.7 0.05 1.1E-06 41.2 7.2 59 443-501 3-61 (65)
187 PF13525 YfiO: Outer membrane 95.7 1.2 2.7E-05 42.8 18.4 47 477-526 147-197 (203)
188 PF09205 DUF1955: Domain of un 95.7 0.84 1.8E-05 39.3 14.4 67 470-538 85-151 (161)
189 PF04840 Vps16_C: Vps16, C-ter 95.6 3.4 7.4E-05 42.7 25.1 104 372-494 182-285 (319)
190 KOG2796 Uncharacterized conser 95.6 0.32 6.9E-06 46.9 12.9 139 372-513 182-325 (366)
191 PF12921 ATP13: Mitochondrial 95.5 0.18 3.9E-06 44.0 10.7 48 468-515 49-96 (126)
192 PF13414 TPR_11: TPR repeat; P 95.5 0.064 1.4E-06 41.2 7.1 63 437-499 3-66 (69)
193 PF13525 YfiO: Outer membrane 95.5 1.3 2.8E-05 42.7 17.5 48 443-490 147-197 (203)
194 PF12921 ATP13: Mitochondrial 95.5 0.22 4.7E-06 43.5 10.9 28 331-358 1-28 (126)
195 PF14938 SNAP: Soluble NSF att 95.4 3.6 7.8E-05 42.0 22.9 25 371-395 159-183 (282)
196 KOG1130 Predicted G-alpha GTPa 95.4 0.54 1.2E-05 48.3 14.7 299 297-622 17-372 (639)
197 KOG0550 Molecular chaperone (D 95.4 0.43 9.3E-06 49.2 13.9 159 435-626 166-342 (486)
198 KOG1538 Uncharacterized conser 95.2 2.4 5.1E-05 46.3 19.4 94 179-285 555-657 (1081)
199 PF13424 TPR_12: Tetratricopep 95.1 0.081 1.8E-06 41.8 6.7 63 472-534 6-73 (78)
200 PRK10803 tol-pal system protei 95.0 0.43 9.3E-06 47.8 13.0 97 439-535 145-245 (263)
201 KOG2796 Uncharacterized conser 95.0 3.8 8.2E-05 39.9 18.6 137 404-544 179-321 (366)
202 KOG2041 WD40 repeat protein [G 95.0 4.7 0.0001 44.5 20.9 237 212-499 689-951 (1189)
203 COG4700 Uncharacterized protei 95.0 3 6.4E-05 38.4 18.6 126 400-530 87-216 (251)
204 PF03704 BTAD: Bacterial trans 95.0 0.17 3.7E-06 45.8 9.3 71 333-404 63-138 (146)
205 PF13170 DUF4003: Protein of u 94.9 1.4 3E-05 45.0 16.5 137 196-337 78-222 (297)
206 COG4700 Uncharacterized protei 94.9 3.1 6.7E-05 38.3 17.8 132 329-464 86-220 (251)
207 PRK10803 tol-pal system protei 94.9 0.59 1.3E-05 46.8 13.6 94 405-500 146-246 (263)
208 COG4235 Cytochrome c biogenesi 94.9 0.51 1.1E-05 46.9 12.7 98 436-535 155-255 (287)
209 COG5107 RNA14 Pre-mRNA 3'-end 94.8 0.89 1.9E-05 47.4 14.4 147 401-552 396-545 (660)
210 PF13371 TPR_9: Tetratricopept 94.8 0.17 3.8E-06 39.2 7.7 53 447-499 5-57 (73)
211 KOG1130 Predicted G-alpha GTPa 94.5 0.83 1.8E-05 47.0 13.3 254 340-626 25-336 (639)
212 COG4235 Cytochrome c biogenesi 94.5 1.9 4.2E-05 43.0 15.6 114 399-516 153-269 (287)
213 smart00299 CLH Clathrin heavy 94.5 2.5 5.4E-05 37.8 15.5 43 337-380 12-54 (140)
214 PF04184 ST7: ST7 protein; In 94.4 8.4 0.00018 41.3 21.0 165 218-409 172-338 (539)
215 PF13170 DUF4003: Protein of u 94.4 1.4 3E-05 45.0 14.9 155 215-371 60-221 (297)
216 KOG3941 Intermediate in Toll s 94.4 0.68 1.5E-05 45.2 11.8 33 420-452 141-173 (406)
217 COG0457 NrfG FOG: TPR repeat [ 94.3 5.4 0.00012 38.3 27.7 219 313-535 39-264 (291)
218 PF13424 TPR_12: Tetratricopep 94.2 0.14 2.9E-06 40.5 6.0 60 439-498 7-73 (78)
219 KOG3941 Intermediate in Toll s 94.2 0.78 1.7E-05 44.8 11.8 48 383-430 139-187 (406)
220 KOG1920 IkappaB kinase complex 93.6 12 0.00027 44.2 21.9 189 307-534 861-1053(1265)
221 KOG1585 Protein required for f 93.6 5.9 0.00013 38.2 16.1 200 305-531 39-251 (308)
222 PF13371 TPR_9: Tetratricopept 93.6 0.27 5.7E-06 38.2 6.5 57 478-536 2-58 (73)
223 PF13281 DUF4071: Domain of un 93.5 11 0.00024 39.5 19.7 77 336-412 145-227 (374)
224 smart00299 CLH Clathrin heavy 93.4 5.3 0.00012 35.6 15.6 127 370-519 10-137 (140)
225 KOG1538 Uncharacterized conser 93.3 11 0.00024 41.5 19.4 192 313-533 616-830 (1081)
226 PF07079 DUF1347: Protein of u 93.3 13 0.00028 39.4 39.7 388 152-557 87-541 (549)
227 PLN03098 LPA1 LOW PSII ACCUMUL 93.2 0.44 9.5E-06 50.4 9.0 99 436-540 74-178 (453)
228 PF04840 Vps16_C: Vps16, C-ter 93.1 12 0.00026 38.7 26.6 110 333-462 178-287 (319)
229 PF13281 DUF4071: Domain of un 93.1 13 0.00028 39.0 21.1 164 372-536 146-334 (374)
230 PLN03098 LPA1 LOW PSII ACCUMUL 93.0 2.6 5.6E-05 44.9 14.3 99 331-433 74-176 (453)
231 PF07079 DUF1347: Protein of u 92.8 15 0.00033 38.9 33.7 143 190-344 16-179 (549)
232 PF13431 TPR_17: Tetratricopep 92.4 0.1 2.2E-06 33.6 2.0 28 598-625 6-33 (34)
233 PF10300 DUF3808: Protein of u 92.3 9.6 0.00021 42.0 18.4 114 161-287 174-294 (468)
234 PF08631 SPO22: Meiosis protei 92.2 15 0.00032 37.4 26.5 19 516-534 255-273 (278)
235 PF09205 DUF1955: Domain of un 92.2 7.2 0.00016 33.8 14.0 58 374-432 93-150 (161)
236 COG4105 ComL DNA uptake lipopr 92.2 13 0.00027 36.5 19.2 65 512-605 172-237 (254)
237 PRK15331 chaperone protein Sic 92.0 5 0.00011 36.5 12.8 86 343-430 48-133 (165)
238 PRK15331 chaperone protein Sic 91.9 4.7 0.0001 36.7 12.6 89 445-535 45-133 (165)
239 PF04053 Coatomer_WDAD: Coatom 91.6 6.4 0.00014 42.8 15.8 133 367-532 295-427 (443)
240 COG3118 Thioredoxin domain-con 91.5 16 0.00035 36.5 17.6 57 339-396 141-197 (304)
241 KOG0543 FKBP-type peptidyl-pro 90.7 4.8 0.0001 41.9 12.9 58 442-499 262-319 (397)
242 KOG0543 FKBP-type peptidyl-pro 90.7 6.4 0.00014 41.0 13.7 106 374-480 215-334 (397)
243 COG3629 DnrI DNA-binding trans 90.7 2.6 5.6E-05 42.2 10.7 79 471-551 153-236 (280)
244 KOG4555 TPR repeat-containing 90.6 4.2 9.2E-05 35.0 10.2 92 446-537 52-145 (175)
245 PF04184 ST7: ST7 protein; In 90.3 30 0.00065 37.4 18.7 83 437-521 259-345 (539)
246 PF10300 DUF3808: Protein of u 90.1 14 0.0003 40.7 17.0 127 153-290 197-335 (468)
247 KOG4555 TPR repeat-containing 89.7 7.6 0.00016 33.5 11.0 56 479-536 51-106 (175)
248 KOG0550 Molecular chaperone (D 89.5 30 0.00065 36.3 19.6 236 156-430 61-315 (486)
249 COG0457 NrfG FOG: TPR repeat [ 89.4 20 0.00043 34.1 26.4 187 345-535 36-230 (291)
250 PF07035 Mic1: Colon cancer-as 89.3 18 0.00038 33.3 14.8 136 387-536 14-149 (167)
251 COG1729 Uncharacterized protei 89.0 6.3 0.00014 38.9 11.7 85 416-500 155-244 (262)
252 KOG2297 Predicted translation 88.9 27 0.00059 34.9 18.0 50 214-267 110-159 (412)
253 COG5107 RNA14 Pre-mRNA 3'-end 88.6 36 0.00079 36.1 33.2 150 373-535 339-494 (660)
254 PF04053 Coatomer_WDAD: Coatom 88.6 7.4 0.00016 42.3 13.2 155 310-497 274-428 (443)
255 COG3629 DnrI DNA-binding trans 88.6 4.7 0.0001 40.4 10.7 78 438-516 154-236 (280)
256 PF07035 Mic1: Colon cancer-as 88.3 21 0.00045 32.8 14.3 33 318-350 15-47 (167)
257 KOG2610 Uncharacterized conser 87.8 32 0.0007 35.0 15.6 157 379-537 115-277 (491)
258 PF13512 TPR_18: Tetratricopep 87.1 11 0.00024 33.5 10.9 75 306-380 19-95 (142)
259 PF13428 TPR_14: Tetratricopep 87.1 2.3 5E-05 29.0 5.5 27 474-500 4-30 (44)
260 PRK11906 transcriptional regul 86.7 50 0.0011 35.6 18.5 150 383-534 274-434 (458)
261 KOG2610 Uncharacterized conser 86.0 18 0.00039 36.7 12.8 117 309-427 115-234 (491)
262 PRK11906 transcriptional regul 85.9 9.6 0.00021 40.8 11.7 115 158-286 318-433 (458)
263 COG1729 Uncharacterized protei 85.9 16 0.00035 36.1 12.5 96 334-430 144-243 (262)
264 PF13428 TPR_14: Tetratricopep 85.7 2.9 6.3E-05 28.5 5.4 39 439-477 3-41 (44)
265 COG3118 Thioredoxin domain-con 85.6 42 0.00091 33.7 17.4 149 374-524 141-289 (304)
266 PF13176 TPR_7: Tetratricopept 85.5 1.9 4.1E-05 28.0 4.2 26 509-534 1-26 (36)
267 PF10602 RPN7: 26S proteasome 85.1 13 0.00029 34.7 11.3 62 369-430 38-101 (177)
268 COG4105 ComL DNA uptake lipopr 84.5 43 0.00094 32.9 20.7 70 309-378 46-117 (254)
269 PF13176 TPR_7: Tetratricopept 84.1 2.2 4.8E-05 27.6 4.1 26 473-498 1-26 (36)
270 PF10602 RPN7: 26S proteasome 82.4 24 0.00053 32.9 11.8 97 403-499 37-141 (177)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 81.9 8.9 0.00019 31.2 7.2 59 420-478 25-83 (103)
272 KOG1941 Acetylcholine receptor 81.7 51 0.0011 34.0 14.1 132 404-535 85-234 (518)
273 PF04097 Nic96: Nup93/Nic96; 81.6 32 0.00069 39.4 14.7 217 309-534 270-532 (613)
274 PF13431 TPR_17: Tetratricopep 80.9 2.1 4.5E-05 27.4 2.9 24 468-491 10-33 (34)
275 COG1747 Uncharacterized N-term 80.8 90 0.0019 33.9 23.2 172 305-483 74-251 (711)
276 KOG1941 Acetylcholine receptor 80.5 75 0.0016 32.8 18.8 203 332-534 43-273 (518)
277 PF13512 TPR_18: Tetratricopep 80.4 25 0.00055 31.2 10.4 89 252-347 9-97 (142)
278 PF14528 LAGLIDADG_3: LAGLIDAD 80.2 4.8 0.0001 31.5 5.5 45 671-715 29-76 (77)
279 PF08631 SPO22: Meiosis protei 79.8 73 0.0016 32.3 27.2 61 370-431 87-150 (278)
280 KOG1550 Extracellular protein 79.0 1.2E+02 0.0026 34.3 22.8 183 275-465 227-425 (552)
281 KOG1586 Protein required for f 78.9 48 0.001 32.1 12.1 85 443-536 99-183 (288)
282 KOG4570 Uncharacterized conser 78.9 18 0.00038 36.4 9.7 48 417-464 115-162 (418)
283 KOG4648 Uncharacterized conser 78.7 11 0.00024 38.2 8.3 81 445-534 105-185 (536)
284 COG3898 Uncharacterized membra 78.7 90 0.0019 32.7 32.4 309 198-535 71-391 (531)
285 KOG2280 Vacuolar assembly/sort 77.7 1.4E+02 0.003 34.2 26.9 111 403-532 685-795 (829)
286 KOG4570 Uncharacterized conser 77.4 16 0.00034 36.7 8.9 105 326-432 58-165 (418)
287 PF13929 mRNA_stabil: mRNA sta 76.9 82 0.0018 31.7 13.8 113 383-495 144-262 (292)
288 PF00515 TPR_1: Tetratricopept 76.9 6 0.00013 24.9 4.2 27 509-535 3-29 (34)
289 PF02284 COX5A: Cytochrome c o 76.8 9.2 0.0002 31.5 6.0 58 421-478 29-86 (108)
290 PF00515 TPR_1: Tetratricopept 76.7 6.3 0.00014 24.8 4.3 29 472-500 2-30 (34)
291 KOG1258 mRNA processing protei 76.3 1.3E+02 0.0029 33.3 35.1 119 159-288 60-179 (577)
292 PF13374 TPR_10: Tetratricopep 76.0 6.2 0.00013 26.1 4.4 25 473-497 4-28 (42)
293 COG4455 ImpE Protein of avirul 76.0 52 0.0011 31.5 11.4 58 475-534 5-62 (273)
294 KOG1464 COP9 signalosome, subu 75.6 87 0.0019 30.9 20.7 71 288-359 19-92 (440)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 75.3 18 0.0004 29.5 7.2 60 314-375 24-84 (103)
296 PF13374 TPR_10: Tetratricopep 74.8 7.4 0.00016 25.7 4.5 29 507-535 2-30 (42)
297 KOG2114 Vacuolar assembly/sort 74.6 74 0.0016 36.7 14.1 202 307-535 344-549 (933)
298 PF13929 mRNA_stabil: mRNA sta 74.3 1E+02 0.0022 31.1 13.7 61 328-388 198-259 (292)
299 PF09613 HrpB1_HrpK: Bacterial 74.1 70 0.0015 29.1 13.9 52 343-396 21-73 (160)
300 COG4649 Uncharacterized protei 73.6 75 0.0016 29.3 16.4 134 153-295 67-202 (221)
301 PF11207 DUF2989: Protein of u 73.5 29 0.00062 32.8 9.2 72 384-456 123-197 (203)
302 KOG2114 Vacuolar assembly/sort 71.9 56 0.0012 37.6 12.4 178 183-394 337-517 (933)
303 PF08311 Mad3_BUB1_I: Mad3/BUB 71.7 34 0.00074 29.8 9.0 92 114-205 27-124 (126)
304 PF11207 DUF2989: Protein of u 71.7 35 0.00077 32.2 9.4 78 412-491 117-198 (203)
305 PF13762 MNE1: Mitochondrial s 70.6 79 0.0017 28.3 11.8 92 428-520 28-128 (145)
306 COG4649 Uncharacterized protei 70.2 91 0.002 28.8 15.2 54 308-361 143-196 (221)
307 KOG1920 IkappaB kinase complex 70.1 2.6E+02 0.0056 34.0 28.1 154 312-499 895-1054(1265)
308 COG3947 Response regulator con 69.9 1.3E+02 0.0028 30.3 15.6 60 334-394 281-340 (361)
309 PF00637 Clathrin: Region in C 69.6 1.4 2.9E-05 39.7 -0.3 83 338-427 13-95 (143)
310 PF07719 TPR_2: Tetratricopept 69.2 12 0.00026 23.3 4.3 26 474-499 4-29 (34)
311 COG3898 Uncharacterized membra 68.8 1.6E+02 0.0034 31.0 30.1 287 153-465 93-391 (531)
312 COG3947 Response regulator con 68.7 1.3E+02 0.0029 30.2 16.3 61 473-535 281-341 (361)
313 TIGR02508 type_III_yscG type I 68.7 66 0.0014 26.6 9.4 91 156-259 17-107 (115)
314 KOG2280 Vacuolar assembly/sort 68.3 2.2E+02 0.0049 32.6 29.9 296 274-626 451-791 (829)
315 KOG1464 COP9 signalosome, subu 68.2 1.3E+02 0.0028 29.8 24.9 275 271-556 38-351 (440)
316 COG4455 ImpE Protein of avirul 67.9 33 0.00072 32.7 8.2 44 449-492 13-56 (273)
317 PF02284 COX5A: Cytochrome c o 67.3 25 0.00053 29.1 6.4 61 198-263 28-88 (108)
318 PF07719 TPR_2: Tetratricopept 65.4 15 0.00033 22.8 4.2 28 508-535 2-29 (34)
319 PF11848 DUF3368: Domain of un 65.3 21 0.00045 25.0 5.1 32 517-548 12-43 (48)
320 PF13762 MNE1: Mitochondrial s 64.8 1.1E+02 0.0023 27.5 10.8 36 323-358 28-65 (145)
321 PF09613 HrpB1_HrpK: Bacterial 64.7 1.1E+02 0.0024 27.8 14.0 88 449-544 22-112 (160)
322 KOG2041 WD40 repeat protein [G 64.2 2.6E+02 0.0056 31.8 30.5 66 177-247 689-763 (1189)
323 PHA02875 ankyrin repeat protei 64.0 77 0.0017 34.3 12.0 201 283-507 18-230 (413)
324 PF11663 Toxin_YhaV: Toxin wit 63.1 8.2 0.00018 33.6 3.2 33 191-225 106-138 (140)
325 KOG4648 Uncharacterized conser 62.2 21 0.00045 36.3 6.2 86 410-507 105-198 (536)
326 PF00637 Clathrin: Region in C 61.9 4.9 0.00011 36.0 1.8 89 146-245 9-97 (143)
327 PF10345 Cohesin_load: Cohesin 61.8 3E+02 0.0064 31.7 31.9 301 213-531 28-428 (608)
328 KOG1550 Extracellular protein 60.9 2.9E+02 0.0063 31.3 26.8 191 160-363 228-428 (552)
329 KOG1585 Protein required for f 60.7 1.7E+02 0.0038 28.7 20.4 222 336-621 35-268 (308)
330 PF04097 Nic96: Nup93/Nic96; 60.7 3.1E+02 0.0067 31.5 24.7 76 214-295 111-187 (613)
331 PHA02875 ankyrin repeat protei 59.4 47 0.001 36.0 9.3 208 308-541 10-229 (413)
332 KOG4234 TPR repeat-containing 59.1 97 0.0021 29.3 9.4 86 447-535 105-196 (271)
333 PF09477 Type_III_YscG: Bacter 57.3 1.1E+02 0.0025 25.6 8.5 79 452-537 21-99 (116)
334 TIGR02508 type_III_yscG type I 56.8 1.1E+02 0.0024 25.3 8.2 50 377-432 49-98 (115)
335 KOG0276 Vesicle coat complex C 56.7 1.4E+02 0.0031 33.2 11.6 98 414-532 649-746 (794)
336 COG2178 Predicted RNA-binding 56.6 1.7E+02 0.0037 27.5 10.6 16 519-534 133-148 (204)
337 PF13181 TPR_8: Tetratricopept 55.4 30 0.00065 21.5 4.3 27 509-535 3-29 (34)
338 PF13181 TPR_8: Tetratricopept 55.4 31 0.00067 21.4 4.3 28 472-499 2-29 (34)
339 PF07721 TPR_4: Tetratricopept 55.1 21 0.00046 21.0 3.2 18 477-494 7-24 (26)
340 PF02259 FAT: FAT domain; Int 53.0 2.9E+02 0.0062 28.8 23.6 67 468-535 143-212 (352)
341 COG2976 Uncharacterized protei 52.9 2.1E+02 0.0045 27.1 13.8 93 299-396 91-188 (207)
342 TIGR02561 HrpB1_HrpK type III 52.5 1.8E+02 0.0038 26.2 12.6 52 344-397 22-74 (153)
343 PF11663 Toxin_YhaV: Toxin wit 52.4 15 0.00032 32.0 2.9 34 377-412 105-138 (140)
344 COG5159 RPN6 26S proteasome re 52.0 2E+02 0.0043 28.8 10.8 128 408-535 9-153 (421)
345 KOG4077 Cytochrome c oxidase, 51.4 88 0.0019 27.1 7.2 58 421-478 68-125 (149)
346 PF13174 TPR_6: Tetratricopept 51.2 23 0.00051 21.7 3.2 21 479-499 8-28 (33)
347 KOG4234 TPR repeat-containing 50.8 69 0.0015 30.2 7.1 84 516-626 104-189 (271)
348 PF08424 NRDE-2: NRDE-2, neces 50.5 3.1E+02 0.0067 28.5 18.4 25 481-505 164-188 (321)
349 PF14689 SPOB_a: Sensor_kinase 50.2 37 0.0008 25.3 4.5 47 486-535 5-51 (62)
350 TIGR03504 FimV_Cterm FimV C-te 49.1 30 0.00066 23.7 3.5 25 338-362 5-29 (44)
351 PF11846 DUF3366: Domain of un 49.0 76 0.0016 30.0 7.8 33 467-499 140-172 (193)
352 PF10579 Rapsyn_N: Rapsyn N-te 48.6 41 0.00088 26.4 4.5 48 483-530 18-66 (80)
353 PF07163 Pex26: Pex26 protein; 48.4 1.9E+02 0.0042 29.0 10.1 55 374-430 90-146 (309)
354 KOG2063 Vacuolar assembly/sort 48.1 5.5E+02 0.012 30.7 16.2 27 217-246 506-532 (877)
355 TIGR03504 FimV_Cterm FimV C-te 46.1 35 0.00076 23.4 3.5 25 477-501 5-29 (44)
356 PRK13342 recombination factor 45.9 4.2E+02 0.0091 28.6 19.1 35 485-520 244-278 (413)
357 TIGR02561 HrpB1_HrpK type III 45.7 2.3E+02 0.0049 25.5 10.9 21 481-501 54-74 (153)
358 KOG0276 Vesicle coat complex C 45.7 2E+02 0.0043 32.1 10.6 132 334-497 616-747 (794)
359 PF10579 Rapsyn_N: Rapsyn N-te 45.6 42 0.00092 26.3 4.2 45 449-493 18-65 (80)
360 COG4785 NlpI Lipoprotein NlpI, 45.6 2.9E+02 0.0062 26.7 12.9 27 439-465 101-127 (297)
361 cd08819 CARD_MDA5_2 Caspase ac 45.0 1.1E+02 0.0025 24.5 6.6 14 381-394 50-63 (88)
362 PF11838 ERAP1_C: ERAP1-like C 45.0 3.7E+02 0.0079 27.7 18.0 81 348-431 146-230 (324)
363 COG5108 RPO41 Mitochondrial DN 44.8 1.1E+02 0.0023 34.4 8.5 75 407-483 33-115 (1117)
364 PF07163 Pex26: Pex26 protein; 43.5 2.6E+02 0.0057 28.0 10.2 89 337-425 88-181 (309)
365 PRK15180 Vi polysaccharide bio 43.3 1.9E+02 0.004 31.2 9.7 124 407-534 295-418 (831)
366 PF04190 DUF410: Protein of un 43.3 3.5E+02 0.0077 27.0 17.5 82 436-536 89-170 (260)
367 KOG2297 Predicted translation 43.1 3.8E+02 0.0082 27.3 16.3 21 573-593 321-341 (412)
368 KOG0687 26S proteasome regulat 42.2 4E+02 0.0088 27.4 16.7 135 327-465 65-209 (393)
369 KOG2062 26S proteasome regulat 41.9 6E+02 0.013 29.4 13.7 121 411-535 510-634 (929)
370 COG2976 Uncharacterized protei 41.1 3.2E+02 0.0069 25.9 14.8 89 444-537 96-189 (207)
371 PRK10564 maltose regulon perip 40.8 65 0.0014 32.6 5.9 41 364-404 253-294 (303)
372 KOG3807 Predicted membrane pro 40.4 4.3E+02 0.0092 27.2 13.1 105 275-394 231-338 (556)
373 PRK09687 putative lyase; Provi 40.4 4.1E+02 0.0089 26.9 28.8 222 179-430 36-262 (280)
374 TIGR01228 hutU urocanate hydra 40.0 2.6E+02 0.0057 30.4 10.3 66 311-389 208-278 (545)
375 PF11846 DUF3366: Domain of un 39.8 1E+02 0.0022 29.2 7.1 44 489-535 129-172 (193)
376 smart00386 HAT HAT (Half-A-TPR 39.5 62 0.0013 19.4 3.9 13 487-499 3-15 (33)
377 COG1747 Uncharacterized N-term 39.5 5.6E+02 0.012 28.2 26.3 179 330-517 64-249 (711)
378 PF09477 Type_III_YscG: Bacter 39.5 2.3E+02 0.005 23.8 9.7 89 156-257 18-106 (116)
379 COG2178 Predicted RNA-binding 39.1 3.4E+02 0.0074 25.6 10.7 54 447-500 39-98 (204)
380 PF11848 DUF3368: Domain of un 39.0 1.1E+02 0.0023 21.4 5.1 22 346-367 16-37 (48)
381 KOG2396 HAT (Half-A-TPR) repea 38.3 5.8E+02 0.012 28.1 21.5 255 201-472 303-565 (568)
382 PF06552 TOM20_plant: Plant sp 38.0 33 0.00072 31.8 3.1 67 590-658 52-123 (186)
383 PRK09687 putative lyase; Provi 38.0 4.5E+02 0.0097 26.7 29.3 136 367-518 142-278 (280)
384 smart00777 Mad3_BUB1_I Mad3/BU 37.7 1.3E+02 0.0029 26.1 6.6 43 488-531 80-123 (125)
385 COG4785 NlpI Lipoprotein NlpI, 37.6 3.9E+02 0.0084 25.8 20.7 86 156-247 77-162 (297)
386 PF14853 Fis1_TPR_C: Fis1 C-te 37.0 58 0.0013 23.4 3.6 33 579-611 7-41 (53)
387 COG2987 HutU Urocanate hydrata 36.8 31 0.00066 36.5 3.0 45 627-680 239-288 (561)
388 cd08819 CARD_MDA5_2 Caspase ac 36.8 2E+02 0.0044 23.1 6.8 65 386-456 21-85 (88)
389 smart00804 TAP_C C-terminal do 36.4 42 0.00091 25.1 2.9 22 486-507 40-61 (63)
390 PF14527 LAGLIDADG_WhiA: WhiA 36.2 52 0.0011 26.9 3.7 44 672-715 30-74 (93)
391 PF06552 TOM20_plant: Plant sp 35.7 3.7E+02 0.0081 25.1 11.1 45 487-540 96-140 (186)
392 KOG3364 Membrane protein invol 35.2 3.2E+02 0.007 24.2 8.8 75 505-609 30-109 (149)
393 PF10366 Vps39_1: Vacuolar sor 35.0 2.1E+02 0.0046 24.1 7.3 27 369-395 41-67 (108)
394 PF09868 DUF2095: Uncharacteri 34.2 1.1E+02 0.0023 25.8 5.1 32 141-176 62-93 (128)
395 KOG0686 COP9 signalosome, subu 34.2 6E+02 0.013 27.1 11.9 148 439-617 152-318 (466)
396 smart00028 TPR Tetratricopepti 34.1 68 0.0015 18.4 3.4 27 473-499 3-29 (34)
397 KOG0991 Replication factor C, 33.5 4.7E+02 0.01 25.6 10.5 100 156-264 171-282 (333)
398 PF14689 SPOB_a: Sensor_kinase 33.1 61 0.0013 24.1 3.4 30 471-500 23-52 (62)
399 KOG2582 COP9 signalosome, subu 32.8 3.3E+02 0.0071 28.5 9.3 20 153-172 192-211 (422)
400 KOG2066 Vacuolar assembly/sort 32.7 8.6E+02 0.019 28.4 23.8 99 154-266 366-467 (846)
401 PHA03100 ankyrin repeat protei 32.6 7E+02 0.015 27.4 14.0 143 305-461 40-197 (480)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 3.2E+02 0.0069 23.8 8.3 44 489-532 81-124 (126)
403 PF05944 Phage_term_smal: Phag 32.1 1.4E+02 0.003 26.3 5.8 43 137-179 41-83 (132)
404 KOG4077 Cytochrome c oxidase, 31.6 2.5E+02 0.0055 24.4 7.0 60 198-262 67-126 (149)
405 COG5108 RPO41 Mitochondrial DN 31.6 6.7E+02 0.015 28.6 11.9 91 337-430 33-131 (1117)
406 PHA02537 M terminase endonucle 31.4 5.1E+02 0.011 25.4 11.6 111 137-247 76-207 (230)
407 PHA03095 ankyrin-like protein; 30.8 6.2E+02 0.013 27.7 12.7 42 391-437 241-285 (471)
408 KOG4567 GTPase-activating prot 29.9 2.3E+02 0.0051 28.8 7.6 58 280-344 263-320 (370)
409 PHA03100 ankyrin repeat protei 29.8 2.9E+02 0.0062 30.5 9.8 162 318-493 87-269 (480)
410 PF10345 Cohesin_load: Cohesin 28.8 9.4E+02 0.02 27.6 35.0 373 156-534 111-604 (608)
411 COG4003 Uncharacterized protei 28.6 84 0.0018 24.6 3.4 30 476-505 36-65 (98)
412 COG0790 FOG: TPR repeat, SEL1 28.3 6.3E+02 0.014 25.4 23.9 82 455-543 173-273 (292)
413 PF10475 DUF2450: Protein of u 28.1 6.1E+02 0.013 25.8 10.9 25 468-492 194-218 (291)
414 PF02259 FAT: FAT domain; Int 27.7 7E+02 0.015 25.8 26.2 65 331-395 145-212 (352)
415 KOG1586 Protein required for f 27.5 6E+02 0.013 25.0 14.7 12 275-286 29-40 (288)
416 PHA02878 ankyrin repeat protei 27.5 6.2E+02 0.013 27.9 11.8 138 388-541 148-294 (477)
417 cd00280 TRFH Telomeric Repeat 27.3 4.2E+02 0.009 24.9 8.2 66 453-522 85-158 (200)
418 PF11768 DUF3312: Protein of u 26.9 6.3E+02 0.014 28.1 10.9 119 477-623 414-538 (545)
419 PHA02989 ankyrin repeat protei 26.9 7.5E+02 0.016 27.4 12.4 16 387-402 198-213 (494)
420 PF09454 Vps23_core: Vps23 cor 26.5 1.7E+02 0.0037 22.1 4.8 50 468-519 5-54 (65)
421 PF02841 GBP_C: Guanylate-bind 26.4 2.5E+02 0.0054 28.8 7.7 67 206-286 20-88 (297)
422 PRK10564 maltose regulon perip 26.2 1.2E+02 0.0027 30.7 5.1 37 328-364 252-289 (303)
423 PF09454 Vps23_core: Vps23 cor 25.8 84 0.0018 23.7 3.0 50 176-226 4-53 (65)
424 PRK09857 putative transposase; 25.7 5.7E+02 0.012 26.1 10.0 66 335-401 209-274 (292)
425 smart00777 Mad3_BUB1_I Mad3/BU 25.7 1.8E+02 0.0039 25.4 5.4 44 161-204 80-123 (125)
426 PF04461 DUF520: Protein of un 25.2 1.4E+02 0.0031 27.0 4.8 78 636-715 64-142 (160)
427 PRK14958 DNA polymerase III su 25.1 8.8E+02 0.019 27.1 12.2 78 170-255 191-281 (509)
428 PRK05414 urocanate hydratase; 24.8 6E+02 0.013 28.0 10.0 176 312-505 218-437 (556)
429 PRK14136 recX recombination re 24.6 7.7E+02 0.017 25.2 16.3 84 250-364 158-241 (309)
430 PF03943 TAP_C: TAP C-terminal 24.4 53 0.0012 23.3 1.7 22 486-507 28-49 (51)
431 PF07575 Nucleopor_Nup85: Nup8 24.2 6.6E+02 0.014 28.5 11.3 235 277-541 284-529 (566)
432 PF12862 Apc5: Anaphase-promot 24.1 3E+02 0.0065 22.3 6.4 55 481-535 8-69 (94)
433 PF09670 Cas_Cas02710: CRISPR- 24.0 9E+02 0.019 25.8 12.9 117 374-499 138-269 (379)
434 KOG4567 GTPase-activating prot 23.9 4.2E+02 0.009 27.1 8.1 58 422-483 263-320 (370)
435 TIGR02710 CRISPR-associated pr 23.9 9E+02 0.019 25.8 11.1 21 378-398 141-161 (380)
436 PRK08691 DNA polymerase III su 23.5 7.5E+02 0.016 28.8 11.2 91 159-256 179-282 (709)
437 PRK09857 putative transposase; 23.2 7.8E+02 0.017 25.1 10.5 28 512-539 245-272 (292)
438 PF09413 DUF2007: Domain of un 23.1 2.6E+02 0.0056 20.8 5.5 50 669-718 5-65 (67)
439 TIGR01503 MthylAspMut_E methyl 23.0 7E+02 0.015 27.2 10.1 48 345-395 67-114 (480)
440 cd08326 CARD_CASP9 Caspase act 23.0 4E+02 0.0086 21.3 6.7 36 381-420 44-79 (84)
441 COG0735 Fur Fe2+/Zn2+ uptake r 22.8 4.2E+02 0.0092 23.7 7.6 33 372-404 25-57 (145)
442 PF12796 Ank_2: Ankyrin repeat 22.0 2.3E+02 0.0049 22.3 5.3 13 424-436 74-86 (89)
443 PF02700 PurS: Phosphoribosylf 21.9 3E+02 0.0066 21.7 5.6 60 672-736 14-75 (80)
444 KOG0991 Replication factor C, 21.7 7.8E+02 0.017 24.2 12.1 36 468-505 236-271 (333)
445 KOG2034 Vacuolar sorting prote 21.5 1.4E+03 0.031 27.2 15.3 170 340-532 366-555 (911)
446 PF09090 MIF4G_like_2: MIF4G l 21.3 8.2E+02 0.018 24.3 10.1 17 485-501 106-122 (253)
447 PF10366 Vps39_1: Vacuolar sor 21.0 2.6E+02 0.0057 23.5 5.5 27 509-535 41-67 (108)
448 smart00638 LPD_N Lipoprotein N 21.0 1.2E+03 0.027 26.3 28.3 44 215-267 310-353 (574)
449 PF13934 ELYS: Nuclear pore co 20.6 8E+02 0.017 23.9 11.7 118 298-426 79-197 (226)
450 cd00245 Glm_e Coenzyme B12-dep 20.6 2.2E+02 0.0049 30.6 6.1 45 311-358 25-69 (428)
451 PF01514 YscJ_FliF: Secretory 20.5 1.9E+02 0.004 27.8 5.1 45 672-716 36-80 (206)
452 COG0735 Fur Fe2+/Zn2+ uptake r 20.5 4.3E+02 0.0094 23.6 7.2 62 319-381 8-69 (145)
453 PRK07003 DNA polymerase III su 20.4 1.2E+03 0.027 27.5 12.0 86 161-253 181-279 (830)
454 TIGR01228 hutU urocanate hydra 20.2 91 0.002 33.7 3.0 45 627-680 230-279 (545)
455 PF08424 NRDE-2: NRDE-2, neces 20.1 9.8E+02 0.021 24.7 17.8 119 419-538 48-185 (321)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-71 Score=654.39 Aligned_cols=538 Identities=17% Similarity=0.157 Sum_probs=421.4
Q ss_pred hHHHhhcCCCchhhhhhccchh----HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChh
Q 004324 88 GSEMRHLGEPVVEVIELEELPE----QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENE 161 (761)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~ 161 (761)
.+.+.+.+..+.+.++|++|+. .|+ .++..+++.+..+++..++..|... |+.||.+||+.+ +|++.+++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccchh
Confidence 4556677888999999999985 343 4677788999999999999887644 799999999998 899999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004324 162 TGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIY 241 (761)
Q Consensus 162 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~ 241 (761)
.+.++|..|.+.| +.||+.++|+||++|+++|++++|.++|++|+. ||.++||+||.+|+ +.|++++|+++|
T Consensus 205 ~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~---~~g~~~eAl~lf 276 (857)
T PLN03077 205 RGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYF---ENGECLEGLELF 276 (857)
T ss_pred hHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHH---hCCCHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999975 69999999999999 899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH------------------
Q 004324 242 NRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW------------------ 303 (761)
Q Consensus 242 ~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~------------------ 303 (761)
.+|.+. |+.||.+||+++|.+|++. |+++.|.+++..|.+.|+.||..+|+.++.
T Consensus 277 ~~M~~~-g~~Pd~~ty~~ll~a~~~~------g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 277 FTMREL-SVDPDLMTITSVISACELL------GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHc-CCCCChhHHHHHHHHHHhc------CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 999998 8999999999999999986 588888888888888888888888777663
Q ss_pred -----------HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004324 304 -----------LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (761)
Q Consensus 304 -----------~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 372 (761)
+.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||+
T Consensus 350 ~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 356677778888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
||++|+++|++++|.++|++|.+ +|+++||++|.+|+++|+.++|..+|++|.. ++.||..||+++|.+|++.|.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 99999999999999999998865 3677777777777777777777777777764 467777766665554444444
Q ss_pred HHHHHHHHHHHHh-CC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 453 HDRLHLAFSECLE-KC------------------------------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 453 ~~~a~~~~~~m~~-~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
++.+.+++..+.+ |+ .||..+||+||.+|++.|+.++|.++|++|.+.|
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444444433 33 5677777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCccChHHHHHHHHHHhhhhhhhc-ccccCCCchhhHHhHHHHH
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC-LKKYEIESAWMEKLDYVLSLNRKEVK-KPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l 579 (761)
+.||.+||+++|.+|++.|++++|.++|++|. +.|+.|+..+|..+..++......-+ ..+...++..||..+|++|
T Consensus 585 -~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 585 -VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred -CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 77777777777777777777777777777777 45666666655555444433322111 1111112234557777778
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCC
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGG 657 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g 657 (761)
|++|+.+|+.+.|+.+.+ ++++|++..+|++++++|+..|+|++|.+ +...|.++|+.++.-..|+-+++
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~--------vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR--------VRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH--------HHHHHHHcCCCCCCCccEEEECC
Confidence 877777777777777766 77777777777777777777666665554 24555556666665555555554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-67 Score=607.79 Aligned_cols=537 Identities=12% Similarity=0.088 Sum_probs=463.3
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004324 113 RAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYM 190 (761)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 190 (761)
...+..+++.+...++..+++.|...+ -+.|+..++..+ .|.+.|.++.|+.+|+.|.. ||..+|+.+|.+|
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHH
Confidence 345667788899999999999886542 245677777655 88899999999999998853 7999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC
Q 004324 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~ 270 (761)
++.|+++.|.++|++|.+.|+.||..+||+||.+|+ +.|++++|.++|++|.+. |+.||.+||+++|.+|++.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~--- 520 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---KSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA--- 520 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC---
Confidence 999999999999999999999999999999999999 899999999999999998 8999999999999999987
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCh
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGFEEGKEVLLSVLRVCAKEGDV 348 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~ 348 (761)
|++++|.++|++|.+.|+.||..+|+.++ .+|++.|++++|.++|++|.. .|+.||.++|+++|.+|++.|++
T Consensus 521 ---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI--~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 521 ---GQVAKAFGAYGIMRSKNVKPDRVVFNALI--SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred ---cCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 69999999999999999999999999999 889999999999999999986 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428 (761)
Q Consensus 349 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 428 (761)
++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH
Q 004324 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 429 ~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|++++|.++|++|...| +.||.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCH
Confidence 9999999999999999999999999999999999987 999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh-hhhhhhcccccCCCchhhHHhHHHHHhhhhhhh
Q 004324 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS-LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE 586 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 586 (761)
.||+++|.+|++.|++++|.++|++|.+.|+.|+..++..+..+.. ...+... . . .....|+. .......
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~----l--~--~~v~~f~~-g~~~~~n 825 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA----L--G--EPVVSFDS-GRPQIEN 825 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh----h--h--hhhhhhhc-ccccccc
Confidence 9999999999999999999999999999999999888776642211 0111111 0 0 00122211 1111122
Q ss_pred hhhhHHHHHHH----hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCCcccCC
Q 004324 587 SDEKRKRHMIR----FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSV 662 (761)
Q Consensus 587 g~~~~a~~~~~----~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~ 662 (761)
+..++|..+++ .++.|+..++ ..+...+.+.+.+.. +..++.+|...+..|+..+|+++|+|+++
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~-~~vL~cl~~~~~~~~--------~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-- 894 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVL-SQVLGCLQLPHDATL--------RNRLIENLGISADSQKQSNLSTLVDGFGE-- 894 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcccccHHH--------HHHHHHHhccCCCCcchhhhHHHHHhhcc--
Confidence 33456777766 6778887744 444444444443333 33457777778889999999999999753
Q ss_pred CcEEEEeccCHHHHHHHHHHHhhcCCceeEeecCc
Q 004324 663 GDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGR 697 (761)
Q Consensus 663 ~~~~~~~~g~~~e~~~l~~~m~~~gl~~~~~~~~~ 697 (761)
..++|..++++|...|+.|++.....
T Consensus 895 ---------~~~~A~~l~~em~~~Gi~p~~~~~~~ 920 (1060)
T PLN03218 895 ---------YDPRAFSLLEEAASLGVVPSVSFKKS 920 (1060)
T ss_pred ---------ChHHHHHHHHHHHHcCCCCCcccccC
Confidence 24789999999999999999986555
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=610.92 Aligned_cols=524 Identities=14% Similarity=0.113 Sum_probs=463.2
Q ss_pred CcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004324 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (761)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l 221 (761)
++.-.|..+ .|++.|+++.|+++|++|.+.|.++++..+++.++.+|++.|.+++|.++|+.|+. ||..+||.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 344445544 77799999999999999999997788999999999999999999999999999975 899999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (761)
|.+|+ +.|++++|.++|++|.+. |+.||.++|+++|.+|++. |++++|.++|++|.+.|+.||..+|+.+
T Consensus 444 L~a~~---k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~------G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 444 MSVCA---SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKS------GKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999 799999999999999998 8999999999999999986 6999999999999999999999999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHH
Q 004324 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE--SDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~ 379 (761)
+ .+|++.|++++|.++|++|.+.|+.||.+||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 514 I--~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 I--DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred H--HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 8 89999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
+|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 460 FSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 460 ~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
|++|.+ |+.||..+|++||.+|+++|++++|.++|++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999998 999999999999999999999999999999999999 999999999999999999999999999999998887
Q ss_pred ccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccchhhHHHHHHH
Q 004324 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~~~~~~~l~~~ 614 (761)
.|+ ..+|++|+.+|++.|++++|.++++ .++.|+.. .|..+..+
T Consensus 751 ~Pd-------------------------------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~-tynsLIgl 798 (1060)
T PLN03218 751 CPN-------------------------------TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV-MCRCITGL 798 (1060)
T ss_pred CCC-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 665 7789999999999999999999988 56677655 55556666
Q ss_pred H----HhhhhccCCC-----------CccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHH
Q 004324 615 Y----DQYHEWLHPS-----------FKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALV 679 (761)
Q Consensus 615 ~----~~~g~~~~a~-----------~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l 679 (761)
| .+++...++. ..+..+|..+|++|++.|+.||.+||+.++++++. .+..+.+..+
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------~~~~~~~~~m 869 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL---------PHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 3 4444432221 13446688899999999999999999999977766 6778888888
Q ss_pred HHHHhhcCCceeEeecCcEEEEE--EeCCCHHHHHHhhccccchhhhh
Q 004324 680 FKTLKARSLDCRVKKKGRVFWIG--FLGSNSTLFWKLIEPYVLDELKE 725 (761)
Q Consensus 680 ~~~m~~~gl~~~~~~~~~~~~i~--i~~~~~~~~~~li~~~~~~~m~~ 725 (761)
++.|...+..+........+.-+ ........+.++.+-.++|++.+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCccc
Confidence 88887666554432222111100 11233455556666667777654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-66 Score=601.44 Aligned_cols=516 Identities=17% Similarity=0.165 Sum_probs=418.6
Q ss_pred HHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 004324 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (761)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (761)
.+|..+++.+...++..++..|...+ ++.||..||+.+ +|++.++++.|.++|..|.+.| +.||..+||.|+++|+
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHh
Confidence 55777777888888888888776432 467888888887 7888888888888888888888 8888888888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCC
Q 004324 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGL 271 (761)
Q Consensus 192 ~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~ 271 (761)
++|++++|+++|++|++ ||.++||++|.+|+ +.|++++|+++|++|.+. |+.||..||+.+|.+|++.
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~---~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~---- 237 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLV---DAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGL---- 237 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---HCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcC----
Confidence 88888889888888865 68888899988888 788888888888888887 7888888888888888876
Q ss_pred chhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
|.++.+.+++..+.+.|+.||..+++.++ .+|++.|++++|.++|++|. .+|.++||++|.+|++.|++++|
T Consensus 238 --~~~~~~~~l~~~~~~~g~~~d~~~~n~Li--~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 --GSARAGQQLHCCVLKTGVVGDTFVSCALI--DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred --CcHHHHHHHHHHHHHhCCCccceeHHHHH--HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 48888888888888888888888888887 78888888888888888885 35888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
.||..+||+||.+|++.|+.++|.++|++|.+ |+.||..||+++|.+|++.|.+++|.++|+.|.+...+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 36888888888888888888888888888887 888888888888888888888888888888887642388888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhh
Q 004324 511 NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590 (761)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 590 (761)
++||.+|++.|++++|.+++++|. + . |+..+|++||.+|+.+|+++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~---~--~-----------------------------p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP---F--K-----------------------------PTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC---C--C-----------------------------CCHHHHHHHHHHHHHcCCcH
Confidence 888888888888888888887662 2 2 23677999999999999999
Q ss_pred HHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEE
Q 004324 591 RKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLK 668 (761)
Q Consensus 591 ~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~ 668 (761)
.|+.+++ ++++|++...|++++++|++.
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~-------------------------------------------------- 541 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSS-------------------------------------------------- 541 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhC--------------------------------------------------
Confidence 9998887 778888777888888888774
Q ss_pred eccCHHHHHHHHHHHhhcCCc----eeEeecCcEEEEEEeCCCH------------HHHHHhhccccchhhhhcccCCCc
Q 004324 669 LKVSSEGIALVFKTLKARSLD----CRVKKKGRVFWIGFLGSNS------------TLFWKLIEPYVLDELKEDLLNEGS 732 (761)
Q Consensus 669 ~~g~~~e~~~l~~~m~~~gl~----~~~~~~~~~~~i~i~~~~~------------~~~~~li~~~~~~~m~~~~~~~~~ 732 (761)
|.|++|.++++.|+++|+. ++|+..++..+.++.++.. +...++.+..+.|+..+.++..++
T Consensus 542 --G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 542 --GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred --CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 4555555566666555554 5555555555666655433 223334455567777777777777
Q ss_pred ccccccccc
Q 004324 733 EYRKLDTQN 741 (761)
Q Consensus 733 ~~~~~~~~~ 741 (761)
+++|..+.+
T Consensus 620 ~~~~~~~~~ 628 (697)
T PLN03081 620 DEEKVSGRY 628 (697)
T ss_pred HHHHHHHHh
Confidence 777766677
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-66 Score=611.35 Aligned_cols=572 Identities=12% Similarity=0.057 Sum_probs=465.4
Q ss_pred HHhhcCCCchhhhhhccchhH------H-HHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCCh
Q 004324 90 EMRHLGEPVVEVIELEELPEQ------W-RRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIREN 160 (761)
Q Consensus 90 ~~~~l~~~~~~~~~~~~~~~~------~-~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~ 160 (761)
.+.+.+..+.+..+|+.++.. . ...++....+.+....+..++..+... +..++...++.+ .|++.|++
T Consensus 60 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~n~li~~~~~~g~~ 137 (857)
T PLN03077 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGEL 137 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhCCCh
Confidence 333444444555555554320 0 023344444455555555555554433 456777777776 67788888
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSI 240 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l 240 (761)
+.|+++|+.|. .+|+.+||++|.+|++.|++++|.++|++|...|+.||.+||+++|.+|+ +.++++.+.++
T Consensus 138 ~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~---~~~~~~~~~~~ 209 (857)
T PLN03077 138 VHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG---GIPDLARGREV 209 (857)
T ss_pred HHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC---CccchhhHHHH
Confidence 88888888884 35777888888888888888888888888888888888888888888887 67888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHH
Q 004324 241 YNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320 (761)
Q Consensus 241 ~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~ 320 (761)
+.+|.+. |+.||..+||++|.+|++. |++++|.++|++|.. ||..+|+.++ .+|++.|+.++|+++|
T Consensus 210 ~~~~~~~-g~~~~~~~~n~Li~~y~k~------g~~~~A~~lf~~m~~----~d~~s~n~li--~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 210 HAHVVRF-GFELDVDVVNALITMYVKC------GDVVSARLVFDRMPR----RDCISWNAMI--SGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHc-CCCcccchHhHHHHHHhcC------CCHHHHHHHHhcCCC----CCcchhHHHH--HHHHhCCCHHHHHHHH
Confidence 8888877 7888888888888888875 589999999999863 5667777777 8899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 004324 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400 (761)
Q Consensus 321 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (761)
++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. |
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 352 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K 352 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLE 479 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~ 479 (761)
|.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+++.|.++++.|.+ |+.|+..+||+||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhh-----
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSL----- 554 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l----- 554 (761)
+|+++|++++|.++|++|.+ ||.++|++||.+|+++|+.++|+++|++|.+ ++.|+..++..+..+..-
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999975 4788999999999999999999999999985 688888887665443321
Q ss_pred -hhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhccccchhhHHHHHHHHHhhhhccCCCCccccCCc
Q 004324 555 -NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGR 633 (761)
Q Consensus 555 -~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~ 633 (761)
++......... ...+|..++++|+.+|++.|+++.|.++++.. +.+...|+.++..|++.|+.++|..
T Consensus 507 ~~~~i~~~~~~~--g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~------- 575 (857)
T PLN03077 507 CGKEIHAHVLRT--GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE------- 575 (857)
T ss_pred HhHHHHHHHHHh--CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHH-------
Confidence 22222111112 22345888999999999999999999888833 4456688889999999888777665
Q ss_pred ccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHHh-hcCCceeEeecCcEEEEEEeCCCHHHHH
Q 004324 634 LVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLK-ARSLDCRVKKKGRVFWIGFLGSNSTLFW 712 (761)
Q Consensus 634 ~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m~-~~gl~~~~~~~~~~~~i~i~~~~~~~~~ 712 (761)
+|.+|++.|+.||.+||+++|.+|.+ .|.++++.++++.|. ++|+.|++.........+......+.-.
T Consensus 576 -lf~~M~~~g~~Pd~~T~~~ll~a~~~---------~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 576 -LFNRMVESGVNPDEVTFISLLCACSR---------SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred -HHHHHHHcCCCCCcccHHHHHHHHhh---------cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 69999999999999999999999998 899999999999997 7899998754433333333444444444
Q ss_pred Hhh
Q 004324 713 KLI 715 (761)
Q Consensus 713 ~li 715 (761)
+++
T Consensus 646 ~~~ 648 (857)
T PLN03077 646 NFI 648 (857)
T ss_pred HHH
Confidence 444
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-58 Score=531.98 Aligned_cols=450 Identities=15% Similarity=0.158 Sum_probs=414.4
Q ss_pred cCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004324 142 LRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (761)
Q Consensus 142 ~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~ 219 (761)
.+++..+++.+ .+.+.|++++|+++|++|...+.+.||..+|++++.+|++.++++.|.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34455556555 7889999999999999999876688999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
++|.+|+ +.|++++|.++|++|.+ ||.++||++|.+|++. |++++|.++|++|.+.|+.|+..+|+
T Consensus 163 ~Li~~y~---k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~------g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 163 RVLLMHV---KCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDA------GNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHHHHh---cCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHC------cCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 9999999 89999999999999953 8999999999999987 69999999999999999999999999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.++ .++++.|..+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ +|+++||+||.+|++
T Consensus 229 ~ll--~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~ 302 (697)
T PLN03081 229 VML--RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYAL 302 (697)
T ss_pred HHH--HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHh
Confidence 888 88899999999999999999999999999999999999999999999999999964 588999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK-KY 538 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 538 (761)
|++|. .||..+||+||.+|++.|+.++|.++|++|.+.| +.||.+||+++|.+|++.|++++|.++|+.|.+. |+
T Consensus 383 f~~m~---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCC---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 99997 6899999999999999999999999999999999 9999999999999999999999999999999852 44
Q ss_pred ccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHh
Q 004324 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~ 617 (761)
.|+ ..+|+.++.++++.|++++|.++++ ....|+.. .|..|.+.|..
T Consensus 459 ~p~-------------------------------~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~ 506 (697)
T PLN03081 459 KPR-------------------------------AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-MWAALLTACRI 506 (697)
T ss_pred CCC-------------------------------ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 333 6779999999999999999999998 66677654 68889999999
Q ss_pred hhhccCCCCccccCCcccchhhhhhccCcc-ceeeeeeeCC
Q 004324 618 YHEWLHPSFKFWPKGRLVIPKLIHRWLTPR-ALAYWFMYGG 657 (761)
Q Consensus 618 ~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd-~~ty~~li~g 657 (761)
.|+++.|.. ++++++ ++.|+ ..+|..|+++
T Consensus 507 ~g~~~~a~~--------~~~~l~--~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 507 HKNLELGRL--------AAEKLY--GMGPEKLNNYVVLLNL 537 (697)
T ss_pred cCCcHHHHH--------HHHHHh--CCCCCCCcchHHHHHH
Confidence 988777665 366665 45664 5688777775
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.1e-25 Score=265.67 Aligned_cols=493 Identities=14% Similarity=0.052 Sum_probs=312.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.... +...+..++..+. +.|
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~---~~~ 445 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYL---RSG 445 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHH---hcC
Confidence 5556666777777776666653 345556666666666666666666666666654322 2234444555565 567
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
++++|+.++.++... ..++..++..+...+... |++++|...|+++.+.... +...+..+ +..+...|+
T Consensus 446 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~-~~~~~~~l--a~~~~~~g~ 514 (899)
T TIGR02917 446 QFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK------GDLAKAREAFEKALSIEPD-FFPAAANL--ARIDIQEGN 514 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCC-cHHHHHHH--HHHHHHCCC
Confidence 777777777776653 344555666666666554 4777777777777665432 22223223 255666777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
+++|...|+++.... ..+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776653 235666777777777777777777777777666532 456666777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
+.+. .+.+..+|..+..+|...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+..+.+..
T Consensus 593 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 593 AADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 7654 34466677777777777777777777777777643 334566777777777777777777777777765556677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
+|..++..+...|++++|.++++.+...+ +++...+..+...+.+.|++++|.+.|+++.+.+ |++..+..+..++
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 77777777777777777777777777764 4566677777777777777777777777777543 3333333332222
Q ss_pred hh-hh-----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCC
Q 004324 553 SL-NR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHP 624 (761)
Q Consensus 553 ~l-~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a 624 (761)
.. ++ +.+...+. ..| .+..++..+...|...|+.++|...++ +...|+++..+..++.+|...|+ .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 11 11 00000000 011 124455555555666666666666665 45556555555555555555555 332
Q ss_pred CC--------------------------ccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHH
Q 004324 625 SF--------------------------KFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIAL 678 (761)
Q Consensus 625 ~~--------------------------~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~ 678 (761)
.. +.+.+|.+.++++++.+.. +..+|..+...+.. .|..++|..
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~ 892 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA---------TGRKAEARK 892 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH---------cCCHHHHHH
Confidence 22 3445555678888887655 77788888888888 899999999
Q ss_pred HHHHHh
Q 004324 679 VFKTLK 684 (761)
Q Consensus 679 l~~~m~ 684 (761)
+++.|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 998874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.9e-23 Score=251.96 Aligned_cols=506 Identities=14% Similarity=0.100 Sum_probs=390.0
Q ss_pred HHHhhcCCCchhhhhhccc----hh--HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcc--hhhhh-HHHhccCC
Q 004324 89 SEMRHLGEPVVEVIELEEL----PE--QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQED--GTYLA-VHCMRIRE 159 (761)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~~----~~--~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~--~t~~~-~~~~~~~~ 159 (761)
......+..+.+.+.|+.. |. .....+-..+...+....+...+...... .|+. ..+.. ..+.+.|+
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL----DPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh----CCcchhhHHHHHHHHHhcCC
Confidence 3444455666666666543 21 11112222233455556565555544322 2322 22222 27778999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~ 239 (761)
++.|.++++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+...+..+...+. +.|++++|.+
T Consensus 447 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~---~~g~~~~A~~ 520 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI---QEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH---HCCCHHHHHH
Confidence 999999999998864 66888999999999999999999999999987643 25667888888888 7999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHH
Q 004324 240 IYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319 (761)
Q Consensus 240 l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l 319 (761)
.|+++.+. ...+..++..+...+.+. |+.++|..+++++.+.+.. +...+.. .+..+...|++++|..+
T Consensus 521 ~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~-~~~~~~~--l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 521 RFEKVLTI--DPKNLRAILALAGLYLRT------GNEEEAVAWLEKAAELNPQ-EIEPALA--LAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcc-chhHHHH--HHHHHHHCCCHHHHHHH
Confidence 99999875 344666777777777764 5999999999999877643 3333333 34778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
++.+.... ..+..+|..+..+|.+.|++++|...|+.+.+.... +...+..+...|.+.|++++|..+|+++.+. .+
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 666 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL-KP 666 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC
Confidence 99998753 457788999999999999999999999999887643 6678889999999999999999999999875 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
.+..+|..++..+...|++++|..+++.+.+.+ ..+...+..+...|.+.|++++|.+.|..+.+. .|+..++..++.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCchHHHHHHH
Confidence 468889999999999999999999999999876 556788889999999999999999999998863 344578888999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh--
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK-- 557 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~-- 557 (761)
+|.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.. ..++..+..++.+......
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999874 6678899999999999999999999999999643 3455555555443322111
Q ss_pred ---hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 558 ---EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 558 ---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.+++.+.. .|+ +..++..+...+...|+.++|...++ +.+.|.++..+..++.+|.+.|++++|..
T Consensus 822 A~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 822 ALEYAEKALKL--APN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHhh--CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 11111111 111 35667778888899999999999998 88899999999999999999999888876
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.5e-18 Score=187.82 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=193.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~ 379 (761)
+..+...|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..|..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 356667778888888888877642 345778889999999999999999999999887654322 245667888899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+-.....+++.++.+|++.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998753 3346678888899999999999999999998864222356788999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHc
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~ 536 (761)
++.+.+. .|+...+..++..|.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++|..++++|.++
T Consensus 272 l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998863 466677799999999999999999999999886 4899999999988775 56999999999999999
Q ss_pred CCccChH
Q 004324 537 KYEIESA 543 (761)
Q Consensus 537 g~~~~~~ 543 (761)
++.++|+
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 9888887
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=3.7e-16 Score=190.15 Aligned_cols=370 Identities=9% Similarity=0.001 Sum_probs=205.7
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH------------
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFV------------ 371 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~------------ 371 (761)
..+...|++++|+..|++..+.. .-+..++..+..+|.+.|++++|...|++..+..... ....|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44566788888888888887652 1256777888888888888888888888888765432 112221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 12345677888888888888887752 3355667777888888888888888888888743 223444444444442 22
Q ss_pred CHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 452 MHDRLHLAFSECLEKC---------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
+.++|..+++.+.... .-....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 3444444443322100 0001122333444445555555555555555432 1233344445555555555
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHH--------------------------------------HHhhhhhhhc----
Q 004324 523 FVKAEKIYDLMCLKKYEIESAWMEKLDY--------------------------------------VLSLNRKEVK---- 560 (761)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~--------------------------------------~~~l~~~~~~---- 560 (761)
+++|+..++++.+.. .-++...-.+.. .+.+++....
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555554311 112211100000 0000000000
Q ss_pred ---ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC---------
Q 004324 561 ---KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF--------- 626 (761)
Q Consensus 561 ---~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~--------- 626 (761)
.......+. +...+..|...+...|+.++|+..++ +.+.|+++..+..++.+|...|++++|..
T Consensus 590 ~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 590 AEAEALLRQQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 000000111 23345556666778888888888887 77788888888888888888888887765
Q ss_pred -----------------ccccCCcccchhhhhhccCccc-----eeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHH-
Q 004324 627 -----------------KFWPKGRLVIPKLIHRWLTPRA-----LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTL- 683 (761)
Q Consensus 627 -----------------~~~~~a~~~~~~m~~~g~~Pd~-----~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m- 683 (761)
+...+|.+++++.+........ ..+.-+-..+.. .|..++|...++.-
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~---------~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ---------TGQPQQALETYKDAM 738 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Confidence 3445555667776654322111 122111122233 78888888887766
Q ss_pred hhcCCceeE
Q 004324 684 KARSLDCRV 692 (761)
Q Consensus 684 ~~~gl~~~~ 692 (761)
...|+.|..
T Consensus 739 ~~~~~~~~~ 747 (1157)
T PRK11447 739 VASGITPTR 747 (1157)
T ss_pred hhcCCCCCC
Confidence 455666543
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.4e-17 Score=180.28 Aligned_cols=305 Identities=12% Similarity=0.142 Sum_probs=206.5
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS---EMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd---~~~~~~li~~~~~~~ 229 (761)
.....|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 4456678888888888888765 55667788888888888888888888888877532221 245677777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|++++|+.+|+++.+. -.++..+++.+...+... |++++|...++.+.+.+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~------------ 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVE------------ 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHH------------
Confidence 678888888888888763 234566677777776664 477777777777765543221100
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (761)
....+..+...+.+.|++++|.+.++++.+.... +...+..+...|.+.|++++|.++
T Consensus 179 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 179 ---------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0112344555666777777777777777665432 345666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
|+++.+.+......+++.++.+|++.|++++|...++.+.+. .|+...+..++..|.+.|++++|..++.++.+. .|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Cc
Confidence 777765432222345677777777777777777777777764 355556677777777778888888877776653 57
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 470 NRTIYGIYLESLKN---AGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 470 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
+..+++.++..+.. .|+.++|..+|++|.+++ +.|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 77777777777664 457778888888887766 555554
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=4.5e-17 Score=167.66 Aligned_cols=444 Identities=12% Similarity=0.070 Sum_probs=351.3
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
.....+++...+--...++.. +.-..+|+.+.+.+-..|++.+|+.+++.|.+.... .+..|-.+-.++. ..|+
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~---~~~~ 165 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALV---TQGD 165 (966)
T ss_pred hhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHH---hcCC
Confidence 334445555444444444443 456778999999999999999999999999986332 5678999999999 7999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (761)
.+.|.+.|.+..+ +.|+.+...+-+..+.+.. |++.+|..-+-+.++....- ...++-| ...+-..|+.
T Consensus 166 ~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~-----Grl~ea~~cYlkAi~~qp~f-AiawsnL--g~~f~~~Gei 234 (966)
T KOG4626|consen 166 LELAVQCFFEALQ---LNPDLYCARSDLGNLLKAE-----GRLEEAKACYLKAIETQPCF-AIAWSNL--GCVFNAQGEI 234 (966)
T ss_pred CcccHHHHHHHHh---cCcchhhhhcchhHHHHhh-----cccchhHHHHHHHHhhCCce-eeeehhc--chHHhhcchH
Confidence 9999999999987 5799888877777777765 58999999988887655321 1122222 2556678899
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
-.|+..|++..+. .|+ ...|-.|-..|...+.++.|..-+.+.....+. ..+++..|...|-..|.++-|+..+++
T Consensus 235 ~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999988764 555 457888999999999999999988887765432 467788888899999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004324 393 MQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (761)
Q Consensus 393 m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (761)
..+. .|+ ...|+.|..++-..|++.+|...+...... .|+ ..+.+.|...|...|.+++|..+|....+-.+--
T Consensus 312 al~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 312 ALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred HHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence 8875 454 568999999999999999999999998884 444 5688999999999999999999999988754555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
...+|.|...|-+.|++++|...+++..+ |.|+ ..+|+.+-..|-..|+++.|++.+.+.+. ++|..
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~----- 455 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTF----- 455 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHH-----
Confidence 67899999999999999999999999987 5676 47999999999999999999999999885 67765
Q ss_pred HHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCc
Q 004324 550 YVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFK 627 (761)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~ 627 (761)
.-..+.|.+.+...|++.+|+..++ +.++|+.+.+|-.+.....--.+|.+-.+
T Consensus 456 -----------------------AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~- 511 (966)
T KOG4626|consen 456 -----------------------AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK- 511 (966)
T ss_pred -----------------------HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH-
Confidence 6678889999999999999999999 99999999999888888877778877443
Q ss_pred cccCCcccchhhhhhccCccceeeeeeeCC
Q 004324 628 FWPKGRLVIPKLIHRWLTPRALAYWFMYGG 657 (761)
Q Consensus 628 ~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g 657 (761)
++++-..++++-++++.-|.+.-+-+|+--
T Consensus 512 ~~~kl~sivrdql~~~rlpsvhP~hsm~yp 541 (966)
T KOG4626|consen 512 RMKKLVSIVRDQLEKNRLPSVHPHHSMLYP 541 (966)
T ss_pred HHHHHHHHHHHHHhhhcCCccCcccccccc
Confidence 122222234444444455666655555433
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.1e-14 Score=177.20 Aligned_cols=482 Identities=11% Similarity=-0.009 Sum_probs=273.6
Q ss_pred HhhcCCccchhhHHHHHHhhhcccCCcchhh----hhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 004324 119 LCKELPSHKGGTLVRILNAQKKWLRQEDGTY----LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKER 194 (761)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~----~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 194 (761)
+...+..++|...++.+... .|+.... ........++.++|.+.++.+.+.. +.+...+..+...+.+.|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccC
Confidence 45667777777766665432 2333322 2223345689999999999999885 667888889999999999
Q ss_pred ChhHHHHHHHHHHHCCC------------------CCC-HHHHHHH----------------------------------
Q 004324 195 KFAKCRDIFDDIINQGR------------------VPS-EMTFHIL---------------------------------- 221 (761)
Q Consensus 195 ~~~~A~~~f~~m~~~g~------------------~pd-~~~~~~l---------------------------------- 221 (761)
+.++|+..|+++..... .|+ ...+...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865321 000 0011110
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH-HH--
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK-DI-- 297 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-- 297 (761)
-..+. +.|++++|+..|++..+. .| +...+..+-..+.+. |++++|+..|++..+....... ..
T Consensus 276 G~~~~---~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~------g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 276 GLAAV---DSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQ------GDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHH---HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 11222 457777777777777653 34 344444444444443 4777777777777665533211 10
Q ss_pred --------HHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004324 298 --------YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA 369 (761)
Q Consensus 298 --------~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 369 (761)
+..+.....+.+.|++++|...|++..... ..+...+..+..++...|++++|++.|+++.+.... +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 111122344566777777777777776652 124455666667777777777777777777765432 3445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 441 (761)
+..+...|. .++.++|..+++.+....-. .....+..+...+...|++++|.+.+++.++.. +-+...+.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 555555553 23455555555443221000 001123334455566777777777777777643 12345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------------------
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------------------- 501 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------- 501 (761)
.+...|.+.|++++|...++++.+..+.+...+..+...+...|+.++|...++.+....
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 677777777777777777777665333344433333333333444444444433321110
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhh------h
Q 004324 502 ------------------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR------K 557 (761)
Q Consensus 502 ------------------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~------~ 557 (761)
..+++...+..+...+.+.|++++|++.|++..+.. +-+++..-.++.++.... +
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 023455566677778888888888888888888632 223444333333332111 1
Q ss_pred hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch------hhHHHHHHHHHhhhhccCCCC
Q 004324 558 EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR------MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~------~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.++. .....|+ +..++..+..++...|+.++|.+.++ +...|+++ ..+..++.++...|++++|..
T Consensus 659 ~l~~--ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 659 QLAK--LPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHH--HhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 1111 1111111 24455556666777888888888888 44444433 234446788888888888886
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=2.1e-16 Score=162.83 Aligned_cols=414 Identities=13% Similarity=0.068 Sum_probs=325.8
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
.-+.|++..|.+....+-.+. +.+....-.+-..+....+.+....--..-.+.. .--..+|..+-..+- ..|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k---erg~ 131 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK---ERGQ 131 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH---Hhch
Confidence 337799999988776665554 3333333344455666777766554433333332 124678999999998 7899
Q ss_pred HHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 234 LDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+++|+.+|+.|.+ ++|+-. .|..+-.++... |+.+.|.+.|.+.+..+ |+........ .......|+
T Consensus 132 ~~~al~~y~~aie---l~p~fida~inla~al~~~------~~~~~a~~~~~~alqln--P~l~ca~s~l-gnLlka~Gr 199 (966)
T KOG4626|consen 132 LQDALALYRAAIE---LKPKFIDAYINLAAALVTQ------GDLELAVQCFFEALQLN--PDLYCARSDL-GNLLKAEGR 199 (966)
T ss_pred HHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhc------CCCcccHHHHHHHHhcC--cchhhhhcch-hHHHHhhcc
Confidence 9999999999997 467654 444444445443 58999999999888765 3322221111 122344677
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
+++|...|.+..+. .|. .+.|+.|-..+-..|++..|.+-|++..+.++. =...|-.|-..|-..+.+++|+..+.
T Consensus 200 l~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 200 LEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred cchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHH
Confidence 88888888877664 343 457888888899999999999999999987654 25678889999999999999999998
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 392 EMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 392 ~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
+.... +|+ .+.|..|...|-..|.++.|...+++.++. .|+ ...|+.|..++-..|++.+|.+.+.+.+.-++-
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 77654 454 567888888899999999999999999884 565 679999999999999999999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
...+.+.|...|...|.+++|..+|....+- -|. ...++.|...|-+.|++++|+..+++.++ ++|..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~f---- 421 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTF---- 421 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchH----
Confidence 8889999999999999999999999998884 355 56899999999999999999999999984 66664
Q ss_pred HHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
...|+.+-..+...|+...|.+.+. +.++|.-..++..|+.+|...|+..+|..
T Consensus 422 ------------------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 422 ------------------------ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ------------------------HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 6678888889999999999999988 89999999999999999999999888875
Q ss_pred c
Q 004324 627 K 627 (761)
Q Consensus 627 ~ 627 (761)
.
T Consensus 478 s 478 (966)
T KOG4626|consen 478 S 478 (966)
T ss_pred H
Confidence 3
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=7.3e-14 Score=159.65 Aligned_cols=325 Identities=14% Similarity=0.090 Sum_probs=178.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|++.++...+.... +...|..+-.+|. ..|
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~---~lg 208 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD---GLG 208 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH---HcC
Confidence 455789999999999998875 456778888999999999999999999998876322 5667888888888 689
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHH--------
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLI-------- 302 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li-------- 302 (761)
++++|+.-|.......+..+. ....++..+.. ..+........+.... |.......+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~--~~~~~~~~~l~----------~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE--QSAQAVERLLK----------KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHH----------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 999999988776654222221 11111111111 1111111111111100 1110000000
Q ss_pred -------------------H-H---HhhccCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004324 303 -------------------W-L---HSYQDNIDKERISLLKKEMQQAG-FEE-GKEVLLSVLRVCAKEGDVEDAEKTWLR 357 (761)
Q Consensus 303 -------------------~-~---~~~~~~g~~~~a~~l~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 357 (761)
. . .-....+++++|.+.|++....+ ..| +...++.+...+...|++++|...++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0 00011234555555555555443 122 223444555555555666666666655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004324 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437 (761)
Q Consensus 358 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 437 (761)
..+..+. ....|..+...|...|++++|...|++..+.. +-+...|..+...+...|++++|...|++.++.. +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 5554322 23455555555555666666666665554431 2234455555555555666666666665555532 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..+..+...|.+.|++++|...|+...+..+.+...|+.+...|...|++++|.+.|++...
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555556666666666555544444455555555556666666666666555544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=5.4e-14 Score=160.23 Aligned_cols=369 Identities=12% Similarity=0.010 Sum_probs=259.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|+++.|+.+++...... +-+......++......|++++|...|+++.+.... +...|..+...+. +.|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~---~~g 124 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL---KSK 124 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH---HcC
Confidence 5668889999999988888875 334444555556666789999999999998876322 4556777777777 689
Q ss_pred CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (761)
++++|+..|++..+ +.|+. ..+..+...+... |++++|...++.+......+. ..+..+ ..+...|
T Consensus 125 ~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~-~a~~~~---~~l~~~g 191 (656)
T PRK15174 125 QYATVADLAEQAWL---AFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRG-DMIATC---LSFLNKS 191 (656)
T ss_pred CHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCH-HHHHHH---HHHHHcC
Confidence 99999999999886 34554 4455555555544 588999998888876654432 222222 2356678
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK----SL 387 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~ 387 (761)
++++|...++.+......++...+..+..++.+.|++++|.+.++.+.+..+. +...+..+...|.+.|+.++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 89999999988876643344555566677888999999999999998887644 57778888899999999886 78
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
..|++..... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+.+.+..
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888887652 3356678888899999999999999999988753 2245667778888999999999999998887633
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSC----NIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+.+...+..+..++...|+.++|.+.|++..+.. |+. ..| ..+-.++...+...+....+.++.-..-..+
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~---P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 425 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR---ASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIE 425 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---hhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCC
Confidence 3333445556778889999999999999887753 332 122 2222333333444444345555543333455
Q ss_pred hHHHH
Q 004324 542 SAWME 546 (761)
Q Consensus 542 ~~~~~ 546 (761)
++.++
T Consensus 426 ~~~~~ 430 (656)
T PRK15174 426 RDEWE 430 (656)
T ss_pred hHHHH
Confidence 55543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=5.2e-14 Score=160.85 Aligned_cols=391 Identities=10% Similarity=0.033 Sum_probs=282.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHH
Q 004324 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFR 262 (761)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~ 262 (761)
......|.+.|++++|.+.|++..+. .|+...|..+-.+|. +.|++++|++.+....+. .|+. ..+..+-.
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~---~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN---ALGDWEKVVEDTTAALEL---DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH---HhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 34456678999999999999998874 678888999988998 799999999999999874 4654 45555555
Q ss_pred HHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC--CCCCHHHH-----
Q 004324 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--FEEGKEVL----- 335 (761)
Q Consensus 263 ~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~----- 335 (761)
++... |++++|..-|......+...+......+. ..+. ..+.....+..+.. ..|.....
T Consensus 203 a~~~l------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 203 AYDGL------GKYADALLDLTASCIIDGFRNEQSAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCccHHHHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55554 59999999887765443222211111111 0000 01111111111100 00000000
Q ss_pred ----------------------HHHHHH------HHhcCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 004324 336 ----------------------LSVLRV------CAKEGDVEDAEKTWLRLLESD-NGI-PTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 336 ----------------------~~ll~~------~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~ 385 (761)
...+.. ....+++++|.+.|+...+.+ ..| ....|+.+...|...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 000111 123468999999999998865 223 45678888899999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
|+..|++..+. .|+ ..+|..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|...|++.+
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998875 344 5678888899999999999999999998863 3457889999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
+..+.+...|..+...+.+.|++++|+..|++..... +-+...|+.+...+...|++++|++.|++..+..-...+..
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 8667788899999999999999999999999998763 44678899999999999999999999999885321111100
Q ss_pred HHHHHHHHhhhhhhhcccccCCCchhhH-HhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhc
Q 004324 545 MEKLDYVLSLNRKEVKKPVSLNLSSEQR-ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEW 621 (761)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~ 621 (761)
.+ ...++..+..+...|++++|...++ +.++|++...+..++.+|.+.|++
T Consensus 505 --------------------------~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 505 --------------------------MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred --------------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 00 1112222222344689999999988 788999988889999999999999
Q ss_pred cCCCC
Q 004324 622 LHPSF 626 (761)
Q Consensus 622 ~~a~~ 626 (761)
++|..
T Consensus 559 ~eAi~ 563 (615)
T TIGR00990 559 DEALK 563 (615)
T ss_pred HHHHH
Confidence 98885
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=6.9e-14 Score=159.36 Aligned_cols=329 Identities=9% Similarity=0.057 Sum_probs=257.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-HH
Q 004324 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF-RA 263 (761)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll-~~ 263 (761)
-++..+.+.|++++|+.+++........+....++ +..+.. ..|++++|+..|+++... .|+.......+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l---~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~ 119 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPL---ASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHh---hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 44566778999999999999998875543333444 444555 589999999999999974 57654444444 34
Q ss_pred HHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA 343 (761)
Q Consensus 264 ~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 343 (761)
+... |++++|...+++..+.... +...+..+ +..+...|+.++|...++.+......+ ...+..+ ..+.
T Consensus 120 l~~~------g~~~~Ai~~l~~Al~l~P~-~~~a~~~l--a~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~ 188 (656)
T PRK15174 120 LLKS------KQYATVADLAEQAWLAFSG-NSQIFALH--LRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFL 188 (656)
T ss_pred HHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHH--HHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHH
Confidence 4443 5999999999999876532 23344444 367889999999999999887654332 2233333 4588
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL--- 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~--- 420 (761)
..|++++|..+++.+.+....++...+..+...+.+.|+.++|...|++..... +.+...+..+...|...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 999999999999998887644455566667788999999999999999998763 3467788889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 421 -TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 421 -A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|...|++..+.. +.+..++..+...+.+.|++++|...+++..+..+.+...+..+...|.+.|++++|...|+++..
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998853 335778999999999999999999999999885566778889999999999999999999999998
Q ss_pred CCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 500 DQTIGVNTRS-CNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 500 ~g~~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+ |+... +..+..++...|+.++|...|++..+.
T Consensus 347 ~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 347 EK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 64 55433 444567899999999999999999864
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=1.4e-13 Score=160.27 Aligned_cols=355 Identities=9% Similarity=0.032 Sum_probs=157.2
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
...|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+... .+...+..+...+. +.|++
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~---~~g~~ 99 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLA---DAGQY 99 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH---HCCCH
Confidence 34555555555555555422 33444455555555555555555555555544311 12334444444444 45555
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHH
Q 004324 235 DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKE 314 (761)
Q Consensus 235 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~ 314 (761)
++|+..+++..+. .|+...+..+-.++... |+.++|...++++.+.... +......+. ..+...+..+
T Consensus 100 ~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~------g~~~~Al~~l~~al~~~P~-~~~~~~~la--~~l~~~~~~e 167 (765)
T PRK10049 100 DEALVKAKQLVSG---APDKANLLALAYVYKRA------GRHWDELRAMTQALPRAPQ-TQQYPTEYV--QALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHCCChH
Confidence 5555555555542 23222232222222222 3555555555555554432 122222222 2333445555
Q ss_pred HHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCCHH-HH----HHHH
Q 004324 315 RISLLKKEMQQAGFEEGK------EVLLSVLRVCA-----KEGDV---EDAEKTWLRLLES-DNGIPTP-AF----VYKM 374 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li 374 (761)
.|+..++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 55555543321 1211 01111111111 11122 4455555555533 1111110 00 0112
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGS-AS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLN 449 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~ 449 (761)
.++...|+.++|+..|+.+.+.+.+ |+ ...+ +..+|...|++++|..+|+.+.+..-.. .......|..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 2333445556666666555554321 22 1111 3445555566666666555554422100 12234444445555
Q ss_pred cCCHHHHHHHHHHHHhCCC------------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCR------------PN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~------------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
.|++++|.++++.+.+..+ |+ ...+..+...+...|++++|+++++++... .+-+...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5666666655555554221 11 123344455555556666666666665554 233455555555
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~ 534 (761)
..+...|++++|++.+++..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAE 420 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55556666666666666555
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=9.6e-13 Score=130.63 Aligned_cols=351 Identities=14% Similarity=0.072 Sum_probs=259.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
.+.+..+|..||.++||--..+.|.+++.+-.....+.+..+||.+|.+-.. -...+++.+|.+. .+.||..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-------~~~K~Lv~EMisq-km~Pnl~ 274 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-------SVGKKLVAEMISQ-KMTPNLF 274 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-------hccHHHHHHHHHh-hcCCchH
Confidence 3556789999999999999999999999999988788899999999987663 2227899999998 7999999
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH-HHHHHHHHH----HcCCCC
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER-ISLLKKEMQ----QAGFEE 330 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~-a~~l~~~m~----~~g~~p 330 (761)
|||++|.+.++. |... -....|.+++.+|.+.|+.|...+|..++ ..+++.++..+ |..+..++. .+.++|
T Consensus 275 TfNalL~c~akf-g~F~-~ar~aalqil~EmKeiGVePsLsSyh~ii--k~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 275 TFNALLSCAAKF-GKFE-DARKAALQILGEMKEIGVEPSLSSYHLII--KNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred hHHHHHHHHHHh-cchH-HHHHHHHHHHHHHHHhCCCcchhhHHHHH--HHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999988775 2111 13446778899999999999999999888 56777776643 444444433 333444
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 331 ----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD----NGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 331 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
|..-|.+.+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-+..|+.|.-+-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 45567789999999999999999997665432 2222 233556888999999999999999999988888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHHHHHH-
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MH--------DR-----LHLAFSECL- 464 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g-~~--------~~-----a~~~~~~m~- 464 (761)
|+..+...++.+....|.++-.-+++..++..|...+...-.-++..+|+.. +. .. |..+++...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886555555555555555543 11 00 111111111
Q ss_pred -----hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 465 -----EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN---IILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 465 -----~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
+...-.....+...-.+.+.|+.++|.++|....+++.--|-.-..| -++.+-.+......|..+++-|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 02234455667777888999999999999998866553223333344 5556667788888899998888765
Q ss_pred CC
Q 004324 537 KY 538 (761)
Q Consensus 537 g~ 538 (761)
++
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 44
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=1e-12 Score=153.10 Aligned_cols=376 Identities=11% Similarity=0.037 Sum_probs=276.4
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+...|++++|.++++..++.. +.+...+..+...+.+.|++++|...+++..+... .+.. |..+...+. +.|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~---~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYK---RAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHH---HCC
Confidence 7889999999999999999874 66777888999999999999999999999988632 2445 777777777 799
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHH
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLH-NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK------DIYSGLIWLH 305 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~-~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~ 305 (761)
+.++|+..++++.+. .|+.... ..+...+.. . |..+.|...++.... .|+. ......+.+.
T Consensus 131 ~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~-~-----~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 131 RHWDELRAMTQALPR---APQTQQYPTEYVQALRN-N-----RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH-C-----CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999999974 4655443 333334433 2 488889988876653 2221 1111122111
Q ss_pred h---hccCCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHH
Q 004324 306 S---YQDNIDK---ERISLLKKEMQQA-GFEEGKE-VL----LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFVY 372 (761)
Q Consensus 306 ~---~~~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ 372 (761)
. ....+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+.+.. |+. .-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHH
Confidence 1 1122233 7788888888864 2333321 11 11244556789999999999999988643 332 2233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC--
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVETG-----------MKPL-- 436 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~pd-- 436 (761)
+...|...|++++|+.+|+++....-.. ....+..+..++.+.|++++|.++++.+.... -.|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5779999999999999999987642111 13456677778999999999999999998752 1233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
...+..+...+...|++++|.++++++....+.+...+..+...+...|++++|++.+++..... +-+...+..+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 23556778889999999999999999998778889999999999999999999999999999864 334677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
.+.+.|++++|+.+++++++. .|+......+....
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 899999999999999999963 34444445554444
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=7.3e-12 Score=146.13 Aligned_cols=357 Identities=8% Similarity=-0.031 Sum_probs=212.9
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK-ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ 231 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~ 231 (761)
.+...++++.|..++..+.+.+ +.+......|-..|.. .++ ++|..++.... +-|...+.++...|. +.
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi---~~ 260 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA---YR 260 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH---HC
Confidence 7778999999999999999997 4456667777778877 466 88888866432 248889999999999 79
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCC----CC--------------------CchhhHHHHHHHHHHHH
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP----GG--------------------LSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~----g~--------------------~~~g~~~~A~~~~~~m~ 287 (761)
|+.++|.++++++....--.|+..++--++.-..... .. ..++.++-++++.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 336 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL---- 336 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----
Confidence 9999999999998754222344444433332221110 00 0012233222221
Q ss_pred HcCCCcCHHHHHHHHHH----------------------------------HhhccCCCHHHHHHHHHHHHHc-C-CCCC
Q 004324 288 TSGLEIQKDIYSGLIWL----------------------------------HSYQDNIDKERISLLKKEMQQA-G-FEEG 331 (761)
Q Consensus 288 ~~~~~p~~~~~~~li~~----------------------------------~~~~~~g~~~~a~~l~~~m~~~-g-~~p~ 331 (761)
++.|.... ..... .-..+.|+.++|..+|+..... + -.++
T Consensus 337 --~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 --ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred --cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 11111111 11111 1123456667777777665541 1 2223
Q ss_pred HHHHHHHHHHHHhcCChHH---HHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHcCC
Q 004324 332 KEVLLSVLRVCAKEGDVED---AEKT----------------------WLRLLES-DN-GI--PTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~---a~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~ 382 (761)
.....-++..|.+.+.+.. +..+ .+..... +. .+ +...|..+..++.. |+
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 4444466666666555222 2111 1111111 11 12 45566666666665 67
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.++|...|.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766666554 255443333344445778888888888776543 34445556666777777888888888877
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+..+.+...+..+...+.+.|++++|...|++..+.. |+...|..+...+.+.|++++|+..|++..+
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776333444444444444445588888888888877643 6777777777778888888888888887775
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.8e-12 Score=125.72 Aligned_cols=316 Identities=14% Similarity=0.143 Sum_probs=240.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG--KERKFA-KCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~ 229 (761)
-....|.+..+.-+++.|...| .+.+..+--.|+..-+ ...++- .-++.|-.|.+.|-. +..+|
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----------- 190 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----------- 190 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----------
Confidence 5557788888999999999888 6777666655554432 333333 335677778777643 44455
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|.+.+ ++-+. ..-+..||.++|.++|+-. ..+.|.+++.+-.+...+.+..+++.+|-+..|..
T Consensus 191 K~G~vAd---L~~E~-----~PKT~et~s~mI~Gl~K~~------~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 KSGAVAD---LLFET-----LPKTDETVSIMIAGLCKFS------SLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ccccHHH---HHHhh-----cCCCchhHHHHHHHHHHHH------hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 5666655 33333 2234578999999999874 89999999999998888999999999997777655
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
. .+++.+|....+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 257 ~------K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 257 G------KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred c------HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 4 58899999999999999999999999999998765 5788999999999999999999999999988754
Q ss_pred -HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHh
Q 004324 386 -SLEIFREMQE----RLGSA----SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 386 -A~~~~~~m~~----~g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd---~~t~~~li~~~~~ 449 (761)
|..++.++.. +-++| |..-|-+.+..|.+..+.+.|.++..-+... -+.|+ .+-|..+..+.|.
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 5555555543 22222 4455778888888999999999887766531 13333 2346677888888
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 450 LGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
....+.-..+++.|.- -.-|+..+-..++.+....|+++-.-+++.+|+.-|
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8888888889988875 567888888888888888888888888888887766
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=3.8e-12 Score=148.42 Aligned_cols=462 Identities=10% Similarity=0.038 Sum_probs=244.1
Q ss_pred CCccchhhHHHHHHhhhcccCCcchhh-hhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004324 123 LPSHKGGTLVRILNAQKKWLRQEDGTY-LAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKC 199 (761)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~p~~~t~-~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 199 (761)
|....+...++.... +.|+.... ..+ .+...|++++|+...+...+.. +.|...+..+. ..+++++|
T Consensus 58 Gd~~~A~~~l~~Al~----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La----~i~~~~kA 127 (987)
T PRK09782 58 NDEATAIREFEYIHQ----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA----AIPVEVKS 127 (987)
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH----HhccChhH
Confidence 455555555554432 44544221 111 6667778888888888777764 44555555442 22777778
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH------HhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCc
Q 004324 200 RDIFDDIINQGRVPS-EMTFHILIVA------YLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272 (761)
Q Consensus 200 ~~~f~~m~~~g~~pd-~~~~~~li~~------~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~ 272 (761)
..+++++.+.. |+ ...+..+... + .-.+.++|.+.++ .... ...|+..+....+.-+....
T Consensus 128 ~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l----~y~q~eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l---- 195 (987)
T PRK09782 128 VTTVEELLAQQ--KACDAVPTLRCRSEVGQNAL----RLAQLPVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL---- 195 (987)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHhhccchh----hhhhHHHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH----
Confidence 88888877753 33 2222222222 2 1457777777777 3332 23334555555556666544
Q ss_pred hhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD-NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
|++++|+.++.++.+.+... ..-...+- ..|.. .++ +++..+++. .++-|...+..+...|.+.|+.++|
T Consensus 196 -~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~--~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 196 -KQWSQADTLYNEARQQNTLS-AAERRQWF--DVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred -hCHHHHHHHHHHHHhcCCCC-HHHHHHHH--HHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 47888888888888877543 22222222 24444 244 666666443 3335777888888889999999999
Q ss_pred HHHHHHHHhCCCC-CCHHHH--H----------------------------HHHHHHHHc--------------------
Q 004324 352 EKTWLRLLESDNG-IPTPAF--V----------------------------YKMEAYAKI-------------------- 380 (761)
Q Consensus 352 ~~~~~~m~~~g~~-~~~~~~--~----------------------------~li~~~~~~-------------------- 380 (761)
.++++++...... |...+| + .++..+.+.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 9888887654221 111111 0 012222222
Q ss_pred -------------------------------------------CChHHHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhc
Q 004324 381 -------------------------------------------GEFMKSLEIFREMQE-R-LGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 381 -------------------------------------------g~~~~A~~~~~~m~~-~-g~~p~~~t~~~li~~~~~~ 415 (761)
|+.++|..+|+.... . ...++...-+-++..|.+.
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 333333333333322 0 0111222333445555554
Q ss_pred CC---HHHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004324 416 EE---TELTESL----------------------MKEFVE-TGM-KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (761)
Q Consensus 416 g~---~~~A~~l----------------------~~~m~~-~g~-~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (761)
+. ..+|..+ ...... .+. .+ +...|..+..++.. ++.++|...+.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 44 2222222 111111 111 22 45566666666655 6777777766666542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh-HHH
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES-AWM 545 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~ 545 (761)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|..++++.++.. |+. ...
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~ 579 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY 579 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence 244333333344445677777777777776543 3455556666667777777777777777776532 211 111
Q ss_pred HHHHHHH-hhhh-----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHh
Q 004324 546 EKLDYVL-SLNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 546 ~~~~~~~-~l~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~ 617 (761)
..+.... ..++ ..+.. .....| +...|..+...+.+.|+.++|+..++ +.++|++...+..++.++..
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~--AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTR--SLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH--HHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1111100 0011 00001 111122 24456666666777777777777766 66677777677777777777
Q ss_pred hhhccCCCC
Q 004324 618 YHEWLHPSF 626 (761)
Q Consensus 618 ~g~~~~a~~ 626 (761)
.|++++|..
T Consensus 656 ~G~~eeAi~ 664 (987)
T PRK09782 656 SGDIAQSRE 664 (987)
T ss_pred CCCHHHHHH
Confidence 666666654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=2.8e-11 Score=138.48 Aligned_cols=397 Identities=10% Similarity=0.007 Sum_probs=207.0
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL---IVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l---i~~~~~~ 228 (761)
...+.|+++.|+..|+...+.. +.+. .++ .++..+...|+.++|+.++++... |+...+..+ ...|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~-- 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYR-- 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHH--
Confidence 4446666666666666666543 2221 222 555555566666666666666552 222222222 22333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhh
Q 004324 229 PVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (761)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (761)
..|++++|+++|+++.+. .|+. ..+..+...+... |+.++|+..+..+.... |+...+ +..++.+
T Consensus 114 -~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~------~q~~eAl~~l~~l~~~d--p~~~~~--l~layL~ 179 (822)
T PRK14574 114 -NEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADA------GRGGVVLKQATELAERD--PTVQNY--MTLSYLN 179 (822)
T ss_pred -HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHhcccC--cchHHH--HHHHHHH
Confidence 346666666666666553 2322 2222333333332 35666666666655443 222222 2223444
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------------------------------
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW-------------------------------- 355 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~-------------------------------- 355 (761)
...++..+|++.++++.... .-+...+..++.+..+.|-...|.++.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 34444444666666665542 113344444445555444444444333
Q ss_pred ----------------HHHHhC-CCCCCH-HHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 356 ----------------LRLLES-DNGIPT-PAF----VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 356 ----------------~~m~~~-g~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
+.+... +..|.. ..| --.+-++.+.|+..++++.|+.|...|.+....+--++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 222221 111211 111 1234556666777777777777776665434445566677777
Q ss_pred hcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCH-HH
Q 004324 414 KAEETELTESLMKEFVETG-----MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--------------PNR-TI 473 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------p~~-~~ 473 (761)
..+++++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+..+ ||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 7777777777777765532 122333345666777777777777777777665211 111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~ 553 (761)
+..++..+...|++.+|++.++++.... |-|......+...+...|.+.+|++.++.... . +|+
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l--~P~---------- 482 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVES--L--APR---------- 482 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h--CCc----------
Confidence 3344555666777777777777776653 44666666777777777777777777755442 1 222
Q ss_pred hhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 554 LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
+..+...........+++..|+.+.+ .+..|++...
T Consensus 483 ------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 483 ------------------SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred ------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 12333344445555677777777776 6667776643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=1.3e-10 Score=133.02 Aligned_cols=365 Identities=9% Similarity=0.031 Sum_probs=244.7
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+...|+++.|.++++.+.+.. +.+..++..++..|...++.++|++.++++... .|+...+-.+ ++... ..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~-~~~ 183 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNR-ATD 183 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHH-hcc
Confidence 4445577777777777777764 445566666667777777777777777776654 3444444222 33311 235
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHh
Q 004324 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ-----KDIYSGLIWLHS 306 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~ 306 (761)
+..+|++.++++.+. .|+ ...+..++.++.+. |-...|.++..+-...-...+ .+.....+....
T Consensus 184 ~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 184 RNYDALQASSEAVRL---APTSEEVLKNHLEILQRN------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 555577777777764 353 33334444444443 244455544433211000000 001111111000
Q ss_pred -h--ccCCC---HHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004324 307 -Y--QDNID---KERISLLKKEMQQA-GFEEGK-----EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (761)
Q Consensus 307 -~--~~~g~---~~~a~~l~~~m~~~-g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 374 (761)
. ....+ .+.|+.-++.+... +-.|.. ....-.+-++...|++.++.+.++.|...+......+--++.
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0 01111 34555556665542 222422 222355678889999999999999999998765667888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCC
Q 004324 375 EAYAKIGEFMKSLEIFREMQERL-----GSASVPAYHKIIELLCKAEETELTESLMKEFVETG-------------MKPL 436 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd 436 (761)
++|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++.+.+.- ..||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999986542 23355556889999999999999999999999831 1123
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 437 M-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 437 ~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
- ..+..++..+.-.|++.+|++.++++....+-|......+.+.+...|++.+|+++++...... +-+..+......
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHH
Confidence 2 3345567778899999999999999998888999999999999999999999999997776653 335677788888
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (761)
++...|++.+|..+.+...+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999985
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.7e-09 Score=118.77 Aligned_cols=496 Identities=13% Similarity=0.075 Sum_probs=300.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCCCCCHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ--GRVPSEMTFHILIVAYLSAPVQGCLDEA 237 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--g~~pd~~~~~~li~~~~~~~~~g~~~~A 237 (761)
.+.|.+.|..+.+.. ++|+...-.-.......|++..|+.+|...... ...||+..- +-.++. +.|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~---kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFW---KLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHH---hccchhhH
Confidence 588888899888885 667665555555556778999999999985543 455665321 113444 78999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHH
Q 004324 238 CSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS 317 (761)
Q Consensus 238 ~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~ 317 (761)
+..|....+ +.|+.+.-...|.-+...... ...+..|..++...-..+.. ++++.+.|. .-+.-.|++..+.
T Consensus 219 ~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~-nP~~l~~LA--n~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 219 LLAFERALQ---LDPTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNE-NPVALNHLA--NHFYFKKDYERVW 290 (1018)
T ss_pred HHHHHHHHh---cChhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCC-CcHHHHHHH--HHHhhcccHHHHH
Confidence 999999887 457544433333322221110 02566777777766444322 345555554 5566678899999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 318 LLKKEMQQAGFEE--GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 318 ~l~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
.+...+...-..- -...|--+.++|-..|++++|.+.|.+..+....--+..+--|..+|.+.|+++.|...|+...+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 8888877653111 12346678888999999999999988777765332234445578999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----h-C
Q 004324 396 RLGSASVPAYHKIIELLCKAE----ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL----E-K 466 (761)
Q Consensus 396 ~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~----~-~ 466 (761)
. .+-+..|.-.|-..|+..+ ..+.|..++.+..+.- .-|...|..+..+|....-+.. +.++.... . +
T Consensus 371 ~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 371 Q-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG 447 (1018)
T ss_pred h-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC
Confidence 5 2334556666666666654 4567777777666643 4467778777777766544433 55555543 2 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ--TIG------VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~~------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
-.+.+...|.+...+...|.+++|...|......- ... ++..+--.+...+-..++.+.|.+.|..+..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--- 524 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--- 524 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---
Confidence 45778889999999999999999999998876651 011 2322333445556677889999999999985
Q ss_pred ccChHHHHHHHHHHhhhhhhhc-------ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccchhh
Q 004324 539 EIESAWMEKLDYVLSLNRKEVK-------KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMH 607 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~~~~ 607 (761)
-.|..+..+....++.+.-.. ....+.... .|..+|+-+...+.....+..|..-+. ....-.++-.
T Consensus 525 -ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 525 -EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred -HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 345544544443333321000 001111111 123333323223334444444544333 1111133344
Q ss_pred HHHHHHHHHhh-hhccC---CCCccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHH
Q 004324 608 SVLRRYLYDQY-HEWLH---PSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTL 683 (761)
Q Consensus 608 ~~~l~~~~~~~-g~~~~---a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m 683 (761)
.+.|+|+|.+. +++.. .......+|++++.+.+...+. +.++..+=.++.+..|.+.+|..+|.+.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk----------N~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK----------NMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc----------hhhhccchhhhhhhccCchHHHHHHHHH
Confidence 55678866543 22211 1224555666666666544221 2333333344566689999999999999
Q ss_pred hhcCC
Q 004324 684 KARSL 688 (761)
Q Consensus 684 ~~~gl 688 (761)
+..+-
T Consensus 673 rEa~~ 677 (1018)
T KOG2002|consen 673 REATS 677 (1018)
T ss_pred HHHHh
Confidence 76543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.2e-09 Score=117.78 Aligned_cols=500 Identities=10% Similarity=0.039 Sum_probs=330.7
Q ss_pred CCcchhhhhH-HHh--ccCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004324 143 RQEDGTYLAV-HCM--RIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218 (761)
Q Consensus 143 ~p~~~t~~~~-~~~--~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~ 218 (761)
.|+.+-+.+- +|. ..+++..|+.+|....... ...+|+.+. +-.++.++|+.+.|+..|.+..+. |+..-
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqL----dp~~v 233 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQL----DPTCV 233 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhc----ChhhH
Confidence 4666655554 443 6789999999999966543 256666553 346778999999999999999886 33333
Q ss_pred HHHHHH--HhcC-CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH
Q 004324 219 HILIVA--YLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (761)
Q Consensus 219 ~~li~~--~~~~-~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (761)
++++.- +..+ .....+..++.++...-...+-.|+ ..+.|-+-+... |++..+..+...+......-..
T Consensus 234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~--~l~~LAn~fyfK------~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPV--ALNHLANHFYFK------KDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcH--HHHHHHHHHhhc------ccHHHHHHHHHHHHHhhhhhHH
Confidence 333332 1110 1234567777777777654444444 444555555554 5999999999988765533223
Q ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004324 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (761)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 373 (761)
-.-+.+-++.++...|++++|...|.+-.+. .||.++ +--|...|.+.|+++.+...|+.+.+..+. +..+...|
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iL 382 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 3333445568999999999999999776654 555544 447888999999999999999999987643 55667777
Q ss_pred HHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 004324 374 MEAYAKIG----EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV----ETGMKPLMPSYINLTN 445 (761)
Q Consensus 374 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~t~~~li~ 445 (761)
...|+..+ ..+.|..++.+..+.- +.|...|-.+-..+-.. ++..++..|.... ..+-.+.....|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 77777765 5577777777766652 44677787666666554 4444466665544 4566678899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-HHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEK----CRPNR------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC-NIIL 514 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~----~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~-~~li 514 (761)
.+...|+++.|...|...... ..+|. .+--.+...+-..++.+.|.+.+..+.... |+-+.. .-+.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhh
Confidence 999999999999999998753 22333 233334556666789999999999999874 665433 3333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhh--hccc---ccCCCchhhHHhHHHHHhhhhh-----
Q 004324 515 SAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKE--VKKP---VSLNLSSEQRENLIGLLLGGLC----- 584 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~~~~~~~~~~~~~ll~~~~----- 584 (761)
......+...+|...++.... .-.-+|+....++.......+. .+.. ...+....+|..+.-+|.+-|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 233345778899999999985 5667777766665322211110 0000 0001111134555556665442
Q ss_pred -------hhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeee
Q 004324 585 -------IESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMY 655 (761)
Q Consensus 585 -------~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li 655 (761)
..+..+.|.+++. +..+|.+..+-+-++.+++..|+|.+|.. +|.+..+.+- -+.-+|.-+-
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~d--------IFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARD--------IFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHH--------HHHHHHHHHh-hCCceeeeHH
Confidence 2245677888877 88899998888889999999988887776 5777776644 2233344444
Q ss_pred CCcccCCCcEEEEeccCHHHHHHHHHHH
Q 004324 656 GGHRTSVGDILLKLKVSSEGIALVFKTL 683 (761)
Q Consensus 656 ~g~~~~~~~~~~~~~g~~~e~~~l~~~m 683 (761)
++|.. .|.+-.|.++++.-
T Consensus 688 h~~~e---------~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 688 HCYVE---------QGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHH---------HHHHHHHHHHHHHH
Confidence 55555 67777777777665
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=7.3e-10 Score=119.14 Aligned_cols=285 Identities=9% Similarity=0.021 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~-~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
.|++++|.+.+....+. .++...+ .++.+.. ... |+.+.|...+.++.+.. |+......+.....+..
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~-~llaA~aA~~~-----g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVN-YLLAAEAAQQR-----GDEARANQHLERAAELA--DNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHHHC-----CCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 58888888777776543 1222222 3333322 333 48888999888887644 44444443333466778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 382 (761)
.|+.+.|...++++.+... -+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++....+..+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999887652 25677888999999999999999999999988765322 233444444445555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66667777766543 3457778889999999999999999999999884 455421 233444456899999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+..+-|...+.++...+.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98877888889999999999999999999999999985 59999999999999999999999999997753
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=1.2e-07 Score=99.86 Aligned_cols=442 Identities=12% Similarity=0.059 Sum_probs=325.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD----IINQGRVPSEMTFHILIVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----m~~~g~~pd~~~~~~li~~~~~~ 228 (761)
++++..-++.|..++....+. ++.+..+|.+-...=-.+|.++...++.++ +...|+..+...|-.=..+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e-- 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE-- 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh--
Confidence 556667777788888777766 677777777766666777777777777664 344567777777766666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 004324 229 PVQGCLDEACSIYNRMIQLGGYQPR--PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (761)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (761)
+.|.+--+..+....+.- |+.-. ..||+..-..|.+. +.++-|..+|...++.... +..++.... ..
T Consensus 491 -~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~------~~~~carAVya~alqvfp~-k~slWlra~--~~ 559 (913)
T KOG0495|consen 491 -DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKR------PAIECARAVYAHALQVFPC-KKSLWLRAA--MF 559 (913)
T ss_pred -hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhc------chHHHHHHHHHHHHhhccc-hhHHHHHHH--HH
Confidence 567777777777777655 44332 24566666666654 3788888888877765432 233333333 55
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
--..|..+....+|++.... +.-....|-....-+-..|++..|+.++....+..+. +...|-+-+..-..+..++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 56677889999999998875 3334566667777788899999999999999988765 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
..+|.+.... .|+...|..-+..---.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999988764 567777776666666788999999999998884 344 45777888889999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
.|+-.+..|-.|.+.=-+.|.+-.|..+|++..-++ +-|...|...|..=.+.|+.+.|..+..+.++. + |+..
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c-p~sg-- 787 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C-PSSG-- 787 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-Cccc--
Confidence 888888999999999999999999999999998886 568899999999999999999999999888863 2 2222
Q ss_pred HHHHHHHhhhh----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 546 EKLDYVLSLNR----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 546 ~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
..+.+++-+.. +.....-.-+ .+.|..+.-++...+....+++.|+.-+. ..++|++..++..+-..+.+.|
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 12233222211 0000000001 11234555556666777888999998887 8889999989888888888888
Q ss_pred hccC
Q 004324 620 EWLH 623 (761)
Q Consensus 620 ~~~~ 623 (761)
.-++
T Consensus 866 ~eed 869 (913)
T KOG0495|consen 866 TEED 869 (913)
T ss_pred CHHH
Confidence 5443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=5e-09 Score=105.10 Aligned_cols=416 Identities=12% Similarity=0.106 Sum_probs=222.0
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFAL----ATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAP 229 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-~~~~li~~~~~~~ 229 (761)
.+.+.+..|.++++-...+- ...+..+ .+.+--.+.+.|.+++|..-|+...+. .||.. .||..|.+||
T Consensus 248 ~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~--- 321 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA--- 321 (840)
T ss_pred eehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee---
Confidence 35667788888887777653 2222222 222223355789999999999998775 57765 4888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHH-----HHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 230 VQGCLDEACSIYNRMIQLGG-----------YQPRPSLHNSLFRA-----LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g-----------~~p~~~t~~~ll~~-----~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
-|+-++..+.|.+|..-.| -.|+....|-.|+. .-+.. +.+.+++.-.--.++.--+.|
T Consensus 322 -i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~----ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 322 -IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN----KADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred -cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh----hhhHHHHHHHHHHHhcccccc
Confidence 7999999999999986522 12333333333322 11110 012222222222222222222
Q ss_pred CHHH-HHHHH------------------HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChHHHH
Q 004324 294 QKDI-YSGLI------------------WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLS--VLRVCAKEGDVEDAE 352 (761)
Q Consensus 294 ~~~~-~~~li------------------~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~ 352 (761)
+-.. +.|-+ ...-+.++|+++.|.++++.+.+..-+.-...-+. ++...---.++..|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2100 11111 12335677888888888877766532222222222 222222233445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
+.-+.....+- -+....+.--..-..+|++++|.+.+++.....-.-....||.= -.+-..|++++|++.|-++..-
T Consensus 477 qyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i- 553 (840)
T KOG2003|consen 477 QYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI- 553 (840)
T ss_pred HHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-
Confidence 54444332210 01111111111222346677777777766654111111122211 1244556677777666555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+..+.....-+.+.|....+..+|.+++.+...-++.|+...+-|.+.|-+.|+-.+|.+..-+--+- ++-|..|..-
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHH
Confidence 12345555566666666666677777666665556666666777777777777777766665554433 4556666666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhh-hhhhhhhH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL-CIESDEKR 591 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~ 591 (761)
|..-|....-+++|+.+|++..- +. |+.+-|..++..| ++.|++.+
T Consensus 632 l~ayyidtqf~ekai~y~ekaal----iq-----------------------------p~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAAL----IQ-----------------------------PNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh----cC-----------------------------ccHHHHHHHHHHHHHhcccHHH
Confidence 66666666666777777766541 11 2255576666555 45677777
Q ss_pred HHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 592 KRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 592 a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
|...++ ...-|.+....-.|+.++...|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 777776 3334555555555555554444
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=4.6e-09 Score=113.62 Aligned_cols=288 Identities=9% Similarity=0.021 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
..|+++.|.+.+.+..+. .|+...+-.+..-.+... |+.+.|...+.+..+....+. ....+.....+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p~~~--l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAGNDN--ILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHH
Confidence 379999999999887653 466544444433333333 599999999999876553332 2222222356677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKMEAY---AKIGEFMK 385 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~ 385 (761)
.|+++.|...++.+.+.... +..++..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999987522 5678889999999999999999999999998754 333332 111222 33333344
Q ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--HhcCCHHHHHHH
Q 004324 386 SLEIFREMQERL---GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY-INLTNMY--LNLGMHDRLHLA 459 (761)
Q Consensus 386 A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~~--~~~g~~~~a~~~ 459 (761)
+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 444555555432 11377888899999999999999999999999864 333211 1133333 345778888888
Q ss_pred HHHHHhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 460 FSECLEKCRPNR--TIYGIYLESLKNAGNIEKAEEIFNH--MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 460 ~~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~--m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
++...+..+-|. ....++...|.+.|++++|.+.|+. ..+ ..|+...+..+...+.+.|+.++|.+++++-.
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877555555 7778999999999999999999995 544 45899999999999999999999999999865
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=9e-10 Score=119.25 Aligned_cols=500 Identities=13% Similarity=0.062 Sum_probs=283.1
Q ss_pred hhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004324 138 QKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE 215 (761)
Q Consensus 138 ~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~ 215 (761)
+..|+.|+.+||..+ .++..|+.+.|- +|..|.-.. .+.+..+++.++......++.+.|. .|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 445899999999887 777899999888 999999887 8889999999999999999888876 5788
Q ss_pred HHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhc---CCCCCCHHHHHHHHHHHHcCCCC--------CchhhHHHHHH
Q 004324 216 MTFHILIVAYLSAPVQGCLDE---ACSIYNRMIQL---GGYQPRPSLHNSLFRALVSKPGG--------LSKYYLQQAEF 281 (761)
Q Consensus 216 ~~~~~li~~~~~~~~~g~~~~---A~~l~~~m~~~---~g~~p~~~t~~~ll~~~~~~~g~--------~~~g~~~~A~~ 281 (761)
.||+.|+.+|. +.|++.. +.+.+...... .|+.--..-|-..|++|-+.... +-+|.++.+.+
T Consensus 84 Dtyt~Ll~ayr---~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYR---IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHH---hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 7888655 22222222211 12222222222222222111000 00135555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004324 282 IFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES 361 (761)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 361 (761)
+...+......-.... ++ -..-..+-.+++...+-+...+ .|+..+|.+++.+-...|+++.|..++.+|.+.
T Consensus 161 ll~~~Pvsa~~~p~~v---fL-rqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQV---FL-RQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHhhCCcccccchHHH---HH-HHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5544422211111111 11 0111122223333333222222 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 362 DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (761)
Q Consensus 362 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 441 (761)
|+..+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+.--+-.+..+|....+. .| .+....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~-sq~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG-SQLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc-cchhhhhh
Confidence 998887766666666 8889999999999999999999999988888887776633332 22 22222222
Q ss_pred HHHHHHHhcC-----CHHH--HHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-CHH
Q 004324 442 NLTNMYLNLG-----MHDR--LHLAFSECLE----KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGV-NTR 508 (761)
Q Consensus 442 ~li~~~~~~g-----~~~~--a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~p-~~~ 508 (761)
+-+..-+-.| .++. +.-+.....+ |+.....+|...+. ....|+-++..++-..|..-- .+.+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1111111111 33333344444333 333677777777776664311 0122 344
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH--HHHHc--CC-------------ccChHH---------------------HHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYD--LMCLK--KY-------------EIESAW---------------------MEKLDY 550 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~--~m~~~--g~-------------~~~~~~---------------------~~~~~~ 550 (761)
.|..++.-|.+.-+......++. +.++. +. .|+... -+++..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 55555554443222111111111 11100 00 111111 000000
Q ss_pred -----HHhhhhhh--hc-ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhcccc-----chhhHHHHHHHHHh
Q 004324 551 -----VLSLNRKE--VK-KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNEN-----SRMHSVLRRYLYDQ 617 (761)
Q Consensus 551 -----~~~l~~~~--~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~-----~~~~~~~l~~~~~~ 617 (761)
.+.+.++. .+ .....+....--...|..|+.-|+.+..++.|.....--..|+ +...+.-+.+++.+
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 00000000 00 0000000000013557888888888888888887766111121 12245667788888
Q ss_pred hhhccCCCCccccCCcccchhhhhhccCcc--ceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHHhhcCCce
Q 004324 618 YHEWLHPSFKFWPKGRLVIPKLIHRWLTPR--ALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDC 690 (761)
Q Consensus 618 ~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd--~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m~~~gl~~ 690 (761)
.+...++.. ++.+|.+.-...+ .++.|-|+++... .|..+.+.++.+.+...|+.-
T Consensus 541 ~~~l~dl~t--------iL~e~ks~a~n~~~~a~~~f~~lns~a~---------agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLST--------ILYEDKSSAENEPLVAIILFPLLNSGAP---------AGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHH--------HHhhhhHHhhCCchHHHHHHHHHhhhhh---------ccCHHHHHHHHHHHHHhhhhh
Confidence 777666654 4666655433334 6677888898888 899999999999999888874
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=1.8e-08 Score=110.06 Aligned_cols=323 Identities=16% Similarity=0.162 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCch
Q 004324 194 RKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSK 273 (761)
Q Consensus 194 g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~ 273 (761)
|++++|.+++.+.++.... +...|-+|-..|- +.|+.++++..+-..-. ..|...-+-..+.-++...
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyE---qrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~----- 220 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYE---QRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQL----- 220 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhc-----
Confidence 6666666666666655322 4455666666665 45666666555444332 3444444444444444433
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVE 349 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 349 (761)
|.+++|.-.|.+.++....-+...+... ..|.+.|+...|+..|.++...-...| ....-.+++.+...++-+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers---~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERS---SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHH---HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3566666666666665544333333322 345566666777777766665422111 112234455566666667
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------------CCCCC
Q 004324 350 DAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER---------------------------LGSAS 401 (761)
Q Consensus 350 ~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~ 401 (761)
.|.+.++.....+ -..+...++.++..|.+...++.|......+..+ ++.++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 7777776665532 2234556777788888888888888777777652 22233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYL 478 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li 478 (761)
...+ -+.-++......+....+.....+..+ .-+...|.-+.++|...|++.+|..+|..+.. -..-+...|--+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3331 223344455555555566666666653 33567899999999999999999999999986 3445688999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+|...|.+++|.+.|+...... +-+...-.+|-..+-+.|+.++|.+.+..|.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999998863 3344566667777889999999999999876
No 35
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.8e-12 Score=92.48 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555554
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=8.2e-12 Score=128.14 Aligned_cols=252 Identities=12% Similarity=0.110 Sum_probs=99.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
.+-..+.+.|++++|.+++....... ..-+...|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556667788888888775443333 2234455555666666677788888888877765432 34455556655 677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.. ..+.+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887777665543 4555666777777788888888888888665 3456777888888888888888888888
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
+++..+.. |-|....+.++..+...|+.+++.++++...+.. |. |.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~----------------------------~~ 214 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----PD----------------------------DP 214 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HT----------------------------SC
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----cC----------------------------HH
Confidence 88888864 3346778888888888888888888888777532 11 24
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..|..+..++...|+.+.|...++ ....|+++.....+++++...|+.++|..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456677777888888888888888 77788888888888888888888888876
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=2.6e-08 Score=108.91 Aligned_cols=365 Identities=14% Similarity=0.049 Sum_probs=267.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..|++++|..++.+++++. +.+...|-+|...|-..|+..++...+-..-... +-|..-|-.+-.-.. +.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~---~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE---QLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH---hcccHH
Confidence 3499999999999999996 7788999999999999999999988764443322 226677888777777 799999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH--HHHhhccCCCH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI--WLHSYQDNIDK 313 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~g~~ 313 (761)
+|.-.|.+.++. .|+..-|--==..++... |+...|..-|.++.......|-.-+-.++ .++.+...++.
T Consensus 225 qA~~cy~rAI~~---~p~n~~~~~ers~L~~~~-----G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 225 QARYCYSRAIQA---NPSNWELIYERSSLYQKT-----GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHHHHHhc---CCcchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999985 465544333223344444 59999999999998877643333333333 23556667777
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------------CC
Q 004324 314 ERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN---------------------------GI 365 (761)
Q Consensus 314 ~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~~ 365 (761)
+.|.+.++.....+ -..+...++.++..+.+...++.|......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 88888888776632 234566788889999999999999888877776221 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
+..+ .-++-++......+....+.....+.. +.-+...|.-+..+|.+.|++.+|+.+|..+......-+...|--+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 112233333333344444444444444 3334566888999999999999999999999987666678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSA 516 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~~p~~~t~~~li~~ 516 (761)
..+|...|..++|.+.|...+.-.+-+...--+|-..|-+.|+.++|.+.++.|..-+ ...|+...--.....
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 9999999999999999999997666777788888889999999999999999965322 155666666667778
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|+.++=+.....|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8889998886666666654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=3.6e-09 Score=113.79 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL--SVLRVCAKEGDVEDA 351 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a 351 (761)
|+++.|++......+..-. ...+.++......+.|+.+.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 98 Gd~~~A~k~l~~~~~~~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5999999888776554322 2333455556668999999999999999764 55554333 346788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-------PAYHKIIELLCKAEETELTESL 424 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~l 424 (761)
.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999998865 6788889999999999999999999999988665332 1333444444444555666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
++.+.+. .+.+......+...+...|+.++|.+++.+..+ ..|+... .++.+....++.+++.+..+...++. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--C
Confidence 6665432 345788899999999999999999999999886 3555522 23444456699999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhh
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC 584 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 584 (761)
-|...+.++...|.+.|++++|.+.|+.+.+. .|+ ...+..|...+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~-------------------------------~~~~~~La~~~~ 372 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD-------------------------------AYDYAWLADALD 372 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-------------------------------HHHHHHHHHHHH
Confidence 56677889999999999999999999999853 233 344556777788
Q ss_pred hhhhhhHHHHHHH
Q 004324 585 IESDEKRKRHMIR 597 (761)
Q Consensus 585 ~~g~~~~a~~~~~ 597 (761)
..|+.++|.+.++
T Consensus 373 ~~g~~~~A~~~~~ 385 (398)
T PRK10747 373 RLHKPEEAAAMRR 385 (398)
T ss_pred HcCCHHHHHHHHH
Confidence 8999999988887
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=1.1e-11 Score=127.26 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|++++|++++.+-... ...|+...|..++..++... |+.+.|...++++...+.. +...+..++. +..
T Consensus 20 ~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~-----~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~---l~~ 89 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSL-----GDYDEAIEAYEKLLASDKA-NPQDYERLIQ---LLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-cccccccccccccccccccc-----ccccccccccccccccccc-cccccccccc---ccc
Confidence 567777777777544332 11455555555555555443 3666666666666554432 2222222221 134
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
.+++++|..++.+..+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555554443321 334444555555555555555555555544322 22344455555555555555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|++..+. .| |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++..+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55555543 23 24444555555555555555555555544432 2222334444444444444444444444444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNH 496 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 496 (761)
+.|..+...+.+++.+.|+.++|.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 33444444444444444444444444443
No 40
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.5e-12 Score=91.42 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-08 Score=103.38 Aligned_cols=286 Identities=9% Similarity=0.045 Sum_probs=200.8
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 004324 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYA 378 (761)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~ 378 (761)
.....++....+.+++..-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+..+- -|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 3334555555567777777777777777666555555556666778888888888888887532 25667776543322
Q ss_pred HcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 379 KIGEFM-KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (761)
Q Consensus 379 ~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~ 457 (761)
.+.++. -|..++. -...+ ..|...+.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.
T Consensus 311 ~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221111 1222221 11122 3566667777778888888888888888754 223567777788888888888888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
.-++..++-++.|-..|-.|..+|.-.+...-|+-.|++...- -+-|...|.+|...|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8888888877888888888999998888888888888888875 25577888888899988999999999888887533
Q ss_pred CccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hh-------ccccchhhH
Q 004324 538 YEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQ-------FNENSRMHS 608 (761)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~-------l~p~~~~~~ 608 (761)
- .+...+..|...+...++.++|.+.++ ++ .+|+..-+-
T Consensus 463 d--------------------------------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 463 D--------------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred c--------------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 1 124567777778888888888887776 22 345455556
Q ss_pred HHHHHHHHhhhhccCCCC
Q 004324 609 VLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 609 ~~l~~~~~~~g~~~~a~~ 626 (761)
..|+.-+.+.++|++|..
T Consensus 511 ~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHhhcchHHHHH
Confidence 678888888888887764
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-07 Score=96.16 Aligned_cols=366 Identities=11% Similarity=0.073 Sum_probs=251.4
Q ss_pred ccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004324 141 WLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218 (761)
Q Consensus 141 ~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~ 218 (761)
+..-|.+-+-+. .....|..+.|...|...+.. .|..=..|..|.... -+.+.+..+-...+. |..-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l~~~l~~-----~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSILVVGLPS-----DMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHHHhcCcc-----cchHH
Confidence 344454443333 556777788888888777765 354545555444433 233333322222211 11111
Q ss_pred H--HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cC
Q 004324 219 H--ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQ 294 (761)
Q Consensus 219 ~--~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~ 294 (761)
. -+..++- +....+++++=....... |+ |+..-+.+.+.++.-.. .++++|+.+|+++.+.++- -|
T Consensus 229 ~~~F~~~a~~---el~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~d 298 (559)
T KOG1155|consen 229 KKFFLKKAYQ---ELHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDD 298 (559)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchh
Confidence 1 1223343 455777888777777765 44 44444444444444333 2899999999999887532 25
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004324 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (761)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 374 (761)
.++|+..+ +..... ..+.++.+-...=-+--..|+..+.+-|+-.++.++|...|+...+.++. ...+|+.|.
T Consensus 299 mdlySN~L--Yv~~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmG 371 (559)
T KOG1155|consen 299 MDLYSNVL--YVKNDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMG 371 (559)
T ss_pred HHHHhHHH--HHHhhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhh
Confidence 67887766 222221 11222222211111223567888889999999999999999999998865 567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 454 (761)
.-|....+...|.+-++...+- .+.|-..|-.|-++|.-.+.+.-|+-.|++..+-. +-|...|.+|..+|.+.++++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLE 449 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHH
Confidence 9999999999999999998876 35588899999999999999999999999988843 447899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~ 529 (761)
+|.+.|.........+...+..|.+.|-+.++.++|.+.|++-++ .|.+.|.. ....-|..-+.+.+++++|..+
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 999999999874455778999999999999999999999887655 34333422 2333355667789999999988
Q ss_pred HHHHHH
Q 004324 530 YDLMCL 535 (761)
Q Consensus 530 ~~~m~~ 535 (761)
......
T Consensus 530 a~~~~~ 535 (559)
T KOG1155|consen 530 ATLVLK 535 (559)
T ss_pred HHHHhc
Confidence 887763
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.26 E-value=4.8e-07 Score=95.46 Aligned_cols=331 Identities=14% Similarity=0.082 Sum_probs=219.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHH
Q 004324 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ---LGGYQPRPSLHNSLFRALV 265 (761)
Q Consensus 189 ~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~---~~g~~p~~~t~~~ll~~~~ 265 (761)
+|++..-++.|.++++...+. +.-+...|.+.-.-=- ++|+.+...++..+-.. ..|+..+..-|-.=-.+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE---~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEE---ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344555566666666665543 3335555554443333 46666666666554321 1255555555544444444
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKE 345 (761)
Q Consensus 266 ~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 345 (761)
.. |.+--+..+....+..|+.-...--+|+-....+.+.+.++-|..+|....+. +.-+...|......=-..
T Consensus 491 ~a------gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 491 DA------GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred hc------CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 33 35555566666666666655555555555556666777777777777666553 233456666666666667
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
|..+.-..+|++....-++ ....|-....-+-+.|++..|..++.+..+.. +-+...|-+-+..-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777777777777776543 34566666777777888888888888887763 225667888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
.+... ..|+...|.--+..---.+..++|.+++++.++.++.-...|-.+...+-+.++++.|.+.|..=.+. ++-
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~ 717 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPN 717 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCC
Confidence 87766 45666777666666666788888888888888766666778888888888888888888888776665 444
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..-.|..|...=-+.|.+-.|..++++.+-+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 5567777777777888888888888887754
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=7.2e-10 Score=117.25 Aligned_cols=273 Identities=10% Similarity=-0.035 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChH-HHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFM-KSLE 388 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~-~A~~ 388 (761)
...+|..+|...... +.-...+..-+..+|...+++++|+++|+.+.+..+- -+...|.+.+-.+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367888999885443 3334577788899999999999999999999886421 26678888776554321111 1222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
+.+.++ -...||-++-+.|.-+++.+.|++.|++.++. .| ..++|+.+.+=+.....+|.|...|+..+.-.
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 333322 24689999999999999999999999999884 45 67889888888888899999999999987433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEK 547 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 547 (761)
+.+-..|--|...|.+.++++.|+-.|++..+-+ +-|.+....+...+-+.|+.++|+.++++... .+|.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----ld~kn--- 556 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH----LDPKN--- 556 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh----cCCCC---
Confidence 3334444556788999999999999999999875 44677777788888999999999999999985 23220
Q ss_pred HHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 548 LDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
+..----...+...++.++|...++ .++.|++...+.+++.+|.+.|+.+.|.
T Consensus 557 -------------------------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 557 -------------------------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -------------------------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 1111111122334577888888888 7889999999999999999999988887
Q ss_pred C
Q 004324 626 F 626 (761)
Q Consensus 626 ~ 626 (761)
.
T Consensus 612 ~ 612 (638)
T KOG1126|consen 612 L 612 (638)
T ss_pred H
Confidence 6
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=1.2e-08 Score=110.24 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=204.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|+++.|++.+....+.. |++ ..+.++........|+.+.|...+.+..+..-.+...+-......+...|+++.|.+
T Consensus 98 g~~~~A~~~l~~~~~~~--~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA--AEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCHHHHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999998887665 332 344455567788899999999999998765322223344445788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL---CKAEETELTESLMKEFVE 430 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A~~l~~~m~~ 430 (761)
.++.+.+..+. +..++..+...|.+.|++++|.+++..+.+.++.+....-..-..++ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999865 66788899999999999999999999999987643332211111222 333333444445555555
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 431 TGM---KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 431 ~g~---~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
..- +.+...+..+...+...|+.++|.+++++..+..+.+... .....-.....++.+.+.+.+++..+.. +-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CC
Confidence 321 2378889999999999999999999999998744444321 1222223334578899999999888763 22
Q ss_pred CH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhh
Q 004324 506 NT--RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL 583 (761)
Q Consensus 506 ~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 583 (761)
|. ....++...|.+.|++++|.+.|+........|++. .+..|...+
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-------------------------------~~~~La~ll 380 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-------------------------------DLAMAADAF 380 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-------------------------------HHHHHHHHH
Confidence 34 566688999999999999999999533223334443 344666667
Q ss_pred hhhhhhhHHHHHHH
Q 004324 584 CIESDEKRKRHMIR 597 (761)
Q Consensus 584 ~~~g~~~~a~~~~~ 597 (761)
.+.|+.++|.++++
T Consensus 381 ~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 381 DQAGDKAEAAAMRQ 394 (409)
T ss_pred HHcCCHHHHHHHHH
Confidence 78888888888877
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=6.7e-08 Score=97.16 Aligned_cols=406 Identities=13% Similarity=0.100 Sum_probs=267.0
Q ss_pred CCccchhhHHHHHHhhhcccCCcchhhhhH----HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 004324 123 LPSHKGGTLVRILNAQKKWLRQEDGTYLAV----HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAK 198 (761)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 198 (761)
..+..+..|++|-..+...+..+...-..- ...+.|.++.|..-|+...+. .||..+.-.|+-++..-|+-++
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHH
Confidence 334567778887776665565554432221 566899999999999999886 4576665556666667899999
Q ss_pred HHHHHHHHHHCCCC------------CCHHHHHHHHH-----HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH---HH
Q 004324 199 CRDIFDDIINQGRV------------PSEMTFHILIV-----AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL---HN 258 (761)
Q Consensus 199 A~~~f~~m~~~g~~------------pd~~~~~~li~-----~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t---~~ 258 (761)
..+.|..|..--.. |+....|-.|. ..-+. +..+.++|+-.-.++..- -+.|+-.. |.
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~-~ka~aek~i~ta~kiiap-vi~~~fa~g~dwc 405 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE-NKADAEKAIITAAKIIAP-VIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhcc-ccccchhcccHHH
Confidence 99999999864322 33333333322 22210 111223333333333321 23344210 00
Q ss_pred -HHHHHHHc----------CCC-CCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc
Q 004324 259 -SLFRALVS----------KPG-GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA 326 (761)
Q Consensus 259 -~ll~~~~~----------~~g-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~ 326 (761)
-.+.+-.. ..| -+.+|+++.|.+++.-+.+.+...-...-+.+..++......++..|...-+.....
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 00110000 000 123479999999999988777655444455555555555566677776665544322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406 (761)
Q Consensus 327 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (761)
. .-|......--+.....|++++|.+.+++....+-.-....|| +--.+-+.|++++|++.|-++..- +.-++...-
T Consensus 486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1 1122222222223345799999999999998875432333444 334567789999999999887532 122666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
-+.+.|-...+..+|.+++-+.... ++.|......|.+.|-+.|+-.+|.+.+-+--+-++-|..+..-|..-|....-
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 7888899999999999998655432 445788899999999999999999998877666678888998889999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCccC
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL-SSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+++|..+|++..- +.|+.+-|-.||..|. +.|++.+|.++++...+ .+.-+
T Consensus 642 ~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfped 693 (840)
T KOG2003|consen 642 SEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPED 693 (840)
T ss_pred HHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccc
Confidence 9999999998765 6899999999997665 68999999999999985 44433
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=8e-08 Score=93.18 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-CCcC
Q 004324 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQ 294 (761)
Q Consensus 216 ~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-~~p~ 294 (761)
..|-.=++.+. ..+.++|..+|-+|.+ ..|..+--+.-|..+.+.+ |.++.|++++..+.++. ..-+
T Consensus 37 r~Yv~GlNfLL----s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~ 104 (389)
T COG2956 37 RDYVKGLNFLL----SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFE 104 (389)
T ss_pred HHHHhHHHHHh----hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchH
Confidence 34555566666 5778889999999887 3577666666677777766 48899999988886643 2222
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 004324 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAF 370 (761)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~ 370 (761)
.-.....-+..-|...|-+++|+.+|..+...|.. -.....-|+..|-...+|++|..+-+++.+.+..+.. ..|
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 33334444456677888899999999998875522 3556778999999999999999999999888755432 345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.-|...+....+++.|..++.+..+..-+ .+..--.+-......|+++.|.+.++...+.+..--..+...|..+|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 55666666778999999999988765211 22222344567888999999999999999987555567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---CCCHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAE 527 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---~g~~~~A~ 527 (761)
|+.+++...+..+.+ ..++...-..|-..-....-.+.|..++.+-..+ +|+...+..+|..-.. .|...+-.
T Consensus 263 g~~~~~~~fL~~~~~-~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAME-TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHH-ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhH
Confidence 999999999999886 2334444455555445555567777777666665 4999999999987653 45677888
Q ss_pred HHHHHHHHcCCccC
Q 004324 528 KIYDLMCLKKYEIE 541 (761)
Q Consensus 528 ~~~~~m~~~g~~~~ 541 (761)
.+++.|....+.-.
T Consensus 339 ~~lr~mvge~l~~~ 352 (389)
T COG2956 339 DLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888885444333
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=1.6e-08 Score=100.41 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...|...|++++|.+.+++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677778888889999999888888776532 46777888888888999999999998887653 3355677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+...|++++|.+.++........ .....+..+...|...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988874322 23456777888889999999999999998875556677888899999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+++++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988763 45677777888888899999999999888764
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=5e-08 Score=94.53 Aligned_cols=305 Identities=16% Similarity=0.125 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCChHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP--TPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 386 (761)
..+.++|.++|-+|.+.. .-+..+--+|-+.|-+.|.+|.|.++++.+.++- ...+ ..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 446899999999998842 1133444688899999999999999999988762 2111 12334567889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM----PSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
..+|..+.+.|.. -....-.|+..|-...+|++|.++-+++.+.|-.+.. .-|.-|...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999886432 2445678999999999999999999999987655442 2355566666667889999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (761)
..+-.+..+..--.+.+.+...|+++.|.+.++...+.+ |+. .+...|..+|.+.|+.+++...+.++.+..-++
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 887555666666778889999999999999999999986 453 467788999999999999999999999866556
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHhhh
Q 004324 541 ESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 541 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g 619 (761)
++.. +.+..+. ...|.-+....+.+ +.-.|..-..|-++..
T Consensus 283 ~~~l-----------------------------~l~~lie---~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~------ 324 (389)
T COG2956 283 DAEL-----------------------------MLADLIE---LQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY------ 324 (389)
T ss_pred cHHH-----------------------------HHHHHHH---HhhChHHHHHHHHHHHhhCCcHHHHHHHHHh------
Confidence 5542 1111111 12232222222233 5666765544444332
Q ss_pred hccCCCCccccCCcccchhhhhhccCccceeeeeeeCCc
Q 004324 620 EWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGH 658 (761)
Q Consensus 620 ~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~ 658 (761)
...+|.++..++..-++++|+.+-+. ....|.+==+|+
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvge~l~-~~~~YRC~~CGF 362 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVGEQLR-RKPRYRCQNCGF 362 (389)
T ss_pred hhccccccchhhhHHHHHHHHHHHHh-hcCCceecccCC
Confidence 23456666666777778888876333 334455544444
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.3e-09 Score=109.38 Aligned_cols=280 Identities=16% Similarity=0.098 Sum_probs=215.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHhhc
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL--EIQKDIYSGLIWLHSYQ 308 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~ 308 (761)
-+..+|+.+|....+. .+|+ ++...+=.+|-.. +++++|+++|+.+.+... .-+..+|+..++ -..
T Consensus 333 y~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl------~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW--HLq 401 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH---HYNTGWVLSQLGRAYFEL------IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW--HLQ 401 (638)
T ss_pred HHHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccccccchhHHHHHHH--HHH
Confidence 3578999999996653 3544 3444444555554 599999999999976542 235688887763 111
Q ss_pred cCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 309 DNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 309 ~~g~~~~a~~l~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
-+-++..+. ++... -+-...+|.++-++|+-.++.+.|.+.|++..+.+.. ...+|+.+-.-+.....+|.|.
T Consensus 402 ----~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 402 ----DEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred ----hhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHH
Confidence 123333332 22222 2335789999999999999999999999999987643 6788888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 388 EIFREMQERLGSASVPAY---HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
..|+..... |...| --|.-.|.+.++++.|+-.|+...+-. +-+.+....+...+-+.|+.++|++++++..
T Consensus 476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999987654 55554 456778999999999999999998854 3357777888889999999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.--+.|+..---.+..+...+++++|+..++++++- ++-+...|-.+...|.+.|+.+.|+.-|.-|..
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 655666666666677888889999999999999986 455567888888999999999999999998874
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=9e-07 Score=88.77 Aligned_cols=285 Identities=12% Similarity=0.021 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~-~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
.|++.+|+++..+-.+. +-.| +.+.++.+=+ ... |+.+.|-+.+.+..+..- |......+.+......
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p---~l~~l~aA~AA~qr-----gd~~~an~yL~eaae~~~--~~~l~v~ltrarlll~ 165 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP---VLAYLLAAEAAQQR-----GDEDRANRYLAEAAELAG--DDTLAVELTRARLLLN 165 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch---HHHHHHHHHHHHhc-----ccHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHh
Confidence 69999999998887665 3333 2333333322 222 588889888888876532 3344444455577778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 382 (761)
.|+...|..-..++.+.+.. +..+......+|.+.|++.....+...|.+.|.--+. .+|+.+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999888888876544 5778889999999999999999999999999875443 356666666666665
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+.-...++....+ .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+-++.+.-.+..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66555566666543 3345555667888899999999999999999998877762 222345566777777777777
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-.+..+-+...+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+..+|.+.|+..+|.+.+++-..
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77655666689999999999999999999999988875 58999999999999999999999999998773
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=1.7e-07 Score=93.77 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=184.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
..|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+.-..++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4567777777777665555443 444555556666777777777777777776445566666677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-------MPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
-++++.+.+-. +.........+|.+.|++.+...++..|.+.|+-.| ..+|+.+++=....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777665332 455566777777777777777777777777765544 2466777776666666666677777
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
...+..+.++..-.+++.-+.++|+.++|.++.++..+++ ..|+ -...-.+.+-++...=++..++-.. ..+-+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPED 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCCC
Confidence 7766666666777777778888888888888887777766 4444 2222344556666555555555442 11122
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 542 SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 542 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
+-.+.+|..-|.+++.+.+|...++ +...|+.. .|..+++.+.+.|
T Consensus 328 -------------------------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g 375 (400)
T COG3071 328 -------------------------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLG 375 (400)
T ss_pred -------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcC
Confidence 3456677777788888888888877 55566543 6778888888887
Q ss_pred hccCCCC
Q 004324 620 EWLHPSF 626 (761)
Q Consensus 620 ~~~~a~~ 626 (761)
+..+|..
T Consensus 376 ~~~~A~~ 382 (400)
T COG3071 376 EPEEAEQ 382 (400)
T ss_pred ChHHHHH
Confidence 7776664
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=8.6e-06 Score=83.10 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=276.0
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
=.+.+.+..|..+++..+..- |---..|-..+.+=-..|++..|+++|++-.+ ..|+.-+|++.|.-=. |-..
T Consensus 117 Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fEl---Ryke 189 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFEL---RYKE 189 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHH---HhhH
Confidence 347788899999999988763 33334555666666778999999999998776 4799999999999888 7899
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhhccCC
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g 311 (761)
++.|..+|+...- +.|++.+|---..-= ..+ |.+..|..+|+..++.--. .....+..+. ..-.+..
T Consensus 190 ieraR~IYerfV~---~HP~v~~wikyarFE-~k~-----g~~~~aR~VyerAie~~~~d~~~e~lfvaFA--~fEe~qk 258 (677)
T KOG1915|consen 190 IERARSIYERFVL---VHPKVSNWIKYARFE-EKH-----GNVALARSVYERAIEFLGDDEEAEILFVAFA--EFEERQK 258 (677)
T ss_pred HHHHHHHHHHHhe---ecccHHHHHHHHHHH-Hhc-----CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999875 669988876544422 222 5888888888877543211 0112222222 2222334
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHH--------HHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004324 312 DKERISLLKKEMQQAGFEEG--KEVLLSVLRVCAKEGDVEDAEK--------TWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g 381 (761)
.++.|.-+|+-.... +.-+ ...|......=-+-|+....+. -++.+++.++ .|-.+|--.+..--..|
T Consensus 259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcC
Confidence 467777777766553 2222 3344444444344555433332 2344555443 36777888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004324 382 EFMKSLEIFREMQERLGSASVP--AYHKII-----EL---LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~--t~~~li-----~~---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-- 449 (761)
+.+...++|+..... ++|-.. .|.--| -+ =....+++.+.++++..++ =++...+||.-+--+|++
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHH
Confidence 999999999988764 555321 122211 11 1346788899999999888 244456788777666664
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
+.++..|.+++...+ |..|-..+|-..|..=.+.++++.+..++++..+-+ +-|..+|......=...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI-G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI-GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 568889999888776 456778889999999999999999999999999875 557788988888888899999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~ 605 (761)
.+|.-.+.. |.-+ |+ .+.|.+.|.--...|..+.|..+++ +...+...
T Consensus 492 aifelAi~q---p~ld---------------------mp------ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 492 AIFELAISQ---PALD---------------------MP------ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHhcC---cccc---------------------cH------HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 999988852 2222 11 7889999988888899999999988 55555443
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=7e-08 Score=108.55 Aligned_cols=253 Identities=9% Similarity=-0.053 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh-------hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-------YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 346 (761)
+.+++|...|++.++.... +...+..+...+. ....++.++|...+++..+... -+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4788999999999877643 2333333322111 1234567899999988877532 25667777778888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
++++|...|++..+.++. +...|..+...|...|++++|...+++..+.. |+. ..+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999888754 56678888889999999999999999988753 432 23334455567788899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 426 KEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 426 ~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
+++.+.. .| +...+..+..+|...|+.++|...+.++....+.+....+.+...|+..| ++|...++.+.+...-.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8887654 34 44557777888888999999999998876544445566677777778777 47777777766543223
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
|...-+..++ |.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 3334444444 5556776666666 7777644
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=2e-08 Score=109.03 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=175.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 165 RVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRM 244 (761)
Q Consensus 165 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m 244 (761)
.++..+...| +.||.++|..+|.-||..|+.+.|- +|.-|.-+...-+...++.++.+.. +.++.+.+.
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~---~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK---EANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc---ccccccCCC------
Confidence 4566777788 8999999999999999999999999 9999988877778899999999988 677776654
Q ss_pred HhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHhhccCCCHHHHH---
Q 004324 245 IQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL----TSGLEIQKDIYSGLIWLHSYQDNIDKERIS--- 317 (761)
Q Consensus 245 ~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~~~~~~~g~~~~a~--- 317 (761)
.|-.-||..++.+|... |++. .++..++.+..+. ..|+.... .++.+...++.. -...|.
T Consensus 80 ------ep~aDtyt~Ll~ayr~h-GDli--~fe~veqdLe~i~~sfs~~Gvgs~e---~~fl~k~~c~p~-~lpda~n~i 146 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIH-GDLI--LFEVVEQDLESINQSFSDHGVGSPE---RWFLMKIHCCPH-SLPDAENAI 146 (1088)
T ss_pred ------CCchhHHHHHHHHHHhc-cchH--HHHHHHHHHHHHHhhhhhhccCcHH---HHHHhhcccCcc-cchhHHHHH
Confidence 58888999999999875 3222 2344444333222 22222111 111111111111 111111
Q ss_pred ------HHHHHHHHcC-CCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 318 ------LLKKEMQQAG-FEEGKEVLLS---VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 318 ------~l~~~m~~~g-~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
.++....+.+ ..|-..-++. +|+-+.. .....+++........-.|+..+|.++++.-.-+|+++.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 1122222222 1221111111 1332222 23344555544333222489999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
.++.+|.++|++.+..-|-.||-+ .+....+..+++-|.+.|+.|+..|+..-+-.+.+.|.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999998887788766 88888999999999999999999999988888877665
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.04 E-value=1.7e-07 Score=93.02 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=162.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
+..+...|++++|...+++..+.. ..+...+..+...|...|++++|.+.++...+.... +...+..+...|...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccH
Confidence 367778899999999999987753 234677888899999999999999999999987644 567788889999999999
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
++|.+.|++...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999986532 2234567778888999999999999999998854 33467888999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+..+.+...+..++..+...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88754567788888899999999999999998887653
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.9e-07 Score=90.96 Aligned_cols=403 Identities=12% Similarity=0.023 Sum_probs=251.5
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFD-FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPV 230 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~~~~~li~~~~~~~~ 230 (761)
.|-+.|.+++|.+.+.+.+.. .|+ ...|.....+|...|+|++..+--..-.+. .|+- ..+..--+++- +
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E---~ 195 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE---Q 195 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH---h
Confidence 467899999999999999985 455 788888999999999999988877766664 4442 23444444554 5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH--------HHHHHHHHHHH-cC--CCcCHHHHH
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ--------QAEFIFHNLLT-SG--LEIQKDIYS 299 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~--------~A~~~~~~m~~-~~--~~p~~~~~~ 299 (761)
.|++++|+.=. |..+++.++-... -.- .|+....+-.+ .+ +.|......
T Consensus 196 lg~~~eal~D~--------------tv~ci~~~F~n~s------~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 196 LGKFDEALFDV--------------TVLCILEGFQNAS------IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred hccHHHHHHhh--------------hHHHHhhhcccch------hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 67777665422 2333333333221 111 22222222222 11 234443333
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHHHh---CCCC---CC--
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK--EG---DVEDAEKTWLRLLE---SDNG---IP-- 366 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~--~g---~~~~a~~~~~~m~~---~g~~---~~-- 366 (761)
... ..+.... ...-..+.......+..++.. .+ .+.+|...+.+-.. .... .|
T Consensus 256 syf--~sF~~~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 256 SYF--GSFHADP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred HHH--hhccccc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchh
Confidence 332 1110000 000000000111111111110 00 12222222211110 0000 01
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 367 ----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (761)
Q Consensus 367 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 442 (761)
..+.+.-...+.-+|+...|..-|+..++..-.++ ..|--+-..|....+.++....|.+..+.. +-|..+|.-
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyH 399 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYH 399 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHh
Confidence 11111122334457899999999999987643322 237778888999999999999999988854 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
-..++.-.+++++|..=|++..+--+-++..|-.+.-+.-+.+++++++..|++.+.+ ++--...|+.....+...++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHh
Confidence 7788888899999999999998766667888888888888999999999999999998 66667899999999999999
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhc
Q 004324 523 FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQF 600 (761)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l 600 (761)
++.|.+.|+..++. .|..+. +.+... ..+-.+++-.- -.+++..|..+.+ +++
T Consensus 478 Fd~A~k~YD~ai~L--E~~~~~------------------~~v~~~----plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 478 FDKAVKQYDKAIEL--EPREHL------------------IIVNAA----PLVHKALLVLQ-WKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHHHHHHHHHhh--cccccc------------------ccccch----hhhhhhHhhhc-hhhhHHHHHHHHHHHHcc
Confidence 99999999998852 222110 011111 22222333222 3389999999988 999
Q ss_pred cccchhhHHHHHHHHHhhhhccCCCC
Q 004324 601 NENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 601 ~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+|....+|..|+.+-.+.|+.++|.+
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999888886
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=3.8e-07 Score=97.97 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-----G-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLES----- 361 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 361 (761)
.............|...|+++.|..+++...+. | ..|...+ .+.+-..|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333334334568899999999999999877654 3 1333333 334667888999999999999998763
Q ss_pred CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 004324 362 DNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQE---R--LG-SASVPA-YHKIIELLCKAEETELTESLMKEFVET- 431 (761)
Q Consensus 362 g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~t-~~~li~~~~~~g~~~~A~~l~~~m~~~- 431 (761)
|.. | -..+++.|-.+|++.|++++|...+++..+ + |. .|.+.+ ++.++..|+..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 322 1 234677788899999999999888876532 1 22 233333 667788899999999999999887652
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 432 --GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 432 --g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
-+.++ ..+++.|...|.+.|++++|.++|++++. +.. -.-..++.|...|.+.+++++|.++|.+-
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12232 45899999999999999999999999874 122 22457788889999999999999999874
Q ss_pred ----hhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 498 ----HSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 498 ----~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+.-|.-.|+. .+|..|...|.+.|++++|+++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344334443 689999999999999999999998876
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.1e-07 Score=93.04 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=218.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..-+......-..-|-..+++.+..++++.+.+..+ +....+..-|.++...|+-.+-..+=.+|.+. .+-..++|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 344566666667777889999999999999988764 35566667788999999988888888888876 4556789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+.--|...|+..+|.+.|.+.... .|. ...|..+...|+-.|..++|...+....+-++-...-+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 999898899999999999887653 222 46788889999999999999998888776222111222223345777899
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCC
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 566 (761)
++-|.++|.+.... .|-|+...+-+--.....+.+.+|..+|+..++. -++. . ..+
T Consensus 396 ~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~----ik~~--------------~----~e~ 451 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV----IKSV--------------L----NEK 451 (611)
T ss_pred HHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH----hhhc--------------c----ccc
Confidence 99999999998876 4567788888777777889999999999988731 1110 0 000
Q ss_pred CchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhcc
Q 004324 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWL 644 (761)
Q Consensus 567 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~ 644 (761)
.. ...+++.|..+|++.+..++|...++ +.+.|.++.+|..++-+|...|+++.|... |++-+ ++
T Consensus 452 ~~---w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~--------fhKaL--~l 518 (611)
T KOG1173|consen 452 IF---WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH--------FHKAL--AL 518 (611)
T ss_pred cc---hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH--------HHHHH--hc
Confidence 01 26778999999999999999999999 899999999999999999999999988873 55443 46
Q ss_pred CccceeeeeeeC
Q 004324 645 TPRALAYWFMYG 656 (761)
Q Consensus 645 ~Pd~~ty~~li~ 656 (761)
.||..+-..|++
T Consensus 519 ~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 519 KPDNIFISELLK 530 (611)
T ss_pred CCccHHHHHHHH
Confidence 676654444443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2e-08 Score=97.01 Aligned_cols=236 Identities=8% Similarity=-0.030 Sum_probs=194.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
-+-|..+|.+.|.+.+|.+.|..-.+. .|-+.||-.|-.+|.+..+++.|+.++.+-.+. ++-|+.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356889999999999999999987765 467788888999999999999999999988774 23344445567788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.++.++|.++++...+.-+.++....++..+|.-.++++.|+.+++++.+.| + -+...|+.+--+|.-.++++-++--
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-A-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-C-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999998667788888888999999999999999999999999 3 4778888888889999999999999
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
|++.+..--.++ +-..+|-.|-......|++..|.+.++ +..+|++...
T Consensus 381 f~RAlstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 381 FQRALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHHHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 999885322222 226678888877888899999999999 6778888999
Q ss_pred HHHHHHHHHhhhhccCCCCccccCCcccchhhh
Q 004324 608 SVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLI 640 (761)
Q Consensus 608 ~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~ 640 (761)
++.|+-+-.+.|+.++|.. ++.-|..+.+.|-
T Consensus 432 lnNLavL~~r~G~i~~Ars-ll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARS-LLNAAKSVMPDMA 463 (478)
T ss_pred HHhHHHHHhhcCchHHHHH-HHHHhhhhCcccc
Confidence 9999999999999999885 4444544455553
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=6.5e-05 Score=76.90 Aligned_cols=390 Identities=11% Similarity=0.127 Sum_probs=275.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|..+|+...... ..+...|-.-+.+=.|+..+..|+.+|++....=...|-. |---+..=- ..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE---~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE---MLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH---HhcccH
Confidence 4567889999999999876 4578889999999999999999999999987642222333 333333222 369999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
.|.++|..-.+ ..|+.-.|++.|+-=.+-. .++.|..++++.+-.. |++ -+++-.+..--++|....
T Consensus 159 gaRqiferW~~---w~P~eqaW~sfI~fElRyk------eieraR~IYerfV~~H--P~v--~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 159 GARQIFERWME---WEPDEQAWLSFIKFELRYK------EIERARSIYERFVLVH--PKV--SNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHHHHHHhh------HHHHHHHHHHHHheec--ccH--HHHHHHHHHHHhcCcHHH
Confidence 99999998765 6799999999999766643 8999999999987544 444 444444466677888999
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChH---HHHHH
Q 004324 316 ISLLKKEMQQA-GF-EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGEFM---KSLEI 389 (761)
Q Consensus 316 a~~l~~~m~~~-g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~---~A~~~ 389 (761)
|..+|...... |- .-+...+++...-=.++..++.|.-+|...+..-+.-. ...|......=-+-|+.. ++.--
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999876553 21 11223344444444467788899999988887643321 334444444434445543 33322
Q ss_pred -----HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHH
Q 004324 390 -----FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMY---LNLGMHD 454 (761)
Q Consensus 390 -----~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~---~~~g~~~ 454 (761)
++.+.+. -+-|-.+|--.+.--...|+.+...++++..+.. ++|-. ..|.-+=-++ ....+++
T Consensus 306 KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2333333 3457778877777778889999999999998875 45521 2222222222 2357889
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLK----NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
.+.++++.+++-++...+||.-+--+|+ ++-++..|.+++...+.. -|-..+|...|..=.+.+.++...+++
T Consensus 384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999877777788877766666 467899999999988765 488889999999999999999999999
Q ss_pred HHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhcc
Q 004324 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFN 601 (761)
Q Consensus 531 ~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 601 (761)
++.++ -+|. |..+|.-....-...|+.+.|..++.+.+.
T Consensus 461 Ekfle----~~Pe----------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 461 EKFLE----FSPE----------------------------NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHh----cChH----------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99985 2333 366777777666778999999999995554
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=3.8e-07 Score=102.64 Aligned_cols=214 Identities=12% Similarity=0.028 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 311 IDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCA---------KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
.+.++|..+|++..+. .|+. ..|..+..++. ..+++++|...+++..+.++. +...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 3467899999988764 5543 44555544443 234588999999999998754 678888888899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. |+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998763 3346678888899999999999999999999854 43 22334455567778999999999
Q ss_pred HHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 460 FSECLEKCRP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 460 ~~~m~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+.+..+...| +...+..+...|...|++++|...+.++.... |+ ....+.+...|+..| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998764444 45567888899999999999999999987652 44 444555556677777 588888888764
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=2.8e-06 Score=92.49 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
.-+...|-..|+.++|+++.++..+. .|+ +..|..-...|-..|++.+|.+.++..+... .-|...-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 33455566666666666666666554 344 3345555566666666666666666666544 2245555555555666
Q ss_pred cCCHHHHHHHHHHHHh-CCCC--CHH----HH--HHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 450 LGMHDRLHLAFSECLE-KCRP--NRT----IY--GIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~~~p--~~~----~~--~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.|++++|.+++....+ +..| |.. .| .-...+|.+.|++..|++-|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666666654 2111 111 11 223556777777777776665543
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=8.3e-06 Score=88.87 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=210.1
Q ss_pred hhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcC
Q 004324 150 LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMT-FHILIVAYLSA 228 (761)
Q Consensus 150 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~-~~~li~~~~~~ 228 (761)
-...+...|++++|++.+..-.+. +.............|.+.|+.++|..++..+.+++ |+... |..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 333566889999999999876554 56677888899999999999999999999999985 45555 55555555210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH-HHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004324 229 P--VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ-QAEFIFHNLLTSGLEIQKDIYSGLIWLH 305 (761)
Q Consensus 229 ~--~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~ 305 (761)
. .....+...++|+++... -|.......+.-.+.. | ..+. .+...+..+..+|++ .+++.+- .
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~--g----~~F~~~~~~yl~~~l~KgvP---slF~~lk--~ 151 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLE--G----DEFKERLDEYLRPQLRKGVP---SLFSNLK--P 151 (517)
T ss_pred cccccccHHHHHHHHHHHHHh---CccccchhHhhcccCC--H----HHHHHHHHHHHHHHHhcCCc---hHHHHHH--H
Confidence 0 123578889999999874 2654444333322322 1 1443 566667778888975 4455444 2
Q ss_pred hhccCCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004324 306 SYQDNIDKERISLLKKEMQQA----G----------FEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA 369 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 369 (761)
.|.......-...++...... | -.|.. .++.-+...|-..|++++|.++.++.++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 333333444555555554432 1 12333 34456677788999999999999999998754 3778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--H
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP------SY--I 441 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~--~ 441 (761)
|..-...|-+.|++.+|.+.++........ |...=+..+..+.++|++++|.+++....+.+..|-.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 888999999999999999999999876432 66666778889999999999999999998877644321 11 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
-...+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456789999999999988887764
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=2.7e-05 Score=84.53 Aligned_cols=397 Identities=10% Similarity=0.042 Sum_probs=234.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCC-H
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPR-P 254 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~ 254 (761)
+..+..+|-.|.-++.++|++..+-+.|++....-+ -....|+.+-..|. -.|.-..|+.+++.-.... -.|+ .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~s---aag~~s~Av~ll~~~~~~~-~~ps~~ 393 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYS---AAGSDSKAVNLLRESLKKS-EQPSDI 393 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHH---HhccchHHHHHHHhhcccc-cCCCcc
Confidence 677899999999999999999999999999765422 25678888888888 5888999999998876531 2254 4
Q ss_pred HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHH--cCCCcC--HHHHHHHHHHHhh--ccCC-------CHHHHHHHHH
Q 004324 255 SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT--SGLEIQ--KDIYSGLIWLHSY--QDNI-------DKERISLLKK 321 (761)
Q Consensus 255 ~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~--~~~~p~--~~~~~~li~~~~~--~~~g-------~~~~a~~l~~ 321 (761)
..+-..-..|.+.. |.++++...-.+.+. .+..-. ...|-.+-..++. .... ...+++..++
T Consensus 394 s~~Lmasklc~e~l-----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred hHHHHHHHHHHhch-----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 44444444555554 366666665555544 111111 1122222111221 1111 1256677777
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC
Q 004324 322 EMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGS 399 (761)
Q Consensus 322 ~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 399 (761)
+..+.+ -.|+..-|-+ --|+..++++.|.+..++..+.+..-+...|..|.-.+.-.+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 776654 4454444433 346788899999999999999876778999999999999999999999999875543 21
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------cCCC-----C--CHHHHHHHHHHHHhcC
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVE---------------------TGMK-----P--LMPSYINLTNMYLNLG 451 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------------------~g~~-----p--d~~t~~~li~~~~~~g 451 (761)
|.+....-|..=...++.++|+.+...+.. .|+. | ...++..+..-....+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 111111111111223444444443333321 0110 0 1122222221111110
Q ss_pred ---CHHHHHHHHHHHHh---CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 452 ---MHDRLHLAFSECLE---KCRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 452 ---~~~~a~~~~~~m~~---~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
..+.. +.+ .-.|+ ...|....+.+.+.+..++|...+.+.... .+-....|.-.-..+..
T Consensus 625 ~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 625 KSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEV 696 (799)
T ss_pred hhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHH
Confidence 00000 111 01122 235566677778888888888777777665 33455566666666777
Q ss_pred CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHH--HHH
Q 004324 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRH--MIR 597 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~ 597 (761)
.|++++|.+.|..... ++|+. +-+..+|...+...|+-..|.. +..
T Consensus 697 ~~~~~EA~~af~~Al~----ldP~h----------------------------v~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA----LDPDH----------------------------VPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHhhHHHHHHHHHHHh----cCCCC----------------------------cHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 8888888888887764 55542 3344445555555555555544 444
Q ss_pred --hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 598 --FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 598 --~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..++|.+..++..++.++.+.|+.++|..
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 66677777777777777777777666654
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-05 Score=80.67 Aligned_cols=339 Identities=13% Similarity=0.088 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN 258 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 258 (761)
+...--..+.+|-..++-+.|.....+.+..-..| --|.|+.-+-. ..++..++.--+.+.... . |= --
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p---~inlMla~l~~--~g~r~~~~vl~ykevvre--c-p~---aL 164 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP---RINLMLARLQH--HGSRHKEAVLAYKEVIRE--C-PM---AL 164 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccch---hHHHHHHHHHh--ccccccHHHHhhhHHHHh--c-ch---HH
Confidence 33344456677777788888888877766542222 22333333332 223333333333333332 1 10 11
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 004324 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEGKEVLLS 337 (761)
Q Consensus 259 ~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ 337 (761)
..|.++.+. -+..+..-=..|-...+.|..++...-+...+.+-.++...|..++--+.... +.-|+.....
T Consensus 165 ~~i~~ll~l-------~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~ 237 (564)
T KOG1174|consen 165 QVIEALLEL-------GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA 237 (564)
T ss_pred HHHHHHHHH-------hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH
Confidence 122222221 12222222233444445555566665666667777777777777666555444 4446677788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (761)
Q Consensus 338 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (761)
+...+...|+.++|.-.|+.....++. ++.....-.-.+.+.|+.+....+...+... .+-+..-|-.-...+....+
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhh
Confidence 999999999999999999988776532 1111111233345678888888887777654 11234445555556667788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
++.|+.+-++.++.. .-+...|..=...+...+++++|.-.|+....--+-+..+|.-|+..|.-.|++.+|.-+-+..
T Consensus 316 ~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 316 FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 888888888877743 2234555555566778899999999998877644568889999999999999999998887776
Q ss_pred hhCCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 498 HSDQTIGVNTRSCNIIL-SAYL-SSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 498 ~~~g~~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
... ++.+..+.+.+- ..|. ...--++|.+++++- ...+|+.
T Consensus 395 ~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~----L~~~P~Y 437 (564)
T KOG1174|consen 395 IRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS----LKINPIY 437 (564)
T ss_pred HHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh----hccCCcc
Confidence 654 445666665442 2222 222346777777654 4466654
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.4e-05 Score=80.47 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=245.9
Q ss_pred hhcCCccchhhHHHHHHhhhcccCCcchhh-hhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 004324 120 CKELPSHKGGTLVRILNAQKKWLRQEDGTY-LAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (761)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~-~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (761)
-+.+.++.+..++..-. .++||.-+| ... ++...|+++...+--....+.. +.-+..+..-..++-+.|++
T Consensus 126 f~~kkY~eAIkyY~~AI----~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAI----ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhcccHHHHHHHHHHHH----hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccH
Confidence 36677788888877643 378985444 333 5567899999888888777754 33455666666777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---------HHh-cCCCCCCHHHHHHHHHHHHc
Q 004324 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR---------MIQ-LGGYQPRPSLHNSLFRALVS 266 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~---------m~~-~~g~~p~~~t~~~ll~~~~~ 266 (761)
++|+.= +|-.+++.+|. ...-.--+.+++++ |.+ ...+-|.....++.+..+-.
T Consensus 200 ~eal~D-------------~tv~ci~~~F~---n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 200 DEALFD-------------VTVLCILEGFQ---NASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHh-------------hhHHHHhhhcc---cchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 777432 33344444443 12222222333322 221 11355666555555554432
Q ss_pred CCCC-----C--chhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---cCCCCC-----
Q 004324 267 KPGG-----L--SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ---AGFEEG----- 331 (761)
Q Consensus 267 ~~g~-----~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~---~g~~p~----- 331 (761)
.... . ....+.++.+-+..-...| +.+|...+.+-.. ....-+
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~----------------------Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEG----------------------YLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchh----------------------HHHHHHHHHHHhhhhhhhccccccchh
Confidence 1100 0 0001222222222111111 1122211111100 000001
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 332 ----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 332 ----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..+....-..+.-.|+.-.|.+-|+..++....++ ..|--+..+|....+.++-...|++..+..- -|..+|..
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyH 399 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYH 399 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHh
Confidence 11222222234457888899999999988876543 3377788899999999999999998876532 25566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
=...+.-.+++++|..=|++.+... +-+...|.-+.-+..+.+++++++..|++.++.++.-+.+||-....+...+++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 7777777888999999999888743 224667777777778889999999999999988888899999999999999999
Q ss_pred HHHHHHHHHhhhCCC----CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcc
Q 004324 488 EKAEEIFNHMHSDQT----IGVNTR--SCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKK 561 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~----~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 561 (761)
++|.+.|+..++... +-.+.. .--+++..=- .+++..|++++.+..+ ++|..
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e----~Dpkc----------------- 536 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE----LDPKC----------------- 536 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc----cCchH-----------------
Confidence 999999998876320 111122 2222222222 3788888888888875 66653
Q ss_pred cccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 562 PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 562 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
...|-+|...-.+.|++++|.++++
T Consensus 537 -----------e~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 537 -----------EQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred -----------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5667777777788899999998887
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.78 E-value=2.6e-06 Score=91.68 Aligned_cols=238 Identities=13% Similarity=0.145 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-C
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-----DNG-IPTP-AFVYKMEAYAKIGEFMKSLEIFREMQER-----L-G 398 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 398 (761)
..|+..+...|...|+++.|+.+++...+. |.. |.+. ..+.+...|...+++++|..+|+++..- | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667999999999999999999887664 321 2222 2334677899999999999999998532 2 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----C
Q 004324 399 SA-SVPAYHKIIELLCKAEETELTESLMKEFVE---T--GM-KPLM-PSYINLTNMYLNLGMHDRLHLAFSECLE----K 466 (761)
Q Consensus 399 ~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~-~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~----~ 466 (761)
.| -..+++.|-..|++.|++++|...+++..+ . |. .|.+ ..++.+...|+..+.+++|..++....+ -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 234577788889999999999998888765 1 22 2222 3466777889999999999999998765 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 467 CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD-----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 467 ~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..++ ..+|+.|...|-+.|++++|.++|++.... |...+. ...++-|..+|.+.+++.+|.++|.+-..-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 358999999999999999999999987653 112222 467788899999999999999999887521
Q ss_pred --CCccC-hHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 537 --KYEIE-SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 537 --g~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
-++|+ |++ ..+|..|...|...|+++.|.++..
T Consensus 439 ~~~~g~~~~~~----------------------------~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 439 MKLCGPDHPDV----------------------------TYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHhCCCCCch----------------------------HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11121 121 6789999999999999999998865
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=0.00013 Score=77.87 Aligned_cols=370 Identities=12% Similarity=0.054 Sum_probs=231.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.....+++++|.+.+....+.+ +.|..++--|--.=+..|+++.....-.+..+... .....|.....++. -.|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~---L~g 157 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQH---LLG 157 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHH---HHH
Confidence 3445678999999999999886 66888877766666677888877777666665421 14567877777666 489
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+...|..+.++..+...-.|+...|.-...-+.+.+--...|.+++|.+.+..-...- .|...+ -.+....+.+.++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~-~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAF-EETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHH-hhhHHHHHHHHhh
Confidence 9999999999998863235777776655554443221111145666666655432211 111111 1223345567788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCA-KEGDVEDAE-KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (761)
.++|..++..+... .||..-|.-.+..+. +..+.-++. .+|....+.-.......... ++..-.....+..-+++
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHHhCcchhHHHHHHHH
Confidence 99999999999876 578777776555444 455555555 66666555422111110000 11111123344455677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC----------CCCHH--HHHHHHHHHHhcCCHH
Q 004324 391 REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE----TGM----------KPLMP--SYINLTNMYLNLGMHD 454 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~----------~pd~~--t~~~li~~~~~~g~~~ 454 (761)
..+.++|+++--.. +.+-|-.-...+--.++.-.+.. .|. .|... |+-.++..|-+.|+++
T Consensus 312 ~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 77788887653333 33333222211111122222211 111 34433 4456788889999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|....+......+--+..|..=...+...|.+++|..++++..+-+ .||...=.--..-..++.+.++|.++.....
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999999887665556677777888999999999999999998875 3554433344555668899999999999999
Q ss_pred HcCCc
Q 004324 535 LKKYE 539 (761)
Q Consensus 535 ~~g~~ 539 (761)
+.|.+
T Consensus 467 r~~~~ 471 (700)
T KOG1156|consen 467 REGFG 471 (700)
T ss_pred hcccc
Confidence 88763
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=5.9e-07 Score=87.13 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=186.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF-VYKMEAYAKIG 381 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g 381 (761)
+..+|.+.|.+.+|.+.|+.-... .|-..||..|-++|.+....+.|..++.+-.+.- |-.+|| .-+...+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHH
Confidence 347888999999999999887765 5567788889999999999999999999887764 334444 44677788889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
+.++|.+++++..+. .+-++.+...+..+|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 3446777777888899999999999999999999965 56788888888888999999999999
Q ss_pred HHHh-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 462 ECLE-KCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 462 ~m~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.... --.| -..+|-.|....+..|++.-|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..+++....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8875 2223 35578888888889999999999999988775 34567899988888899999999999998874
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.1e-05 Score=84.53 Aligned_cols=281 Identities=13% Similarity=0.064 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN 258 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 258 (761)
++.+.....+-+-..+++.+..++++...+.. .+....+..=|.++. ..|+..+-..+=.+|.+. .+-...+|-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~---el~~~n~Lf~lsh~LV~~--yP~~a~sW~ 316 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLY---ELGKSNKLFLLSHKLVDL--YPSKALSWF 316 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHH---HhcccchHHHHHHHHHHh--CCCCCcchh
Confidence 33334444444445555555555555555442 123333444444444 455555544444555543 222233333
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc--C-CCCCHHHH
Q 004324 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA--G-FEEGKEVL 335 (761)
Q Consensus 259 ~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~ 335 (761)
++---|... |...+|.+.|.+....+. ..--.|+..++.++..+..+.|+..+...-+. | ..| +
T Consensus 317 aVg~YYl~i------~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~ 383 (611)
T KOG1173|consen 317 AVGCYYLMI------GKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----S 383 (611)
T ss_pred hHHHHHHHh------cCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----H
Confidence 332222221 245555555554433221 12223444445555555555555444433221 1 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
--+---|.+.++++.|.+.|.+.....+. |..+.+-+.-..-+ .
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~-----------------------------------~ 427 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYT-----------------------------------Y 427 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeeh-----------------------------------H
Confidence 11222344444555555554444433221 33334433333333 4
Q ss_pred CCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 416 EETELTESLMKEFVET------GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
+.+.+|...|+..+.. ...--..+++.|..+|.+.+..++|...|++.+...+.+..+|.++.-.|...|+++.
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 4444444444444310 0112456788899999999999999999999888788899999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 490 AEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
|.+.|++... +.||..+-..++..+
T Consensus 508 Aid~fhKaL~---l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 AIDHFHKALA---LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHh---cCCccHHHHHHHHHH
Confidence 9999999887 458887777777643
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=1.6e-05 Score=81.81 Aligned_cols=215 Identities=15% Similarity=0.101 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 312 DKERISLLKKEMQQAG-FEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
..+.++.-+.++.... +.|+ ...|..+...|.+.|+.++|...|....+..+. +...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554321 2222 234555556667777777777777777766543 46677777777777777777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|+...+. .| +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.......
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 77777654 23 3456666666677777777777777777664 3332211122222334566777777776554433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+...| .+ .+...|+..++ +.++.+.+... +.| ...+|..+...+.+.|++++|+..|++..+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3332222 22 22234444433 24444432110 011 234677777777788888888888887775
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=1.3e-05 Score=82.47 Aligned_cols=231 Identities=11% Similarity=-0.010 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 273 KYYLQQAEFIFHNLLTSG-LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
.+..+.+..-+.+++... ..|+...-.+...+..+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 367788888898888654 33443333444555778899999999999999887632 2578899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
.+.|+...+..+. +..+|..+...|...|++++|.+.|+...+. .|+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987654 5678888999999999999999999998875 344332222222334567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-------PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
. .|+... ..+.. ...|+...+ +.+..+.+.+. ....+|..+...|.+.|++++|...|++....+ +
T Consensus 195 ~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred C-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 2 333222 22332 335555444 35555553222 234689999999999999999999999999875 4
Q ss_pred CCHHHHHHHH
Q 004324 505 VNTRSCNIIL 514 (761)
Q Consensus 505 p~~~t~~~li 514 (761)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5666655444
No 74
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=1.8e-08 Score=65.20 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 397 LGSASVPAYHKIIELLCKAEETELTESLMKEF 428 (761)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 428 (761)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.3e-08 Score=64.64 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666555
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=0.00011 Score=78.28 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASV--PAYHKIIEL 411 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~~ 411 (761)
...+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++.....- .|+. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 334455666777777777777777766533 345566666777777777777777776654321 1222 234456666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC--CCHHHHHHHHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGM-KPLMPSY-I--NLTNMYLNLGMHDRLHLA---FSECLEKCR--PNRTIYGIYLESLK 482 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~-~--~li~~~~~~g~~~~a~~~---~~~m~~~~~--p~~~~~~~li~~~~ 482 (761)
+...|+.++|..++++...... .+..... + .++.-+...|....+.++ ......... ......-....++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 7777777777777777654221 1112111 1 223333333433322222 111111111 11122235667778
Q ss_pred hcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g-------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..|+.++|..+++.+.... .............-++...|++++|.+.+.+...
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999998886632 0001122223333455689999999999988875
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=7.3e-05 Score=80.10 Aligned_cols=390 Identities=13% Similarity=0.116 Sum_probs=221.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|.+..|.+.-..=.. +..|......+..++.|..-+++|-.+|+.+... .-.+.+|- +..
T Consensus 624 lyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fk---kgd 688 (1636)
T KOG3616|consen 624 LYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFK---KGD 688 (1636)
T ss_pred HHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHH---ccc
Confidence 56677776665543221111 3345556666666666777777777777776541 22344444 344
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
-+.+|+++-+-. ++..+++.----....... |+++.|..-|-+... . .-.+.+..+...
T Consensus 689 af~kaielarfa-----fp~evv~lee~wg~hl~~~-----~q~daainhfiea~~--------~---~kaieaai~ake 747 (1636)
T KOG3616|consen 689 AFGKAIELARFA-----FPEEVVKLEEAWGDHLEQI-----GQLDAAINHFIEANC--------L---IKAIEAAIGAKE 747 (1636)
T ss_pred HHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHH-----HhHHHHHHHHHHhhh--------H---HHHHHHHhhhhh
Confidence 455565553321 1111121111100000001 345555444433210 0 001134445667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
|.+|+.+++.++..... ..-|..+..-|+..|+++-|+++|-+. ..++-.|.+|.+.|+|+.|.++-.+
T Consensus 748 w~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 89999999888765332 334667788899999999999998542 3456778999999999999988655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
. .|-...+..|-+-..-+-++|++.+|.+++-.+. .|+ ..|.+|-+.|..+...++..+-.- ..-..
T Consensus 817 ~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~--d~l~d 883 (1636)
T KOG3616|consen 817 C--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG--DHLHD 883 (1636)
T ss_pred h--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh--hhhhH
Confidence 4 3334456677777777888999999988875432 344 357888889988888887765431 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHH--
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDY-- 550 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~-- 550 (761)
|.-.+..-|-..|++..|..-|-+.. -|.+-++.|..++.|++|.++-+.= | +-+.. .+...
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte---g-g~n~~--k~v~flw 947 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAE--KHVAFLW 947 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHH--HHHHHHH
Confidence 55667777888899999887775432 3666778888888888888775531 1 12211 22222
Q ss_pred HHhhhhhh-hcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 551 VLSLNRKE-VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 551 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+-.++.+. ++ +-- ..-..-.-+.-.+..+.++-|..+.++..........+-++..+...|++++|.+
T Consensus 948 aksiggdaavk------lln--k~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 948 AKSIGGDAAVK------LLN--KHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHhhCcHHHHH------HHH--hhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 22222210 00 000 0000111111223334444555554555544445556667777788888888865
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=0.00037 Score=68.88 Aligned_cols=346 Identities=11% Similarity=0.052 Sum_probs=201.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
..-+.|++++|+.++..+.... .++...+--|..++.-.|.+.+|..+-...+ +....+.|+--++. +.+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlah--kln 135 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAH--KLN 135 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH--HhC
Confidence 4458999999999999998865 5566666666666667889999988866553 44455556655554 788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+-++-+.+-..+... .-|..+..++ .|.+. ++++|.+++.+++..+.. -...+.. ++.+|.+..-
T Consensus 136 dEk~~~~fh~~LqD~---~EdqLSLAsv--hYmR~-------HYQeAIdvYkrvL~dn~e--y~alNVy-~ALCyyKlDY 200 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT---LEDQLSLASV--HYMRM-------HYQEAIDVYKRVLQDNPE--YIALNVY-MALCYYKLDY 200 (557)
T ss_pred cHHHHHHHHHHHhhh---HHHHHhHHHH--HHHHH-------HHHHHHHHHHHHHhcChh--hhhhHHH-HHHHHHhcch
Confidence 877777776666542 2333333222 23443 899999999998866532 2222221 2356667766
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh--cCChHHHHH------------HHHHHHhCCC------------CC
Q 004324 313 KERISLLKKEMQQAGFEEGK-EVLLSVLRVCAK--EGDVEDAEK------------TWLRLLESDN------------GI 365 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~--~g~~~~a~~------------~~~~m~~~g~------------~~ 365 (761)
++-+.+++..-.+. .||. ...|.......+ .|+..+++. ..+.+.+.++ -|
T Consensus 201 ydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 77777777766654 3443 333332222222 122222110 1111222110 00
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcC-------CHHHHHHHHHHHHHc
Q 004324 366 -----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL--LCKAE-------ETELTESLMKEFVET 431 (761)
Q Consensus 366 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g-------~~~~A~~l~~~m~~~ 431 (761)
-...--.|+--|.+.+++.+|..+.+++. |.. -|.-++.| ++..| .+.-|.+.|+..-..
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----Ptt-P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTT-PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcC-----CCC-hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 01222345556778888888888776553 221 12223332 22222 245566666655555
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 432 GMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 432 g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
+..-|. .---++...+.-..++++.+..++.+..- ...|...| .+..+++..|++.+|+++|-...... + -|..+
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~-i-kn~~~ 429 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE-I-KNKIL 429 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh-h-hhhHH
Confidence 544332 22334555555666778888777777662 33344444 45788888899999999987766544 3 25566
Q ss_pred HHHHH-HHHHhCCCHHHHHHHHHHHH
Q 004324 510 CNIIL-SAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 510 ~~~li-~~~~~~g~~~~A~~~~~~m~ 534 (761)
|.+++ .+|.++++++.|.+++-++-
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 65554 67788888888877766653
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=0.00036 Score=74.37 Aligned_cols=309 Identities=10% Similarity=0.001 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH-
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIV-AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS- 255 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~-~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~- 255 (761)
....|..+...+...|+.+.|.+.+....+... .++...-..+-. .+. ..|++++|.+++++..+. .|+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~---~~g~~~~A~~~~~~~l~~---~P~~~~ 78 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW---IAGDLPKALALLEQLLDD---YPRDLL 78 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---CCCcHH
Confidence 345566666667777888887776666554321 223222222111 122 479999999999998874 35433
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.+.. ...+... |. ..|....+.+.+.. .....|+ ..+...+....+...|++++|...+++..... ..+...+
T Consensus 79 a~~~-~~~~~~~-~~-~~~~~~~~~~~l~~--~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~ 151 (355)
T cd05804 79 ALKL-HLGAFGL-GD-FSGMRDHVARVLPL--WAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV 151 (355)
T ss_pred HHHH-hHHHHHh-cc-cccCchhHHHHHhc--cCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence 3331 1111110 00 01345555555544 1122222 23333344467788899999999999998764 2345677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HH
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAY-H--KI 408 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~l 408 (761)
..+..+|...|++++|...++........ ++ ...|..+...+...|+.++|..+|++...... .+..... + .+
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL 231 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH
Confidence 88888999999999999999988876432 22 23466788899999999999999999854322 1222211 1 23
Q ss_pred HHHHHhcCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C------HHHHH
Q 004324 409 IELLCKAEETELTESL--MKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---N------RTIYG 475 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l--~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~------~~~~~ 475 (761)
+.-+...|....+.+. +........ ............++...|+.+.|..++..+...... . +...-
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 3333444433333332 111111111 111122235666777889999999999998752111 1 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..--++...|+.++|.+++......
T Consensus 312 l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 312 AEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233455789999999999887653
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.0022 Score=68.86 Aligned_cols=365 Identities=12% Similarity=0.099 Sum_probs=224.9
Q ss_pred CCcchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 143 RQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 143 ~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
.+++.+.--+.+...|+-++|....+.-.+.. .-+.+.|..+.-.+-...++++|.+.|......+-. |...|.-+-
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDls 116 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLS 116 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34444444445557888888888888887765 345667776666666677899999999887775322 445555432
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-CCcCHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN-SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQKDIYSG 300 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~-~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ 300 (761)
--=+ +.|+++.....-.+..+. .|+...+- ...-+.-- . |....|..+.++..+.. -.|+...+..
T Consensus 117 lLQ~---QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L-~-----g~y~~A~~il~ef~~t~~~~~s~~~~e~ 184 (700)
T KOG1156|consen 117 LLQI---QMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHL-L-----GEYKMALEILEEFEKTQNTSPSKEDYEH 184 (700)
T ss_pred HHHH---HHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 2223 457777777777776653 35444332 22222211 2 58999999999887665 3455555543
Q ss_pred HH----HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 004324 301 LI----WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKM 374 (761)
Q Consensus 301 li----~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li 374 (761)
.. ........|..++|++.+..-... ..|...+ -+-...+.+.+++++|..++..+...++ |...|. -+.
T Consensus 185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn~~Yy~~l~ 260 (700)
T KOG1156|consen 185 SELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--DNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--hhHHHHHHHH
Confidence 22 234456777788888777654332 2233333 3455667899999999999999999874 555554 455
Q ss_pred HHHHHcCChHHHH-HHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 375 EAYAKIGEFMKSL-EIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 375 ~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.++.+..+.-+++ .+|....+. .-.|-....+.+. -..-.+..-.++..+.+.|+.+ ++..+...|-..
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhch
Confidence 6665555555555 666666543 1112111111111 1223344556677778888765 344444444433
Q ss_pred CCHHHHHHHHHHHH---hCC------------CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHH
Q 004324 451 GMHDRLHLAFSECL---EKC------------RPNRTIYGI--YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNI 512 (761)
Q Consensus 451 g~~~~a~~~~~~m~---~~~------------~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~ 512 (761)
...+-..++.-.+. .+. +|....|.. ++..|-+.|+++.|..+++....+- |+. .-|.+
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT---PTliEly~~ 410 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT---PTLIELYLV 410 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---chHHHHHHH
Confidence 22222222222222 122 566666654 6788889999999999999999873 554 45666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
=...+.+.|++++|..++++.++-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Confidence 668899999999999999999863
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00028 Score=71.28 Aligned_cols=266 Identities=13% Similarity=0.037 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCC
Q 004324 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329 (761)
Q Consensus 252 p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~ 329 (761)
-|+.....+-+.+... |+.++|...|+.....++. -..+.|..++ ...|+.++...+...+.... +
T Consensus 230 ~NvhLl~~lak~~~~~------Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-----~~eg~~e~~~~L~~~Lf~~~-~ 297 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYN------GDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-----GQEGGCEQDSALMDYLFAKV-K 297 (564)
T ss_pred ccHHHHHHHhhhhhhh------cCchHHHHHHHHHhhCChhhhhhHHHHHHHH-----HhccCHhhHHHHHHHHHhhh-h
Confidence 3444444444444443 4666777777665543311 1123333332 44555666666555554331 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
-...-|-.-.......++++.|..+-++.++.+.. ++..|-.-...+...|+.++|.-.|+..+... +-+...|.-|+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~ 375 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLF 375 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 11222222233334566777777777776665533 44455444566777788888888888776541 23677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-NMYLNL-GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-~~~~~~-g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
..|...|.+.+|.-+-++..+. +.-+..+.+.+. ..|.-. ..-++|.+++++-++.-+.-....+.+...+...|+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc
Confidence 8888888888887766665542 223344444442 223222 2356788888877654344456777788888888999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++..+++.-... .||....+.|...+...+.+.+|.+.|...++
T Consensus 455 ~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 455 KDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred chHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999888774 48888899999999888999999999988874
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=4.3e-06 Score=84.88 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|.+..+..-.+ .. ...+....-.-.....++...|+.+.++ .++... -.|.......+...+....+-+.+..
T Consensus 15 G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 15 GNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp T-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 46666664444 21 2223333333333346666677666443 333333 36666666555444444344445544
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 354 TWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 354 ~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
-+++....... .+..........|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+..
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44443333322 22333333345677789999999998753 367777888999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 433 MKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
.| .+...|..++.. ...+.+|..+|+++.+.+.++..+.|.+..++...|++++|.+++.+....+ +-|..
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHH
Confidence 34 344445444433 3469999999999988888999999999999999999999999999988765 34667
Q ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (761)
|...+|......|+. +.+.+++.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 778889999885
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.50 E-value=0.0031 Score=67.47 Aligned_cols=369 Identities=13% Similarity=0.121 Sum_probs=227.4
Q ss_pred HHhccCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCCCCCCH--HHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHW-----YRFDFALATKLADYMGKERKFAKC---RDIFDDIINQGRVPSE--MTFHILI 222 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A---~~~f~~m~~~g~~pd~--~~~~~li 222 (761)
.++..+++++|.+.+..+..+.. .+.+...|+-+-+..++.-+.-.- ..++..+..+ -+|. ..|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 44567777777777776654321 244666677777766665443322 2333333332 3453 5699999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC--------------CCCCc--hhhHHHHHHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK--------------PGGLS--KYYLQQAEFIFHNL 286 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~--------------~g~~~--~g~~~~A~~~~~~m 286 (761)
.-|. +.|.+++|..+|.+..+. ...+.-|+.+.++|+.- .++-. .-+++-...-|+.+
T Consensus 256 dYYI---r~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 256 DYYI---RSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHH---HhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 9999 799999999999998764 35566677777776541 00000 01344445555555
Q ss_pred HHcCCCc-C--------HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHH
Q 004324 287 LTSGLEI-Q--------KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG------KEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 287 ~~~~~~p-~--------~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a 351 (761)
+...... + ..+-.|+- ......|+..+....|.+..+. +.|- ...|..+.+.|-..|+++.|
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 5443211 0 11222332 2234456677788888887764 3332 34577888899999999999
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----------CCCC------CHHHHHHHHHH
Q 004324 352 EKTWLRLLESDNGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQER-----------LGSA------SVPAYHKIIEL 411 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~p------~~~t~~~li~~ 411 (761)
+.+|++..+...+-- ..+|..-..+=.+..+++.|+++.+....- +.++ +...|...++-
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999988765421 345666666667778888898887765321 1111 22345555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-HHHHHHHHHHHHhc---CC
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-RPN-RTIYGIYLESLKNA---GN 486 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~p~-~~~~~~li~~~~~~---g~ 486 (761)
--..|-++....+++.+.+..+.......|- .--+-...-++++.+++++-+.-+ .|+ ...||..+..+.+. -.
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 5566788888889999988665432222221 111233345777877777765522 233 34788887776653 37
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~m~~ 535 (761)
++.|..+|++..+ | ++|...-+--|+-+ =-+.|....|+.++++...
T Consensus 566 lEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 566 LERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999998 5 66654333222211 1257899999999999764
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.49 E-value=0.0033 Score=67.36 Aligned_cols=368 Identities=12% Similarity=0.095 Sum_probs=197.8
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
.+.+++..-+..|+.....-.+.....+|.-.+......|-++-+.+++++-.+. ++..-+--|.-++ +.+++
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~---~~d~~ 185 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA---KSDRL 185 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH---hccch
Confidence 3555566666666666554334444556777777777778888888888887774 4455666777777 67888
Q ss_pred HHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 235 DEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 235 ~~A~~l~~~m~~~~-----g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
++|-+.+....... ..+-+-..|.-+-...++.... +.--....+++.+... -+|..-+-|..++.-|.+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~---~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK---VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch---hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 88888777765321 0122223333333333332110 0111122222222211 233444444444455566
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------------------------------------
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA---------------------------------------------- 343 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~---------------------------------------------- 343 (761)
.|.+++|..+|++-.+.-+ .+.-|+.+.++|+
T Consensus 261 ~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 6666666655554433211 1222222222222
Q ss_pred --------------------hcCChHHHHHHHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004324 344 --------------------KEGDVEDAEKTWLRLLES-DN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398 (761)
Q Consensus 344 --------------------~~g~~~~a~~~~~~m~~~-g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 398 (761)
..|+..+-..++.+..+. ++ ..-...|..+.+.|-..|+++.|..+|++..+-..
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 223333344444444332 11 01124567777888888888888888887766432
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 399 SAS---VPAYHKIIELLCKAEETELTESLMKEFVETGM----------KP-------LMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 399 ~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------d~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+-- ..+|-.-...=.++.+++.|+++++.....-- .| ....|...++.--..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 211 12233333333455667777777665543111 11 12344555555566678888888
Q ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHh---CCCHHHHHHHHHH
Q 004324 459 AFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLS---SGDFVKAEKIYDL 532 (761)
Q Consensus 459 ~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~ 532 (761)
+++.+.+ -..|-.+. ...--+-.+..++++.+++++-+..- -.|++ ..|++.+.-+.+ .-..+.|..+|++
T Consensus 499 vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888876 33333221 11222334556888888888766653 23454 467776665553 3468999999999
Q ss_pred HHHcCCcc
Q 004324 533 MCLKKYEI 540 (761)
Q Consensus 533 m~~~g~~~ 540 (761)
.++ |..|
T Consensus 576 aL~-~Cpp 582 (835)
T KOG2047|consen 576 ALD-GCPP 582 (835)
T ss_pred HHh-cCCH
Confidence 996 6553
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=0.00044 Score=75.44 Aligned_cols=364 Identities=9% Similarity=-0.046 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC
Q 004324 211 RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (761)
Q Consensus 211 ~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 290 (761)
+.-|...|..+--++. +.|+++.+-+.|++... +..-....|+.+-..+... |.-..|..+++.-....
T Consensus 319 ~qnd~ai~d~Lt~al~---~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saa------g~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS---RCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAA------GSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHh------ccchHHHHHHHhhcccc
Confidence 4446777777777777 68899999999988775 3444455565555444443 46677888887765544
Q ss_pred CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHH
Q 004324 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA--GF--EEGKEVLLSVLRVCAK-----------EGDVEDAEKTW 355 (761)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--g~--~p~~~~~~~ll~~~~~-----------~g~~~~a~~~~ 355 (761)
..|+..+.-.++.--+..+.+..++++.+-.+.... |. ......|..+--+|.. .....++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 344433333333333344556666666665555441 11 1123444444444442 22245667777
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 004324 356 LRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-GM 433 (761)
Q Consensus 356 ~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 433 (761)
++..+.+.. |++..|-+ --|+-.++++.|++..++..+-+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 777776543 44444433 356777889999999998887766668888988888888899999999988877652 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------C-------CCCCHHHHHHHHHHHHhc
Q 004324 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----------------------K-------CRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----------------------~-------~~p~~~~~~~li~~~~~~ 484 (761)
. ......=++.=...++.+++......+.. + ......++.-+..-..
T Consensus 546 N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-- 621 (799)
T KOG4162|consen 546 N--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-- 621 (799)
T ss_pred h--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--
Confidence 1 00000001111112233333222222211 0 0111223322222222
Q ss_pred CCHHHHHHHHHHhhhCCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhh
Q 004324 485 GNIEKAEEIFNHMHSDQTIG--VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~ 556 (761)
-+.+.+..-.. |...- +. |+ ...|......+.+.+..++|...+.+... +.|-.
T Consensus 622 ~~~~~~~se~~-Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~------------ 683 (799)
T KOG4162|consen 622 SQLKSAGSELK-LPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLS------------ 683 (799)
T ss_pred hhhhhcccccc-cCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhh------------
Confidence 11111110000 22111 11 23 34677888889999999999988888874 33322
Q ss_pred hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
...|.-....+-..|..++|.+.+. +.++|+++.....++.++.+.|+-.-|.
T Consensus 684 ----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 684 ----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred ----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 3333333334566789999999988 9999999999999999999999654444
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.0006 Score=82.62 Aligned_cols=338 Identities=9% Similarity=-0.041 Sum_probs=206.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-C----CCCHH-HHHHHHHH
Q 004324 190 MGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-Y----QPRPS-LHNSLFRA 263 (761)
Q Consensus 190 ~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~----~p~~~-t~~~ll~~ 263 (761)
+...|+++.+..+++.++......+..........+. ..|++++|..++.+...... . .|... ....++..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~---~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ---SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH---HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 4456777777777776643211111111122222233 47999999999988765310 0 11111 11122222
Q ss_pred HHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCC---CC--CHHHHH
Q 004324 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK--DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF---EE--GKEVLL 336 (761)
Q Consensus 264 ~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~---~p--~~~~~~ 336 (761)
..... |++++|...+++....-...+. ...........+...|++++|...+++.....- .+ -..++.
T Consensus 461 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 461 VAIND-----GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHhC-----CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 22222 5999999999988763222222 112223344567788999999999988764311 11 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER--LGSA--SVPAY 405 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~ 405 (761)
.+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6667788999999999998876552 221 1 2234455666777889999999999887542 1112 23345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETG--MKPLMP--S-Y-INLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYG 475 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~--t-~-~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~ 475 (761)
..+...+...|+.++|.+.+....... ...... . . ...+..+...|+.+.|..++........... ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 556667888999999999998886521 111111 1 1 1123445568899999999877654111111 1245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..++...|+.++|..++++.... | ..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677888999999999999987653 2 2222 346667778889999999999999999864
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=0.00013 Score=68.32 Aligned_cols=197 Identities=17% Similarity=0.102 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
..-|--.|...|+...|.+-+++.++.++. +..+|..+...|-+.|..+.|.+-|++..+.. +-+-...|.--.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344556777888888888888888887654 56677888888888888888888888776542 1234445555666788
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|...|.+.++..+-...+.-.+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 888888888888877742222 2457777777777888888888888888775556666777788888888999999988
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++.....+ .++..+.-..|.--...|+.+.|-++=..+..
T Consensus 196 ~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888876 47888888888888888888888777776663
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00019 Score=69.28 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=93.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
..+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+. |.. ....||.-+.. .+.|+.+.|+
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHH
Confidence 3444444444444433221 2233333333334566666666666655554 333 34455544333 3345566666
Q ss_pred HHHHHHHHcCCC-------------CCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHH
Q 004324 388 EIFREMQERLGS-------------ASV---------------PAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMP 438 (761)
Q Consensus 388 ~~~~~m~~~g~~-------------p~~---------------~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ 438 (761)
+...++.++|++ ||+ ..+|.-...+.+.|+.+.|.+-+-.|.- ..-..|.+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 666666555542 111 1223333334566777777777766643 22344566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
|...+.-+=. .+++.+..+-+.-+....+-...||..++-.||+..-++-|-.++-+=
T Consensus 279 TLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 279 TLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 6654432211 233444444444444423344677888888888888888887777553
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=0.00026 Score=81.67 Aligned_cols=227 Identities=14% Similarity=0.193 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQA-GFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 372 (761)
.+.|+-.|......++.++|.++.++.... ++.- -.-.|.++++.-..-|.-+...++|+++.+-.- .-.+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHH
Confidence 344444445566777888888888877653 1111 123566666666667777778888888877531 2456778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~ 449 (761)
|...|.+.++.++|-++|+.|.++ ..-....|...+..+.++.+-+.|.+++.+.++. -|- .....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 888888888888888888888765 3345667888888888888888888888887763 232 3344455556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~~~li~~~~~~g~~~~A~ 527 (761)
.|+.+.++.+|+..+...+.-...|+.+|++=.++|..+.+..+|++....+ +.|-. ..|.-.+.-=.++|+-+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7888888888888887667777888888888888888888888888888877 55532 34555555445556544443
Q ss_pred HH
Q 004324 528 KI 529 (761)
Q Consensus 528 ~~ 529 (761)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0038 Score=62.01 Aligned_cols=419 Identities=12% Similarity=0.026 Sum_probs=238.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|..+++.-...+ -.-...+---+..++...|++++|..++.-+.+..-. +...|-.|..++. -.|.+.
T Consensus 34 s~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~-~~el~vnLAcc~F---yLg~Y~ 108 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA-PAELGVNLACCKF---YLGQYI 108 (557)
T ss_pred hcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC-CcccchhHHHHHH---HHHHHH
Confidence 4567888888888776554 1212233344567778999999999999988876544 4445544544444 268888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
+|..+-... |+....+-++-.++...+ +-++-..+...+...- -.-+.++......-.+.+
T Consensus 109 eA~~~~~ka-------~k~pL~~RLlfhlahkln-----dEk~~~~fh~~LqD~~-------EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 109 EAKSIAEKA-------PKTPLCIRLLFHLAHKLN-----DEKRILTFHSSLQDTL-------EDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHhhC-------CCChHHHHHHHHHHHHhC-----cHHHHHHHHHHHhhhH-------HHHHhHHHHHHHHHHHHH
Confidence 887765433 555566666666665442 5555555555553211 111111111111224789
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCh---------
Q 004324 316 ISLLKKEMQQAGFEEGKEVLLS-VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI--GEF--------- 383 (761)
Q Consensus 316 a~~l~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~--------- 383 (761)
|++++.+.... .|+-...|. +.-+|.+..-++-+.+++.--.+.-+. +...-|.......+. |+.
T Consensus 170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999988764 345555553 344667888888888888766554322 333444332222221 222
Q ss_pred ------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 384 ------------------------MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 384 ------------------------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
+.|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.- ..|-...
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 2233322222211 11 1222344457788889888887766432 2233333
Q ss_pred HHHHHHHH-----HhcCCHHHHHHHHHHHHh-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 440 YINLTNMY-----LNLGMHDRLHLAFSECLE-KCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 440 ~~~li~~~-----~~~g~~~~a~~~~~~m~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
.-.++.+- .....+.-|.+.|.-.-+ +.. ..+.--.++.+.+.-..++++.+-+++....- +..|..---.
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLN 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhH
Confidence 33333221 112235556666655443 222 22233455666666667788888888877664 2233333335
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhh-hhhhhhH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC-IESDEKR 591 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~ 591 (761)
+..+++..|.+.+|+++|-++. | |++ .|..+|.++|.-|- +.+..+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is--~----~~i--------------------------kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRIS--G----PEI--------------------------KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhc--C----hhh--------------------------hhhHHHHHHHHHHHHhcCCchH
Confidence 6788999999999999998775 2 221 14677888777665 4567788
Q ss_pred HHHHHH-hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceee
Q 004324 592 KRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAY 651 (761)
Q Consensus 592 a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty 651 (761)
|..++- .....+.-+..-++++.|.+++.+--|.+. |+.+.. +.|+.-.|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKA--------Fd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKA--------FDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHc--cCCCcccc
Confidence 888765 333223334455678888888876665553 554433 45555555
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00086 Score=62.93 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=165.8
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 381 (761)
+..+|...|+...|..-+++..+. .| +..++..+...|-+.|..+.|.+-|+...+..+. +..+.|..-..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 347888999999999999998876 34 4567888999999999999999999999988765 6678888899999999
Q ss_pred ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 460 (761)
++++|...|++....- ..--..||..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|+.-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887651 11124577777777888999999999999998854 223567778888899999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+....+..++..+.-..|..-.+.|+.+.|-++=..+... -|...-|-.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~ 245 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT 245 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence 9988755689998888899999999999988887777765 255554433
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.0031 Score=69.12 Aligned_cols=318 Identities=12% Similarity=0.072 Sum_probs=194.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--------CCCHHHHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR--------VPSEMTFHILIV 223 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~pd~~~~~~li~ 223 (761)
.+...|+.+.|.+-.+.+. +..+|..+..++.+..+++-|.-.+-.|... |. .|+.. .+-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHH
Confidence 4557888898887766654 3468899999999999999888777777542 11 23221 22222
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004324 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303 (761)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 303 (761)
+++- +.|.+++|+.+|++-++. -|++-+.... |.+++|.++-+.=-.-.+. .||....
T Consensus 808 vLAi--eLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~-----g~w~eA~eiAE~~DRiHLr---~Tyy~yA- 865 (1416)
T KOG3617|consen 808 VLAI--ELGMLEEALILYRQCKRY-----------DLLNKLYQSQ-----GMWSEAFEIAETKDRIHLR---NTYYNYA- 865 (1416)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHH-----------HHHHHHHHhc-----ccHHHHHHHHhhccceehh---hhHHHHH-
Confidence 3332 579999999999998874 2455555554 5899998886643322222 3333322
Q ss_pred HHhhccCCCHHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 004324 304 LHSYQDNIDKERISLLKKEM----------QQAG---------FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m----------~~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 364 (761)
.-+...+|.+.|++.|++- .... -..|...|.-.-.-+-..|+++.|..++....
T Consensus 866 -~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 866 -KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred -HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 3334456778887777632 2111 01133344444444456778888887776543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 444 (761)
-|-+++...|-.|+.++|-++-++-. |....-.|...|-..|++.+|...|-+.+. |...|
T Consensus 940 ----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 940 ----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 36677888888888888888766532 556666788888888888888888877543 33334
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------hhhCC
Q 004324 445 NMYLNLG---------------MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH--------MHSDQ 501 (761)
Q Consensus 445 ~~~~~~g---------------~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~g 501 (761)
+.|-..+ +.-.|-++|++.- .-..--+..|-++|.+.+|+++--+ ++.+.
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 3332222 2223333343321 0112335567888888888776321 12222
Q ss_pred CCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 502 TIG--VNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 502 ~~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+. .|....+--..-++.+.++++|..++-..+
T Consensus 1074 -Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1074 -LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 255666666677778888888888877664
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.32 E-value=1e-05 Score=82.13 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=134.7
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
-+.-.|.+..++.-.+ .....-..+.....-+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3344566777765444 221111113444567778889999877544 3444433 5666655444433333244455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSASVPAYHK-IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
++.-+++.......++..++.. ....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544433333323333332 224556679999999888642 456777888999999999999999999998
Q ss_pred hCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYG---IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+. ..|....+ +.+..+.-.+.+.+|..+|+++.++ .+++..+.+.+..++...|++++|.+++.+..+
T Consensus 159 ~~-~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 159 QI-DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred hc-CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 63 33433222 2233333344799999999999887 578999999999999999999999999999874
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.0073 Score=63.56 Aligned_cols=409 Identities=14% Similarity=0.176 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004324 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (761)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t 256 (761)
+.|..+|+.||.-+... .++++++.+++|...- .-....|..-|.+-. +..+++.+..+|.+.... .-+...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El---~skdfe~VEkLF~RCLvk---vLnlDL 88 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIEREL---ASKDFESVEKLFSRCLVK---VLNLDL 88 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH---HhhHhH
Confidence 66888999999887655 8999999999988752 225567888888888 688999999999988764 244556
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHH-HHHcCCCcCH-HHHHHHHH-HHh------hccCCCHHHHHHHHHHHHHcC
Q 004324 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHN-LLTSGLEIQK-DIYSGLIW-LHS------YQDNIDKERISLLKKEMQQAG 327 (761)
Q Consensus 257 ~~~ll~~~~~~~g~~~~g~~~~A~~~~~~-m~~~~~~p~~-~~~~~li~-~~~------~~~~g~~~~a~~l~~~m~~~g 327 (761)
|..-|+-.-+..+... |.-....+-|+- +.+.|..+-. .+++-.+. +.+ +..+.+.+.+.++++++...-
T Consensus 89 W~lYl~YVR~~~~~~~-~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLF-GYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHccCcc-hHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 6666654443332211 211122222222 3344433211 11121111 011 223334566666676665432
Q ss_pred CCC------CHHHHHHHHHHH-------HhcCChHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHHH
Q 004324 328 FEE------GKEVLLSVLRVC-------AKEGDVEDAEKTWLRLLE--SDNGIPTP---------------AFVYKMEAY 377 (761)
Q Consensus 328 ~~p------~~~~~~~ll~~~-------~~~g~~~~a~~~~~~m~~--~g~~~~~~---------------~~~~li~~~ 377 (761)
+.- |-..|-.=|+.. -+...+-.|+++++++.. .|+..... .|-.+|.-=
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 211 111111111111 123345556666666543 23221111 132222211
Q ss_pred HHcCC------h--HHHHHHHHH-HHHcCCCCCHHHH-HHHH----HHHHhcCC-------HHHHHHHHHHHHHcCCCCC
Q 004324 378 AKIGE------F--MKSLEIFRE-MQERLGSASVPAY-HKII----ELLCKAEE-------TELTESLMKEFVETGMKPL 436 (761)
Q Consensus 378 ~~~g~------~--~~A~~~~~~-m~~~g~~p~~~t~-~~li----~~~~~~g~-------~~~A~~l~~~m~~~g~~pd 436 (761)
-.++. . ....-++++ |.--+..|++.-. ..-+ +.+...|+ .+++..+++.....-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 11100 0 001111111 1122333332211 1111 11111221 4555666665555333334
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 437 MPSYINLTNMYLNLG---MHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 437 ~~t~~~li~~~~~~g---~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
..+|..+.+-=-..- ..+.....+++++. ...| ..+|-.+++.-.+..-++.|..+|.+..+.+..+-++..++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 444444433211111 24445555555544 2222 34556666666666666667777776666662222556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh-hhh-----hhhcccccCCCchhhHHhHHHHHhhhhhh
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS-LNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCI 585 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~-l~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 585 (761)
+++.-||. ++.+-|.++|+.=+. .++-+|.....+...+. ++. .++++.....++++...-+|..+|.--..
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLk-kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLK-KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 66665553 455666666666552 45555555444444332 211 22222222244555557889999988888
Q ss_pred hhhhhHHHHHHH
Q 004324 586 ESDEKRKRHMIR 597 (761)
Q Consensus 586 ~g~~~~a~~~~~ 597 (761)
-|++..+..+-+
T Consensus 485 vGdL~si~~lek 496 (656)
T KOG1914|consen 485 VGDLNSILKLEK 496 (656)
T ss_pred cccHHHHHHHHH
Confidence 999998887766
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00024 Score=81.84 Aligned_cols=205 Identities=11% Similarity=0.148 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAY 405 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 405 (761)
+...|-.-|.-....+++++|+++.++.+.. +++- -...|.++++.-..-|.-+...++|++..+. -| ...|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3566778888889999999999999998865 2221 1346888888888888889999999999876 24 4558
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHh
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKN 483 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~ 483 (761)
..|...|.+.+..++|-++++.|.+.- .-....|...++.+.+...-+.|..++.+.++-.+. .+..-.-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999852 245678999999999999999999999998874433 44455556677778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+|+.+.+..+|+...... +--...|+..|+.=.++|+.+.+..+|++.+..++.|.
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 999999999999998873 45677999999999999999999999999998776554
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0066 Score=68.17 Aligned_cols=258 Identities=10% Similarity=0.059 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
+++|..+|+... .+....+.||. ..+.++.|.+.-++.. ...+|+.+..+-.+.|.+.+|.+-|-+
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 455555554321 23333344433 3344555544433322 346788888888888888888877643
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
. -|...|.-+|....+.|.+++-.+.+...++..-.|.+. +.||-+|++.+++.+..++. .-||..
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi------~gpN~A 1195 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI------AGPNVA 1195 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh------cCCCch
Confidence 3 266778888888888888888888887777766666544 46788888888877766544 357777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
....+.+-|...|.++.|.-+|.. +.-|..|...+...|.+..|...-++.- +..++...+.+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFAC 1259 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHH
Confidence 777777778777877777766643 3346666666677777777766555442 222333222211
Q ss_pred hhhhh--hhc-ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 553 SLNRK--EVK-KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 553 ~l~~~--~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
.-+++ +.. ..+..-. ..--.--|+.-|...|-+++-..+++ ++++-.+.+.|.-|+.+|++.
T Consensus 1260 vd~~EFrlAQiCGL~iiv----hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1260 VDKEEFRLAQICGLNIIV----HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hchhhhhHHHhcCceEEE----ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11110 000 0000000 02223446777888888888888888 777777777888888888874
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.29 E-value=0.0035 Score=75.97 Aligned_cols=261 Identities=12% Similarity=0.001 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHHcCC------CcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGL------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCA 343 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~ 343 (761)
|++++|...+......-- .+....-........+...|++++|...+++....--..+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 488999888887754311 11111111222335566789999999999987663111122 23455666778
Q ss_pred hcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHH
Q 004324 344 KEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGS--A-SVPAYHKIIEL 411 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~ 411 (761)
..|++++|...+++.... |.. ....++..+...+...|++++|...+++... .|.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887653 211 1123455567778889999999999887654 2221 1 22345555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHH-----HHHHHH
Q 004324 412 LCKAEETELTESLMKEFVET--GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIY-----GIYLES 480 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~--g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~-----~~li~~ 480 (761)
+...|++++|...+.+.... ...+ ...++..+...+...|+.+.|.+.+..... ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77889999999999887652 1122 234455566778889999999999988754 111111111 112345
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+...|+.+.|.+++....... ..... ..+..+..++...|++++|..++++...
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566899999999988765532 11111 1245667788899999999999998875
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0095 Score=63.46 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 576 IGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 576 ~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
|.-+...=.++|+.++|...++ ....|++....+.++..|++.
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 3333333446699999999998 788999999999999888863
No 99
>PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A.
Probab=98.28 E-value=3.4e-07 Score=85.99 Aligned_cols=86 Identities=34% Similarity=0.583 Sum_probs=60.7
Q ss_pred ccccCCcc-cchhhhhhccCccceeeeeeeCCc-c-cCCCcEEEEecc-CHHHHHHHHHHHh-hcCCceeEeecC--cEE
Q 004324 627 KFWPKGRL-VIPKLIHRWLTPRALAYWFMYGGH-R-TSVGDILLKLKV-SSEGIALVFKTLK-ARSLDCRVKKKG--RVF 699 (761)
Q Consensus 627 ~~~~~a~~-~~~~m~~~g~~Pd~~ty~~li~g~-~-~~~~~~~~~~~g-~~~e~~~l~~~m~-~~gl~~~~~~~~--~~~ 699 (761)
.|+.++.+ +++..+++.++|-+++||+|.||. . ..++....+|++ +.+|+..|.+.|. ++||++++++++ .+|
T Consensus 86 ~fY~~~~Kk~ip~~I~~~LTp~~LA~W~mdDG~~~~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~l~~~i~~~~~~~~y 165 (178)
T PF03161_consen 86 LFYPNGKKKIIPENIHDYLTPLALAYWFMDDGYSKSKKGRGIRLCTNSFTKEEVERLQNILKTKFGLKCSIHKHGKKNQY 165 (178)
T ss_dssp HHBSSSSB---TTHHHHH--HHHHHHHHHHHE-STT-S---EEE--TTS-HHHHHHHHHHHHHHH---EEEEEET--TEE
T ss_pred eeeeCCCcccChHHHHHhcCHHHhhheeecCCeeecCCCCcEEEEECCCCHHHHHHHHHHHHHHhCeEEEEEEcCCCceE
Confidence 45556665 999999999999999999999992 1 335555666666 9999999999995 679999999999 899
Q ss_pred EEEEeCCCHHHHH
Q 004324 700 WIGFLGSNSTLFW 712 (761)
Q Consensus 700 ~i~i~~~~~~~~~ 712 (761)
+|+|+++|.+.|+
T Consensus 166 ~i~i~~~s~~~f~ 178 (178)
T PF03161_consen 166 RIYIPAKSMDKFR 178 (178)
T ss_dssp EEEE-GGGHHHHH
T ss_pred EEEEeHHHHhhhC
Confidence 9999999999885
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.0004 Score=75.78 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=153.8
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCC-----
Q 004324 178 FDFALATKLAD--YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGY----- 250 (761)
Q Consensus 178 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~----- 250 (761)
-|..|.-++++ .|..-|+.+.|.+-.+-+.. ...|..|.+.|+ +..+++-|.-.+..|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV---kT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV---KTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh---hhccccHHHHhhhhhhhhhhHHHHHH
Confidence 36777777775 47788999999988877754 478999999999 788999888888888653221
Q ss_pred ---CCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC
Q 004324 251 ---QPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (761)
Q Consensus 251 ---~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (761)
.|+...-. ...++-.. |.+++|+.+|++-...+ ..| ..|...|.+++|.++-+.=-+-.
T Consensus 795 a~q~~~e~eak--vAvLAieL-----gMlEeA~~lYr~ckR~D------LlN-----KlyQs~g~w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 795 AQQNGEEDEAK--VAVLAIEL-----GMLEEALILYRQCKRYD------LLN-----KLYQSQGMWSEAFEIAETKDRIH 856 (1416)
T ss_pred HHhCCcchhhH--HHHHHHHH-----hhHHHHHHHHHHHHHHH------HHH-----HHHHhcccHHHHHHHHhhcccee
Confidence 23221111 11222222 58999999999876533 222 55778889999988865432222
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL----------LESDN---------GIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m----------~~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
+ ..||-.-..-+-..++++.|.+.|++. ....+ ..|...|.--..-+-..|+++.|+.
T Consensus 857 L---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 857 L---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred h---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 2 234444445555677788777777642 11111 0122233333333334567777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|...+ -|-+++...|-.|+.++|-++-++ .| |....-.|.+.|...|++.+|..+|.+..
T Consensus 934 ~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 934 FYSSAK---------DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhh---------hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 766443 255677777778888888776544 22 56666778888888888888888777643
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0094 Score=63.49 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHh-CCCCCHHHHHHHHHHHHhcCCHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS--------ECLE-KCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~--------~m~~-~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
...|.+++...-+..-.-...+.-.++......|+++.|.+++. .+.+ +..| .+..++...|.+.+.-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence 45555555554443211123444455555666666666666666 3333 3333 33344555555555555
Q ss_pred HHHHHHHHhhhCCC-CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQT-IGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~-~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-|..++.+....-. -.+. ..+|.-+...-.++|+-++|..+++++.+
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 55555544432100 0011 12233333333456666677777776664
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.02 Score=64.09 Aligned_cols=221 Identities=15% Similarity=0.138 Sum_probs=129.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|++..+.+.++.+-.+-..++.+|+ +.|.|+.++|..+++.....+.. |..|..++-..|. +.++.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~---d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR---DLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH---HHhhhh
Confidence 45677778877777777642222223333332 34778888888887777665544 7777777777777 678888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH----HHHHHHHHHHHcCCCcCHHHHHHHHH-HHhhccC
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ----QAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDN 310 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~----~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~ 310 (761)
+|..+|++..+ .-|+......+..++++. +.+. -|.+++... |...-|-|.+. +......
T Consensus 95 ~~~~~Ye~~~~---~~P~eell~~lFmayvR~------~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 95 EAVHLYERANQ---KYPSEELLYHLFMAYVRE------KSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHh---hCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhcc
Confidence 88888888775 347766666666677664 2333 344444432 22222222211 1111000
Q ss_pred --------CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 311 --------IDKERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTW-LRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 311 --------g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
--..-|.+.++.+.+.+ -.-+..-.-.-+..+...|++++|..++ ....+.-...+...-+--++.+.+.
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 01234555666665544 2112222223334455778888888888 3444444333455555678888888
Q ss_pred CChHHHHHHHHHHHHcC
Q 004324 381 GEFMKSLEIFREMQERL 397 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g 397 (761)
+++.+..++-.++..+|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 89888888888888775
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=0.00026 Score=70.46 Aligned_cols=186 Identities=13% Similarity=-0.003 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (761)
....+-.+...+.+.|++++|...++++.+..+. | ...++..+..+|.+.|++++|...|+++.+..-. |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566777788888899999999999888876542 1 1246677888888999999999999988765221 111 1344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 407 KIIELLCKA--------EETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 407 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
.+..++.+. |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....-.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH-------HHHHHHH
Confidence 444455443 66778888888887653 332 22211111100 000 00 0111245
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...|.+.|++++|...+++......-.| ....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678899999999999999887631112 356888999999999999999999998874
No 104
>PLN02789 farnesyltranstransferase
Probab=98.20 E-value=0.0017 Score=66.89 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-ChHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEG-DVEDAE 352 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g-~~~~a~ 352 (761)
++.+|...|+.+... .+..++|+.+..++.+. .|+. .+|+.--.++.+.| +++++.
T Consensus 35 ~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 35 EFREAMDYFRAVYAS--------------------DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHH
Confidence 667777777666543 33467788888877764 3433 34555445555666 578999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEF--MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
..++.+.+..++ +..+|+..-..+.+.|+. ++++.+++++.+..- -|..+|+...-++...|++++|++.++++++
T Consensus 93 ~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999998888765 556777665556666653 678888888887643 3778888888888888999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh
Q 004324 431 TGMKPLMPSYINLTNMYLNL---GM----HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----GNIEKAEEIFNHMHS 499 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 499 (761)
.... |..+|+.....+.+. |. .+.......+++...+-|...|+-+...|... ++..+|.+.+.+...
T Consensus 171 ~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 171 EDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7633 455666555555444 22 24566666677666678889999998888873 445678888888776
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC------------------CHHHHHHHHHHH
Q 004324 500 DQTIGVNTRSCNIILSAYLSSG------------------DFVKAEKIYDLM 533 (761)
Q Consensus 500 ~g~~~p~~~t~~~li~~~~~~g------------------~~~~A~~~~~~m 533 (761)
.+ +.+......|+..|+... ..++|.++++.+
T Consensus 250 ~~--~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 250 KD--SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cc--CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 54 346778888888888643 235677777777
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00018 Score=75.96 Aligned_cols=221 Identities=15% Similarity=0.062 Sum_probs=161.2
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
+.+.|++.+|.-.|+..++.... +...|--|-..-+..++-..|+..+.+..+..+. +..+.-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 45778888888888887776322 4667777777777888888888888888887754 677888888889999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 387 LEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLH 457 (761)
Q Consensus 387 ~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~a~ 457 (761)
++.|+.-.....+ ++...-+. +.+.....+....++|-++.. .+..+|...+..|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998887553210 00000000 111122223344555555544 555577778888888888889999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..|+..+..-+-|...||-|...++...+.++|..-|++..+ ++|+- .++..|.-+|...|.+++|.+.|-..+
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998876577888999999999999999999999999888 45764 466777778899999999988877665
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.0072 Score=63.71 Aligned_cols=364 Identities=14% Similarity=0.087 Sum_probs=208.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQ 231 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~~~~~li~~~~~~~~~ 231 (761)
+....|+++.|...|...+... ++|.+.|+--..+|++.|++.+|++=-.+-.+ +.|+ .-.|+..-.++. -.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~---~l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF---GL 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH---hc
Confidence 3447899999999999999886 67999999999999999999999876655554 4565 356888888877 58
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH----HcCCCcCHHHHHHHHH---
Q 004324 232 GCLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL----TSGLEIQKDIYSGLIW--- 303 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~--- 303 (761)
|++++|+.-|.+-.+. .|+ ...++-+..+...... .++.-..-.++..+. ......+. .|..++.
T Consensus 84 g~~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~-~~~~~l~~~~ 156 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDP-AYVKILEIIQ 156 (539)
T ss_pred ccHHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccH-HHHHHHHHhh
Confidence 9999999999998874 354 3444444444411000 000000000000000 00000000 0000000
Q ss_pred -----HHhhccCCCHHHHHHHHH-----HHHHcCC-------CC------------C----------HHHHHHHHHHHHh
Q 004324 304 -----LHSYQDNIDKERISLLKK-----EMQQAGF-------EE------------G----------KEVLLSVLRVCAK 344 (761)
Q Consensus 304 -----~~~~~~~g~~~~a~~l~~-----~m~~~g~-------~p------------~----------~~~~~~ll~~~~~ 344 (761)
+..+.+......+...+. .+...|. .| | ..-..-+.++.-+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 011111001111111110 0000010 11 1 1123456666667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCC
Q 004324 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK-------IIELLCKAEE 417 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------li~~~~~~g~ 417 (761)
..+++.|.+-+....+.. -+..-++..-.+|...|...++...-..-.+.|-. ...-|+. +-.+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 777777777777776665 24445555666677777666655555544443321 1112222 2234555666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYI-------------------------NLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
.+.|...|.+.......||..+-. .=...+.+.|++..|.+.+.++++..+-|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 777777777766544444432211 1134566778888888888888876677888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....+|++|.+.|++-++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888877777764 33334444444445555677888888877765
No 107
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.00092 Score=68.93 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=129.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
..+.+.++.++|+.+..++.+. .| +..+|+.--..+...| .+++++..++++.+.. .-+..+|+.....+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3334445566666666666553 12 2233444444444445 4566666666666643 2233445544444444454
Q ss_pred --HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC---CH----
Q 004324 453 --HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---DF---- 523 (761)
Q Consensus 453 --~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g---~~---- 523 (761)
.+++..+++.+.+.-+.|..+|+...-.+.+.|++++|++.++++++.+ +-|...|+.....+.+.| ..
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccH
Confidence 2566777777777667888999999888889999999999999999876 346777877766665542 22
Q ss_pred HHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh----hhhhHHHHHHH--
Q 004324 524 VKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----SDEKRKRHMIR-- 597 (761)
Q Consensus 524 ~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~-- 597 (761)
++++++..++++ .+|+ |...|+.+.+.+... +...++.....
T Consensus 200 e~el~y~~~aI~----~~P~----------------------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 200 DSELKYTIDAIL----ANPR----------------------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHHHHH----hCCC----------------------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 345555555553 2332 367777777766653 23344655555
Q ss_pred hhccccchhhHHHHHHHHHh
Q 004324 598 FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~ 617 (761)
+..+|.++.+...|+++|+.
T Consensus 248 ~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hcccCCcHHHHHHHHHHHHh
Confidence 56678888888899999985
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.0015 Score=70.37 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=108.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (761)
|.+......|.+|..+++.+...... ..-|.-+.+.|+..|+++.|.++|.+- ..++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 34455667777777777766665432 234566677777788888888777643 1244567777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 419 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+.|.++-.+. .|-......|.+-..-.-+.|++.+|.+++-.+- .|+. -|.+|-+.|..+..+++.++-.
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 8777765443 2333344555555555667777777777665543 4543 3677778887777777766543
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 499 ~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..- -..|...+..-|-..|+..+|+.-|-+..
T Consensus 878 ~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 221 23455666677777788887777766554
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.029 Score=63.28 Aligned_cols=334 Identities=14% Similarity=0.082 Sum_probs=164.5
Q ss_pred CcchhhhhHHHhccCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 144 QEDGTYLAVHCMRIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 144 p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
|+.++.+.-+....+-+.+-.++++.++-.. .+.-+...-|.||-.-.|. +.....++.+++...+. |++. +
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~ia--~--- 1056 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PDIA--E--- 1056 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hhHH--H---
Confidence 4444444445555555555555555554322 1222233333333222222 23334444444443321 1211 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (761)
... .++-+++|..+|++.. .+....+.+|... +.++.|.+.-++.. .+.+++.+.
T Consensus 1057 -iai---~~~LyEEAF~ifkkf~------~n~~A~~VLie~i---------~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1057 -IAI---ENQLYEEAFAIFKKFD------MNVSAIQVLIENI---------GSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred -HHh---hhhHHHHHHHHHHHhc------ccHHHHHHHHHHh---------hhHHHHHHHHHhhC------ChHHHHHHH
Confidence 111 2444566666665431 3334444444332 24455544444332 234444444
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
.+..+.|...+|.+-|-+. -|...|.-++..+.+.|.+++-.+.+....++.-+|.+ =+.||-+|++.++
T Consensus 1112 --kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1112 --KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred --HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 4445555555555544321 25556666666666677766666666555554444433 2456666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+.+-.++. .-||+.-...+-.-|...|.++.|.-++... .-|.-|...+...|.+..|...-++
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 65554443 1255555556666666666666665555432 2344455555555555555443332
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 542 (761)
..+..||.-+-.+|...+.+.-| +|...+ +-....-..-++.-|-..|.++|-+.+++. |.+...
T Consensus 1246 -----Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl~Ea----~LGLER 1310 (1666)
T KOG0985|consen 1246 -----ANSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISLLEA----GLGLER 1310 (1666)
T ss_pred -----ccchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHHHHh----hhchhH
Confidence 34556666666666655544333 343333 333444556677777777777777766654 445555
Q ss_pred HHHHHHHH
Q 004324 543 AWMEKLDY 550 (761)
Q Consensus 543 ~~~~~~~~ 550 (761)
..+..+.+
T Consensus 1311 AHMgmfTE 1318 (1666)
T KOG0985|consen 1311 AHMGMFTE 1318 (1666)
T ss_pred HHHHHHHH
Confidence 54444433
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.10 E-value=0.00055 Score=68.14 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=127.7
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 004324 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVY 372 (761)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ 372 (761)
..+..+..+...|+++.|...|++..... |+ ..++..+..++.+.|++++|...++.+.+..+.... .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444577888999999999999987753 33 246677888999999999999999999987654222 24455
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 373 KMEAYAKI--------GEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 373 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
+...|.+. |+.++|.+.|+.+... .|+. ..+..+.... . .... .. .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~~------~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRNR------LA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHHH------HH--------HHHHHH
Confidence 55556554 7889999999999876 2443 2332222111 0 0000 00 112256
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKC---RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
...|.+.|+.++|...+....+.. +.....+..+...|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667899999999999999988632 334678999999999999999999999988775
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00075 Score=65.28 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=126.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
..+++..++.+.++....| +..+.+.......+.|+.++|++-|....+- |.. ....||..+.- .+.|+.+.|+
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHH
Confidence 5788888888888876544 4455555556677899999999999987764 555 46788877654 4668999999
Q ss_pred HHHHHHHHcCCCC-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHH
Q 004324 423 SLMKEFVETGMKP-------------LM---------------PSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRT 472 (761)
Q Consensus 423 ~l~~~m~~~g~~p-------------d~---------------~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~ 472 (761)
++..+++++|++- |+ ..+|.-...+.+.++.+.|.+.+-.|.- .-..|++
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 9999999988652 21 1223333346677899999999998863 3455666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
|...+.-.=+ .|++.+..+-+.-+...+.+ -..||..++-.||++.-++-|..++-+
T Consensus 279 TLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 279 TLHNQALMNM-DARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHHhcc-cCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6655433222 24454444445555554423 457999999999999999999888765
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00094 Score=63.99 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL-KNAGN--IEKAE 491 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~-~~~g~--~~~A~ 491 (761)
.++.+++...++...+.. +.|...|..|...|...|++++|...|++..+..+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555555433 345556666666666666666666666666654455666666666643 45555 36677
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777766654 33556666666666677777777777777664
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00018 Score=75.91 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=167.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (761)
Q Consensus 342 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (761)
+.+.|++.+|.-.|+..++.++. +...|--|-......++-..|+..+++..+.. +-|....-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45789999999999999998865 78899999999999999999999999888752 22566677888889999999999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 422 ESLMKEFVETGMK-----P---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 422 ~~l~~~m~~~g~~-----p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+..++..+....+ + +...-.. ..+.....+....++|-++.. +..+|..++..|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998764311 0 1000000 122223345667777877775 45589999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
..|+...... +-|...||-|-..++...+.++|+..|++.++ +.|..
T Consensus 451 Dcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~y--------------------------- 497 (579)
T KOG1125|consen 451 DCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGY--------------------------- 497 (579)
T ss_pred HHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCe---------------------------
Confidence 9999999864 45678999999999999999999999999985 34432
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHH
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMI 596 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~ 596 (761)
+.++..|.-.|...|.+++|...+
T Consensus 498 -VR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 498 -VRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred -eeeehhhhhhhhhhhhHHHHHHHH
Confidence 344455666788888888877554
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=6.3e-06 Score=54.03 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 115
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=7.8e-06 Score=53.56 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (761)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.0002 Score=77.60 Aligned_cols=210 Identities=12% Similarity=0.080 Sum_probs=165.5
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..+.+.|-...|..+|++. ..|.-+|-+|+..|+..+|..+...-.++ +||...|..+.+.....--++
T Consensus 406 ell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 3345566677777777753 45677889999999999999998888873 468888999988888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|.++++....+ +-..+-.-..+.++++++.+.|+.-.+.. .--..+|-.+..+..+.+++..|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 999999876443 11111122234788999999998877643 2245688888888889999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+-+-+...||.+-.+|.+.|+-.+|...+.+..+-+ . -+...|...+....+.|.+++|++.+++|..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-Y-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-C-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8777788999999999999999999999999998865 2 3455677777778899999999999999875
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.03 E-value=0.0011 Score=63.60 Aligned_cols=127 Identities=8% Similarity=0.026 Sum_probs=86.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGM--HDRL 456 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~--~~~a 456 (761)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. .-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655542 3466677777777777777777777777777743 2355666666665 355565 4778
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
.+++++..+..+.+..++..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHH
Confidence 888877777556677788888888888888888888888887763 5555433
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.97 E-value=0.0002 Score=64.78 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+...+...|++++|...|+...... +.+...|..+...+.+.|++++|+..|++..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555554432 2344455555555555555555555555554
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.3e-05 Score=52.06 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (761)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0036 Score=72.07 Aligned_cols=220 Identities=18% Similarity=0.190 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
+...|-.|+..+- +.+++++|.++.+.-.+ ..|+...+-.....+.... ++..++..+ .+.
T Consensus 30 n~~a~~~Li~~~~---~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~-----~~~~~~~lv--~~l------ 90 (906)
T PRK14720 30 KFKELDDLIDAYK---SENLTDEAKDICEEHLK---EHKKSISALYISGILSLSR-----RPLNDSNLL--NLI------ 90 (906)
T ss_pred hHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhh-----cchhhhhhh--hhh------
Confidence 5567788888886 57888888888886665 3465554444443333222 233333333 111
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 373 (761)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|.++++++.+..+. |..+.|.+
T Consensus 91 -----------~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~ 156 (906)
T PRK14720 91 -----------DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKL 156 (906)
T ss_pred -----------hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHH
Confidence 22233334444444445555432 24457777888888888888888888888887743 67778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG-------------------MK 434 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~ 434 (761)
...|+.. ++++|.+++.+.... +...+++.++.+++.++.... ..
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc
Confidence 8888888 888888877766554 444445555555555555532 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 435 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
--+.++-.|-..|-+..+++++..++..+++--+.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 122333333444444555555555555555433344444444444444
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0023 Score=61.45 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=122.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
..+-..|...|+-+.+..+....... .+-|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44556667777777777777665433 22344555667888888888888888888887754 67888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
|++++|..-|.+..+-..-+...+|.|.-.|.-.|+++.|..++......+ .-|...-..+.......|++.+|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888888887556667788888888888899999999998888765 336777777777888889999888876
Q ss_pred HHHH
Q 004324 531 DLMC 534 (761)
Q Consensus 531 ~~m~ 534 (761)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.92 E-value=0.0022 Score=72.97 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
.++..+-.|.......|+.++|..+++...+. .|| ......+..++.+.+++++|+...++..... .-+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35677777777777788888888888877764 344 3456667777778888888888887777753 2234555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
..++.+.|++++|..+|+++....+-+..++..+...+-..|+.++|...|++..+. ..|...-|+.++. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHHH------HH
Confidence 666777788888888888877633444777777777788888888888888877765 3455666655543 23
Q ss_pred HHHHHHHHHHH
Q 004324 524 VKAEKIYDLMC 534 (761)
Q Consensus 524 ~~A~~~~~~m~ 534 (761)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 33445555554
No 123
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.6e-05 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (761)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998887
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.91 E-value=0.00097 Score=60.33 Aligned_cols=90 Identities=12% Similarity=-0.089 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+..+.+...+..+..++.+.|+++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444322 1233344444444444444444444444444333334444444444444444444
Q ss_pred HHHHHHHHhhh
Q 004324 489 KAEEIFNHMHS 499 (761)
Q Consensus 489 ~A~~l~~~m~~ 499 (761)
+|...|+....
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=0.023 Score=64.21 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
...|...+...++-+..+..+||.|.-. ...|++.-|...|-+-.... +-+..+|..+--.|.++.+++-|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHh
Confidence 4567777777777667888889888666 66678888888777766653 45778999888889999999999999999
Q ss_pred HHHcCCccChHHHH-HHHHHH---hhhh---h--hhc--ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHH-----
Q 004324 533 MCLKKYEIESAWME-KLDYVL---SLNR---K--EVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMI----- 596 (761)
Q Consensus 533 m~~~g~~~~~~~~~-~~~~~~---~l~~---~--~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----- 596 (761)
.+. ++|.-.. -+++++ ..|+ + .+. ..+.+.-..-++...|-.-.---...|+.++-....
T Consensus 876 ~qS----LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 876 VQS----LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hhh----cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 884 4554322 122221 2222 1 111 112222222222333322222223344444333222
Q ss_pred -----H--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 597 -----R--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 597 -----~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+ ++-.|+...+|.+.+.+....+.+.+|.+
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~e 988 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALE 988 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHH
Confidence 2 66678888899999999999988888876
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0036 Score=60.06 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.++.|++-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444333333333333456777777777777766521 23333333444566677778888888887743
Q ss_pred CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 434 KPLMPSYINLTNMYLNL----GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
+..|.+-|..++.+. +.+.+|.-+|++|-++..|+..+.|-+..++...|++++|..++++...+. .-+..|
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH
Confidence 456666666665543 467788888888887788888888888888888888888888888888774 345666
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHcCCccChHHHHHHHH
Q 004324 510 CNIILSAYLSSGDFVK-AEKIYDLMCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~~~~ 550 (761)
...+|-.-...|...+ ..+.+.+++. ..|+...+.++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~~e 283 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHLNE 283 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 6666666666666544 4456666653 3355554454443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0075 Score=68.77 Aligned_cols=183 Identities=8% Similarity=0.038 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
..+...+-.|.....+.|++++|+.+++...+..+. +......+...+.+.+++++|+...++..... +-+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446888889999999999999999999999998754 56777889999999999999999999998863 2245567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
-.++.+.|++++|..+|++....+ .-+..++..+..++-+.|+.++|...|+...+...+....|+.++. ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 889999999999999999999843 3347899999999999999999999999999866777777777653 344
Q ss_pred HHHHHHHHhhhCCC---CCCCHHHHHHHHHHHHhC
Q 004324 489 KAEEIFNHMHSDQT---IGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 489 ~A~~l~~~m~~~g~---~~p~~~t~~~li~~~~~~ 520 (761)
.-..+++...-.+. .....++...+|.-|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 45566666654430 233455666677666654
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.0023 Score=69.58 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=161.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
++|--..--.+...+.+.|-...|..+|++. ..|--+|.+|+ ..|+..+|..+..+-.+. .||..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~---~lg~~~kaeei~~q~lek---~~d~~ 458 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYL---LLGQHGKAEEINRQELEK---DPDPR 458 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHH---HhcccchHHHHHHHHhcC---CCcch
Confidence 4555555667788899999999999999887 35778889999 689999999998888763 58888
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.|..+.+..-.. --+++|.++++....+.- +. ......+.++++++.+.|+.-.+.. ..-..+|
T Consensus 459 lyc~LGDv~~d~------s~yEkawElsn~~sarA~------r~---~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w 522 (777)
T KOG1128|consen 459 LYCLLGDVLHDP------SLYEKAWELSNYISARAQ------RS---LALLILSNKDFSEADKHLERSLEIN-PLQLGTW 522 (777)
T ss_pred hHHHhhhhccCh------HHHHHHHHHhhhhhHHHH------Hh---hccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence 888887776543 278888888887643310 00 0011233677888888887654432 1235677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
-..-.+..+.+++..|.+.|..-....+. +...||.+-.+|.+.|+-.+|...+.+..+... -+...|-.-+....+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDV 600 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhc
Confidence 77777777888888888888877766543 567888888888888888888888888877653 2444555556666788
Q ss_pred CCHHHHHHHHHHHHH
Q 004324 416 EETELTESLMKEFVE 430 (761)
Q Consensus 416 g~~~~A~~l~~~m~~ 430 (761)
|.+++|.+.+.++..
T Consensus 601 ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLD 615 (777)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888888888775
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=0.0057 Score=70.44 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..|+..|...+++++|.++.+...+..+. ....|-.+...|.+.++.++|..+ .+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 4566788999999999999999999977776543 233333333377777776666655 22 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
......++.....+...|.+.+ -+..++..|..+|-+.|+.++|..+++++++--+-|..+.|.+...|+.. ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2233333333333444444422 24457888999999999999999999999985578899999999999999 99999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchh
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSE 570 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (761)
++++.+.... |....++.++.++|.++.+. +|+-++.+....... .. .... .
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~----~~~d~d~f~~i~~ki---~~---~~~~--~ 220 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHY----NSDDFDFFLRIERKV---LG---HREF--T 220 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhc----CcccchHHHHHHHHH---Hh---hhcc--c
Confidence 9998887764 66777899999999999863 333222222211111 10 0000 0
Q ss_pred hHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccC
Q 004324 571 QRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 571 ~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~ 623 (761)
.-+.++--|-.-|....+++.+..+++ ++++|.+..+..-++..|. +++.+
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 114555556667778889999999999 8999998877777777776 44444
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=0.06 Score=61.00 Aligned_cols=183 Identities=8% Similarity=-0.024 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhh
Q 004324 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (761)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~ 275 (761)
...|...|=+-.+.... =...|..|-.-|+ ...+...|.+.|+...+.+ ..|..........+++.. .
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYr---d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~------~ 541 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYR---DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEES------T 541 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccc------c
Confidence 45555555444443211 1345777777776 4557777888888877642 234455666667777764 7
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004324 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (761)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 355 (761)
++.|..+.-..-+.. ..-....+|.-+.-.+-..++...|..-|+...+...+ |...|..+..+|.+.|++..|.++|
T Consensus 542 we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhh
Confidence 888888732222211 11234455555555667777888888888777664322 5667888888999999999999998
Q ss_pred HHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHH
Q 004324 356 LRLLESDNGIPTPAFVY--KMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
.+.....+. ..|.. ...+-|..|++.+|+..+.....
T Consensus 620 ~kAs~LrP~---s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 620 TKASLLRPL---SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHhcCcH---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887776532 23332 34456777888888888877653
No 131
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=2.7e-05 Score=49.36 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0053 Score=59.02 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...-..+-..|+-+....+......... -|....+..+....+.|++.+|...|++.... -++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4455566667777777766665443332 24555666788888888888888888888764 466888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (761)
|+.++|..-|.+..+-- .-+...+|.|.-.|.-.|+.+.|..++......-..|..+-..|.-.....|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888888888732 12345677777778888888888888888776555577777888888888888888888766
Q ss_pred Hhhh
Q 004324 496 HMHS 499 (761)
Q Consensus 496 ~m~~ 499 (761)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.001 Score=69.98 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+|+..+...++++.|..+|+++.+.. |+. ...|+..|...++-.+|.+++.+.++..+.+......-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444455566666666666666653 442 23355556566666667777666665555566666767777888888
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
++.|+++.+++.... +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888853 3344588888888888888888888888775
No 134
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.71 E-value=0.067 Score=53.32 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=167.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..|.+..|+.-|...++.. +.+-.++-.-...|...|+-..|+.=|+...+. +||-..- .+-++.+.. +.|.++
T Consensus 50 a~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A-RiQRg~vll-K~Gele 123 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA-RIQRGVVLL-KQGELE 123 (504)
T ss_pred HhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH-HHHhchhhh-hcccHH
Confidence 4566667776666666543 334444444455666777777777777777764 5664322 122222111 677888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
+|..=|+...+. .|+.-+ ...+..+.. ..++-..+.. .+..+...|+...
T Consensus 124 ~A~~DF~~vl~~---~~s~~~---~~eaqskl~------~~~e~~~l~~------------------ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 124 QAEADFDQVLQH---EPSNGL---VLEAQSKLA------LIQEHWVLVQ------------------QLKSASGSGDCQN 173 (504)
T ss_pred HHHHHHHHHHhc---CCCcch---hHHHHHHHH------hHHHHHHHHH------------------HHHHHhcCCchhh
Confidence 888888777764 354322 122222110 1111111111 1234455677777
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 316 ISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 316 a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
|+.....+.+- .| |...|..-..+|...|.+..|..=++...+..-. ++.+.--+-..+.+.|+.+.++...++..
T Consensus 174 ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 174 AIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777776653 33 4555666667777788887777766665554432 44555556667777788877777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C---CCC
Q 004324 395 ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-C---RPN 470 (761)
Q Consensus 395 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~---~p~ 470 (761)
+. .||-...-.. | ..+.+..+.++.|.+ ....+++.++.+..+...+. - ...
T Consensus 251 Kl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 53 3554321111 1 111222222222222 12233444444444444431 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+..+-.+|...|++.+|++...+..+.. +-|+.++.--..+|.-...++.|+.=|+...+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2233344455566667777777777666642 22356666666677777777777777777664
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.026 Score=59.16 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=107.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGM 452 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~ 452 (761)
--.+...|..++|+..++.+... .+-|..-+......+.+.++..+|.+.++.+... .|+ ......+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 33455678888888888887765 3335555566677888888888888888888874 455 5566677888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+.+|.++++......+-|...|..|..+|...|+..+|..-.-+ +|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHH
Confidence 88888888888877788888888888888888888777655433 35667888888888888
Q ss_pred HHHcC
Q 004324 533 MCLKK 537 (761)
Q Consensus 533 m~~~g 537 (761)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 87643
No 136
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=3.9e-05 Score=48.56 Aligned_cols=29 Identities=38% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (761)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.68 E-value=0.0034 Score=65.47 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=119.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETE 419 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 419 (761)
.+...|.+++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+... .|+ ...+-.+-.+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345789999999999998887543 6666777889999999999999999999875 455 555667788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+|..+++...... +-|...|..|..+|...|+..++..... .+|...|++++|...+....+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHH
Confidence 9999999888764 5678899999999999998888776544 456778999999999988887
Q ss_pred CCCCCCCHHHH
Q 004324 500 DQTIGVNTRSC 510 (761)
Q Consensus 500 ~g~~~p~~~t~ 510 (761)
. ++++..+|
T Consensus 454 ~--~~~~~~~~ 462 (484)
T COG4783 454 Q--VKLGFPDW 462 (484)
T ss_pred h--ccCCcHHH
Confidence 7 35565555
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.68 E-value=0.0011 Score=59.36 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
......+...+...|++++|.+.|+.+....+.+...|..+...|.+.|++++|..+|++....+ +.+..+|..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 34455666677777888888888877766455677778888888888888888888888777654 4456777777778
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|++++|...|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887775
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.014 Score=56.18 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=83.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004324 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398 (761)
Q Consensus 319 l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 398 (761)
+.+.+......-+......-...|++.|++++|.+.... +- +..+...=+..+.|..+.+-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 333443333333333333334445566666666655543 11 2222222244455555666666666666553
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHH
Q 004324 399 SASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY 474 (761)
Q Consensus 399 ~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~ 474 (761)
-+..|.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++..+.....+..+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 234444444444433 23455666666665543 355556666666666666666666666666655444455555
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHhhh
Q 004324 475 GIYLESLKNAGNI-EKAEEIFNHMHS 499 (761)
Q Consensus 475 ~~li~~~~~~g~~-~~A~~l~~~m~~ 499 (761)
..+|..-...|.. +--.+.+.+.+.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5554444444433 223334444443
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.65 E-value=0.0023 Score=57.27 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
...+...+...|+.++|.+.++.+...+ ..+...+..+...|.+.|++++|..+++...+..+.+..++..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344445555555555555555555533 224455555555555666666666666655544445556666666666666
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
No 141
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.12 Score=54.76 Aligned_cols=371 Identities=12% Similarity=0.053 Sum_probs=205.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHc
Q 004324 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVS 266 (761)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~~~~~ 266 (761)
++.+..|+++.|...|-+-+..... |.+-|..=..+|+ ..|++++|++==.+-++ +.|+=. -|+-.=.++..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a---~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYA---SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHH---HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHh
Confidence 4566889999999999999887654 8889999999999 69999999987777765 456522 23333333322
Q ss_pred CCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHH----HHHHcCCC-----CCHHHHHH
Q 004324 267 KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKK----EMQQAGFE-----EGKEVLLS 337 (761)
Q Consensus 267 ~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~----~m~~~g~~-----p~~~~~~~ 337 (761)
. |++++|..-|.+=++.... +...++.+..++.- . .++.+.|. .+...+.. .....|..
T Consensus 83 l------g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~-~----~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 83 L------GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE-D----YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred c------ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH-H----HHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 2 5999999999987776642 45666666644310 0 01111111 00000000 00111222
Q ss_pred HHHHHH----------hcCChHHHHHHHHH-----HHhCC-------CCC---------C-------------HHHHHHH
Q 004324 338 VLRVCA----------KEGDVEDAEKTWLR-----LLESD-------NGI---------P-------------TPAFVYK 373 (761)
Q Consensus 338 ll~~~~----------~~g~~~~a~~~~~~-----m~~~g-------~~~---------~-------------~~~~~~l 373 (761)
++..+- .-.++..|.-++.. +...+ ..| . ..-...+
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 222211 11111111111100 00001 011 0 0123456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP--L----MPSYINLTNMY 447 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~t~~~li~~~ 447 (761)
.++.-+..+++.|.+-+....+.. -++.-++..-.+|...|...+....-....+.|-.- + ...+.-+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 777888889999999998887763 234445666678888888888777777766655321 1 11222344467
Q ss_pred HhcCCHHHHHHHHHHHHh-CCCCCHHHHHH-------------------------HHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 448 LNLGMHDRLHLAFSECLE-KCRPNRTIYGI-------------------------YLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~-------------------------li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
.+.++.+.+...|.+.+. .-.|+..+-.. =...+.+.|++..|...+.+++.+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 778889999999988765 33333322110 1223445566666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhh
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~ 581 (761)
+-|...|.....+|.+.|.+.+|++=.+.-++ .+|.. .-.|.-=..
T Consensus 389 --P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~----------------------------~kgy~RKg~ 434 (539)
T KOG0548|consen 389 --PEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNF----------------------------IKAYLRKGA 434 (539)
T ss_pred --CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchH----------------------------HHHHHHHHH
Confidence 44555666666666666666666555444443 23332 222222222
Q ss_pred hhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 582 ~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
++....+++.|.+.+. ++++|++......+..
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3344456777777776 6777776654333333
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.63 E-value=0.0029 Score=66.68 Aligned_cols=124 Identities=11% Similarity=0.048 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.+|+..+...++++.|.++|+++.+.. |++. ..|+..+...++-.+|.+++.+..+.. +-+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345555666788888888888888763 5543 346777777788888888888888642 33566666667778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++.+.|.++.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999888875566677999999999999999999999988874
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.14 Score=54.29 Aligned_cols=421 Identities=13% Similarity=0.106 Sum_probs=231.9
Q ss_pred hhhhhccchhHHHHHHHHHHh-----hcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCChhHHHHHHHHHH
Q 004324 100 EVIELEELPEQWRRAKLAWLC-----KELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRENETGFRVYEWMM 171 (761)
Q Consensus 100 ~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~~~~a~~~~~~m~ 171 (761)
..+..++-|. ++-+|.. ...+.+++..+.+.+. ++-|..-.+... .-.+.++++....+|.+..
T Consensus 9 ~~~rie~nP~----di~sw~~lire~qt~~~~~~R~~YEq~~----~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 9 PRERIEENPY----DIDSWSQLIREAQTQPIDKVRETYEQLV----NVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHHhcCCc----cHHHHHHHHHHHccCCHHHHHHHHHHHh----ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566677773 4455542 2335666666666544 355665555444 4557788888888888887
Q ss_pred HcCCCCCCHHHHHHHHHHHHh-cCChhHHH----HHHHH-HHHCCCCCC-HHHHHHHHHHHhcC------CCCCCHHHHH
Q 004324 172 QQHWYRFDFALATKLADYMGK-ERKFAKCR----DIFDD-IINQGRVPS-EMTFHILIVAYLSA------PVQGCLDEAC 238 (761)
Q Consensus 172 ~~~~~~~~~~~~~~li~~~~~-~g~~~~A~----~~f~~-m~~~g~~pd-~~~~~~li~~~~~~------~~~g~~~~A~ 238 (761)
..- + +...|..-|+.--+ .|+...++ +-|+- |.+.|+.+- -..|+.-|.-+-.. ..+.+++...
T Consensus 81 vkv-L--nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vR 157 (656)
T KOG1914|consen 81 VKV-L--NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVR 157 (656)
T ss_pred HHH-h--hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHH
Confidence 763 3 56677777765443 33333332 23333 334454332 23366555443211 0334566677
Q ss_pred HHHHHHHhcCCCCC------CHHHHHHHHHHH-HcCCCCCchhhHHHHHHHHHHHH--HcCCCcCHH------HHH----
Q 004324 239 SIYNRMIQLGGYQP------RPSLHNSLFRAL-VSKPGGLSKYYLQQAEFIFHNLL--TSGLEIQKD------IYS---- 299 (761)
Q Consensus 239 ~l~~~m~~~~g~~p------~~~t~~~ll~~~-~~~~g~~~~g~~~~A~~~~~~m~--~~~~~p~~~------~~~---- 299 (761)
++|+++... .+.- |-..|-.-|+-. +++--+...-.+..|.++++++. ..|+.-... |-.
T Consensus 158 riYqral~t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q 236 (656)
T KOG1914|consen 158 RIYQRALVT-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ 236 (656)
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence 777777643 1100 011111111111 00000000026677778877763 334321111 100
Q ss_pred ---HHHHHHhhcc------CCCH--HHHHHHHHH-HHHcCCCCCHHHH-H----HHHHHHHhcCCh-------HHHHHHH
Q 004324 300 ---GLIWLHSYQD------NIDK--ERISLLKKE-MQQAGFEEGKEVL-L----SVLRVCAKEGDV-------EDAEKTW 355 (761)
Q Consensus 300 ---~li~~~~~~~------~g~~--~~a~~l~~~-m~~~g~~p~~~~~-~----~ll~~~~~~g~~-------~~a~~~~ 355 (761)
|.-++..-.. .|.. .+..-.+++ |.-.+..|+..-. . ..-+.+...|+. +++..++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 1000011000 0000 112222222 2233444443221 1 111233344444 3444455
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYA---KIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
+.....-..-+..+|..+.+-=- +-.+.+...+.++++...- +.| ..+|-..++.--+..-+..|..+|.+..+.
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 44443322223333333322111 1112445555666655432 233 346777788888888899999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--H
Q 004324 432 GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--R 508 (761)
Q Consensus 432 g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~ 508 (761)
+..+ .++.+++++.-||. ++.+-|.++|+.-++....+..--+..++-+...++-..|..+|++....+ +.|+. .
T Consensus 396 ~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-l~~~ks~~ 473 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-LSADKSKE 473 (656)
T ss_pred cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-CChhhhHH
Confidence 8777 88889999988874 577889999998777666666666788888999999999999999999885 66664 6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|..+|.-=+.-|+...+.++-+++..
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999999888874
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.001 Score=55.04 Aligned_cols=81 Identities=10% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCCC-------CHHHHHHHHHHHHhcCCCCCCH
Q 004324 183 ATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIVAYLSAPVQG-------CLDEACSIYNRMIQLGGYQPRP 254 (761)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~~~~~~~~~g-------~~~~A~~l~~~m~~~~g~~p~~ 254 (761)
....|.-+...+++...-.+|+.+++.|+ .|++.+||.++.+.+. |.= +.-+.+.+|+.|... +++|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~--R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK--RELDSEDIENKLTNLLTVYQDILSN-KLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--ccccchhHHHHHHHHHHHHHHHHHh-ccCCcH
Confidence 34456666677999999999999999999 8999999999999884 222 345678899999987 799999
Q ss_pred HHHHHHHHHHHc
Q 004324 255 SLHNSLFRALVS 266 (761)
Q Consensus 255 ~t~~~ll~~~~~ 266 (761)
.||+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0013 Score=69.59 Aligned_cols=124 Identities=7% Similarity=-0.010 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004324 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD--NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (761)
Q Consensus 327 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (761)
+...+......+++.+....+++++..++-...... ...-..|..++|..|.+.|..++|+++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344466777777777777777888887777766551 111223445788888888888888888888788888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777777666666665
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0014 Score=54.34 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIG--------EFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..|..|...+++...-.+|+.+++.|+ .|++.+|+.++.+-++.. ++-+.+.++..|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444445666666666666666666 566666666665555432 23345555566666666666666666
Q ss_pred HHHHHHh
Q 004324 408 IIELLCK 414 (761)
Q Consensus 408 li~~~~~ 414 (761)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655443
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0014 Score=69.21 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHH
Q 004324 397 LGSASVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTI 473 (761)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~ 473 (761)
+.+.+.+....+++.+....+++++..++.+.+.. ....-..|..++|+.|.+.|..+.+..++..=.. |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445566666676666666777777777766653 2222234455777777777777777777776655 77777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
+|.||+.+.+.|++..|.++.-+|..++ ...+..|+.--+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666 445566666666655554
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.052 Score=51.98 Aligned_cols=186 Identities=13% Similarity=0.076 Sum_probs=102.6
Q ss_pred hcCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCC
Q 004324 344 KEGDVEDAEKTWLRLLES---D-NGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IELLCKAEE 417 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~ 417 (761)
...+.++..+++.++... | ..++.. .|.-++-+...+|+.+-|...++++..+- |...-...| .--+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 345566666666665542 2 333332 23344555566677777777777766552 222111111 111234566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+++|.++++.+.+.. +.|.+++--=+.+.-..|+.-+|++-+....+.+..|...|.-|-..|...|++++|.-.+++|
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 777777777777655 4455555554555555566666666666666666677777777777777777777777777776
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Q 004324 498 HSDQTIGVNTRSCNIILSAYLSSG---DFVKAEKIYDLMC 534 (761)
Q Consensus 498 ~~~g~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~ 534 (761)
.-.. |-+...|..+...+.-.| +.+-|.++|.+.+
T Consensus 181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6643 223444444444433333 2344555555544
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.007 Score=54.87 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAE 352 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~ 352 (761)
+...+...++.+.+......-.....+.....+...|++++|...|+........|+. .....+...+...|++++|.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544332223334444445555555555555555555554322211 12223444455555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
..++....... ....+....+.|.+.|+.++|...|+
T Consensus 106 ~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 106 ATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55544322221 22334444555555555555555554
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.13 Score=49.34 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=133.9
Q ss_pred ccCCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 308 QDNIDKERISLLKKEMQQ---AG-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
+...+.++..+++.+|.. .| ..++..+ |--++-+....|+.+.|...++.+...-+. +..+--.-.--+--.|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 445567888888887754 34 6666654 456667777888899999988888776422 11111111222344688
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+++|.++++.+.+.. +-|.++|---+...-..|+.-+|++-+....+. +..|...|.-|...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 899999999888765 446677766666666677777777777777664 466888999999999999999999988888
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g 501 (761)
++=.-+-+...+..+.+.+--.| +++-|.++|.+..+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 87544556666666666655444 5677888888887753
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0025 Score=64.86 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|.....+ |...++.+.|.++|+...+.+..+...|...|+.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 457777777777777888888888887543 2223334433334 22345666788888888887778888899999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 482 KNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.|+.+.|..+|++.... +.++. ..|...|.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998876 43333 4888889888899999999999998886
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0027 Score=51.96 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
..+...+...|++++|...+....+..+.+...+..+...|...|++++|.+.|+...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 3444555556666666666666554333444556666666666666666666666665543 23344566666666666
Q ss_pred CCHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMC 534 (761)
Q Consensus 521 g~~~~A~~~~~~m~ 534 (761)
|++++|...+.+..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666655
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.36 E-value=0.43 Score=53.94 Aligned_cols=384 Identities=13% Similarity=0.101 Sum_probs=228.0
Q ss_pred Ccchhhhh---HHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004324 144 QEDGTYLA---VHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (761)
Q Consensus 144 p~~~t~~~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~ 220 (761)
|+.-...+ +...|.|+.++|..+++.....+ ..|..+...+-.+|-..++.++|..++++.... .|+..-...
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence 44443333 36779999999999999888776 448999999999999999999999999999876 577777778
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCch----hhHHHHHHHHHHHHHcCCCcCHH
Q 004324 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSK----YYLQQAEFIFHNLLTSGLEIQKD 296 (761)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~----g~~~~A~~~~~~m~~~~~~p~~~ 296 (761)
+..+|+ |.+.+.+-.+.=-+|-+ .+.-+.+.|-++++........... --+.-|.+.++.+.+.+- +-..
T Consensus 116 lFmayv---R~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s 189 (932)
T KOG2053|consen 116 LFMAYV---REKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIES 189 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccch
Confidence 888888 67777665444444444 2445678888888876654321111 134567788888876651 2122
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 375 (761)
.--..+........|++++|++++. .....-...+...-+--+..+...+++.+..++-.++...|.. | |...++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHH
Confidence 2223333355667788999999984 4443333445555567778888999999999999999888853 2 444333
Q ss_pred HHHH----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCC-
Q 004324 376 AYAK----------------IGEFMKSLEIFREMQERLGSASVPAYHKIIELL---CKAEETELTESLMKEFVETGMKP- 435 (761)
Q Consensus 376 ~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p- 435 (761)
.+++ .+..+...+...+-.....+ -.|-+=+.++ -.-|+.+++...|-+ +-|-.|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpc 340 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPC 340 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcH
Confidence 3332 22222222222222221111 1122222222 233555554333211 111111
Q ss_pred -----------------------------CHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH----hC----
Q 004324 436 -----------------------------LMP-------SYINLTNMYLNLGM-----HDRLHLAFSECL----EK---- 466 (761)
Q Consensus 436 -----------------------------d~~-------t~~~li~~~~~~g~-----~~~a~~~~~~m~----~~---- 466 (761)
+.. -+.+.+..-.-.|. -+.-..++.++. .|
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 110 01111111112221 122222332222 12
Q ss_pred --CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 467 --CRPNRT---------IYGIYLESLKNAGNIE---KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 467 --~~p~~~---------~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+-|... +-|.||+.+-+.++.. +|+-+++.-.... +-|..+=-.+|..|+-.|-...|.++|+-
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 222222 4468889999888755 5666666666653 44666777888999999999999999998
Q ss_pred HHHcCCccChHHHHHHHH
Q 004324 533 MCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 533 m~~~g~~~~~~~~~~~~~ 550 (761)
|--+. +..+|+.|+..
T Consensus 499 LdIK~--IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 499 LDIKN--IQTDTLGHLIF 514 (932)
T ss_pred cchHH--hhhccchHHHH
Confidence 86554 45556665544
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.35 E-value=0.011 Score=53.58 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCH
Q 004324 415 AEETELTESLMKEFVETGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYGIYLESLKNAGNI 487 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~~li~~~~~~g~~ 487 (761)
.++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+.... |+. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555532 111 1222334445555666666666666655422 221 2333445566666667
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++|+..++...... .....+......|.+.|++++|...|++
T Consensus 102 d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666665543332 2334555556666667777777666654
No 155
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.32 E-value=0.22 Score=49.85 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIV---AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~---~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
++.-.--|-..+...|.+.+|+.-|....+- |+..|-++.+ .|. -.|+..-|+.=|....+ .+||-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yL---AmGksk~al~Dl~rVle---lKpDF~ 106 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYL---AMGKSKAALQDLSRVLE---LKPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHh---hhcCCccchhhHHHHHh---cCccHH
Confidence 3333444555666778888888888888775 5555555443 344 36777888888888876 568743
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.-..-=.... +..|.+++|..=|+.++.....- |...+|.+-+.... .....
T Consensus 107 ~ARiQRg~vl-----lK~Gele~A~~DF~~vl~~~~s~-----------------~~~~eaqskl~~~~------e~~~l 158 (504)
T KOG0624|consen 107 AARIQRGVVL-----LKQGELEQAEADFDQVLQHEPSN-----------------GLVLEAQSKLALIQ------EHWVL 158 (504)
T ss_pred HHHHHhchhh-----hhcccHHHHHHHHHHHHhcCCCc-----------------chhHHHHHHHHhHH------HHHHH
Confidence 3221111111 11268888888888877655321 11111111111000 11223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...+..+...|+...|......+.+..+ -|...|..-..+|...|.+..|+.=++...+.. .-+..++--+-.-+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 3445556677888888888888777643 366667777788888888888877666554432 22455555666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (761)
|+.+.++...++.++ +.||....-.. | ..+.+..+.++.|. .....+++.++++-.+
T Consensus 237 gd~~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e---------------~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAE---------------QAIEEKHWTECLEAGE 293 (504)
T ss_pred hhHHHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHH---------------HHHhhhhHHHHHHHHH
Confidence 888877777777666 45664332211 1 11222222333332 2334577888888887
Q ss_pred HhhhCCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 496 HMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 496 ~m~~~g~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+.. |. ...+..+-.+|...|++.+|++.-.+.++
T Consensus 294 ~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 294 KVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 777654 43 23445566778889999999999999984
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0031 Score=59.07 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------ChHHHH
Q 004324 329 EEGKEVLLSVLRVCAK-----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----------------EFMKSL 387 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~ 387 (761)
..|..+|..+|..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=|.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777764 4667777777778888888888888888887776522 123344
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
+++++|...|+.||..|+..|++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 44444444444444444444444444433
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0046 Score=50.53 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
.+...+...|++++|...++...+.. ..+...+..+...|...+++++|.+.|....+..+.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444444555555555555554432 11224444455555555555555555555554333444555666666666666
Q ss_pred HHHHHHHHHHhhh
Q 004324 487 IEKAEEIFNHMHS 499 (761)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (761)
+++|...+.....
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666665544
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0042 Score=58.17 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----------------ETELTES 423 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~A~~ 423 (761)
.+-.+|..+|+.|.+. |.++=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3678888888888865 677888888889999999999999999998775421 2233444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 424 LMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 424 l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
++++|...|+-||..|+..|++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 5555555555555555555544444443
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.0084 Score=52.00 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~p~~~t~~~li 514 (761)
++..+...+.+.|++++|...|..+.+..+. ....+..+...+.+.|++++|.+.|+.......- +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555666666667777666666542221 1345556677777777777777777777654200 01134566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 004324 515 SAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777753
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.04 E-value=0.027 Score=48.78 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=6.4
Q ss_pred HHHcCChHHHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREM 393 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m 393 (761)
+.+.|++++|.+.|..+
T Consensus 12 ~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.92 E-value=0.04 Score=51.63 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
..+..+...|...|++++|...|++.......+. ...|..+...+.+.|++++|...+.+..+.. .-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666666666666666554322111 2345555555566666666666665555532 112334444444
Q ss_pred HHHhcCCHHH
Q 004324 446 MYLNLGMHDR 455 (761)
Q Consensus 446 ~~~~~g~~~~ 455 (761)
.|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 4544444433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.88 E-value=0.024 Score=57.65 Aligned_cols=130 Identities=8% Similarity=0.160 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
+|..++...-+.+..+.|..+|.+..+.+ +..++....+++.- ...++.+.|..+|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666665432 12223222333322 2234555566666666654 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.+.++.+.|+.+|+.....+.++. ..|...|+-=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777765433332 57888888888888888888888888774
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.012 Score=57.76 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhc
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~ 560 (761)
+.+.+++++|+..|.+.++- .+-|.+-|..-..+|++.|.++.|++-.+..+. ++|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~y---------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHY---------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHH----------------
Confidence 34456666666666666654 234555555556666666666666665555442 55543
Q ss_pred ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
.-+|..|--++...|++++|.+.++ ++++|++..+...|..
T Consensus 149 ------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 149 ------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 5556666666666666666666655 6666666644444433
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.84 E-value=0.022 Score=60.22 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
..|++++|.++|++.++.. .-+...|..+..+|.+.|++++|...++..++..+.+...|..+..+|...|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444444432 112333444444444444444444444444432233444444444444444444444444
Q ss_pred HHHhhh
Q 004324 494 FNHMHS 499 (761)
Q Consensus 494 ~~~m~~ 499 (761)
|++...
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 444444
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.72 E-value=0.018 Score=60.88 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
...+...|++++|...|.+.++..+.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 4456667788888888888877556677777777888888888888888888887764 34566777777788888888
Q ss_pred HHHHHHHHHHHH
Q 004324 524 VKAEKIYDLMCL 535 (761)
Q Consensus 524 ~~A~~~~~~m~~ 535 (761)
++|+..|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888888887774
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.69 E-value=0.0049 Score=49.80 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|+++.|..+++++.+..+ ++...+-.+..+|.+.|++++|..++++ ...+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566677777777665222 2444455577777777777777777777 2221 112233444466677777777777
Q ss_pred HHHHH
Q 004324 528 KIYDL 532 (761)
Q Consensus 528 ~~~~~ 532 (761)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.62 E-value=0.23 Score=50.74 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh---CC-CC--CHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLE---KC-RP--NRTIYGIY 477 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~---~~-~p--~~~~~~~l 477 (761)
|...+..|...|++..|-+++.. +...|... |++++|.+.|.+..+ .. .+ -..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33445556666666666555544 44456666 788888888888764 11 11 13356677
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQT----IGVNTR-SCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~----~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
...+.+.|++++|.++|++...... .+.+.. .|-..+-.+...|++..|.+.|++....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999876431 122232 3334455677789999999999998853
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.62 E-value=0.43 Score=47.33 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.+..-|.+.|.+..|..-|+.+++ +.+......-.++.+|...|..++|.++.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344556666666666666666665 333444455566667777777777766655443
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.11 Score=44.91 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcC
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAG 485 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g 485 (761)
++-..|+.++|..+|++....|+... ...+..+...|...|++++|..+|++.....+. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34445555555555555555554433 223444455555555555555555555432211 1222222233455556
Q ss_pred CHHHHHHHHHHhh
Q 004324 486 NIEKAEEIFNHMH 498 (761)
Q Consensus 486 ~~~~A~~l~~~m~ 498 (761)
+.++|++.+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666554443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.61 E-value=0.0049 Score=49.78 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGM-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
|+++.|..+++++.+..- .|+...+..+..+|.+.|++++|..+++. .+....+....-.+..+|.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455555555444321 11222333344455555555555555544 1100112223333345555555555555555
Q ss_pred HH
Q 004324 495 NH 496 (761)
Q Consensus 495 ~~ 496 (761)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.59 E-value=0.12 Score=48.34 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
...+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567777778888999999999988887654332 3577788888889999999999988887652 22455666666
Q ss_pred HHHHhcCCHHHHHHHH
Q 004324 410 ELLCKAEETELTESLM 425 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~ 425 (761)
..+...|+...+..-+
T Consensus 114 ~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHcCChHhHhhCH
Confidence 7777777765554333
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.56 E-value=0.011 Score=45.48 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
+.|++++|.++|+.+....+-+...+-.+..+|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 44556666666666655445566666666666666666666666666666643 554444433
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.52 E-value=0.065 Score=49.94 Aligned_cols=78 Identities=12% Similarity=-0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
|..+...+...|++++|...|+........| ...++..+...|.+.|++++|...+....+..+....+++.+...|.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444444444555555555555554432111 12344455555555555555555555554422333344444444444
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.51 E-value=0.14 Score=46.40 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 545 (761)
..+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.++|+++.. -|+.|+|.+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3466677888888999999999999999875 55788999999999999999999999988853 3777777763
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.50 E-value=0.17 Score=56.09 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+...|.++.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++..+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556778888777777899999999999998864 7888899999999999999999999998874
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.41 E-value=0.13 Score=56.99 Aligned_cols=144 Identities=9% Similarity=-0.062 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 004324 433 MKPLMPSYINLTNMYLNLG-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIEKAEEIFNHMHS 499 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~ 499 (761)
...|...|...+.+..... ..+.|..+|++..+.-+-+...|..+..+|... +++..+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3445556665555543321 245666666666653344444555443333222 123445555554433
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHH
Q 004324 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 500 ~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 579 (761)
....+.+...|.++.-.+...|++++|...+++..+.. |. ...|..+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps-----------------------------~~a~~~l 459 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MS-----------------------------WLNYVLL 459 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-----------------------------HHHHHHH
Confidence 21123456788888777778899999999999998632 22 4567777
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchhhHH
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSV 609 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~ 609 (761)
...+...|+.++|...++ +.++|..++.|.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 888889999999999998 899999886443
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.32 E-value=0.087 Score=49.07 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA--SVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
..|..+...+...|++++|...|++.......+ ...+|..+...+...|+.++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555566666666666554332111 123455555566666666666666666554
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.25 E-value=0.2 Score=43.23 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=57.9
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKI 380 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~ 380 (761)
..+-..|+.++|+.+|++....|+... ...+-.+-+.+...|++++|..+++......+.. +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344456667777777777776665543 2234455566667777777777777666543220 112222233455666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
|+.++|++.+-..... +...|.--|..|+
T Consensus 89 gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 7777777666554432 3335555555444
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.24 E-value=0.12 Score=46.32 Aligned_cols=94 Identities=7% Similarity=-0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
.-.+..-+...|++++|.++|+.+..--+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHH
Confidence 33444556677788888888777765445566677777777777888888888888777654 3456777777777888
Q ss_pred CCCHHHHHHHHHHHHH
Q 004324 520 SGDFVKAEKIYDLMCL 535 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (761)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887764
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.22 E-value=0.021 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|..+|++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555542 2233445555555555555555555555554
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.21 E-value=0.12 Score=46.34 Aligned_cols=88 Identities=9% Similarity=-0.050 Sum_probs=41.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
-+...|++++|..+|+.+.... .-+..-|-.|.-+|-..|++++|...|.....--+.|...+-.+..+|...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3344455555555555444422 112333334444444445555555555554442234444555555555555555555
Q ss_pred HHHHHHhhh
Q 004324 491 EEIFNHMHS 499 (761)
Q Consensus 491 ~~l~~~m~~ 499 (761)
.+-|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.097 Score=51.61 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~ 525 (761)
..+.+++++|...|.+.++-.+.|.+-|..-..+|++.|.++.|.+=.+..+.-+ |. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHH
Confidence 4566778888888888777666777778888888888888888888887777743 43 4688888888888888888
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|++.|++.++
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 8888887763
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.12 E-value=0.024 Score=43.61 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCL 535 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (761)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35667777777777778888888887777754 335567777777777777 67777777777664
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.98 E-value=1.9 Score=42.75 Aligned_cols=177 Identities=11% Similarity=0.001 Sum_probs=96.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c-
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK--A- 415 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~- 415 (761)
.+.+.|++++|.+.|+.+....+...... .-.+..+|.+.+++++|...|++..+.--.-..+-|...+.|.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 33456666666666666665543321111 122455566666666666666666543211112223333333321 0
Q ss_pred --------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 416 --------------EE---TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 416 --------------g~---~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
.+ ..+|...|+.+++. -|+ ..-..+|...+..+...+ ...--.+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l---a~~e~~ia 182 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL---AKYELSVA 182 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 11 23455566665553 233 222344444444433211 11112456
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQT-IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.-|.+.|.+..|..-|+.+.++-. .+........++.+|.+.|..++|.++...+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 778999999999999999988631 122345666888999999999999998877653
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.97 E-value=0.024 Score=43.47 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
..|++++|.++|+.+.... +.+..++-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4567777777777777764 556667777777777777777777777777765 35545555444
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.74 E-value=0.05 Score=41.25 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
+...+.+.|++++|.+.|+.+++..+-+...|..+...+...|++++|..+|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999998667789999999999999999999999999998753
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.72 E-value=1.2 Score=42.80 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~----~t~~~li~~~~~~g~~~~A 526 (761)
+..-|.+.|.+..|..-|+.+.++- |+. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666666666666666666652 332 2345556666666665533
No 188
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.66 E-value=0.84 Score=39.28 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+....+..++.+...|+-+.-.++.+++.+.+ .++......+..||.+.|+..+|.+++.+..++|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556677777788777777777776544 45666777777788888888888888888877764
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.58 E-value=3.4 Score=42.71 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
..|.-+...|+...|.++-.+.. + ||..-|-..|.+|+..+++++-.++-.. . -.++-|-.++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence 33455555666666655544431 2 4566666666666666666654443221 1 12245666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
+..+|..+...+ .+..-+..|.++|.+.+|.+.-
T Consensus 252 ~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 666666555441 1244556666666666665543
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.32 Score=46.93 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=68.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HH
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-----NM 446 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-----~~ 446 (761)
+++..+.-.|.+.-.+.++.+..++.-+-+......|.+.-.+.|+.+.|...|+...+..-+.|..+++.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3334444444444444444444443333333334444444444455555555554444322222222222222 22
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
|.-.+++..|...|.++.+....|+..-|.-.-++.-.|+..+|.+..+.|...- |...+-+++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~~l~es~ 325 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRHYLHESV 325 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhH
Confidence 3445566777777777766445555555544444444577888888888887753 555544433
No 191
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.54 E-value=0.18 Score=43.97 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
.|+..+..+++.+|+..|++..|+++.+...+.-.++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444443334444444444443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.49 E-value=0.064 Score=41.20 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHS 499 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (761)
..+|..+...+...|++++|...|.+.++-.+.+...|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555566666666666666666666544455666666666666666 56666666666554
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.47 E-value=1.3 Score=42.70 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A 490 (761)
+..-|.+.|.+..|..-++.+++..+-. ....-.|+.+|-+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3444555666666666666655432222 22334455566666655533
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.22 Score=43.50 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRL 358 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m 358 (761)
|..++.++|.++++.|+++....+.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 4567777788888888887777777544
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.42 E-value=3.6 Score=41.96 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.40 E-value=0.54 Score=48.27 Aligned_cols=299 Identities=15% Similarity=-0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH--hC--CCCC-CH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLL--ES--DNGI-PT 367 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~--~~--g~~~-~~ 367 (761)
.+...+-...+|+.|+......+|+...+.|-. |. .+|.-|-++|.-.+++++|.+.+..=. .+ |-+. ..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 333344456688999999999999999988754 43 346667788888899999998764311 11 1000 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-HHH---HHcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIF-REM---QERLGS-ASVPAYHKIIELLCKAEE--------------------TELTE 422 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~-~~m---~~~g~~-p~~~t~~~li~~~~~~g~--------------------~~~A~ 422 (761)
.+...|-+.+--.|.+++|.-.- +.+ .+.|-+ .....|-.|-..|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 12222333344445555554321 111 111100 011223334444433322 23333
Q ss_pred HHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFV----ETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KC-RPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~----~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+.|.+=. +.|-. .-...|..|...|.-.|+++.|...++.-++ |. ......+..|..++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 4433221 11200 0123566666677777899999887776442 22 234557888899999999999999
Q ss_pred HHHHHhh----hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 492 EIFNHMH----SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 492 ~l~~~m~----~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
+.++.-. +.|.-.....+..+|-+.|.-...+++|+.++.+=+. -+-.+....=
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa--------------IAqeL~DriG-------- 313 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA--------------IAQELEDRIG-------- 313 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhh--------
Confidence 8887642 3332234566788888888888888999988876542 1111111100
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccc----hhhHHHHHHHHHhhhhcc
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENS----RMHSVLRRYLYDQYHEWL 622 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~----~~~~~~l~~~~~~~g~~~ 622 (761)
....+-+|..++...|.-+.|....+ +.++-++ .+.-..|+++-...|.-+
T Consensus 314 ----e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 314 ----ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred ----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 03344457777777777777777655 2222222 234445666666666543
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.43 Score=49.16 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=101.1
Q ss_pred CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 435 PLMPSYINLT-NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 435 pd~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
|...++-.|- .++.-.|+.++|..+-..+++--..+ .+..++.+ +--.++.+.|..-|++-...+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD---PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccC---hhhhhHH
Confidence 3334444332 23455677777777766666422222 23333333 334567888888888877754 5544322
Q ss_pred HH-------------HHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHH
Q 004324 512 II-------------LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (761)
Q Consensus 512 ~l-------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 578 (761)
++ -+-..+.|++.+|.+.|.+.+ .++|+. .++++..|..
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal----~idP~n------------------------~~~naklY~n 292 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL----NIDPSN------------------------KKTNAKLYGN 292 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh----cCCccc------------------------cchhHHHHHH
Confidence 22 223457888888888888876 355552 2345666666
Q ss_pred HhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 579 LLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 579 ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
......+.|+.++|..-.+ +.++|.-...|..-++.|.-.++|++|.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887766 77777777777788888888888888875
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.24 E-value=2.4 Score=46.32 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 004324 179 DFALATKLADYMGKERKFAKCRDI---------FDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG 249 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~---------f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g 249 (761)
....+.+-+-.|...|.+++|..+ ++.+-... .+.--+++.=.+|.+. |.-.+-+-+.-+++|++. |
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~r-g 630 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRV-RDLRYLELISELEERKKR-G 630 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHH-hccHHHHHHHHHHHHHhc-C
Confidence 344455555667777888777553 12221110 1334456666667632 334444555556677776 6
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHH
Q 004324 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHN 285 (761)
Q Consensus 250 ~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~ 285 (761)
-.|+......++ +|. |.+.+|.++|.+
T Consensus 631 e~P~~iLlA~~~-Ay~--------gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 631 ETPNDLLLADVF-AYQ--------GKFHEAAKLFKR 657 (1081)
T ss_pred CCchHHHHHHHH-Hhh--------hhHHHHHHHHHH
Confidence 778766544333 222 477777777753
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.10 E-value=0.081 Score=41.81 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+|+.+...|...|++++|+..|++..+. |.-.|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666654421 101122 4456666666667777777777666654
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.03 E-value=0.43 Score=47.79 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~p~~~t~~~li 514 (761)
.|...+..+.+.|++++|...|+.+++..+-+ ..++--+...|...|++++|...|+.+.....- +.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444445566666666666665422222 235555666677777777777777777654200 00133344445
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+...|+.++|.++|++.++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556677777777777777764
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=3.8 Score=39.86 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHH-----
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIY----- 477 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~l----- 477 (761)
..+.++..+.-.|.+.-...++.+.++..-+-+......|.++-.+.|+.+.|...|+...+ .-+.|-.+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777777788888889999999876566788889999999999999999999998765 333444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
-..|.-.+++..|...|.+....+ +-|.+.-|.-.-...-.|+...|++.++.|++. -|.|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 445666789999999999988875 335555555444455578999999999999964 344443
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.99 E-value=4.7 Score=44.53 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCH--------HHHHHHHHHHHcCCCCCchhhHHHHHHHH
Q 004324 212 VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP--------SLHNSLFRALVSKPGGLSKYYLQQAEFIF 283 (761)
Q Consensus 212 ~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--------~t~~~ll~~~~~~~g~~~~g~~~~A~~~~ 283 (761)
.|....|..+...-. +.-.++-|...|-+.....|++.-- ..-.+-|.++. |.+++|++++
T Consensus 689 nPHprLWrllAe~Al---~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--------g~feeaek~y 757 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL---FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--------GEFEEAEKLY 757 (1189)
T ss_pred CCchHHHHHHHHHHH---HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--------cchhHhhhhh
Confidence 467788887776655 5667788888887775544442111 11112233333 4889999998
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004324 284 HNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLL 359 (761)
Q Consensus 284 ~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 359 (761)
-+|-.+++.. ..+.+.|++-.+.++++. -|-..| ...++.+-.-++....|++|.+.+..-.
T Consensus 758 ld~drrDLAi-----------elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 758 LDADRRDLAI-----------ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hccchhhhhH-----------HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8886655421 333455666666555542 111111 3355666666666666666666654321
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 360 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
. . ...|.+|.+...+++-..+-+.+.+ |....-.|...+.+.|.-++|.+.|-+. + .|
T Consensus 824 ~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p---- 881 (1189)
T KOG2041|consen 824 D------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP---- 881 (1189)
T ss_pred c------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc----
Confidence 1 1 1234444444444443333333322 3444445556666666666665554321 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY--------------GIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
-..+..|...+++.+|.++-+... -|.+.|. ---|..+.++|+.-+|-+++.+|.+
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 123444555555555555443322 1221111 1125566777777777777777754
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.96 E-value=3 Score=38.40 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCHHHHH
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYG 475 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~ 475 (761)
|++..--.|..++.+.|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+ +-.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 555555556666666666666666666665544455666666666666666677677666666654 12232 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
.+...|.-.|++.+|+.-|+.....- |+...-.-.-..+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45566777777777777777776643 44332222233355666655554433
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.96 E-value=0.17 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ-----ERLGSASVPA 404 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 404 (761)
.+...++..+...|++++|.++...+....+- +...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556667777888888888888888877653 77788888888888888888888887764 3477776654
No 205
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.94 E-value=1.4 Score=45.04 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHcCCCC
Q 004324 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEACSIYNRMIQLGGY--QPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~---~~~g~~~~A~~l~~~m~~~~g~--~p~~~t~~~ll~~~~~~~g~ 270 (761)
+.+...+++.|.+.|+..+..+|-+........ ...-...+|.++|+.|++...+ .++-+++..+|..-...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~--- 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSED--- 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhccccc---
Confidence 455677888999999888887776644443310 0113467889999999986322 45677787777652221
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI---DKERISLLKKEMQQAGFEEGKEVLLS 337 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~~~~~ 337 (761)
..--.+.++..|+.+.+.|+......... ..+.+++..- ...++.++++.+.+.|+++....|..
T Consensus 155 -~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~L-S~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 155 -VEELAERMEQCYQKLADAGFKKGNDLQFL-SHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcHHHHH-HHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 11244677777888877777665443321 1111111111 13466777777777777766655543
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.90 E-value=3.1 Score=38.30 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSASVPAY 405 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 405 (761)
.|++.---.|..+..+.|+..+|...|++...--+.-|....-.+..+....++...|...++.+.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 444444445556666666666666666665543333345555555555566666666666666554431 22222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
-.+...|...|...+|..-|+..... -|+...-..-...+.+.|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 23445555566666666666665552 3333333333344455555555444443333
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.89 E-value=0.59 Score=46.80 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIY 477 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~l 477 (761)
|...+.-+.+.|++++|...|+.+++.- |+ ..++..+...|...|++++|...|..+.+..+. ....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 22 134445555555666666666666665542222 23333334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
...|...|+.++|..+|++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555666666666666666654
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.51 Score=46.95 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
|...|-.|...|...|+...|..-|....+-..+|...+..+..++.... ...+|.++|+++.... +-|+.+-.-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHHHH
Confidence 34444444444444444444444444444433333444444333333221 2334445555554443 223333333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|..++...|++.+|...|+.|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444455555555555555543
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.81 E-value=0.89 Score=47.37 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
=...|...|++.-+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+.-...++.+..--+-.+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35667788888888888888888888888888 6778888888888776 456677888887765544444444456677
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
-+...++-+.|..+|+.-+.+ +..+ ...|..+|.-=..-|+...|..+=++|.+ .-|...+.+-+..-+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 777888888888898866554 3334 46788888888888999888888888875 346655555444333
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.77 E-value=0.17 Score=39.20 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|.+.++++.|.++++.+.+-.+.+...|......|.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444332233334444444444444444444444444443
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.51 E-value=0.83 Score=46.97 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=143.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH--HHHc--CCCC-CHHHHHHHHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAKIGEFMKSLEIFRE--MQER--LGSA-SVPAYHKIIE 410 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~~p-~~~t~~~li~ 410 (761)
.-+|+.|+...+..+|+..++.|-. |. ..|.-|-++|.-.+++++|+++... ...+ |-+. ...+-..|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998853 33 3466677888888899999887532 1110 0000 0111111222
Q ss_pred HHHhcCCHHHHH-----------HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 004324 411 LLCKAEETELTE-----------SLMKEFVETGMKPLMPSYINLTNMYLNLGM--------------------HDRLHLA 459 (761)
Q Consensus 411 ~~~~~g~~~~A~-----------~l~~~m~~~g~~pd~~t~~~li~~~~~~g~--------------------~~~a~~~ 459 (761)
.+--.|.+++|. ++=+++.+ ...+-.|...|-..|+ ++.|.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 222334444443 33333222 2344555565554441 2334444
Q ss_pred HHHHHh-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 460 FSECLE-----KC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHM----HSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 460 ~~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
|.+=++ +. -.--..|..|...|--.|+++.|....+.= .+-|.-......+..|-+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 433221 10 011124555566666678888887665432 12221112345677788888888888888888
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH------hhcc--
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR------FQFN-- 601 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~l~-- 601 (761)
|+.-.. .+..++.+.++ ....-+|.+.|....+++.|+..+. .+++
T Consensus 258 YK~tl~--------------LAielg~r~vE------------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 258 YKLTLN--------------LAIELGNRTVE------------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred HHHHHH--------------HHHHhcchhHH------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876542 23344444333 4445567777777778888877765 1221
Q ss_pred ccchhhHHHHHHHHHhhhhccCCCC
Q 004324 602 ENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 602 p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
-.....+..|++.|...|..++|..
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 1233456678888888888887765
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=1.9 Score=42.96 Aligned_cols=114 Identities=5% Similarity=-0.005 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCHHHHH
Q 004324 399 SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL---GMHDRLHLAFSECLEKCRPNRTIYG 475 (761)
Q Consensus 399 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~~~p~~~~~~ 475 (761)
+-|...|-.|-..|...|+.+.|..-|....+.- .++...+..+..++... ....++..+|+++++..+-|+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4588999999999999999999999999999832 23455555555554433 2467899999999987788889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
-|...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l---p~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL---PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---CCCCchHHHHHH
Confidence 99999999999999999999999974 555566666643
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.5 Score=37.79 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
.++..+.+.+.......+++.+...+. .+...+|.+|..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 445555555566666666666655543 3555566666666654
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.44 E-value=8.4 Score=41.30 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHH
Q 004324 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (761)
Q Consensus 218 ~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (761)
...|-.+. |..+.+.-+++=++..+ +.||..+.-+++..=.. ..+.+|+++|++..+.|-. .
T Consensus 172 q~IMq~AW----RERnp~aRIkaA~eALe---i~pdCAdAYILLAEEeA-------~Ti~Eae~l~rqAvkAgE~----~ 233 (539)
T PF04184_consen 172 QEIMQKAW----RERNPQARIKAAKEALE---INPDCADAYILLAEEEA-------STIVEAEELLRQAVKAGEA----S 233 (539)
T ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHH---hhhhhhHHHhhcccccc-------cCHHHHHHHHHHHHHHHHH----h
Confidence 34444454 35666666666666664 45776665555533111 1577888888777655421 1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 004324 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFVYKMEA 376 (761)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~ 376 (761)
+..- ......|. .++.+..+...|=..+-..+-.++-+.|+.++|.+.+++|.+..... ...+...||.+
T Consensus 234 lg~s---~~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 234 LGKS---QFLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hchh---hhhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 1000 00011111 11112222222223333455666668888888888888887654322 33456678888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKII 409 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li 409 (761)
+...+.+.++..++.+-.+...+. -...|++.+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 888888888888888765432211 234566544
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.37 E-value=1.4 Score=45.03 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--
Q 004324 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-- 292 (761)
Q Consensus 215 ~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~-- 292 (761)
..++.+++...... -...+++.+.+++.|.+. |++-+.++|-+..............-....|..+|+.|.+...-
T Consensus 60 ~~~la~~l~~~~~~-p~~~~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 60 RFILAALLDISFED-PEEAFKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 34444555443300 012356677788999987 89999888877554444311111123677888888888776532
Q ss_pred -cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCH
Q 004324 293 -IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE--VLLSVLRVCAKEGD--VEDAEKTWLRLLESDNGIPT 367 (761)
Q Consensus 293 -p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~ 367 (761)
++..++..++....---.--.+.++.+|+.+...|+..+.. ..+.+|..+..... +..+.++++.+.+.|+++..
T Consensus 138 s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 138 SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 33444444442111000011245556666666666554322 22222222221111 23455555566666555444
Q ss_pred HHHH
Q 004324 368 PAFV 371 (761)
Q Consensus 368 ~~~~ 371 (761)
..|.
T Consensus 218 ~~yp 221 (297)
T PF13170_consen 218 MHYP 221 (297)
T ss_pred cccc
Confidence 4443
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.37 E-value=0.68 Score=45.19 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
-+..++++|...|+.||..+-..|+.++.+.+.
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 456677777777777777777777777766654
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.26 E-value=5.4 Score=38.29 Aligned_cols=219 Identities=14% Similarity=0.038 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFE-EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (761)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+....+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444433221 13566777777888888888888887777652 22234566667777777888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 391 REMQERLGSASVPAYHKIIE-LLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.........+ ......... .+...|+.+.|...+.+.....- ......+......+...++.+.+...+....+..
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 8877653332 122222333 68888999999999988855221 1234445555555778889999999999888755
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.. ....+..+...+...+.++.|...+....... |+ ...+..+...+...|..+++...+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 57888888889999999999999999988863 33 45555555555577778888888888875
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.24 E-value=0.14 Score=40.50 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PN-RTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+|+.+...|...|++++|+..|++..+ ... |+ ..+++.+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555555555442 111 11 4456666666777777777777666543
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.21 E-value=0.78 Score=44.82 Aligned_cols=48 Identities=2% Similarity=-0.043 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET-ELTESLMKEFVE 430 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~l~~~m~~ 430 (761)
-+-+++++++|...|+.||-.+-..|++++.+.+-. .+..+++-.|-+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 356899999999999999999999999999988764 344555555554
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.64 E-value=12 Score=44.23 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=100.9
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
...+.|+.+-+-+++++++. .++..-|. |+ ...++++.|..-+.++- ...|.-.++---+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 33444555655555555522 11211111 11 12345555555443332 12233344444566666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLC----KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+.++. |+...+..+..+|+ ..+.+++|.-+|+..-+ ..-.+.+|-.+|++.+|..+..+
T Consensus 928 L~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 928 LALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHh
Confidence 66653 55555555554443 45566666555544322 12345667777778877777777
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+..+-.--..+--.|+.-+...|+.-+|-++..+-... ..-.+.-|++...|++|..+...-.
T Consensus 991 l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 991 LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 65321111223366777788888888888888777654 1223445666667777777665543
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=5.9 Score=38.24 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=110.1
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
.+|....++++|...+.+..+ +.+-|..-|. ....++.|.-+.++|.+..- -+..|+--..+|..+|..+
T Consensus 39 vafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCCcc
Confidence 445556667777666655442 1121222221 23445666666666665431 2455777788899999988
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET---G--MKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
-|-..+++.-+. .++-++++|++++++...- + .+--...+..+-..+.+...+++|-..
T Consensus 109 tAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 109 TAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 887777754321 1223444455554443321 1 000112233444556666666666655
Q ss_pred HHHHHh---CC--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 460 FSECLE---KC--RPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-I-GVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 460 ~~~m~~---~~--~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~-~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
|.+-.. .+ -++. ..|-+.|-.|.-..++..|.+.++.-.+.+. . +-+..+...||.+| ..|+.+++.+++.
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 544321 11 1222 2355566667777899999999998544321 1 23567888999888 5677776655543
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.61 E-value=0.27 Score=38.16 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-..|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999999975 556778888889999999999999999999964
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.51 E-value=11 Score=39.55 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESD---NGIPTPAFVYKMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
..++-+|....+++...++.+.|...- +.-...+--...-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355556888888888888888887652 11111222223445556 788888888888866655666777776665
Q ss_pred HHH
Q 004324 410 ELL 412 (761)
Q Consensus 410 ~~~ 412 (761)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.36 E-value=5.3 Score=35.60 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
...+|..+.+.+.......+++.+...+. .+....|.+|..|++... .+..+.+.. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777777888888888888877763 566778888888887643 333344332 1233334456677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA-GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
.+.++++..++..+. - |...++.+... ++++.|.+++.+ .+ +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~----~----~~~Al~~~l~~~~d~~~a~~~~~~---~~----~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDG----N----FKDAIVTLIEHLGNYEKAIEYFVK---QN----NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhc----C----HHHHHHHHHHcccCHHHHHHHHHh---CC----CHHHHHHHHHHHHc
Confidence 777777777666553 1 22223333333 667777776654 12 45566666665543
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.33 E-value=11 Score=41.49 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH-
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR- 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 391 (761)
+-+...-+++|+++|-.|+.... ...|+-.|++.+|.++|.+ .|.. |-.+.+|.....++.|.+++.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 44445556778888887877644 3446667888888888754 3322 222344444444444444432
Q ss_pred -----------HHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHh
Q 004324 392 -----------EMQE--RLGSASVPAYHKIIELLCKAEETELTESLMK------EFVETGMKP---LMPSYINLTNMYLN 449 (761)
Q Consensus 392 -----------~m~~--~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~~p---d~~t~~~li~~~~~ 449 (761)
+--+ +.++-.. +....+...|+.++|..+.. .+.+-+-+. +..+...+..-+-+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 1110 0111111 12333445566666655431 112212121 22333333333334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
...+..|-++|.+|-. -.++++.....+++.+|..+-+...+- .||+ |.-...-++...+++||.+.
T Consensus 760 l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dV--y~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDV--YMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred ccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc---cccc--cchHHHHhhhhhhHHHHHHH
Confidence 4555666666666532 124456666667777777776666552 3443 22223445666677777777
Q ss_pred HHHH
Q 004324 530 YDLM 533 (761)
Q Consensus 530 ~~~m 533 (761)
|.+.
T Consensus 827 fhkA 830 (1081)
T KOG1538|consen 827 FHKA 830 (1081)
T ss_pred HHHh
Confidence 7665
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.28 E-value=13 Score=39.39 Aligned_cols=388 Identities=13% Similarity=0.112 Sum_probs=219.8
Q ss_pred HHHhccCChhHHHHHHHHHHHc--CC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CC
Q 004324 152 VHCMRIRENETGFRVYEWMMQQ--HW-----------YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRV----PS 214 (761)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~m~~~--~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~----pd 214 (761)
+.+-+.+.+..|.+.+..-..+ +. .-++...-+..++.+.+.|++.+++.++++|..+=++ -|
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 3677899999999988777655 21 1234455677888999999999999999998765333 58
Q ss_pred HHHHHHHHHHHhcC----C-CC-------CCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHcCCCCCchhhHH
Q 004324 215 EMTFHILIVAYLSA----P-VQ-------GCLDEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (761)
Q Consensus 215 ~~~~~~li~~~~~~----~-~~-------g~~~~A~~l~~~m~~~~-----g~~p~~~t~~~ll~~~~~~~g~~~~g~~~ 277 (761)
+.+||.++-.+.++ - .. ..++.++-...+|...+ .+.|....+..++.-..-... .++.
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~----e~l~ 242 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK----ERLP 242 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH----hhcc
Confidence 88888866555521 0 00 11222233333333211 244555555555444333211 1333
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHHHHH
Q 004324 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE----GKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
--.++++.....-+.|+.+..-.-+. ....+ +.+++..+-+.+....+.+ =..+|..++..+.+.++...|.+
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~-~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLK-QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHH-HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444444445555666544332221 11222 3445544444433322111 24578889999999999999999
Q ss_pred HHHHHHhCCCCCCHH-----HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHhcCC-HH
Q 004324 354 TWLRLLESDNGIPTP-----AFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVP-AYHKII---ELLCKAEE-TE 419 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~-----~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li---~~~~~~g~-~~ 419 (761)
.+.-+.-..+...+. +-.++.+..|. .-+...=+.++.+.....+ |.. .-..|+ .-+-+.|. -+
T Consensus 320 ~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 320 YLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccH
Confidence 998777655332110 01123333331 1233344556666655432 211 112233 23555565 78
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHh-CCCC----CHHHHHHHHHH--HHhcC
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLT----NMYLNL---GMHDRLHLAFSECLE-KCRP----NRTIYGIYLES--LKNAG 485 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li----~~~~~~---g~~~~a~~~~~~m~~-~~~p----~~~~~~~li~~--~~~~g 485 (761)
+|+++++...+-- .-|...-|.+. .+|... ..+.+-..+-+-+.+ |+.| +...-|.|-++ +-..|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8999999988732 22433333332 233322 334445555454555 6655 34455666554 45679
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHH-HHHHHHhhhhh
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWME-KLDYVLSLNRK 557 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~~~~~~~l~~~ 557 (761)
++.++.-.-.-..+ |.|...+|..+.-.+....++++|.+++..+. |+.++.+ +...++.++.+
T Consensus 477 ey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 477 EYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSKVQKALALCQK 541 (549)
T ss_pred cHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHHHHHHHHHHHH
Confidence 99998866665555 77999999999988889999999999999775 5555543 23445555443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.19 E-value=0.44 Score=50.41 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN-R---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
+...++.+..+|.+.|++++|...|++.++. .|+ . .+|..+..+|.+.|++++|++.+++..+.+ .| .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch---hHH
Confidence 4678889999999999999999999987763 344 3 458999999999999999999999988853 11 232
Q ss_pred HHHH--HHHhCCCHHHHHHHHHHHHHcCCcc
Q 004324 512 IILS--AYLSSGDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 512 ~li~--~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (761)
.+.. .+..-.+..+..++++.+.+-|...
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 2211 1122234456777788777766543
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.13 E-value=12 Score=38.70 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (761)
.+.+..|.-|...|....|.++-.+. . .|+-.-|-..|.+|++.++|++-.++-.. + -..+-|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 35566778888899998888886554 2 36888999999999999999987776432 2 2448899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+.|+..+|..+... .++..-+.+|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988876 2235678899999999999765443
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.11 E-value=13 Score=39.02 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=106.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLG---SASVPAYHKIIELLCK---AEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
.++-.|-...+++...++++.|...-. .-....--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455569999999999999999986511 1011111122335556 8999999999999777666788889988887
Q ss_pred HHHhc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH----HHhhhCCCCC--CC
Q 004324 446 MYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE----KAEEIF----NHMHSDQTIG--VN 506 (761)
Q Consensus 446 ~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~----~~m~~~g~~~--p~ 506 (761)
.|-.. ..+++|...|.+.-+ ..||..+--.+...+...|.-. +..++- ....++|... .|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 76542 236667777766543 2355444444444455555322 233332 2222333222 35
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
---+.+++.++.-.|++++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 556678999999999999999999999953
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.05 E-value=2.6 Score=44.85 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
+...++.+..+|.+.|++++|...|+..++..+.... .+|..+..+|.+.|+.++|++.|++..+.+ . ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHHHH
Confidence 5677888899999999999999999998887654221 458889999999999999999999888751 1 112211
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHcCC
Q 004324 409 IE--LLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 409 i~--~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
.. .+....+..+..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 11122233455566666666553
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.79 E-value=15 Score=38.89 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 190 MGKERKFAKCRDIFDDIINQGRV-P----SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (761)
Q Consensus 190 ~~~~g~~~~A~~~f~~m~~~g~~-p----d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~ 264 (761)
+-+.+++.+|.++|.++-+.--. | ..+.-+.+|++|. ..+.+.-...+....+..|-. .|-.+..++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff----l~nld~Me~~l~~l~~~~~~s----~~l~LF~~L 87 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF----LNNLDLMEKQLMELRQQFGKS----AYLPLFKAL 87 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH----HhhHHHHHHHHHHHHHhcCCc----hHHHHHHHH
Confidence 34667777777777776543111 1 1344567888887 577777777777776653322 333333332
Q ss_pred HcCCCCCchhhHHHHHHHHHHHHHc--CCC-cCH---------HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC----C
Q 004324 265 VSKPGGLSKYYLQQAEFIFHNLLTS--GLE-IQK---------DIYSGLIWLHSYQDNIDKERISLLKKEMQQAG----F 328 (761)
Q Consensus 265 ~~~~g~~~~g~~~~A~~~~~~m~~~--~~~-p~~---------~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g----~ 328 (761)
..-. .+.+.+|.+.+...... +.. |.. +.+-..+.+++....|++.++..++++|...= .
T Consensus 88 ~~Y~----~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 88 VAYK----QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHH----hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 2111 14777777777665443 222 211 11112233456666777777766666655432 2
Q ss_pred CCCHHHHHHHHHHHHh
Q 004324 329 EEGKEVLLSVLRVCAK 344 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~ 344 (761)
.-+..+|+.++-.+++
T Consensus 164 ~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSR 179 (549)
T ss_pred cccHHHHHHHHHHHhH
Confidence 3566666665555544
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.35 E-value=0.1 Score=33.55 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=26.0
Q ss_pred hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 598 FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
++++|+++.+|..++.+|...|++++|.
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6789999999999999999999999886
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.25 E-value=9.6 Score=41.97 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHhcC-CCCCC
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-RVP-----SEMTFHILIVAYLSA-PVQGC 233 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p-----d~~~~~~li~~~~~~-~~~g~ 233 (761)
.-+..+|..++.- +||. ...+++..+=.|+-+.+++.+.+-.+.+ +.- -...|+.++..++.. .....
T Consensus 174 ~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 174 YFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 3456677777765 5554 3567888888899999999988876643 221 124577777777631 01567
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~ 287 (761)
.+.|.+++..+.+. -|+...|...-.-+.+.. |++++|.+.|+...
T Consensus 249 ~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~-----g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 249 LEEAEELLEEMLKR---YPNSALFLFFEGRLERLK-----GNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHhc
Confidence 88999999999875 489888877766666655 58999999998765
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.24 E-value=15 Score=37.41 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~ 534 (761)
.+.+.+++++|.++|+--.
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456788888888877544
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.19 E-value=7.2 Score=33.81 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
++.+.+.|+-+.-.+++.++.+. -.++....-.+..||.+.|+..++.+++++.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44444444444444444444321 12333344444445555555555555554444444
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.18 E-value=13 Score=36.54 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKR 591 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 591 (761)
.+..-|.+.|.+..|..-+++|++. +.-.+.+ .-..-.|..++...|..++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~----------------------------~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV----------------------------REALARLEEAYYALGLTDE 222 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccch----------------------------HHHHHHHHHHHHHhCChHH
Confidence 3456688899999999999999874 5444443 2223335556777788888
Q ss_pred HHHHHH-hhccccch
Q 004324 592 KRHMIR-FQFNENSR 605 (761)
Q Consensus 592 a~~~~~-~~l~p~~~ 605 (761)
|....+ ++.++.+.
T Consensus 223 a~~~~~vl~~N~p~s 237 (254)
T COG4105 223 AKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhcCCCC
Confidence 888877 66665554
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=91.98 E-value=5 Score=36.50 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=43.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
-..|++++|+.+|.-+...++- +..-|..|..++-..+++++|...|...-..+. -|...+-.+-.+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655554432 344445555555555666666666554433221 12222333445555556666666
Q ss_pred HHHHHHHH
Q 004324 423 SLMKEFVE 430 (761)
Q Consensus 423 ~l~~~m~~ 430 (761)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555554
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=91.91 E-value=4.7 Score=36.65 Aligned_cols=89 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~ 524 (761)
.-+...|++++|..+|.-+..--.-|..-|..|..+|-..+++++|...|......+ .-|...+-..-.+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 335567899999999988775334556667788888888899999999988765543 124455566677888899999
Q ss_pred HHHHHHHHHHH
Q 004324 525 KAEKIYDLMCL 535 (761)
Q Consensus 525 ~A~~~~~~m~~ 535 (761)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998886
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.62 E-value=6.4 Score=42.77 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
..-.+.++.-+-+.|..+.|+.+-..-..+ ..-..+.|+++.|.++.++ .++...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 344566666666667666666665432221 2333456666666655432 2355567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
..+.|+++-|.+.|.+.. -|..|.-.|.-.|+.+.-.++-+....+| -++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHH
Confidence 777777777777666643 24555566666777766666666666665 144445555556777766
Q ss_pred HHHHHH
Q 004324 527 EKIYDL 532 (761)
Q Consensus 527 ~~~~~~ 532 (761)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=16 Score=36.50 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (761)
.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 34556788888888888888876544 3455667788888899999999998887654
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=4.8 Score=41.89 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|.-+|.+.+.+..|++.-+..++--++|+...---..+|...|+++.|+..|+++.+
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3333444444444444444444433344444444444555555666666666666555
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=6.4 Score=41.01 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=54.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQER-----LGSA---------SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
-+.|.|.|++..|..-|+..... +..+ -..+++-|..+|.+.+++.+|++.-...+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 36777778888887777765432 1111 01234444445555555555555555555543 344444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
.--=..+|...|.++.|+..|+++.+--+-|..+-+-|+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44445555555555555555555554333333333333333
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.68 E-value=2.6 Score=42.18 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 545 (761)
..++..++..+..+|+.+.+...+++..... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|.|.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4567778888888889999999988888875 45788899999999999999998888888765 3666666654
Q ss_pred HHHHHH
Q 004324 546 EKLDYV 551 (761)
Q Consensus 546 ~~~~~~ 551 (761)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444444
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.57 E-value=4.2 Score=35.03 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=67.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHhCCCH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG--VNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--p~~~t~~~li~~~~~~g~~ 523 (761)
+.+..|+++.|++.|.+.+.-++.+...||.-..+|--.|+.++|++=+++..+..+-+ .-..+|.---..|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 46677888888888888887777888899999999999999999998888877642111 1122344444457778888
Q ss_pred HHHHHHHHHHHHcC
Q 004324 524 VKAEKIYDLMCLKK 537 (761)
Q Consensus 524 ~~A~~~~~~m~~~g 537 (761)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877655
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.26 E-value=30 Score=37.36 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNI 512 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~ 512 (761)
..+-.-|..++-+.|+.++|.+.|.+|.+..+. +......||.+|...+.+.++..++.+-.+.. -|. ..+|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~--lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS--LPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc--CCchHHHHHHH
Confidence 333345566666889999999999999863333 45578889999999999999999999876543 233 456776
Q ss_pred HHHHHHhCC
Q 004324 513 ILSAYLSSG 521 (761)
Q Consensus 513 li~~~~~~g 521 (761)
.+-.+...|
T Consensus 337 ALLkaRav~ 345 (539)
T PF04184_consen 337 ALLKARAVG 345 (539)
T ss_pred HHHHHHhhc
Confidence 664444343
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.06 E-value=14 Score=40.70 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=80.0
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-----ALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIV 223 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~ 223 (761)
..+-.|+=+.|++.+....+.+.+.... ..|...+..++- ....+.|.++++.+.++ -|+..-|...-.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4455688899999999888766343222 223333333332 45678999999999986 689888887777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC
Q 004324 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQ---PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (761)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~---p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 290 (761)
-+.. ..|++++|++.|++......-. .....|-.....+.. +++++|...|..+.+.+
T Consensus 275 R~~~--~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-------~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 275 RLER--LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-------HDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHH--HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-------chHHHHHHHHHHHHhcc
Confidence 6665 6899999999999765310011 112223333322222 26777777777776543
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.68 E-value=7.6 Score=33.55 Aligned_cols=56 Identities=20% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-+++..|+++.|++.|.+...- .+-+...||.-..++.-.|+.++|++=+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3678899999999999999886 5668899999999999999999999999998863
No 248
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=30 Score=36.31 Aligned_cols=236 Identities=9% Similarity=-0.052 Sum_probs=107.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCCCCH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-~~~~li~~~~~~~~~g~~ 234 (761)
+..++..|+..+...++.. +.++..|.--...|.-.|++++|.-=.+.-.+. .|+.. .+.-.-.++. ..+..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~---a~~~~ 133 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHL---ALSDL 133 (486)
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhh---hhHHH
Confidence 5566777888888887764 445555655555566666666665444333221 11110 1111111111 12222
Q ss_pred HHHHHHHH---------------HHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 235 DEACSIYN---------------RMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 235 ~~A~~l~~---------------~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
.+|.+.|+ ......--+|...+|-.+=.-|.-.. |+.++|.++-..+++.+. ...+.
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~-----~~~~~a~~ea~~ilkld~---~n~~a 205 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL-----GDYDEAQSEAIDILKLDA---TNAEA 205 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc-----ccchhHHHHHHHHHhccc---chhHH
Confidence 22322222 11111011244445544444444333 366666666655555442 24455
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.++...++--.++.+.+...|++-++. .|+...-. ..-...+.++.+.+.| +...+
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk----------~~~~~~k~le~~k~~g------------N~~fk 261 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK----------SASMMPKKLEVKKERG------------NDAFK 261 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH----------hHhhhHHHHHHHHhhh------------hhHhh
Confidence 555555555566667777776665543 33332211 1111122222233322 23345
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.|++..|.+.+.+.+.. .+.|+...|--...+..+.|+.++|+.--++..+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 56666666666555432 2333344444444445555555555555444443
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.38 E-value=20 Score=34.10 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=141.1
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666665432 13567788889999999999999999888752 23345566777778888888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 423 SLMKEFVETGMKPLMPSYINLTN-MYLNLGMHDRLHLAFSECLEKCRP----NRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 423 ~l~~~m~~~g~~pd~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
..+.........+ ......... .+...|+++.|...+..... ..| ....+......+...++.++|...+.+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988855444 222223333 78999999999999999876 333 4455555556678889999999999999
Q ss_pred hhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 498 HSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 498 ~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.... +. ....+..+-..+...+++++|...+.....
T Consensus 194 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 8873 34 468888889999999999999999999985
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.28 E-value=18 Score=33.30 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (761)
.+.++.+.+.|++|+...|..+|..+.+.|+.. .+..+...++-+|.......+-.+.. ....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556667778888888888888888888754 34555666666665555544433322 223344444444421
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
. ...+..++..+...|++-+|+++.+...... ...-..++.+-.+.++...=..+|+-..++
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 1256677788888899999998887754332 122244577777777765555555554443
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.98 E-value=6.3 Score=38.88 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 416 EETELTESLMKEFVETGMK--PLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
|++..|...|...++..-. -....+-.|...+...|+.++|..+|..+.+ ..+.-....--|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 3444555555444443200 0112333344444444444444444444443 1122233344444444455555555
Q ss_pred HHHHHHhhhC
Q 004324 491 EEIFNHMHSD 500 (761)
Q Consensus 491 ~~l~~~m~~~ 500 (761)
..+|++..++
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 252
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=88.85 E-value=27 Score=34.94 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~ 267 (761)
.+..++-+|+-|-. -...++....-|-...+ |+.++...--+++.++.-.
T Consensus 110 ~~qvf~KliRRyky--LeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~ 159 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKY--LEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLS 159 (412)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHh
Confidence 45556666665542 12333333332333333 5666666666666665543
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.59 E-value=36 Score=36.06 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=100.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK---AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
+-..|.-..+-++....|+..... ...--+++.+=+. .|+++.-.+++-.-+. --..+|..+++.-.+
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r 409 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLR 409 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHH
Confidence 345556667777777777766542 2221223322222 2335333333322221 235678889998888
Q ss_pred cCCHHHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHHhCCCHHHH
Q 004324 450 LGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC-NIILSAYLSSGDFVKA 526 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~-~~li~~~~~~g~~~~A 526 (761)
..-++.|+.+|.++.+ + ..+++..++++|.-++. |+...|.++|+-=..+ + ||...| +-.+.-+..-++-+.|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-PDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-CCchHHHHHHHHHHHHhCcHHHH
Confidence 8889999999999987 5 67899999999998886 7888999999875554 2 454443 4566677788888899
Q ss_pred HHHHHHHHH
Q 004324 527 EKIYDLMCL 535 (761)
Q Consensus 527 ~~~~~~m~~ 535 (761)
..+|+.-++
T Consensus 486 raLFetsv~ 494 (660)
T COG5107 486 RALFETSVE 494 (660)
T ss_pred HHHHHHhHH
Confidence 999885543
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.58 E-value=7.4 Score=42.30 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (761)
.++++.+.++.+.=.-..-.| ..-.+.++.-+-+.|..+.|.++-..- ..-.+...++|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHH
Confidence 456666655553111001112 444778888888899999888875332 1224566788899888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
-++. .+...|..|-....+.|+++.|.+.|.+..+ |..|+-.|.-.|+.+...++-+.....-.
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 6543 3667899999999999999999888877543 55677778888888777777666554211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+|....++...|++++..+++.+-
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555556667777777776543
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.57 E-value=4.7 Score=40.37 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~~t~~~ 512 (761)
.++..++..+..+|+.+.+...++.+..--+-+...|..+|.+|.+.|+...|+..|+++.+ .| +.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHHH
Confidence 45666777777777777777777777765667788888888888888888888888877655 45 7787777766
Q ss_pred HHHH
Q 004324 513 ILSA 516 (761)
Q Consensus 513 li~~ 516 (761)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.27 E-value=21 Score=32.84 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 318 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
+..+.+.+.|+.|+...+..+|..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444445555555555555555555555443
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.80 E-value=32 Score=34.96 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=98.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT----NMYLNLGMHD 454 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li----~~~~~~g~~~ 454 (761)
-.|+..+|-..++++.+. .+-|..+++-.=.+|.-+|+.+.-...++++... ..||...|..+= -++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356677777777777764 5667777777777888888887777777777653 134443333332 2334678888
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT--IGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+|.+.-++..+-.+.|.-.-.++...+-..|+..++.++..+-...-. --.-..-|-...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888877777664456666667777777788888888887665443210 000011222333345566888888888876
Q ss_pred HHHcC
Q 004324 533 MCLKK 537 (761)
Q Consensus 533 m~~~g 537 (761)
=+-+.
T Consensus 273 ei~k~ 277 (491)
T KOG2610|consen 273 EIWKR 277 (491)
T ss_pred HHHHH
Confidence 54333
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.14 E-value=11 Score=33.46 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=45.8
Q ss_pred hhccCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 306 SYQDNIDKERISLLKKEMQQAGF--EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
...+.|++++|.+.|+.+..+-. .-...+--.++.+|.+.+++++|...+++.++..+.-.-+-|...+.+++.-
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34456677777777777766521 1123444567777777777777777777777776553344455555555543
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.06 E-value=2.3 Score=29.04 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555544
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=86.75 E-value=50 Score=35.57 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 383 FMKSLEIFREMQE-RLGSAS-VPAYHKIIELLCK---------AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 383 ~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+.|+.+|.+... ..+.|+ ...|..+-.++.. .....+|.++-+...+.+ .-|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567777777662 123343 2333333322221 234556777777777765 557777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
+++.|..+|++...-.+....+|....-.+.-+|+.++|.+.+++..+....+--.......|+.|+.++ .++|++++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8999999999887644555666666666677789999999999987665412222233334445666655 567777665
Q ss_pred HHH
Q 004324 532 LMC 534 (761)
Q Consensus 532 ~m~ 534 (761)
+=.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 443
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.00 E-value=18 Score=36.69 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=66.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHH--HHHHHcCChHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKM--EAYAKIGEFMK 385 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li--~~~~~~g~~~~ 385 (761)
.+|...+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++.-. +......+|..=| -++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 455666666666666653 4446666666667777777777777666666654 3222233333222 23335677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
|.+.-++..+-+ +-|..+-.++...+--+|+..++.+++.+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 776666554432 12444445555666666666666665443
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=85.95 E-value=9.6 Score=40.76 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCCCCHHH
Q 004324 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIVAYLSAPVQGCLDE 236 (761)
Q Consensus 158 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~~~~~~~~~g~~~~ 236 (761)
....+|.++-+..++.+ +.|......+..+++-.|+++.|..+|++-...+. .++...|..++..++ |+.++
T Consensus 318 ~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-----G~~~~ 390 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN-----EKIEE 390 (458)
T ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----CCHHH
Confidence 34566788888888887 66888888888888888899999999999887532 234566777777775 99999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH
Q 004324 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (761)
Q Consensus 237 A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m 286 (761)
|.+.+++..+....+.-.......|..|+.. .++.|..++-+-
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 433 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPN-------PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCC-------chhhhHHHHhhc
Confidence 9999999766433333344445555567765 688888887543
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.92 E-value=16 Score=36.12 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSAS-VPAYHKII 409 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~t~~~li 409 (761)
.|+.-+.. .+.|++..|...|...++..+. -....+-.|...+...|++++|..+|..+.+. +-.|- ..++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 2344466666666555554322 11122333555555555555555555555432 11111 13333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004324 410 ELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~ 430 (761)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555555555544
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.69 E-value=2.9 Score=28.53 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
++..+...|...|++++|.++|+++++..+-|...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344455555555555555555555555444444444433
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=42 Score=33.71 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=88.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 453 (761)
.......|+..+|..+|.......- -+...--.++.+|...|+.+.|..++..+-..--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3455677888888888888765421 134445567788888899999988888765432222222222223334343333
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~ 524 (761)
.+...+-...-. .+-|...--.+...|...|+.++|.+.+-.+..++.---|...-..|+..+.--|..+
T Consensus 220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 333333333321 2337777777888888888888888877776665322224445555666665555433
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.45 E-value=1.9 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888855
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.10 E-value=13 Score=34.70 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.+..+.+.|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556667777777777777777776665433332 2345566666666666666665555443
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.52 E-value=43 Score=32.91 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGF--EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 378 (761)
+.|++++|.+.|+.+..+-. .-...+.-.++.++-+.+++++|....++..+.-+.....-|..-|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34445555555554443311 11233344444555555555555555555555433322233333344433
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.10 E-value=2.2 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888843
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.37 E-value=24 Score=32.93 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHH--H
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYG--I 476 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~--~ 476 (761)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+... ....|...-| .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3567788888888899999888888888654444 34567778888888888888877777654 1111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhh
Q 004324 477 YLE--SLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 477 li~--~~~~~g~~~~A~~l~~~m~~ 499 (761)
... .+...|++.+|-++|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12235677777777766543
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.90 E-value=8.9 Score=31.20 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+.++.++..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44445555555566666666666666666666666666666666544433444555443
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.72 E-value=51 Score=34.00 Aligned_cols=132 Identities=16% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC----CCCHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVE-TGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLE--KC----RPNRTI 473 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~p~~~~ 473 (761)
+|..+-.++-+.-++.+++.+-+.-.. .|..|. -....++..+....+.++++++.|+...+ .- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433332 232221 12334456666667778888888887764 11 123457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-C------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGV-N------TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~p-~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|-.|-..|.+..++++|.-+..+..+-- .+.. | ..+...|.-++...|....|.+.-++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8888888888888888776665543310 0110 1 11233455577788888888777776653
No 273
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.59 E-value=32 Score=39.43 Aligned_cols=217 Identities=13% Similarity=0.099 Sum_probs=93.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc---CChH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKI---GEFM 384 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~---g~~~ 384 (761)
-.|+++.|.+.+-+ ..+...|.+.+...+.-|.-.+-..... ..+..... .|...-+..||..|++. .+..
T Consensus 270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 36779999988876 2334446666666555544322222211 33332211 11124577889999884 5677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC---------------CCC-CHHHHH---HHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIEL-LCKAEETELTESLMKEFVETG---------------MKP-LMPSYI---NLT 444 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g---------------~~p-d~~t~~---~li 444 (761)
+|++.|--+....-+.....+...+.- ....+++ ..++..+...| +.. +..... ...
T Consensus 345 ~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref---~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 345 EALQYLYLICLFKDPEQRNLFHECLRELVLETREF---DLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp HHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--H---HHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCH---HHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 888888776554221112222222221 1222211 12222211111 221 222222 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCCC----C-CCCH
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE-SLKNAGN-----------IEKAEEIFNHMHSDQT----I-GVNT 507 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~-~~~~~g~-----------~~~A~~l~~~m~~~g~----~-~p~~ 507 (761)
.-+...|++++|..+|.-..+ ...-....|.++. ..+.... ...|.++.+.....+. + +.+.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~-~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEE-YDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 345567888888887776542 0001122233222 2222222 4456655555444321 1 1234
Q ss_pred HHHHHHHH-----HHHhCCCHHHHHHHHHHHH
Q 004324 508 RSCNIILS-----AYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 508 ~t~~~li~-----~~~~~g~~~~A~~~~~~m~ 534 (761)
.|+..|+. .+.+.|++++|++.++++.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 56666655 3468999999999888874
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.88 E-value=2.1 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+-|..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665554
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.76 E-value=90 Score=33.89 Aligned_cols=172 Identities=19% Similarity=0.172 Sum_probs=120.3
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..+.++..+.-++.+..+|...| .+...|-.++.+|... .-+.-..+|+++.+..+. |++.-.-|..-|-+ ++..
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchh
Confidence 56667777777788888888765 3677888999999888 556777888888887764 44444556666655 8888
Q ss_pred HHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 385 KSLEIFREMQERLGSA-----SVPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
.+...|.+...+=++. =...|..|+.-- ..+.+..+.+...+.. .|..--.+.+.-+-.-|....++.+|.+
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~ 226 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIR 226 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHH
Confidence 8999998887653321 112455555321 3456667777777665 4555556777777788888999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 459 AFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
++..+.+....|+-+-..+|.-+..
T Consensus 227 Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 227 ILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHH
Confidence 9998887666677666666665544
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.48 E-value=75 Score=32.84 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---H
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESD--NG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-RLGSAS---V 402 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~ 402 (761)
-.+|..+..+.++.|.++++...--.-...- .. .-...|-.+-.++-+.-++.+++.+-..-.. .|..|. -
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 3466677778888888887765322111110 00 0123444455555555555555554433221 222221 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGM-K----PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRT 472 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~----pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~ 472 (761)
..-.+|-.++.-.+.++++++.|+...+--- . .....+..|-..|....+.++|.-+..+..+ ++..-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 1223455677777789999999988776211 1 1246788899999999999998877766543 2222223
Q ss_pred HHHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 473 IYGI-----YLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 473 ~~~~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
-|.. |.-+|-..|++.+|.+..++..+ .|.-..-.....++.+-|...|+.+.|..-|+...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3333 34567788998888888877543 45111123344567788889999999988777665
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.44 E-value=25 Score=31.21 Aligned_cols=89 Identities=12% Similarity=-0.125 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC
Q 004324 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG 331 (761)
Q Consensus 252 p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~ 331 (761)
|....|+.-..++-+ |++++|.+.|+.+..+-....-..-.-|-+++++-+.+++++|...+++.++....--
T Consensus 9 ~~~~ly~~a~~~l~~-------~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQK-------GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 455667777777665 4999999999999887765554555566677999999999999999999988753333
Q ss_pred HHHHHHHHHHHHhcCC
Q 004324 332 KEVLLSVLRVCAKEGD 347 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~ 347 (761)
.+-|...+.+++.-..
T Consensus 82 ~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQ 97 (142)
T ss_pred CccHHHHHHHHHHHHH
Confidence 3556666666554433
No 278
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=80.18 E-value=4.8 Score=31.50 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHhhcCCceeEe---ecCcEEEEEEeCCCHHHHHHhh
Q 004324 671 VSSEGIALVFKTLKARSLDCRVK---KKGRVFWIGFLGSNSTLFWKLI 715 (761)
Q Consensus 671 g~~~e~~~l~~~m~~~gl~~~~~---~~~~~~~i~i~~~~~~~~~~li 715 (761)
.+.+-+..+...+.+.|+.+++. ..+..|++.|.+++...|.+.|
T Consensus 29 ~s~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~~~~~~f~~~I 76 (77)
T PF14528_consen 29 KSKELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISGKSLKRFLEKI 76 (77)
T ss_dssp S-HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEECHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECchHHHHHHHHh
Confidence 45555666666668899999997 4455799999998888887765
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.76 E-value=73 Score=32.28 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 370 FVYKMEAYAKIGEFM---KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 370 ~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
...++.+|...+..+ +|.++++.+...... ....|-.-+..+.+.++.+++.+.+.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 334455555544432 344444444322111 1223333344444455555566666665553
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.02 E-value=1.2e+02 Score=34.32 Aligned_cols=183 Identities=16% Similarity=0.074 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-YQDNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEG 346 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~g~~~~a~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~g 346 (761)
....|...++...+.|..-...-. ..+...+ +....+.+.|+.+|+...+ .| +.....-+-.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~-g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYAL-GICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHH-HHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 467899999998888854322222 2333344 6778899999999998877 45 3335556666666643
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCH
Q 004324 347 -----DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK-IGEFMKSLEIFREMQERLGSASVPAYHKIIELL--CKAEET 418 (761)
Q Consensus 347 -----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~ 418 (761)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|...-..|..+ ..-+-+++--. ....+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCH
Confidence 66779999998888885 344333322222222 246789999999998887542 22222222211 123478
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 419 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
..|..++++..+.| .|-..--...+..+.. +..+.+.-.+..+.+
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 88999999988888 3332222233333443 666666555555554
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.90 E-value=48 Score=32.10 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
-|..|...|++..|-+....+-+-...+..-+..-|..|-+ |-++|..=.... .-...+.-+..--+..|+
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~------Aae~yk~ees~s---sANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ------AAEYYKGEESVS---SANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH------HHHHHcchhhhh---hHHHHHHHHHHHHHHHHH
Confidence 34556667777766665555544334444444444443333 223332211110 011112222222345677
Q ss_pred HHHHHHHHHHHHHc
Q 004324 523 FVKAEKIYDLMCLK 536 (761)
Q Consensus 523 ~~~A~~~~~~m~~~ 536 (761)
+.+|+++|++....
T Consensus 170 Y~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 170 YSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887653
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.86 E-value=18 Score=36.43 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
++++++.++..=++-|+-||.++++.||+.+.+.++..+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555444444
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.75 E-value=11 Score=38.22 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=51.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~ 524 (761)
+-|.+.|.+++|...+..-..-.+-|.++|..-..+|.+..++..|+.=.+.....+ ...+.+|++.|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHHHHH
Confidence 457777788888777776654334477777777777777777777766666655432 12356666665555
Q ss_pred HHHHHHHHHH
Q 004324 525 KAEKIYDLMC 534 (761)
Q Consensus 525 ~A~~~~~~m~ 534 (761)
+++....+..
T Consensus 176 ~~Lg~~~EAK 185 (536)
T KOG4648|consen 176 ESLGNNMEAK 185 (536)
T ss_pred HHHhhHHHHH
Confidence 5554444443
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.72 E-value=90 Score=32.69 Aligned_cols=309 Identities=11% Similarity=-0.004 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH
Q 004324 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (761)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~ 277 (761)
.+.+.|..-++. ..|-+|-.|+... -.|+-..|.++-.+-.+. +.-|..-.--+|.+-.... .|+.+
T Consensus 71 t~~Ryfr~rKRd------rgyqALStGliAa-gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~----eG~~~ 137 (531)
T COG3898 71 TARRYFRERKRD------RGYQALSTGLIAA-GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALL----EGDYE 137 (531)
T ss_pred HHHHHHHHHHhh------hHHHHHhhhhhhh-ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHh----cCchH
Confidence 445555554432 3455555554422 357888887777666543 5556555555555533322 16888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 004324 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWL 356 (761)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 356 (761)
.|.+-|+.|... |.......--+.....+.|+.+.|..+-++.-.. .|. .....+++...|..|+|+.|.++.+
T Consensus 138 ~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 138 DARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 888888888642 2211111111112345667777776666655433 332 4567788888888888888888887
Q ss_pred HHHhCC-CCCCHHH--HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 357 RLLESD-NGIPTPA--FVYKMEAYAK---IGEFMKSLEIFREMQERLGSASVPAY-HKIIELLCKAEETELTESLMKEFV 429 (761)
Q Consensus 357 ~m~~~g-~~~~~~~--~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~l~~~m~ 429 (761)
.-.... +.+++.- -..|+.+-.. .-+...|...-.+- ..+.||.+-- -.-..++.+.|++.++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 765543 2333321 2223322221 12333444433332 2345665432 233467888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 430 ETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 430 ~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
+..-.|++. ++..+.+.|+. +..-++...+ .. +.|..+--.+..+-...|++..|..--+..... .|.
T Consensus 291 K~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---~pr 361 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---APR 361 (531)
T ss_pred hcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---Cch
Confidence 876556532 22334455542 2222232222 23 344556666777777788888877766666553 477
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Q 004324 507 TRSCNIILSAYLSS-GDFVKAEKIYDLMCL 535 (761)
Q Consensus 507 ~~t~~~li~~~~~~-g~~~~A~~~~~~m~~ 535 (761)
...|..|.+.-... |+-.++...+-+...
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 77777776655444 888888888877764
No 285
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.68 E-value=1.4e+02 Score=34.21 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
-|.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.++-+.+. .+.-|.-.+..|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACL 755 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHH
Confidence 344445555666677777766654433 4666667666777777777776666555443 2444555667777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+.|+.++|.+++.+.... . -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l------~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL------Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh------H----HHHHHHHHhccHHHHHHHHHH
Confidence 777777777776554321 1 345667777777777665444
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.42 E-value=16 Score=36.74 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=64.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004324 326 AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD---NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV 402 (761)
Q Consensus 326 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 402 (761)
.|......+...++..-....+++.+...+-++...- ..|+...| +.+. ++-.-+.++++.++..=...|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 3444455555555555556666777776666655431 11222111 1222 22333566777777777778888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
++++.+|+.+.+.+++.+|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888877777776644
No 287
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.87 E-value=82 Score=31.71 Aligned_cols=113 Identities=7% Similarity=0.143 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 383 FMKSLEIFREMQE-RLGSASVPAYHKIIELLCKA-E-ETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 383 ~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~-g-~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+.+|+++|+...- ..+--|......+++..... + ....-.++.+.+.. .|-.++..+...+|..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666652211 12333555555555555441 1 22233344444443 3456677777778888888888888888
Q ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 459 AFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 459 ~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (761)
+++.... +...|...|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8777764 355677788888888888887765555544
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.86 E-value=6 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555553
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.82 E-value=9.2 Score=31.49 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
..+-+..+....+.|+.....+.+.+|.+.+++..|.++|+.+..++.+....|..++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3444444444556666666666666666666666666666666543333333555444
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.67 E-value=6.3 Score=24.79 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777777788888888887777663
No 291
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=76.26 E-value=1.3e+02 Score=33.35 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 004324 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEAC 238 (761)
Q Consensus 159 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~ 238 (761)
+.+.+..+++.+... +|.-...|-.....=.+.|..+.+.++|++-.. |+.-++.-|...+.-++. ..|+.+...
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n--~~~d~~~lr 134 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN--NNGDPETLR 134 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc--cCCCHHHHH
Confidence 345556666666654 454555666666666677777777777777655 344466667776666664 567777777
Q ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHH
Q 004324 239 SIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT 288 (761)
Q Consensus 239 ~l~~~m~~~~g~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~ 288 (761)
.+|+.....-|..- ....|-..|.--.. + +++.....+++++++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~-q-----ks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENG-Q-----KSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhc-c-----ccHHHHHHHHHHHHh
Confidence 77777666433322 12223333332211 1 255555566655543
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.01 E-value=6.2 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555555555555555555544
No 293
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.00 E-value=52 Score=31.49 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 475 GIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+.-|+.+.+.+.+.+|+...++-++.+ +.|..+-..++..||-.|+|++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344555666666666666666655553 3445555566666677777777665555443
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.63 E-value=87 Score=30.91 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=41.6
Q ss_pred HcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHH
Q 004324 288 TSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV---LLSVLRVCAKEGDVEDAEKTWLRLL 359 (761)
Q Consensus 288 ~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~ 359 (761)
..+..||++.-+-.....+.... ++++|+.-|.+..+..-+-...- .--+|..+.+.|++++..+.+.+|.
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~-~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKED-EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCCCCCcchHhhhhcccccccc-CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566777776655433443333 67788877777665432222222 3356666777777777766666554
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.33 E-value=18 Score=29.45 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKME 375 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~ 375 (761)
=++.+-++.+....+.|+..+..+.++||-+.+++..|.++|+-++.+ |. +...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 344455566666778899999999999999999999999999877743 32 3445665543
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.76 E-value=7.4 Score=25.68 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999999874
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.65 E-value=74 Score=36.69 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=120.2
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA----KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
.++...+..|..+-+ ..+. |..+...+...|+ +.|++++|..-+-+-... ++| ..+|.-|....+
T Consensus 344 L~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 344444555554432 2232 4445555555544 678888888766544332 122 235777777788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+.+--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-- .|.. ..-....+..|.+.+-+++|..+-..
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 88888888888888875 55556788899999998887766655443 2321 11234556666677777777665544
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.. .+....+.++ -..|++++|++.+..|.-.. .-+...+|...+- ....++-.+++-+...
T Consensus 489 ~~----~he~vl~ill---e~~~ny~eAl~yi~slp~~e-~l~~l~kyGk~Ll----~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 489 FK----KHEWVLDILL---EDLHNYEEALRYISSLPISE-LLRTLNKYGKILL----EHDPEETMKILIELIT 549 (933)
T ss_pred hc----cCHHHHHHHH---HHhcCHHHHHHHHhcCCHHH-HHHHHHHHHHHHH----hhChHHHHHHHHHHHh
Confidence 32 2444444444 34578999999988876443 3334444444331 3345666666655554
No 298
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.26 E-value=1e+02 Score=31.06 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
-.++..+..++|..+++.+++..-.++++.-... ++.-|...|...|..-.+.|+..-..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555555555555555555444433 333444555555555555555443333
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.06 E-value=70 Score=29.11 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=29.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004324 343 AKEGDVEDAEKTWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (761)
.+.++.++++.++..+.-..+. +...++- ...+.+.|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 4556667777777666654432 1122222 33455667777777777776554
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.58 E-value=75 Score=29.26 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=81.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAPV 230 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-~~~~li~~~~~~~~ 230 (761)
-++..+..++|+.-|..+.+.| +..-. ...-......+..|+-..|...|+++-.....|-.. -.-.|=.+|... .
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv-D 144 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV-D 144 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh-c
Confidence 5667888899999999998887 43222 222233455677889999999999987765555443 222333344322 6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (761)
+|.++......+.+-.. -.|=..+-.-.|..-.-.. |++..|.+.|..+......|..
T Consensus 145 ~gsy~dV~srvepLa~d--~n~mR~sArEALglAa~ka-----gd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 145 NGSYDDVSSRVEPLAGD--GNPMRHSAREALGLAAYKA-----GDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred cccHHHHHHHhhhccCC--CChhHHHHHHHHhHHHHhc-----cchHHHHHHHHHHHccccCcHH
Confidence 78888877777666543 2232222222222111112 5888888888888775555543
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.46 E-value=29 Score=32.83 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET---GMKPLMPSYINLTNMYLNLGMHDRL 456 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~li~~~~~~g~~~~a 456 (761)
++|.+.|-++...+.--+.....+|..-|. ..+.++|..++....+. +-.+|+..+.+|++.|-+.++.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555544333333333333332 44555555555555441 1134444444444444444444443
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=56 Score=37.61 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 183 ATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVA---YLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~---~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
...-|+.+.+...++.|..+-..- +. |..+-..+... |+. +.|++++|..-|-+-... +.|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly--~Kgdf~~A~~qYI~tI~~--le~s~----- 402 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLY--GKGDFDEATDQYIETIGF--LEPSE----- 402 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHccc--CChHH-----
Confidence 345567777777777777765432 22 33333333333 333 689999999988877753 55543
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL 339 (761)
Q Consensus 260 ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 339 (761)
+|.-+... ..+.+--..++.+.+.|+. +.+..+.|+ .+|.+.++.++..++.+.-. .|.. ..-.-..+
T Consensus 403 Vi~kfLda------q~IknLt~YLe~L~~~gla-~~dhttlLL--ncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al 470 (933)
T KOG2114|consen 403 VIKKFLDA------QRIKNLTSYLEALHKKGLA-NSDHTTLLL--NCYIKLKDVEKLTEFISKCD-KGEW--FFDVETAL 470 (933)
T ss_pred HHHHhcCH------HHHHHHHHHHHHHHHcccc-cchhHHHHH--HHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHH
Confidence 33444333 2677777778888888875 344445555 88888888888766665433 2211 11234567
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
..|.+.+-+++|..+-..... ....... .+-..|++++|++.+..|.
T Consensus 471 ~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 471 EILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 777777777777766544332 2222222 3345677888888887664
No 303
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.71 E-value=34 Score=29.84 Aligned_cols=92 Identities=15% Similarity=0.290 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCc-cchhhHHHHHHhhhcccCC-----cchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004324 114 AKLAWLCKELPS-HKGGTLVRILNAQKKWLRQ-----EDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLA 187 (761)
Q Consensus 114 ~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~~p-----~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 187 (761)
.-|.|+-..-|. .....+..++...-.-+.. +...|+-+-+.-+.....+..+|..|..+|...--...|..-.
T Consensus 27 ~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA 106 (126)
T PF08311_consen 27 RYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWA 106 (126)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHH
T ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 568888776666 3333444444432222222 2333444422223344488899999998885555677888888
Q ss_pred HHHHhcCChhHHHHHHHH
Q 004324 188 DYMGKERKFAKCRDIFDD 205 (761)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~ 205 (761)
..+.+.|++.+|.++|+.
T Consensus 107 ~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 888899999999988864
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.66 E-value=35 Score=32.24 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCCH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~ 487 (761)
+.+.|+ ++|.+.|-.+...+.--++.....|..-|. ..+.+++..++....+ +-.+|+..+.+|++.|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 567777777777776556666666666565 5577888888887775 3367888888888888888888
Q ss_pred HHHH
Q 004324 488 EKAE 491 (761)
Q Consensus 488 ~~A~ 491 (761)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 305
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.61 E-value=79 Score=28.26 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 004324 428 FVETGMKPLM--PSYINLTNMYLNLGMHDRLHLAFSECLE------KCRPNRTIYGIYLESLKNAGN-IEKAEEIFNHMH 498 (761)
Q Consensus 428 m~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~~------~~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~ 498 (761)
|++.+..++. ...|+++.-....+.+.....+++.+.. .-..+..+|.+++.+.++..- ---+..+|+-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444444443 2345555555555556655555555532 113456678888888876665 456777888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhC
Q 004324 499 SDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 499 ~~g~~~p~~~t~~~li~~~~~~ 520 (761)
+.+ .+++..-|..||.++.+.
T Consensus 108 ~~~-~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KND-IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcC-CCCCHHHHHHHHHHHHcC
Confidence 766 778888888888887664
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.18 E-value=91 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=24.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES 361 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 361 (761)
..+|.++.+....+-+-..|-..-...--.|--+-.+.|++..|.+.|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344445544444443332222111222233444445666666666666655543
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.08 E-value=2.6e+02 Score=33.98 Aligned_cols=154 Identities=11% Similarity=-0.039 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCChHHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY----KMEAYAKIGEFMKSL 387 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~ 387 (761)
+++.|+.-+.++. ...|.-.++.--+.|.+.+|..++. |+...+.. ..+.+...+++++|.
T Consensus 895 ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 895 RYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred HHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3555655554442 1223333444446666666666653 34444443 344444567777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM--PSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
-.|+..-+. --.+.+|-.+|++++|+.+..+|.... |. .+--.|+.-+...+++-+|-++..+...
T Consensus 960 l~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 960 LMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 776654221 124677788888888888887765421 22 2235667777777887777777766542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
. ..-.+..||+...+++|..+-..-.+
T Consensus 1028 --d-----~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1028 --D-----PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred --C-----HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 1 12345667777788888887665543
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.87 E-value=1.3e+02 Score=30.33 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
+++.+-+.|..+|.+.+|.++.+.....+. .+...|-.++..|+..|+--.|.+-++.|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 456667788899999999999988887764 467778888999999998888877777764
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.58 E-value=1.4 Score=39.67 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (761)
Q Consensus 338 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (761)
+|..+.+.+..+...++++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666667776666554455666777777777776666666666511 11222345556666666
Q ss_pred HHHHHHHHHH
Q 004324 418 TELTESLMKE 427 (761)
Q Consensus 418 ~~~A~~l~~~ 427 (761)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555444
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=69.19 E-value=12 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|..+...|.+.|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 311
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=68.81 E-value=1.6e+02 Score=30.99 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=171.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYM--GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLS-AP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~-~~ 229 (761)
.....|+-..|.+.-....+. +..|....-.|+.+- .-.|++++|++-|+.|.. |..|--.=+.++.- ..
T Consensus 93 iAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAq 165 (531)
T COG3898 93 IAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred hhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHH
Confidence 344667777777766555432 333443333333332 236888888888888877 44443333333221 12
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-CCcCHHHHH--HHHHHH
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQKDIYS--GLIWLH 305 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~--~li~~~ 305 (761)
+.|..+.|...-...-.. .|. ......+|...|.. |+++.|+++.+.-.... +.++..--. .|+...
T Consensus 166 r~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~------gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 166 RLGAREAARHYAERAAEK---APQLPWAARATLEARCAA------GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred hcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhc------CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 578888887777766543 333 45677777777776 58888888887765433 233332222 222111
Q ss_pred hhc-cCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 306 SYQ-DNIDKERISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 306 ~~~-~~g~~~~a~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
+.. -.-+...|...-.+. ..+.||.+-- ..--.++.+.|++.++-++++.+-+..+.|++. .+-.+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc
Confidence 111 112344444433333 3356664432 234577889999999999999999988766542 23344555653
Q ss_pred HHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 004324 384 MKSLEIFREMQE-RLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRLHLAF 460 (761)
Q Consensus 384 ~~A~~~~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~a~~~~ 460 (761)
++.-++.... ...+| +..+--++..+-...|++..|..--+...+ ..|....|..|.+.-.- .|+-.++..++
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 3322222211 01223 566677777888888999888766665554 47888888888887654 49999999999
Q ss_pred HHHHh
Q 004324 461 SECLE 465 (761)
Q Consensus 461 ~~m~~ 465 (761)
.+.++
T Consensus 387 Aqav~ 391 (531)
T COG3898 387 AQAVK 391 (531)
T ss_pred HHHhc
Confidence 88875
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.70 E-value=1.3e+02 Score=30.17 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+.+.....|..+|.+.+|.++.+....-+ +.+...|-.++..+...|+--.|.+-+++|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556678889999999999999888875 55788888999999999998888887777754
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.69 E-value=66 Score=26.57 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=67.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
...+.++|..+-+|+...+ -. ...+--.-+..+...|++.+|..+.+.+ +.||...|-+|-.. |.|..+
T Consensus 17 G~HcHqEA~tIAdwL~~~~-~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~-----rlGl~s 85 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKG-ES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW-----RLGLGS 85 (115)
T ss_pred cchHHHHHHHHHHHHhcCC-ch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH-----hhccHH
Confidence 3445788999999998877 22 3444444556678999999999998877 46999999887665 468888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
++..-+..|... -.|....|..
T Consensus 86 ~l~~rl~rla~s--g~p~lq~Faa 107 (115)
T TIGR02508 86 ALESRLNRLAAS--GDPRLQTFVA 107 (115)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHH
Confidence 888888888875 3566555543
No 314
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.35 E-value=2.2e+02 Score=32.59 Aligned_cols=296 Identities=10% Similarity=-0.003 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
+.+..|.++-..+...-..- ..++.-...-+.......-+++++-..+=.+.-. -....|..+.+-.-.+|+.+.|..
T Consensus 451 ~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred chhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 37778887766663322221 2333332211222211222333333332222223 345677777777788999999999
Q ss_pred HHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHh-----
Q 004324 354 TWLRLLESDNG----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE----------LLCK----- 414 (761)
Q Consensus 354 ~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~----------~~~~----- 414 (761)
+++.=...+.. .+..-+..-+.-..+.|+.+-...++..|..+ .+...|...|. -+++
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~ 605 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRNQPLALSLYRQFMRHQDRA 605 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHhchhhhHHHHHHHHhhchh
Confidence 88643322211 11122344455566677777777777666543 12222222221 1111
Q ss_pred -------cCCHHHHHHHH--HHHH----HcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHh--CCCC
Q 004324 415 -------AEETELTESLM--KEFV----ETGMKPLMPSYINLTNMYLNLGMH----------DRLHLAFSECLE--KCRP 469 (761)
Q Consensus 415 -------~g~~~~A~~l~--~~m~----~~g~~pd~~t~~~li~~~~~~g~~----------~~a~~~~~~m~~--~~~p 469 (761)
.++-.++..-| +... ..|..|+ .....++|.+.... .+-.++...+.. +..-
T Consensus 606 ~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f 682 (829)
T KOG2280|consen 606 TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF 682 (829)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 12111121111 1100 0122232 23344445544331 122223333332 2223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
.--+.+--+.-+...|+..+|.++-.+.+ + ||...|---+.+++..++|++-+++-+.+.. -++
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i-pdKr~~wLk~~aLa~~~kweeLekfAkskks-PIG---------- 746 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----I-PDKRLWWLKLTALADIKKWEELEKFAKSKKS-PIG---------- 746 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----C-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-CCC----------
Confidence 33344555666777899999998877664 3 7888888889999999999988888877762 222
Q ss_pred HHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 550 YVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
|.-...+|.+.|+.++|...+. ..-.+ -.+.+|.+.|++.+|..
T Consensus 747 --------------------------y~PFVe~c~~~~n~~EA~KYiprv~~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 747 --------------------------YLPFVEACLKQGNKDEAKKYIPRVGGLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred --------------------------chhHHHHHHhcccHHHHhhhhhccCChH-------HHHHHHHHhccHHHHHH
Confidence 3334467888888888887764 22111 25566777777777765
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.18 E-value=1.3e+02 Score=29.76 Aligned_cols=275 Identities=14% Similarity=0.155 Sum_probs=168.2
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHhhccCCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHh
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI-WLHSYQDNIDKERISLLKKEMQQA---GF--EEGKEVLLSVLRVCAK 344 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~g~~~~a~~l~~~m~~~---g~--~p~~~~~~~ll~~~~~ 344 (761)
+.....++|+.-|.+.++....--..-+.++- ++....+.+++++.++.|.+|... .+ .-+..+.|+++.--+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 33457899999999998766443344444332 236678889999999999988642 11 1245677899988888
Q ss_pred cCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----C-------HHHHHHH
Q 004324 345 EGDVEDAEKTWLRLLE----SD-NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA----S-------VPAYHKI 408 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~-------~~t~~~l 408 (761)
..+.+.-.++++.-.+ .. -+.--.|-+.|-..|...|.+.+-.++++++...-..- | ...|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 8888887777765433 21 11111233457778888888888888998887652111 1 2457777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh----CCCCCHHH---HH
Q 004324 409 IELLCKAEETELTESLMKEFVET-GMKPLMPSYINLTNMY-----LNLGMHDRLHLAFSECLE----KCRPNRTI---YG 475 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~-----~~~g~~~~a~~~~~~m~~----~~~p~~~~---~~ 475 (761)
|..|....+-.+-..++++.... .--|-+... .+|+-| .+.|.+++|..=|-+..+ ...|-..+ |-
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 88888888888888888877662 223443333 334433 445788877654444332 22343332 44
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 004324 476 IYLESLKNAG----NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (761)
Q Consensus 476 ~li~~~~~~g----~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~ 551 (761)
.|..++.+.| +-.+|.- -+ -.|.....+.|+.+|-. .+..+-++++..=+ ..+--+|-+-++....
T Consensus 277 VLANMLmkS~iNPFDsQEAKP------yK--NdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~-~~IM~DpFIReh~EdL 346 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDSQEAKP------YK--NDPEILAMTNLVAAYQN-NDIIEFERILKSNR-SNIMDDPFIREHIEDL 346 (440)
T ss_pred HHHHHHHHcCCCCCcccccCC------CC--CCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh-ccccccHHHHHHHHHH
Confidence 5556666655 1222211 11 24677888999999854 45566556555544 3555677766666655
Q ss_pred Hhhhh
Q 004324 552 LSLNR 556 (761)
Q Consensus 552 ~~l~~ 556 (761)
+.-.|
T Consensus 347 l~niR 351 (440)
T KOG1464|consen 347 LRNIR 351 (440)
T ss_pred HHHHH
Confidence 54333
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.90 E-value=33 Score=32.74 Aligned_cols=44 Identities=14% Similarity=-0.043 Sum_probs=17.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
+.+.+.+|+.....-++.-+-|..+-..+++.||-.|++++|..
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 33334444433333333223333344444444444444444443
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.31 E-value=25 Score=29.08 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 004324 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRA 263 (761)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~ 263 (761)
+.++-++.+...++.|++....+.+.+|- |.+++..|+.+|+-.+.+ +.+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcR---RvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACR---RVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHH---HTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 56666777777788888888888888887 788888888888888775 33333366666654
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=65.43 E-value=15 Score=22.79 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 508 RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..|..+-..|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577788899999999999999999885
No 319
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.27 E-value=21 Score=24.97 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
..+.|...++..++++|.+.|+.+++..++.+
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 35778888999999999999999998875543
No 320
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.79 E-value=1.1e+02 Score=27.50 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHH
Q 004324 323 MQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRL 358 (761)
Q Consensus 323 m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m 358 (761)
|++.+..++..+ .|+++.-....+++.....+++.+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 444455554433 466666666666666666666655
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.66 E-value=1.1e+02 Score=27.81 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=45.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
+.++.+++..++..+.- ..|. ..++.. -.+.+.|++.+|..+|+++.... |....-..|+..|.....-..
T Consensus 22 ~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV-LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ccCChHHHHHHHHHHHH-hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHcCChH
Confidence 44566666666666542 2232 223332 34556788888888888876654 444444555555544333233
Q ss_pred HHHHHHHHHHcCCccChHH
Q 004324 526 AEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 526 A~~~~~~m~~~g~~~~~~~ 544 (761)
=..+-+++.+.+ ++|++
T Consensus 96 Wr~~A~evle~~--~d~~a 112 (160)
T PF09613_consen 96 WRRYADEVLESG--ADPDA 112 (160)
T ss_pred HHHHHHHHHhcC--CChHH
Confidence 333344444433 34443
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.20 E-value=2.6e+02 Score=31.80 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 004324 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR--------VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247 (761)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~ 247 (761)
.|.+..|..|...-.+.-.++-|+..|-+.... |+ ..+...-.+=|.+|. |++++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~-----g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY-----GEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh-----cchhHhhhhhhccchh
Confidence 457788888777766767777777777555432 21 112233455677776 9999999999888654
No 323
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.99 E-value=77 Score=34.27 Aligned_cols=201 Identities=12% Similarity=0.050 Sum_probs=96.8
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004324 283 FHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE--VLLSVLRVCAKEGDVEDAEKTWLRLLE 360 (761)
Q Consensus 283 ~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~ 360 (761)
++.+.+.|..|+........-++..+..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~---- 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD---- 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----
Confidence 44445567666543322222223444556654 344455667666543 12345667778888887766654
Q ss_pred CCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004324 361 SDNGIPTP---AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY--HKIIELLCKAEETELTESLMKEFVETGMKP 435 (761)
Q Consensus 361 ~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (761)
.|...+.. ...+.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+ +.+.+.|..+
T Consensus 90 ~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v----~~Ll~~g~~~ 161 (413)
T PHA02875 90 LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI----ELLIDHKACL 161 (413)
T ss_pred cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhcCCCC
Confidence 33211110 012233444556665 455555666766654321 2344455567776544 4444555544
Q ss_pred CHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH
Q 004324 436 LMPS--YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI---YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 436 d~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
+... -.+.+...+..|+.+-+..+++. |..++... ..+++...+..|+.+-+ +.+.+.| ..++.
T Consensus 162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~g-ad~n~ 230 (413)
T PHA02875 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRG-ADCNI 230 (413)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCC-cCcch
Confidence 3221 11233344556666544443332 44444322 12445545566776544 3444555 44443
No 324
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.13 E-value=8.2 Score=33.56 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=26.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004324 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~ 225 (761)
-+.|.-.+|-.+|..|.++|-.|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345777788889999999988887 688888764
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.15 E-value=21 Score=36.29 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---- 484 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---- 484 (761)
+-|.+.|.+++|...+..-+. +.| |.+++..-..+|.+...+..|..=....+. .-...+.+|.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-------Ld~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-------LDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-------hhHHHHHHHHHHHHHH
Confidence 459999999999999988766 456 889999999999999988877765554442 122345566655
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCCH
Q 004324 485 ---GNIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 485 ---g~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
|...+|.+=++...+ +.|+.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~---LEP~~ 198 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLA---LEPKN 198 (536)
T ss_pred HHHhhHHHHHHhHHHHHh---hCccc
Confidence 455555555555554 45663
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.85 E-value=4.9 Score=35.97 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=64.0
Q ss_pred chhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004324 146 DGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225 (761)
Q Consensus 146 ~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~ 225 (761)
....++-.+.+.+.+....++++.+...+ ...+....+.++..|++.+..++..++++.. +.+-...++..|
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c 80 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLC 80 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHH
Confidence 33333445667788889999999999876 4567899999999999999888888888722 223345566666
Q ss_pred hcCCCCCCHHHHHHHHHHHH
Q 004324 226 LSAPVQGCLDEACSIYNRMI 245 (761)
Q Consensus 226 ~~~~~~g~~~~A~~l~~~m~ 245 (761)
- +.|.+++|.-++.++.
T Consensus 81 ~---~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 81 E---KHGLYEEAVYLYSKLG 97 (143)
T ss_dssp H---TTTSHHHHHHHHHCCT
T ss_pred H---hcchHHHHHHHHHHcc
Confidence 6 6788888888887764
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.75 E-value=3e+02 Score=31.67 Aligned_cols=301 Identities=15% Similarity=0.145 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC
Q 004324 213 PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPR--PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (761)
Q Consensus 213 pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 290 (761)
.++..|..||..-. +.++-..+...+.|. ..++--+...+.... .++++|+..+.+.....
T Consensus 28 ~~l~~Y~kLI~~ai------------~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT-----~n~~~Ae~~L~k~~~l~ 90 (608)
T PF10345_consen 28 EQLKQYYKLIATAI------------KCLEAVLKQFKLSPRQEARVRLRLASILLEET-----ENLDLAETYLEKAILLC 90 (608)
T ss_pred hhHHHHHHHHHHHH------------HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhc
Confidence 35667777776544 334444322234443 334444444455433 28999999998764433
Q ss_pred CCcCH---HHHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCC
Q 004324 291 LEIQK---DIYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESD 362 (761)
Q Consensus 291 ~~p~~---~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g 362 (761)
-.++- -.....+.+..+.+.+... |...+++..+. +..+-...|.-+ +..+...++...|.+.++.+...-
T Consensus 91 ~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 91 ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 32222 1223334456677776555 88888776543 223334444444 333334489999999998877642
Q ss_pred ---CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 004324 363 ---NGIPTPAFVYKMEAYA--KIGEFMKSLEIFREMQERLG---------SASVPAYHKIIELLC--KAEETELTESLMK 426 (761)
Q Consensus 363 ---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~li~~~~--~~g~~~~A~~l~~ 426 (761)
..|-+.++-.++.+.. +.+..+++.+.++++..... .|-..+|..++..++ ..|+++.+...++
T Consensus 170 ~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 170 NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2334445555555544 34667788888887743222 345677888877665 4677667776666
Q ss_pred HHHH---cC-CC--------------------------CC---------HHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 004324 427 EFVE---TG-MK--------------------------PL---------MPSYINLTNM--YLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 427 ~m~~---~g-~~--------------------------pd---------~~t~~~li~~--~~~~g~~~~a~~~~~~m~~ 465 (761)
++.+ .. -. |. .....-++.+ ++..+..+.|.+++.+..+
T Consensus 250 ~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~ 329 (608)
T PF10345_consen 250 QLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALK 329 (608)
T ss_pred HHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Confidence 5542 11 00 11 1112222333 2333444466666666543
Q ss_pred ---CCC------C--------CHHHHHHHHHH---------HHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHH
Q 004324 466 ---KCR------P--------NRTIYGIYLES---------LKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIIL 514 (761)
Q Consensus 466 ---~~~------p--------~~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~~~p~-----~~t~~~li 514 (761)
+.. + +...|...+.. .+-.|++..|...++.|.....-.|+ ...+..++
T Consensus 330 ~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL 409 (608)
T PF10345_consen 330 QIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYL 409 (608)
T ss_pred HHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHH
Confidence 111 1 11233222222 33468899999999998864211122 23344444
Q ss_pred HH--HHhCCCHHHHHHHHH
Q 004324 515 SA--YLSSGDFVKAEKIYD 531 (761)
Q Consensus 515 ~~--~~~~g~~~~A~~~~~ 531 (761)
.| +-..|+.+.|...|.
T Consensus 410 ~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 410 LGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 33 335789999999998
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.86 E-value=2.9e+02 Score=31.28 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcCC-C
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADY-MGKERKFAKCRDIFDDIIN-------QGRVPSEMTFHILIVAYLSAP-V 230 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~m~~-------~g~~pd~~~~~~li~~~~~~~-~ 230 (761)
...|.+.++...+.|....-...-.....+ ++...+.+.|..+|....+ .| +....+-+-..|.... -
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567899999999988322222222222333 4467789999999999877 55 3335556666666210 0
Q ss_pred CC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 231 QG-CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 231 ~g-~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
.. +.+.|+.+|.+.-+. | .|+...+-..+.-... ...+...|...|......|..+- ...-......+..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~G~~~A-~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKAGHILA-IYRLALCYELGLGV 376 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCc
Confidence 22 678899999988876 3 4665544333333222 11267899999999888886421 11111111122223
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 363 (761)
..+.+.|..++.+.-..| .|-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 345677777777777666 2222222233344444 666666666666666554
No 329
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.74 E-value=1.7e+02 Score=28.66 Aligned_cols=222 Identities=15% Similarity=0.151 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
--.-.+|-...++++|..-+.+..+. .+.+... +-...-++.|.-+.++|.+. +--+..|+.....|..+
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 33445677788888888766665532 1111111 12233456677777777654 11234577888899999
Q ss_pred CCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHhcCCH
Q 004324 416 EETELTESLMKEFVE--TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE------KCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 416 g~~~~A~~l~~~m~~--~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~------~~~p~~~~~~~li~~~~~~g~~ 487 (761)
|.++-|-..+++.-+ ..+.| ++|++++.+... ...--...|...-..|++..++
T Consensus 105 GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 999988877777655 23444 455555554432 1111223444555677777788
Q ss_pred HHHHHHHHHhhhCC-C--CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccc
Q 004324 488 EKAEEIFNHMHSDQ-T--IGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPV 563 (761)
Q Consensus 488 ~~A~~l~~~m~~~g-~--~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 563 (761)
++|-..|.+-.... . --|+ -..|.+.|-.|....++..|.+.++.--+-+-...+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s--------------------- 225 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS--------------------- 225 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh---------------------
Confidence 87776665432210 0 0122 234666676777788899999988875432222222
Q ss_pred cCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhccccchhhHHHHHHHHHhhhhc
Q 004324 564 SLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEW 621 (761)
Q Consensus 564 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 621 (761)
.+..+...||.+| ..|+.|+...+.. .++.-.+-+.|.+.+..
T Consensus 226 -------ed~r~lenLL~ay-d~gD~E~~~kvl~-------sp~~r~MDneya~l~kd 268 (308)
T KOG1585|consen 226 -------EDSRSLENLLTAY-DEGDIEEIKKVLS-------SPTVRNMDNEYAHLNKD 268 (308)
T ss_pred -------HHHHHHHHHHHHh-ccCCHHHHHHHHc-------ChHhhhhhHHHHHHhhc
Confidence 2467777788777 4578888877754 22333455566665543
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.74 E-value=3.1e+02 Score=31.54 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCC-CCchhhHHHHHHHHHHHHHcCCC
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPG-GLSKYYLQQAEFIFHNLLTSGLE 292 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g-~~~~g~~~~A~~~~~~m~~~~~~ 292 (761)
+...|-.+-- |. |.|++++|.++..+... ........|...+..++.... ......-+....-|++..+....
T Consensus 111 ~~p~Wa~Iyy-~L---R~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~ 184 (613)
T PF04097_consen 111 GDPIWALIYY-CL---RCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTD 184 (613)
T ss_dssp TEEHHHHHHH-HH---TTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TT
T ss_pred CCccHHHHHH-HH---hcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 4445654433 33 78999999999877665 366666778888888876422 11111223444445555444432
Q ss_pred cCH
Q 004324 293 IQK 295 (761)
Q Consensus 293 p~~ 295 (761)
.|+
T Consensus 185 ~Dp 187 (613)
T PF04097_consen 185 GDP 187 (613)
T ss_dssp S-H
T ss_pred CCh
Confidence 244
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.37 E-value=47 Score=35.98 Aligned_cols=208 Identities=12% Similarity=0.075 Sum_probs=105.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCh
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP--AFVYKMEAYAKIGEF 383 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~ 383 (761)
+..|+.+.+ +.+.+.|..|+... ..+.+..++..|+.+-+. .+.+.|..|+.. ...+.+...++.|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 344555444 44455787776543 346677777888876444 445566554432 112345566778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETELTESLMKEFVETGMKPLMPS--YINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~a~~ 458 (761)
+.+..+++ .|...+... -.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 77655554 332211110 12334444556665 45566667787765432 1234555567787776655
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS---CNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t---~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++.-..-...|..-++. +...+..|+.+-+.. +.+.| ..|+... ..+++...+..|+.+ +.+.+.+
T Consensus 154 Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~----Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~ 223 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTP-LIIAMAKGDIAICKM----LLDSG-ANIDYFGKNGCVAALCYAIENNKID----IVRLFIK 223 (413)
T ss_pred HHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHhCC-CCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHH
Confidence 554322101112222223 344455677654443 44555 4444322 124454445667654 4444555
Q ss_pred cCCccC
Q 004324 536 KKYEIE 541 (761)
Q Consensus 536 ~g~~~~ 541 (761)
.|..++
T Consensus 224 ~gad~n 229 (413)
T PHA02875 224 RGADCN 229 (413)
T ss_pred CCcCcc
Confidence 564443
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.15 E-value=97 Score=29.28 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhC
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPN-----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSS 520 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~ 520 (761)
+.+.|++++|..-|...++.|++. .+.|..-..++.+.+.++.|.+-..+.++.+ | ......--..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHHhh
Confidence 455666777777666666655443 3455555667888888999988888888765 3 223333335578888
Q ss_pred CCHHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMCL 535 (761)
Q Consensus 521 g~~~~A~~~~~~m~~ 535 (761)
..+++|+.=|+++++
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999999986
No 333
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.26 E-value=1.1e+02 Score=25.59 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
..++|..+.+-+...-.-...+--+-+..+.+.|++++| +..-... -.||...|-+|- -.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~---~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQCH---CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS-----GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhcccC---CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 355555555555431122233333445566777777777 2222222 357777776554 347777777777777
Q ss_pred HHHHcC
Q 004324 532 LMCLKK 537 (761)
Q Consensus 532 ~m~~~g 537 (761)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 776544
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.81 E-value=1.1e+02 Score=25.32 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=20.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 33444444444444433 2344444433322 23333343333333343333
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.69 E-value=1.4e+02 Score=33.17 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=51.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.... -|..|+-.+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHHH
Confidence 4566666655544322 34456666666666666666666655433 244455555555655554445
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
-....+.| . +... ..+|...|+++++.+++.+
T Consensus 715 a~~~~~~g-~--~N~A----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQG-K--NNLA----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhc-c--cchH----HHHHHHcCCHHHHHHHHHh
Confidence 45555554 1 2222 2344566666666666554
No 336
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.58 E-value=1.7e+02 Score=27.51 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=9.1
Q ss_pred hCCCHHHHHHHHHHHH
Q 004324 519 SSGDFVKAEKIYDLMC 534 (761)
Q Consensus 519 ~~g~~~~A~~~~~~m~ 534 (761)
+.|++++|.++++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455666665555554
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.38 E-value=30 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666677777777777777777654
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.36 E-value=31 Score=21.42 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777788888888888888887765
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=55.13 E-value=21 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~ 494 (761)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444444
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.99 E-value=2.9e+02 Score=28.78 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV---NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.....+|..++..+.+.|+++.|...+..+...+ ..+ .....-.-...+...|+..+|+..+++...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456688889999999999999999999887743 111 223333445566778999999999988886
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.90 E-value=2.1e+02 Score=27.12 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004324 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLS-----VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (761)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 373 (761)
..|.....+...+++++|..-++.-... |....+.. |-+.....|.+++|..+++.....+.. ......-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHh
Confidence 3344444455555555555555543321 11222222 223344455555555555444433321 1111112
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 004324 374 MEAYAKIGEFMKSLEIFREMQER 396 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~ 396 (761)
-+.+...|+-++|+.-|.+-.+.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 34455555555555555554444
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.52 E-value=1.8e+02 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=30.9
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004324 344 KEGDVEDAEKTWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (761)
..++.+++..+++.|.-..+. +...++- .-.+...|++++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 367777777777776654432 1222232 334556777777777777777653
No 343
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.36 E-value=15 Score=32.05 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (761)
.-+.|.-.+|..+|++|.++|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667788889999888888874 77777653
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.98 E-value=2e+02 Score=28.83 Aligned_cols=128 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHHHHH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPL-------MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTIYG 475 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~~~ 475 (761)
+.+-..+.+++++|...+.++...|+..| ..+...+...|...|+.....+......+ .-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 476 IYLESLKNAGN-----IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 476 ~li~~~~~~g~-----~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+||..+-...+ +.-+..+.+...+....-.-...=.-+|..+.+.|.+.+|+.+..-+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.44 E-value=88 Score=27.07 Aligned_cols=58 Identities=9% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
..+-+..+..-.+.|+......-+++|-+.+++..|.++|+.++.++.+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3444555555666777777777777777777777777777777655544444454443
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.21 E-value=23 Score=21.65 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=10.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 004324 479 ESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+|.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 344444455555555554444
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.79 E-value=69 Score=30.22 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=59.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 595 (761)
-+.++|++++|..-|.+.++. . |...+ .-.++.|..-..+..+.+.++.|...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-c-p~~~~-------------------------e~rsIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-C-PSTST-------------------------EERSILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-C-ccccH-------------------------HHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence 356899999999999998852 2 22111 11255565555566777888888776
Q ss_pred HH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 596 IR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 596 ~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.. +++.|....+..-.+-+|.+..++++|..
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eeale 189 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALE 189 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 65 88888877676667788888888887776
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.51 E-value=3.1e+02 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
+..+|..+.|..+++.+.+-+.+.|
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHcCCc
Confidence 3345555555555555555443334
No 349
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.22 E-value=37 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+++..++++.+... +-|..-.-.+|.||...|++++|.++++++..
T Consensus 5 ~~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566655543 23556666778888888888888888888764
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.07 E-value=30 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 004324 338 VLRVCAKEGDVEDAEKTWLRLLESD 362 (761)
Q Consensus 338 ll~~~~~~g~~~~a~~~~~~m~~~g 362 (761)
+..+|...|+.+.|+++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556667777777777777666544
No 351
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.05 E-value=76 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..|+..+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.60 E-value=41 Score=26.39 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
...+.++|+..|....++-.-+|+. .++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777666653112222 36666777777777777666553
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.42 E-value=1.9e+02 Score=28.97 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=26.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQER--LGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
|.+++..+++.+++...-+--+. .++|.+ .-..|--|.+.+++..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56666666666665543332211 133322 22334445556665555555555444
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.12 E-value=5.5e+02 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 004324 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQ 246 (761)
Q Consensus 217 ~~~~li~~~~~~~~~g~~~~A~~l~~~m~~ 246 (761)
-|..|+.-|. ..|..++|++++.+...
T Consensus 506 ~y~~Li~LY~---~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYA---TKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHH---hccchHHHHHHHHHHhc
Confidence 4778888888 68889999999888876
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.11 E-value=35 Score=23.38 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3445555555555555555555443
No 356
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.90 E-value=4.2e+02 Score=28.65 Aligned_cols=35 Identities=9% Similarity=-0.068 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
++.+.|+.++..|.+.| ..|..+.-..++.++-.-
T Consensus 244 sd~~aal~~l~~~l~~G-~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 244 SDPDAALYYLARMLEAG-EDPLFIARRLVIIASEDI 278 (413)
T ss_pred CCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhh
Confidence 56666777777776666 444444444444444333
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.75 E-value=2.3e+02 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHHhhhCC
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g 501 (761)
+...|++++|..+|++..+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccC
Confidence 344555666666666655543
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.73 E-value=2e+02 Score=32.13 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
.-+.+.+.+.+.|-.++|.++- ..|+- -.....+.|+++.|.++..+.. +..-|..|-.+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4456667777777777776642 12221 1234457788888887766543 5567888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.+++..|.+.|..... |..|+-.|...|+.+....+-....+.-+.| .-.-+|...|+++++.++
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHH
Confidence 88888888888877655 3466667777777665555555444422333 223456667889888888
Q ss_pred HHHh
Q 004324 494 FNHM 497 (761)
Q Consensus 494 ~~~m 497 (761)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.62 E-value=42 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCR--PN-RTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~--p~-~~~~~~li~~~~~~g~~~~A~~l 493 (761)
.....++|+..|...+++.. ++ -.+...|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655221 11 12455566677777776666554
No 360
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=45.62 E-value=2.9e+02 Score=26.67 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
.||.|.--+...|+++.|.+.|+...+
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 444444444555555555555555554
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.01 E-value=1.1e+02 Score=24.52 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=5.6
Q ss_pred CChHHHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQ 394 (761)
Q Consensus 381 g~~~~A~~~~~~m~ 394 (761)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 362
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.97 E-value=3.7e+02 Score=27.67 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 348 VEDAEKTWLRLLESDN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (761)
...|.+.|+.....+. ..+......++....+.|..++-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455666666555311 234444445555555555544444444433332 245555666666666666666666
Q ss_pred HHHHHHHc
Q 004324 424 LMKEFVET 431 (761)
Q Consensus 424 l~~~m~~~ 431 (761)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 363
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.78 E-value=1.1e+02 Score=34.38 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 407 KIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHD------RLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~------~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
+|+.+|..+|++-.+.++++.+... |-+--...||..|+-..+.|.++ .|.+.++.. .+.-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--RLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hcCCcchHHHHHH
Confidence 6788888888888888888887763 33333456677777777777543 233333332 2556667777766
Q ss_pred HHHHh
Q 004324 479 ESLKN 483 (761)
Q Consensus 479 ~~~~~ 483 (761)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 65444
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.54 E-value=2.6e+02 Score=28.05 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK-- 414 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-- 414 (761)
.=|.+++..++|.++....-+--+.--+....+.-.-|-.|.|.|....+.++-..-...--.-+...|.+++.-|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346777888888777654333222211122344455577788888888888877766544222234446666655544
Q ss_pred ---cCCHHHHHHHH
Q 004324 415 ---AEETELTESLM 425 (761)
Q Consensus 415 ---~g~~~~A~~l~ 425 (761)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777665
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.34 E-value=1.9e+02 Score=31.23 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
++-.++....-.....+++.-+....-.|+.+...+.| +...|.++.+.+.+......+.....+-.+++....+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+++|..+-..|.... + -+......-...--..|.++++...|++..
T Consensus 373 ~~~a~s~a~~~l~~e-i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 373 WREALSTAEMMLSNE-I-EDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHHhccc-c-CChhheeeecccHHHHhHHHHHHHHHHHHh
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.27 E-value=3.5e+02 Score=27.03 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
|......+...|.+.+++.+|+.-|-.- ..++...+-.++.-....|...++ |...- -.+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~---~~~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~-RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG---TDPSAFAYVMLLEEWSTKGYPSEA---------------DLFIA-RAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS----HHHHHHHHHHHHHHHHHTSS--H---------------HHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc---CChhHHHHHHHHHHHHHhcCCcch---------------hHHHH-HHHH
Confidence 4566667777777888777777655322 122223322233222222322222 11111 2233
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 004324 516 AYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-|.-.|+...|...++...++
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 456678888888888777753
No 367
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.13 E-value=3.8e+02 Score=27.31 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=16.7
Q ss_pred HhHHHHHhhhhhhhhhhhHHH
Q 004324 573 ENLIGLLLGGLCIESDEKRKR 593 (761)
Q Consensus 573 ~~~~~~ll~~~~~~g~~~~a~ 593 (761)
.-.|.-||.++|..|+.+...
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 455888999999999888765
No 368
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=4e+02 Score=27.40 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC
Q 004324 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSAS 401 (761)
Q Consensus 327 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~ 401 (761)
.++.|..-+++|..+ +..++++-.+..+...+. |-.--...+-....-||+.|+-+.|++.+++..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345566656655543 222233333333333332 2111134556677889999999999988877643 477778
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 402 VPAYHKIIEL-LCKAEETELTESLMKEFVETGMKPLM----PSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 402 ~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
++-+..=+.- |....-+.+-.+..+.+.+.|...+. .+|-.+- |....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 7766443332 33344455666666777777766553 3444332 2234567777777777653
No 369
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.89 E-value=6e+02 Score=29.35 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=80.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMP--SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
++..-|+-++|..+.++|.... .|-.. -.-++.-+|+-.|+..-..+++.-.......|+.-+..+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 4455677788888888888754 33221 12345667888888877777777666555666777777777888888888
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILS--AYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~--~~~~~g~~~~A~~~~~~m~~ 535 (761)
....+..-+.+. ..|.+..=.++.- +|+-.| ..+|+.+++-|..
T Consensus 589 ~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES--YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 888888877766 3454443334433 333333 4788888888874
No 370
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=3.2e+02 Score=25.91 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYG-----IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~ 518 (761)
...+..++++++|...++..+. .|--..+. .|.......|.+++|+.+++.....+ . .......--+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~--~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA--QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc--cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhHHH
Confidence 4456667777777777776553 22222232 34556778899999999998877765 2 3333444556888
Q ss_pred hCCCHHHHHHHHHHHHHcC
Q 004324 519 SSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g 537 (761)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999998765
No 371
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.84 E-value=65 Score=32.57 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004324 364 GIPTPA-FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (761)
Q Consensus 364 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (761)
.||..+ |+..|..-.+.|++++|+.+++|.++.|+.--..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 345444 55778888888888888888888887776533333
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.44 E-value=4.3e+02 Score=27.15 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL--LSVLRVCAKEGDVEDAE 352 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~ 352 (761)
-+.+|+++|++.++.+ ..+|...- .....|... +.+.++. .|+.+| .-+.-+..+.|++.+|.
T Consensus 231 Ti~~AE~l~k~ALka~----e~~yr~sq---q~qh~~~~~------da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG----ETIYRQSQ---QCQHQSPQH------EAQLRRD--TNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hHHHHHHHHHHHHHHH----HHHHhhHH---HHhhhccch------hhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHH
Confidence 5778888888877655 23333221 112222212 2233332 244444 23444445788999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 353 KTWLRLLESDNGIP-TPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 353 ~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
+.|+.+.+.-.-.+ ......||.++....-+.+...++.+.-
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 98888776532111 1122345666665555555555554443
No 373
>PRK09687 putative lyase; Provisional
Probab=40.41 E-value=4.1e+02 Score=26.94 Aligned_cols=222 Identities=9% Similarity=-0.006 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCCCCCH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC----LDEACSIYNRMIQLGGYQPRP 254 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~----~~~A~~l~~~m~~~~g~~p~~ 254 (761)
|..+.-..+..+...|.. ++...+..+... +|...=...+.+++ +.|+ ..+++.++..+... .|+.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg---~lg~~~~~~~~a~~~L~~l~~~---D~d~ 105 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILS---QLGMAKRCQDNVFNILNNLALE---DKSA 105 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHH---hcCCCccchHHHHHHHHHHHhc---CCCH
Confidence 455555566666655543 222333333332 34444455555555 3444 24566666655332 2555
Q ss_pred HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 255 SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV 334 (761)
Q Consensus 255 ~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 334 (761)
.+-...+.++...+.... -....+...+...... ++..+--..+ .++.+.++ ..+...+-.+.. .+|..+
T Consensus 106 ~VR~~A~~aLG~~~~~~~-~~~~~a~~~l~~~~~D---~~~~VR~~a~--~aLg~~~~-~~ai~~L~~~L~---d~~~~V 175 (280)
T PRK09687 106 CVRASAINATGHRCKKNP-LYSPKIVEQSQITAFD---KSTNVRFAVA--FALSVIND-EAAIPLLINLLK---DPNGDV 175 (280)
T ss_pred HHHHHHHHHHhccccccc-ccchHHHHHHHHHhhC---CCHHHHHHHH--HHHhccCC-HHHHHHHHHHhc---CCCHHH
Confidence 555555555543311000 0001122222111111 1222222222 22333333 334444444433 234444
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 335 LLSVLRVCAKEG-DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 335 ~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
-...+.++.+.+ .-..+...+..+... ++..+-...+.++++.|. ..|+..+-+..+.+ + ..-..+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 444444444432 123344444444322 244555555666666655 34554444444432 2 1234555566
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004324 414 KAEETELTESLMKEFVE 430 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~ 430 (761)
..|.. +|...+..+.+
T Consensus 247 ~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLY 262 (280)
T ss_pred hcCCH-hHHHHHHHHHh
Confidence 66654 45555555554
No 374
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=40.02 E-value=2.6e+02 Score=30.40 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcC-ChHH
Q 004324 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF----VYKMEAYAKIG-EFMK 385 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g-~~~~ 385 (761)
.++++|+++.++.++.+-.. ..|-+..|..+|.++.+.|+.||..+= ...+.+|+-.| -+++
T Consensus 208 ~~ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee 274 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPI-------------SIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVED 274 (545)
T ss_pred CCHHHHHHHHHHHHHcCCce-------------EEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHH
Confidence 34666666666666654322 123344566777777777777766542 12344566666 3455
Q ss_pred HHHH
Q 004324 386 SLEI 389 (761)
Q Consensus 386 A~~~ 389 (761)
+.++
T Consensus 275 ~~~l 278 (545)
T TIGR01228 275 ADKL 278 (545)
T ss_pred HHHH
Confidence 5444
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.82 E-value=1e+02 Score=29.17 Aligned_cols=44 Identities=11% Similarity=-0.108 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+..++..+ ..|+..+|..++.++...|+.++|.++..++..
T Consensus 129 ~~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 129 AYIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455554 469999999999999999999999999999984
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.55 E-value=62 Score=19.42 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhh
Q 004324 487 IEKAEEIFNHMHS 499 (761)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (761)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=39.52 E-value=5.6e+02 Score=28.24 Aligned_cols=179 Identities=9% Similarity=0.048 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
.|.....++|..++..-++.-++.+..+|..-|- +-..|-.++..|..+ ..+.-..+++++.+..+. |++.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3667778899999999999999999999998874 567888899999998 667778888888776442 344334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKP--L---MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLK 482 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d---~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~ 482 (761)
.-|- .++.+.+...|.....+=+.- + ...|.-|+..- ..+.+....+...+.. |...-.+.+.-+-.-|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 488888888888887653221 0 12343333211 2456666666666664 55666677777778888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
...++.+|++++..+.+.. .-|...-..+|.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD--EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHH
Confidence 8999999999999877764 23444444555443
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.51 E-value=2.3e+02 Score=23.84 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=59.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
...+.++|..+.+|+...+. ....+--..+..+.+.|++.+|+. .......||...|-+|-.+ |.|-.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a~-----klGL~~ 86 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCAW-----KLGLAS 86 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHHH-----HCT-HH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHHH-----hhccHH
Confidence 44568999999999999982 344444455667789999999922 2344457999999887655 569999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLH 257 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~ 257 (761)
++...+.++... -.|....|
T Consensus 87 ~~e~~l~rla~~--g~~~~q~F 106 (116)
T PF09477_consen 87 ALESRLTRLASS--GSPELQAF 106 (116)
T ss_dssp HHHHHHHHHCT---SSHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHH
Confidence 999999888654 24444444
No 379
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.05 E-value=3.4e+02 Score=25.64 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHhhhC
Q 004324 447 YLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLE-SLKNAGN--IEKAEEIFNHMHSD 500 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 500 (761)
..+.|++++|..-++++.+ .++.-...|..+.. +||..+. +-+|.-++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3444555555555555442 22223334444443 5555553 44555555444443
No 380
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.98 E-value=1.1e+02 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCH
Q 004324 346 GDVEDAEKTWLRLLESDNGIPT 367 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~ 367 (761)
|-+.++..+++.|.+.|+..+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~ 37 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISP 37 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCH
Confidence 3333333344444433433333
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.30 E-value=5.8e+02 Score=28.05 Aligned_cols=255 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH
Q 004324 201 DIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (761)
Q Consensus 201 ~~f~~m~~~g~~pd~~~~~~li~~~~~~---~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~ 277 (761)
.||++-.+. .|+...|+..|..|... .+...+...+.+|+...+..+..|+...--+.+..|.. ...
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~--------t~~ 372 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLN--------TLN 372 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHh--------ccc
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHH
Q 004324 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL-RVCAKEGDVEDAEKTWL 356 (761)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~ 356 (761)
+|..+-..+...++.-+...+-.-+......+..---....+|......-..+-...|++.. ..+......+.....+.
T Consensus 373 ~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 373 EAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALL 452 (568)
T ss_pred hHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHH-cC
Q 004324 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII---ELLCKAEETELTESLMKEFVE-TG 432 (761)
Q Consensus 357 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li---~~~~~~g~~~~A~~l~~~m~~-~g 432 (761)
.+.... ....-+.+++-+-..|-..+|..++..+... -+|....|.-+| ......| +.-+..+++.|.. -|
T Consensus 453 s~~~~~---~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 453 SVIGAD---SVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG 527 (568)
T ss_pred HhcCCc---eeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
-|+..|..-+.-=...|..+.+-.++....+.+.|...
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.02 E-value=33 Score=31.75 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=43.3
Q ss_pred hHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCC---CccccCCcccchhhhhhccCccceeeeeeeCCc
Q 004324 590 KRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS---FKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGH 658 (761)
Q Consensus 590 ~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~ 658 (761)
+.|..-++ +.++|+...++.++++.|...+.+..-. +.++++|...|.+-.+ ..|+.-.|+..+.-+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444 8889999999999999999888754432 1566777677777665 478888888766654
No 383
>PRK09687 putative lyase; Provisional
Probab=38.00 E-value=4.5e+02 Score=26.67 Aligned_cols=136 Identities=7% Similarity=-0.019 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
..+-...+.++++.|. .+|...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 3344444555555554 3444444444432 23333334444444432 12334444444442 334455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~ 518 (761)
++.+.+.. .+...+-...+ .++ ..-..+.++...|.. +|...+..+.+.. ||...-...+.+|.
T Consensus 215 aLg~~~~~-~av~~Li~~L~--~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELK--KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHc--CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHHh
Confidence 56555553 33333333332 112 223456666666664 5666666666543 46555555555553
No 384
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.74 E-value=1.3e+02 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
+++.++|..|..+| |.-.. .-|.....-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~-IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKG-IGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44677888888887 54443 455566666778889999988886
No 385
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.56 E-value=3.9e+02 Score=25.85 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=52.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..|-...|+-=|....... |.-..++|-|--.+...|+++.|.+.|+...+.+..-+-...|.-|.-|- .|+++
T Consensus 77 SlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY----~gR~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRYK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee----cCchH
Confidence 3444444554455544432 33456677777777788888888888888877644334444455555554 67888
Q ss_pred HHHHHHHHHHhc
Q 004324 236 EACSIYNRMIQL 247 (761)
Q Consensus 236 ~A~~l~~~m~~~ 247 (761)
-|.+=|.+.-+.
T Consensus 151 LAq~d~~~fYQ~ 162 (297)
T COG4785 151 LAQDDLLAFYQD 162 (297)
T ss_pred hhHHHHHHHHhc
Confidence 877766665554
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.02 E-value=58 Score=23.37 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=24.8
Q ss_pred HhhhhhhhhhhhHHHHHHH--hhccccchhhHHHH
Q 004324 579 LLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLR 611 (761)
Q Consensus 579 ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l 611 (761)
|.-|+.+.|+++.|++..+ +.++|++..+-.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3346789999999999999 99999998665443
No 387
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.84 E-value=31 Score=36.45 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=34.8
Q ss_pred ccccCCcccchhhhhhccCccceeeee----eeCCcccCCCcEEEEecc-CHHHHHHHH
Q 004324 627 KFWPKGRLVIPKLIHRWLTPRALAYWF----MYGGHRTSVGDILLKLKV-SSEGIALVF 680 (761)
Q Consensus 627 ~~~~~a~~~~~~m~~~g~~Pd~~ty~~----li~g~~~~~~~~~~~~~g-~~~e~~~l~ 680 (761)
++.-+|-.++++++++|+.||.+|=-+ .++||+- .| +++|+.++.
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P---------~G~s~ee~~~lr 288 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLP---------VGYTVEEADELR 288 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCC---------CcCCHHHHHHHH
Confidence 455566678999999999999998655 6777777 78 888885553
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.81 E-value=2e+02 Score=23.13 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a 456 (761)
+.++++.+.++|+- +..-...+-.+--..|+.+.|.+++..+. +| | ..|...++++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 44556666666532 22222222222234567777777777776 44 2 3466666666666654444
No 389
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=36.41 E-value=42 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCCH
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
+++.|...|.++...|.++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7888888888888877677764
No 390
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=36.23 E-value=52 Score=26.90 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeCCC-HHHHHHhh
Q 004324 672 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSN-STLFWKLI 715 (761)
Q Consensus 672 ~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~~~-~~~~~~li 715 (761)
.-+.+..+.+.|++.|+++++...++.|.+|+.... ...|..+|
T Consensus 30 ~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e~I~dfL~~i 74 (93)
T PF14527_consen 30 DEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSEQISDFLKLI 74 (93)
T ss_dssp -HHHHHHHHHHHHHH----EEEEESSEEEEEE--HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHHHHHHHHHHc
Confidence 457778888888999999999999999999987653 24444444
No 391
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.74 E-value=3.7e+02 Score=25.12 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (761)
+++|.+.|++.... .|+..+|+.-+.... +|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 56777777777774 589999988887763 4777777777665433
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.21 E-value=3.2e+02 Score=24.21 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhh
Q 004324 505 VNTRSCNIILSAYLSSGD---FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~ 581 (761)
+...+--.+..++.++.+ ..+.+.+++++.+ .-.|+... ..+| -|.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rR----------------------------e~ly-YLAv 79 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRR----------------------------ECLY-YLAV 79 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccch----------------------------hhhh-hhHH
Confidence 455555566677776654 5677788888875 22222221 2222 2344
Q ss_pred hhhhhhhhhHHHHHHH--hhccccchhhHH
Q 004324 582 GLCIESDEKRKRHMIR--FQFNENSRMHSV 609 (761)
Q Consensus 582 ~~~~~g~~~~a~~~~~--~~l~p~~~~~~~ 609 (761)
+|.+.++++++++..+ ++.+|++..+..
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 6788899999998888 788888765433
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.97 E-value=2.1e+02 Score=24.12 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
-|..|+..|-..|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887766
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.21 E-value=1.1e+02 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=20.8
Q ss_pred ccCCcchhhhhHHHhccCChhHHHHHHHHHHHcCCC
Q 004324 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWY 176 (761)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 176 (761)
|..|++.-| +.++...++|+++.++|.++|.+
T Consensus 62 Gy~PtViD~----lrRC~T~EEALEVInylek~GEI 93 (128)
T PF09868_consen 62 GYNPTVIDY----LRRCKTDEEALEVINYLEKRGEI 93 (128)
T ss_pred CCCChHHHH----HHHhCcHHHHHHHHHHHHHhCCC
Confidence 455554444 44566777888888888888743
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.19 E-value=6e+02 Score=27.08 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---------CCCCCC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD---------QTIGVN 506 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~~p~ 506 (761)
.+.-+.+-|..+|+++.|.+.+.+... ..+--+..|-.+|..-.-.|++.....+..+..+. - +++-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~-v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE-VPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh-cCcc
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE 586 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 586 (761)
...+..+...+.+ +++.|.+.|-...-.-.. .|.+ ..|..++....|.+.+-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d-~~~i------------------------vtpsdv~iYggLcALAtf 283 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCD-YPEI------------------------VTPSDVAIYGGLCALATF 283 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccC-ccce------------------------ecchhhHHHHhhHhhccC
Q ss_pred hhhhHHHHHHH-------hhccccchhhHHHHHHHHHh
Q 004324 587 SDEKRKRHMIR-------FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 587 g~~~~a~~~~~-------~~l~p~~~~~~~~l~~~~~~ 617 (761)
+.-+.-..+.+ ++++|. ...+|...|..
T Consensus 284 dr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy~s 318 (466)
T KOG0686|consen 284 DRQDLKLNVIKNESFKLFLELEPQ---LREILFKFYSS 318 (466)
T ss_pred CHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHhhh
No 396
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.09 E-value=68 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+|..+...|...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344455555555555555555555443
No 397
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.54 E-value=4.7e+02 Score=25.63 Aligned_cols=100 Identities=18% Similarity=0.336 Sum_probs=63.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C-----------CCCCHHHHHHHHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-G-----------RVPSEMTFHILIV 223 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g-----------~~pd~~~~~~li~ 223 (761)
+..+-+--.++.+-....+ +.-+..-..+++ +...|+...|+.-++.-... | -.|.+.....|+.
T Consensus 171 klsd~qiL~Rl~~v~k~Ek-v~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEK-VNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred ccCHHHHHHHHHHHHHHhC-CCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 3333333334444444343 443333333333 45688888888877654431 2 1578888889999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (761)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~ 264 (761)
.+. .+++++|.+++.+.-+. |+.|.... +++...+
T Consensus 248 ~~~----~~~~~~A~~il~~lw~l-gysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 248 ACL----KRNIDEALKILAELWKL-GYSPEDII-TTLFRVV 282 (333)
T ss_pred HHH----hccHHHHHHHHHHHHHc-CCCHHHHH-HHHHHHH
Confidence 997 79999999999999888 89886443 4455554
No 398
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.07 E-value=61 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
-.-.-.+|.+|...|++++|.++.+++...
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333445688888888888888888887653
No 399
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.83 E-value=3.3e+02 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHhccCChhHHHHHHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQ 172 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~ 172 (761)
.|...++++.|+-++...+-
T Consensus 192 iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 192 ICIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeeccccHHHHHHHHHHHHh
Confidence 66677788888877777764
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=8.6e+02 Score=28.38 Aligned_cols=99 Identities=6% Similarity=0.096 Sum_probs=62.8
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRF---DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~ 230 (761)
..+.+.+++|+..-+..... .+ -..++-..|+.|.-.|++++|-.+.-.|... +..-|--.+.-+. .
T Consensus 366 ll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~---e 435 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA---E 435 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc---c
Confidence 34556667776655544332 33 3456778888899999999999988888875 7777887777777 5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS 266 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~ 266 (761)
.++..... .-+... .-+.+...|-.+|..|..
T Consensus 436 ~~~l~~Ia---~~lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIA---PYLPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhh---ccCCCC-CcccCchHHHHHHHHHHH
Confidence 56554432 223221 112344567777776654
No 401
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.64 E-value=7e+02 Score=27.36 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=65.8
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH-----HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVL--LSVLRV-----CAKEGDVEDAEKTWLRLLESDNGIPT---PAFVYKM 374 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~-----~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li 374 (761)
+..+..|+.+- ++.+.+.|..|+.... .+.+.. .+..|..+-+ +.+.+.|..++. ...+.|.
T Consensus 40 ~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 40 YLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred hhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCCchhh
Confidence 44555555544 3444456766654322 234444 4555555443 334445544322 1223333
Q ss_pred HHHH-HcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHh
Q 004324 375 EAYA-KIGEFMKSLEIFREMQERLGSASVPAY--HKIIELLCKAEETELTESLMKEFVETGMKPLMPSY--INLTNMYLN 449 (761)
Q Consensus 375 ~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~li~~~~~ 449 (761)
.+.. ..|+.+ +++.+.+.|..++.... .+.+...+..|. .-.++.+.+.+.|..++.... .+.+...+.
T Consensus 112 ~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 112 YAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred HHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 2222 445443 34444456655543321 234444555552 123445556666765543321 234555556
Q ss_pred cCCHHHHHHHHH
Q 004324 450 LGMHDRLHLAFS 461 (761)
Q Consensus 450 ~g~~~~a~~~~~ 461 (761)
.|+.+-+..+++
T Consensus 186 ~~~~~iv~~Ll~ 197 (480)
T PHA03100 186 KGNIDVIKFLLD 197 (480)
T ss_pred hCCHHHHHHHHH
Confidence 666655554444
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.29 E-value=3.2e+02 Score=23.75 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
.+.++|..|..+|.-.--..-|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888888888773233456677777778888888888888875
No 403
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=32.07 E-value=1.4e+02 Score=26.34 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=32.1
Q ss_pred hhhcccCCcchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCC
Q 004324 137 AQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFD 179 (761)
Q Consensus 137 ~~~~~~~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 179 (761)
..+.|.+-+++++..+-+...|+++.|+.+.+.+++.|...|+
T Consensus 41 ~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 41 ASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred HcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 3455666667777777777889999999999999998854454
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.61 E-value=2.5e+02 Score=24.39 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004324 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (761)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 262 (761)
+.++.++.+...++.|+...-.+.++++- |-+++..|+.+|+-++.+ +.+....|..++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~R---RvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACR---RVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 45666777777888899999999999988 789999999999988875 3343334544443
No 405
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.60 E-value=6.7e+02 Score=28.55 Aligned_cols=91 Identities=13% Similarity=0.291 Sum_probs=52.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFM------KSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
+|+.+|...|++..+.++++..... |-+.-...||..|.-+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7778888888888888887776654 22223456677777777777643 3444443333 34477777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004324 409 IELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~ 430 (761)
+.+-..--+-....-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6665443333333334444433
No 406
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.38 E-value=5.1e+02 Score=25.36 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=65.9
Q ss_pred hhhcccCCcchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHH---HHHHHHH-------HHhcCCh-h-HHHHHHH
Q 004324 137 AQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFAL---ATKLADY-------MGKERKF-A-KCRDIFD 204 (761)
Q Consensus 137 ~~~~~~~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~~li~~-------~~~~g~~-~-~A~~~f~ 204 (761)
..+.|.+-+++++.++-+...|+++.|+++.+.+++.|...|+.+- -+.+.+- -.+.|.. + .-...|.
T Consensus 76 ~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~ 155 (230)
T PHA02537 76 AAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFL 155 (230)
T ss_pred HcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 3456777888888888888999999999999999999965554321 1111111 1133432 1 2345566
Q ss_pred HHHHCCCCCCHHH--HH-HHHHHHhcC------CCCCCHHHHHHHHHHHHhc
Q 004324 205 DIINQGRVPSEMT--FH-ILIVAYLSA------PVQGCLDEACSIYNRMIQL 247 (761)
Q Consensus 205 ~m~~~g~~pd~~~--~~-~li~~~~~~------~~~g~~~~A~~l~~~m~~~ 247 (761)
.+....--||.+. |. .+-..+.+. ...++...|+.++++..+.
T Consensus 156 ~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 156 DLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 6655433455543 22 222223110 0245777888888888764
No 407
>PHA03095 ankyrin-like protein; Provisional
Probab=30.83 E-value=6.2e+02 Score=27.67 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=18.6
Q ss_pred HHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004324 391 REMQERLGSASVPA---YHKIIELLCKAEETELTESLMKEFVETGMKPLM 437 (761)
Q Consensus 391 ~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 437 (761)
..+.+.|..++... ++.| ...+..|+.+ +++.+.+.|..|+.
T Consensus 241 ~~ll~~g~din~~d~~g~TpL-h~A~~~~~~~----~v~~LL~~gad~n~ 285 (471)
T PHA03095 241 LPLLIAGISINARNRYGQTPL-HYAAVFNNPR----ACRRLIALGADINA 285 (471)
T ss_pred HHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 34445555444332 2233 2333445543 33444556666553
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.93 E-value=2.3e+02 Score=28.77 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 280 EFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344 (761)
Q Consensus 280 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 344 (761)
.++++.|.+.++.|.-..+-|+. ..+.+.-.+.+++.+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWit--LLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWIT--LLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHH--HHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 45666677777777777777766 334455556677777776654 33336666666663
No 409
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.82 E-value=2.9e+02 Score=30.48 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=77.9
Q ss_pred HHHHHHHHcCCCCCHHHH--HHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHH
Q 004324 318 LLKKEMQQAGFEEGKEVL--LSVLRVCA--KEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 318 ~l~~~m~~~g~~p~~~~~--~~ll~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 391 (761)
++.+.+.+.|..++...- .+.+...+ ..|+.+-+.. +.+.|..++... ..+.+...++.|. .-.++++
T Consensus 87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~ 160 (480)
T PHA03100 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILK 160 (480)
T ss_pred HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHH
Confidence 444555667766543221 23344444 6677665444 445565443221 2245566666662 1233455
Q ss_pred HHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCC--HHHHHHH
Q 004324 392 EMQERLGSASVPAY--HKIIELLCKAEETELTESLMKEFVETGMKPLMP--------SYINLTNMYLNLGM--HDRLHLA 459 (761)
Q Consensus 392 ~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--------t~~~li~~~~~~g~--~~~a~~~ 459 (761)
.+.+.|..++.... .+.+...+..|+.+ +.+.+.+.|..++.. .+.+.+...+..|. .+-+..+
T Consensus 161 ~Ll~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L 236 (480)
T PHA03100 161 LLIDKGVDINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYL 236 (480)
T ss_pred HHHHCCCCcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHH
Confidence 56667766654332 23455556666554 445555667665522 11344444455565 5444443
Q ss_pred HHHHHhCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 460 FSECLEKCRP---NRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 460 ~~~m~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
++. |..+ |..-++. +...+..|+.+-+..+
T Consensus 237 l~~---g~din~~d~~g~Tp-L~~A~~~~~~~iv~~L 269 (480)
T PHA03100 237 LSY---GVPINIKDVYGFTP-LHYAVYNNNPEFVKYL 269 (480)
T ss_pred HHc---CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 332 3332 2222233 3344556775544333
No 410
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=28.76 E-value=9.4e+02 Score=27.61 Aligned_cols=373 Identities=10% Similarity=0.064 Sum_probs=177.3
Q ss_pred ccCChhHHHHHHHHHHHcCC---CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhcC
Q 004324 156 RIRENETGFRVYEWMMQQHW---YRFDFALATKL-ADYMGKERKFAKCRDIFDDIINQG---RVPSEMTFHILIVAYLSA 228 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~~g---~~pd~~~~~~li~~~~~~ 228 (761)
...++..|+...+..++.-. ..+-...+.-+ +..+...+++..|.+.++.+...- ..|-+..+-.++.+....
T Consensus 111 ~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 111 FKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHL 190 (608)
T ss_pred HhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 34444458888887765420 11122223333 333333479999999998876542 334455555666665543
Q ss_pred CCCCCHHHHHHHHHHHHhcC-C-------CCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH-------HHcC-C-
Q 004324 229 PVQGCLDEACSIYNRMIQLG-G-------YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL-------LTSG-L- 291 (761)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~-g-------~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m-------~~~~-~- 291 (761)
+.+..+++++..+++.... + -.|-..+|..++..++.... |+++.+...++++ .... .
T Consensus 191 -~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~----~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 191 -RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ----GDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred -cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 5676788888888774420 1 13456788888887776432 3444444443332 2221 0
Q ss_pred --CcC----------------------------HHHHHHHHHHHhhccCCCHHHHHHHHH-------HHH-HcCCCC---
Q 004324 292 --EIQ----------------------------KDIYSGLIWLHSYQDNIDKERISLLKK-------EMQ-QAGFEE--- 330 (761)
Q Consensus 292 --~p~----------------------------~~~~~~li~~~~~~~~g~~~~a~~l~~-------~m~-~~g~~p--- 330 (761)
.+| ..+...++..-..+..+..++|.++++ +.. .....|
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 000 111122222233344444445544444 333 111111
Q ss_pred -----CHHHHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCC-C-----CHHHHHHHHHH--HHHcCChHHHHH
Q 004324 331 -----GKEVLLSVLRV---------CAKEGDVEDAEKTWLRLLESDNG-I-----PTPAFVYKMEA--YAKIGEFMKSLE 388 (761)
Q Consensus 331 -----~~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~~~g~~-~-----~~~~~~~li~~--~~~~g~~~~A~~ 388 (761)
+...|...+.. .+-.+++..|.+..+.|.+..-. | ....+...+.| +-..|+++.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11222222222 23568888898888888764211 1 11222222222 234588999999
Q ss_pred HHH--------HHHHcCCCCCHHHHHHH----HHHHHhcCCHHH--HHHHHHHHHHc-CCCC--CHHH-HHHHHHHHHhc
Q 004324 389 IFR--------EMQERLGSASVPAYHKI----IELLCKAEETEL--TESLMKEFVET-GMKP--LMPS-YINLTNMYLNL 450 (761)
Q Consensus 389 ~~~--------~m~~~g~~p~~~t~~~l----i~~~~~~g~~~~--A~~l~~~m~~~-g~~p--d~~t-~~~li~~~~~~ 450 (761)
.|. .....+...+...+..| |--+-.....++ +.++++.+... .-.| +..+ +..++.++...
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 997 44444444444444332 111111222223 66666665542 2222 2233 33334444322
Q ss_pred CC--HHHHHHHHHHHHhC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHH-----HH
Q 004324 451 GM--HDRLHLAFSECLEK----CRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNI-----IL 514 (761)
Q Consensus 451 g~--~~~a~~~~~~m~~~----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p--~~~t~~~-----li 514 (761)
.. ..++...+..-.++ ...+ ..+.+.|-..+. .|+..+..+........-.-.| ....|.. +.
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 21 22444444333321 1111 122333333333 6777776555544222110011 3445633 33
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~ 534 (761)
..|...|+.++|.....+..
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHH
Confidence 44667899999988887765
No 411
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.62 E-value=84 Score=24.59 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
++++-+.+|.-.++|+++++-|.++|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 356667777788888888888888875544
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.27 E-value=6.3e+02 Score=25.44 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC---------
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--------- 521 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g--------- 521 (761)
.|...+.+..... +......|...|.. ..++++|..+|....+.| +......+- .+...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g----~~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG----DGAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHH-HHHhcCCCchhhhhc
Confidence 4555555555411 34444444444433 236778888888887777 322222222 444444
Q ss_pred ------CHHHHHHHHHHHHHcCCccChH
Q 004324 522 ------DFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 522 ------~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
+...|...+......+......
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 6777788888777665544433
No 413
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.07 E-value=6.1e+02 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
.-|+..|..++.+|.-.|+...+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456666666666666666555443
No 414
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=27.73 E-value=7e+02 Score=25.79 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
...++..+...+.+.|.++.|...+..+...+... ...+.-.-...+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666667777777777777766666543111 122333335555566666777776666655
No 415
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.50 E-value=6e+02 Score=24.96 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHH
Q 004324 275 YLQQAEFIFHNL 286 (761)
Q Consensus 275 ~~~~A~~~~~~m 286 (761)
.+++|-++|.+.
T Consensus 29 k~eeAadl~~~A 40 (288)
T KOG1586|consen 29 KYEEAAELYERA 40 (288)
T ss_pred chHHHHHHHHHH
Confidence 556666655543
No 416
>PHA02878 ankyrin repeat protein; Provisional
Probab=27.46 E-value=6.2e+02 Score=27.89 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 004324 388 EIFREMQERLGSASVPAY---HKIIELLCKAEETELTESLMKEFVETGMKPLMPS--YINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
++.+.+.+.|..++...- .+.+...+..|+.+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++.
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ 223 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQR----LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN 223 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 366667777776665432 24455556677654 4444556666654321 12334444556666554444432
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS----CNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t----~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
-..-...|..-.+.|.-+....++.+- .+.+.+.| ..++... ++.|..| .+. .++++.+.+.|.
T Consensus 224 ga~in~~d~~g~TpLh~A~~~~~~~~i----v~~Ll~~g-advn~~~~~~g~TpLh~A---~~~----~~~v~~Ll~~ga 291 (477)
T PHA02878 224 GASTDARDKCGNTPLHISVGYCKDYDI----LKLLLEHG-VDVNAKSYILGLTALHSS---IKS----ERKLKLLLEYGA 291 (477)
T ss_pred CCCCCCCCCCCCCHHHHHHHhcCCHHH----HHHHHHcC-CCCCccCCCCCCCHHHHH---ccC----HHHHHHHHHCCC
Confidence 211111222233444444444454443 33344555 4444332 3444444 222 234555665564
Q ss_pred ccC
Q 004324 539 EIE 541 (761)
Q Consensus 539 ~~~ 541 (761)
.++
T Consensus 292 din 294 (477)
T PHA02878 292 DIN 294 (477)
T ss_pred CCC
Confidence 443
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.34 E-value=4.2e+02 Score=24.89 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 453 HDRLHLAFSECLEKCRPN--------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
++.|..+|+.+.+...++ ...--..+-.|.+.|.+++|.+++++..... +......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~----~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDP----ESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCC----CchhHHHHHHHHHHccc
No 418
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.92 E-value=6.3e+02 Score=28.13 Aligned_cols=119 Identities=13% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChH-----HHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA-----WMEKLDYV 551 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~~~~~ 551 (761)
|+.-|.+.+++++|..++..|.-.-.=.--..+.+.+.+.+.+..--.+.+..++.+.-.=+.|... ..+.-..+
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred HhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHhhhhccC
Q 004324 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~ 623 (761)
..+.|+++. -+-+++.+++|..++- ++ ..-+.++++..+.+..+
T Consensus 494 ~~~aRRfFh---------------------hLLR~~rfekAFlLAvdi~-------~~DLFmdlh~~A~~~ge 538 (545)
T PF11768_consen 494 SDLARRFFH---------------------HLLRYQRFEKAFLLAVDIG-------DRDLFMDLHYLAKDKGE 538 (545)
T ss_pred HHHHHHHHH---------------------HHHHhhHHHHHHHHHHhcc-------chHHHHHHHHHHHhccc
No 419
>PHA02989 ankyrin repeat protein; Provisional
Probab=26.88 E-value=7.5e+02 Score=27.39 Aligned_cols=16 Identities=0% Similarity=0.117 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCCCCCH
Q 004324 387 LEIFREMQERLGSASV 402 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~ 402 (761)
.++.+.+.+.|..++.
T Consensus 198 ~~iv~~Ll~~Ga~vn~ 213 (494)
T PHA02989 198 IKVIKYLIKKGVNIET 213 (494)
T ss_pred HHHHHHHHhCCCCccc
Confidence 3444555555655443
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.53 E-value=1.7e+02 Score=22.06 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
.|....++.|+..+++-.-+++++..+.++..+|.+ +..+|.--+..+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I--~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI--DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 355566677777777777777777777777777643 55566555555554
No 421
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=26.42 E-value=2.5e+02 Score=28.79 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHH
Q 004324 206 IINQGRVPSEM-TFHILIVAYLSAPVQGCLDEACSIYNR-MIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIF 283 (761)
Q Consensus 206 m~~~g~~pd~~-~~~~li~~~~~~~~~g~~~~A~~l~~~-m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~ 283 (761)
....|-.|++. +|.++...-+ ..-+++|+..|.. |.+. +.....|...|....-. ....|..+|
T Consensus 20 aIn~G~vP~iesa~~~~~e~e~----~~A~~~A~~~Y~~~m~~~--~~~P~~~~~eL~~~H~~--------~~~~A~~~F 85 (297)
T PF02841_consen 20 AINSGSVPCIESAWQAVAEAEN----RAAVEKAVEHYEEQMEQR--VKLPTETLEELLELHEQ--------CEKEALEVF 85 (297)
T ss_dssp HHHTTS--BHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----SS-SSHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHhCCCCCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHHH--------HHHHHHHHH
Confidence 35567778874 5888888777 4668899999987 5443 34444556666665543 577888888
Q ss_pred HHH
Q 004324 284 HNL 286 (761)
Q Consensus 284 ~~m 286 (761)
..-
T Consensus 86 ~~~ 88 (297)
T PF02841_consen 86 MKR 88 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.17 E-value=1.2e+02 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 004324 328 FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (761)
Q Consensus 328 ~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 364 (761)
+.||..+ |+..|....+.||+++|.+++++.++.|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4566666 579999999999999999999999999975
No 423
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.77 E-value=84 Score=23.70 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL 226 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~ 226 (761)
+.|....++-+++.+++..-.+++...+++..+.|.. +..+|---++.++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3456677888888888888889999999998888864 6777777777777
No 424
>PRK09857 putative transposase; Provisional
Probab=25.74 E-value=5.7e+02 Score=26.13 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (761)
+..++.-..+.++.++..++++.+.+.... .....-++..-+.+.|.-+++.++-.+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666666666554221 222233444555555555555555666665555443
No 425
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.66 E-value=1.8e+02 Score=25.36 Aligned_cols=44 Identities=5% Similarity=0.178 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFD 204 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 204 (761)
+....+|..|.++|.-..-...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33555666666665222233445555555556666666666654
No 426
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=25.24 E-value=1.4e+02 Score=26.97 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred chhhhhhccCccceeeeeeeCCcccCCCcEEEEecc-CHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeCCCHHHHHHh
Q 004324 636 IPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKV-SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 714 (761)
Q Consensus 636 ~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g-~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~~~~~~~~~l 714 (761)
..+|+.+|+.+..+-|.-.-.+....-...+--.+| .-+.|.++++.++..+++.....+|.. +.++|.+.+-+...
T Consensus 64 ~~kl~KR~i~~k~ld~~k~e~asg~~vrq~i~lk~GI~~d~AKkIvK~IKd~klKVqa~IQgd~--vRVtgKkrDDLQ~v 141 (160)
T PF04461_consen 64 RSKLIKRGIDLKALDFGKIESASGGTVRQVIKLKQGIDQDTAKKIVKLIKDSKLKVQAQIQGDQ--VRVTGKKRDDLQEV 141 (160)
T ss_dssp HHHHHHTT--GGGEE--SS-EEETTEEEEEEEE--S--HHHHHHHHHHHHHH--SEEEEEETTE--EEEEES-HHHHHHH
T ss_pred HHHHHHcCCCHHHcCCCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCceeEEecCcE--EEEecCCHHHHHHH
Confidence 456888899999888873322222222233445578 889999999999999999888888888 66788888777666
Q ss_pred h
Q 004324 715 I 715 (761)
Q Consensus 715 i 715 (761)
|
T Consensus 142 i 142 (160)
T PF04461_consen 142 I 142 (160)
T ss_dssp H
T ss_pred H
Confidence 5
No 427
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.06 E-value=8.8e+02 Score=27.10 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=53.4
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHhcCCCCCCHHH
Q 004324 170 MMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGR-------------VPSEMTFHILIVAYLSAPVQGCLDE 236 (761)
Q Consensus 170 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-------------~pd~~~~~~li~~~~~~~~~g~~~~ 236 (761)
+.+.| +..+......++.. ..|++..|..++++....|- .++....-.++.++. .|+.+.
T Consensus 191 l~~eg-i~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~----~~d~~~ 263 (509)
T PRK14958 191 LKEEN-VEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA----AKAGDR 263 (509)
T ss_pred HHHcC-CCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH----cCCHHH
Confidence 33445 66666555555544 35888888888887665431 234455666778887 799999
Q ss_pred HHHHHHHHHhcCCCCCCHH
Q 004324 237 ACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 237 A~~l~~~m~~~~g~~p~~~ 255 (761)
++.++++|... |..|...
T Consensus 264 ~l~~~~~l~~~-g~~~~~i 281 (509)
T PRK14958 264 LLGCVTRLVEQ-GVDFSNA 281 (509)
T ss_pred HHHHHHHHHHc-CCCHHHH
Confidence 99999999987 7776543
No 428
>PRK05414 urocanate hydratase; Provisional
Probab=24.79 E-value=6e+02 Score=27.96 Aligned_cols=176 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcC-ChHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY----KMEAYAKIG-EFMKS 386 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g-~~~~A 386 (761)
++++|+++.++.++.+-.. ..|-+..|..+|.++.+.|+.||..+=-+ .+.+|+-.| -+++|
T Consensus 218 ~Ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~ 284 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPL-------------SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEA 284 (556)
T ss_pred CHHHHHHHHHHHHHcCCce-------------EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHH
Q ss_pred HHH-------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------
Q 004324 387 LEI-------FREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMKPLMPSYINLTNMYLN-------- 449 (761)
Q Consensus 387 ~~~-------~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-------- 449 (761)
.++ |.++.+. +...--..|..+.+.|- +|-.-.+..+..+.|+. +.+.|-..+..|.+
T Consensus 285 ~~lr~~dp~~~~~~~~~----Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~-~aF~~P~fV~~~irplF~~G~G 359 (556)
T PRK05414 285 AELRAEDPEEFVKAAKA----SMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVE-NAFDFPGFVPAYIRPLFCEGKG 359 (556)
T ss_pred HHHHHhCHHHHHHHHHH----HHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCcc-ccCCCCCchhhhcchhhhcCCC
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------------HHhcCCHHHHHHHHHHhhhCCCC-CC
Q 004324 450 -------LGMHDRLHLAFSECLEKCRPNRTIYGIYLES--------------LKNAGNIEKAEEIFNHMHSDQTI-GV 505 (761)
Q Consensus 450 -------~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--------------~~~~g~~~~A~~l~~~m~~~g~~-~p 505 (761)
.|+.++-.+.=+.+.+-++-|...++=+=.+ |...|.-.++-..|++|+++|.+ .|
T Consensus 360 PFRWvalSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~e~~~f~GlpARI~w~g~~~R~~~~l~fNe~V~~Gel~aP 437 (556)
T PRK05414 360 PFRWVALSGDPEDIYKTDAAVKELFPDDEHLHRWIDMARERILFQGLPARICWLGYGERARLGLAFNEMVRNGELKAP 437 (556)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHhcccchHHHHHHHHHHhcCcccCCchhheecCccHHHHHHHHHHHHHHcCCccCC
No 429
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.58 E-value=7.7e+02 Score=25.24 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCC
Q 004324 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329 (761)
Q Consensus 250 ~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~ 329 (761)
..|-...++..|..|+.. ..--.+|.+.|.+.|+. .+.+..++..+.+.|+.
T Consensus 158 ~~~~~~lk~kAL~lLSrR--------eRSe~ELr~KL~kkG~~--------------------ee~IE~VIerLke~gYL 209 (309)
T PRK14136 158 SRPARSLKGRALGYLSRR--------EYSRAELARKLAPYADE--------------------SDSVEPLLDALEREGWL 209 (309)
T ss_pred cccHHHHHHHHHHHhhcc--------cccHHHHHHHHHHcCCC--------------------HHHHHHHHHHHHHcCCc
Confidence 457778888888888764 33344566666666654 34455666777777776
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 364 (761)
-|..-...++.. +.+.+ .-.+|-.++.++|+.
T Consensus 210 DDeRFAesyVr~--R~~kk-Gp~rIrqELrQKGId 241 (309)
T PRK14136 210 SDARFAESLVHR--RASRV-GSARIVSELKRHAVG 241 (309)
T ss_pred CHHHHHHHHHHH--Hhhch-hHHHHHHHHHHcCCC
Confidence 555544455544 23332 335667788888875
No 430
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.36 E-value=53 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCH
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
+++.|...|.++...|.|||+.
T Consensus 28 d~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CCC
T ss_pred CHHHHHHHHHHHHHcCCCChHh
Confidence 7888999999888888787764
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.23 E-value=6.6e+02 Score=28.55 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-------
Q 004324 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVE------- 349 (761)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~------- 349 (761)
+-|....+........+...+...++ .|+...+++....+.. |..+-..+...+...|-++
T Consensus 284 ~~a~~~~~~~~~~~~~~~e~~~~~i~-------~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~ 351 (566)
T PF07575_consen 284 EYAQSCLEEFPPDSTNPLEQILLAIF-------EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDF 351 (566)
T ss_dssp HHHHHHHHHS---TTSTTHHHHHHHH-------TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS----
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-------ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCcccccccccc
Q ss_pred ---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 350 ---DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMK 426 (761)
Q Consensus 350 ---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~ 426 (761)
..++.+-.--...+-.+...|..-+.-+..+++.. ....+++..+-...+...-.-++..|.+.|..+.|.++.+
T Consensus 352 ~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~ 429 (566)
T PF07575_consen 352 GGSSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICK 429 (566)
T ss_dssp -TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 427 EFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 427 ~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
.+-.+-+. ..-|..-+.-+.+.|+......+-+.+.+ .+..+......+|+.....--...-+..+-...+
T Consensus 430 ~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre------ 501 (566)
T PF07575_consen 430 ILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE------ 501 (566)
T ss_dssp HHHHHHHH--HHHHHHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH------
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
..-..+.|++.+|.+.+-.+....+-|.
T Consensus 502 --------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 502 --------FYELYDEGDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp ------------------------------------
T ss_pred --------HHHHHhhhhHHHHHHHHHHHHCCCCCcH
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.09 E-value=3e+02 Score=22.31 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHhcCCHHHH----HHHHHHhhhCCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 481 LKNAGNIEKA----EEIFNHMHSDQTIG---VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 481 ~~~~g~~~~A----~~l~~~m~~~g~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+.|++.+| .+.|+.....+... +-....-.+.......|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.97 E-value=9e+02 Score=25.79 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVP--AYHKIIELLCK--AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
+..+.+.+++..|.++|+++..+ ++++.. .|..+..+|.. .-++++|.+.++........ +..-.-.
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~--------l~~~~~~ 208 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA--------LNQEREG 208 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh--------hHhHHHH
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHh------cCCHHHHHHHHHHhhh
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRT-----IYGIYLESLKN------AGNIEKAEEIFNHMHS 499 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~-----~~~~li~~~~~------~g~~~~A~~l~~~m~~ 499 (761)
.+......+-+........-... ++-.+.+.|.. .|+++.|...+-+..+
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 209 LKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.87 E-value=4.2e+02 Score=27.08 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 422 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.++++.|.+.++.|.-+++--+.-.+.+.=.+.+...+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----ChhhhHHHHHHHHH
Confidence 57888888889999888888888888888888889999988873 33336666666664
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.87 E-value=9e+02 Score=25.76 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=10.2
Q ss_pred HHcCChHHHHHHHHHHHHcCC
Q 004324 378 AKIGEFMKSLEIFREMQERLG 398 (761)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~ 398 (761)
.+.+++..|.++|+++..+..
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~l 161 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRLL 161 (380)
T ss_pred HHhcChHHHHHHHHHHHhccc
Confidence 344455555555555554433
No 436
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.54 E-value=7.5e+02 Score=28.83 Aligned_cols=91 Identities=8% Similarity=0.011 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHH
Q 004324 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-------------RVPSEMTFHILIVAY 225 (761)
Q Consensus 159 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-------------~~pd~~~~~~li~~~ 225 (761)
..+.....+..+.+..++..+......++... .|++..|+.+++++...| -..+......|+.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004324 226 LSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (761)
Q Consensus 226 ~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t 256 (761)
. .++...++.++++|... |+.+..+.
T Consensus 257 ~----~~d~~~al~~l~~L~~~-G~d~~~~l 282 (709)
T PRK08691 257 I----NQDGAALLAKAQEMAAC-AVGFDNAL 282 (709)
T ss_pred H----cCCHHHHHHHHHHHHHh-CCCHHHHH
No 437
>PRK09857 putative transposase; Provisional
Probab=23.20 E-value=7.8e+02 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCc
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (761)
++..-+.+.|.-+++.++..+|...|+.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444445556666666655543
No 438
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.10 E-value=2.6e+02 Score=20.82 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=33.9
Q ss_pred eccCHHHHHHHHHHHhhcCCceeEeecCc-----------EEEEEEeCCCHHHHHHhhccc
Q 004324 669 LKVSSEGIALVFKTLKARSLDCRVKKKGR-----------VFWIGFLGSNSTLFWKLIEPY 718 (761)
Q Consensus 669 ~~g~~~e~~~l~~~m~~~gl~~~~~~~~~-----------~~~i~i~~~~~~~~~~li~~~ 718 (761)
+.++.-+|..+...|+..||.+.+..... .+.|+++.++.+.-.++|+.+
T Consensus 5 ~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 5 TAGDPIEAELIKGLLEENGIPAFVKNEHMSGYAGEPGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp EE--HHHHHHHHHHHHHTT--EE--S----SS---S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHHhCCCcEEEECCccchhhcccCccCceEEEECHHHHHHHHHHHHHh
Confidence 34678899999999999999988863322 278999999999988888543
No 439
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.03 E-value=7e+02 Score=27.18 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=31.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
.+.+++-.++++.+.+.|- +| ....-|+.|.+.+++++|..-+++-.+
T Consensus 67 ~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 67 VALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CCcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3456777777777777652 12 334457778888888888777776654
No 440
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.99 E-value=4e+02 Score=21.30 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL 420 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 420 (761)
-+.++|.++++.+..+ ...+|.++..++-..|...-
T Consensus 44 tr~~q~~~LLd~L~~R----G~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 44 SRRDQARQLLIDLETR----GKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCchHH
Confidence 4455556666655555 34455555555555554433
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.79 E-value=4.2e+02 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=15.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (761)
.++..+...+..-.|.++++++.+.+...+..|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444544444555555555555443333333
No 442
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=22.00 E-value=2.3e+02 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=5.5
Q ss_pred HHHHHHHcCCCCC
Q 004324 424 LMKEFVETGMKPL 436 (761)
Q Consensus 424 l~~~m~~~g~~pd 436 (761)
+++.+.+.|..++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 4444445554443
No 443
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=21.88 E-value=3e+02 Score=21.74 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHhhcCCc-eeEeecCcEEEEEEeCCCHHHHHHhhccccchhhhhcc-cCCCccccc
Q 004324 672 SSEGIALVFKTLKARSLD-CRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDL-LNEGSEYRK 736 (761)
Q Consensus 672 ~~~e~~~l~~~m~~~gl~-~~~~~~~~~~~i~i~~~~~~~~~~li~~~~~~~m~~~~-~~~~~~~~~ 736 (761)
.=-++..+.+.+...|.+ .+=.+.|+.|.+.+.+++.+.-.+.+ ..|..+| -||--++++
T Consensus 14 lDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~~~~e~a~~~v-----~~i~~~LLaNpvie~y~ 75 (80)
T PF02700_consen 14 LDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEADDEEEAEEQV-----EEICEKLLANPVIEDYE 75 (80)
T ss_dssp --HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-SSHHHHHHHH-----HHHHHHTTS-TTTEEEE
T ss_pred cCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeCCCHHHHHHHH-----HHHHHHhcCCCceEEEE
Confidence 345677888888888988 56678899999999999988888877 5665554 555544433
No 444
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=21.66 E-value=7.8e+02 Score=24.21 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
.|.+.....++..|.+ +++++|.+++.++-+.| +.|
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg-ysp 271 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLG-YSP 271 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC-CCH
Confidence 4555555555554443 55666666666666666 444
No 445
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.46 E-value=1.4e+03 Score=27.15 Aligned_cols=170 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (761)
..|...|++++|.++-+.- +..-..++..-.+.|...+.+..|-+++.++ ...|-.+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH------HHhcCCHH------------HHHHHHHHHHh--CCCCCHHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNM------YLNLGMHD------------RLHLAFSECLE--KCRPNRTIYGIYLE 479 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~------~~~~g~~~------------~a~~~~~~m~~--~~~p~~~~~~~li~ 479 (761)
++..|-.=+-..+.|...+-..++.. +.+.++++ .-..+-+++.+ ....+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
.+...|+.+++..+-.-|.. |..++.-+.+.|.+++|++++..
T Consensus 513 l~~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
No 446
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=21.26 E-value=8.2e+02 Score=24.30 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHhhhCC
Q 004324 485 GNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g 501 (761)
.+...+.-+.++|...+
T Consensus 106 ~~~q~~~li~dkll~~~ 122 (253)
T PF09090_consen 106 NNPQMGFLIIDKLLNYG 122 (253)
T ss_dssp T-HHHHHHHHHHHHHTT
T ss_pred cCCceehHHHHHHHhcC
Confidence 34444444444444444
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=21.04 E-value=2.6e+02 Score=23.54 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478889999999999999999998876
No 448
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=21.01 E-value=1.2e+03 Score=26.31 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Q 004324 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (761)
Q Consensus 215 ~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~ 267 (761)
...++.|+..+- .=+.+.-.+++.++.. .+ ...+..+++++...
T Consensus 310 ~~~f~~lv~~lR----~~~~e~l~~l~~~~~~----~~-~~~r~~~~Dal~~~ 353 (574)
T smart00638 310 AAKFLRLVRLLR----TLSEEQLEQLWRQLYE----KK-KKARRIFLDAVAQA 353 (574)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHh----CC-HHHHHHHHHHHHhc
Confidence 334555555553 4445555555555532 11 34455555555543
No 449
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.57 E-value=8e+02 Score=23.91 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004324 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (761)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 377 (761)
+..++.+..+-..+++++|.+++ -.-.+.|+-... ++.++...|+...|..+++.+.-... +...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 004324 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMK 426 (761)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~ 426 (761)
..++.+.+|..+-+...+. -....+..++..+.... +...+.+++.
T Consensus 151 La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhhhhhHHHHHHh
No 450
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=20.57 E-value=2.2e+02 Score=30.64 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004324 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 358 (761)
+.+++-.++++.+.+.|. ......-++.|++.++++.|++..++-
T Consensus 25 ~~~~e~~~~l~~l~~~g~---~dvl~ltiDsytr~~~~~~a~~~l~~~ 69 (428)
T cd00245 25 PLLEEHIELLRTLQEEGA---ADVLPLTIDSYTRVNDYEEAEEGLEES 69 (428)
T ss_pred CCHHHHHHHHHHHHhcCC---CCeeccccccchhhhhhHHHHHHHHhh
Confidence 344444444444444431 112223344455555555544444443
No 451
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=20.54 E-value=1.9e+02 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeCCCHHHHHHhhc
Q 004324 672 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIE 716 (761)
Q Consensus 672 ~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~~~~~~~~~li~ 716 (761)
+-+++.++...|.+.|++..+..++..|+|+++.+.....+-.+.
T Consensus 36 ~~~da~~i~~~L~~~gI~y~~~~~g~~~~I~Vp~~~~~~ar~~La 80 (206)
T PF01514_consen 36 DEEDANEIVAALDENGIPYKLSDDGGTWTILVPEDQVARARMLLA 80 (206)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEE-TTSEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCcEecCCCCeeEEEeCHHHHHHHHHHHH
Confidence 668999999999999999999999888999999999998877773
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.50 E-value=4.3e+02 Score=23.61 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004324 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (761)
Q Consensus 319 l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 381 (761)
+...+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|--.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344556677766443 34567777777777888999999988876654443222334444444
No 453
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.39 E-value=1.2e+03 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHhc
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG---R----------VPSEMTFHILIVAYLS 227 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g---~----------~pd~~~~~~li~~~~~ 227 (761)
++..+.++.+.+..++..+......++.. ..|++.+|+.++++....+ + .+|......++.++.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~- 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA- 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 34445555555433355565555544433 4688999999887755432 1 234555667777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCC
Q 004324 228 APVQGCLDEACSIYNRMIQLGGYQPR 253 (761)
Q Consensus 228 ~~~~g~~~~A~~l~~~m~~~~g~~p~ 253 (761)
.++..+++.+++++... |+.+.
T Consensus 258 ---~~d~~~~l~~~~~l~~~-g~~~~ 279 (830)
T PRK07003 258 ---AGDGPEILAVADEMALR-SLSFS 279 (830)
T ss_pred ---cCCHHHHHHHHHHHHHh-CCCHH
Confidence 68999999999999876 55443
No 454
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=20.24 E-value=91 Score=33.70 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=34.3
Q ss_pred ccccCCcccchhhhhhccCccceeeee----eeCCcccCCCcEEEEecc-CHHHHHHHH
Q 004324 627 KFWPKGRLVIPKLIHRWLTPRALAYWF----MYGGHRTSVGDILLKLKV-SSEGIALVF 680 (761)
Q Consensus 627 ~~~~~a~~~~~~m~~~g~~Pd~~ty~~----li~g~~~~~~~~~~~~~g-~~~e~~~l~ 680 (761)
++.-++-.++++++++|+.||.+|=-+ .++||+- .| +++|+.++.
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P---------~g~t~ee~~~lr 279 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIP---------EGYTVEDADKLR 279 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCC---------CCCCHHHHHHHH
Confidence 555666678999999999999998654 3556766 78 888886654
No 455
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=20.06 E-value=9.8e+02 Score=24.74 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 004324 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIFN 495 (761)
Q Consensus 419 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~ 495 (761)
+.-+.++++.++.. .-+.......|..+.+....+...+.|+++....+-+...|...|+-.... -.++....+|.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 44556666666652 244556666777777777777777777777765455677777776655442 23555555554
Q ss_pred HhhhC------CC---CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 496 HMHSD------QT---IGVN-------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 496 ~m~~~------g~---~~p~-------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+..+. +. ..+- ...|.-+...+.++|..+.|..+++-+++-.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 43221 10 0011 11233333445689999999999999998776
Done!