Query 004324
Match_columns 761
No_of_seqs 790 out of 4470
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.5E-35 1.2E-39 335.7 44.2 450 113-616 88-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.5E-35 1.2E-39 335.7 38.6 444 144-642 82-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.1E-31 7.4E-36 292.8 25.8 205 315-520 8-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.5E-31 1.2E-35 291.2 26.5 216 197-450 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.7E-28 225.2 44.6 359 153-535 8-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-23 1.3E-27 222.3 45.7 375 120-521 10-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.8E-20 9.7E-25 207.6 36.3 409 153-613 15-491 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 5.3E-19 1.8E-23 193.8 42.6 342 163-551 11-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 9E-19 3.1E-23 192.0 38.3 320 214-620 25-378 (450)
10 2gw1_A Mitochondrial precursor 99.9 4.3E-19 1.5E-23 198.0 34.6 408 180-642 6-478 (514)
11 3fp2_A TPR repeat-containing p 99.8 5E-17 1.7E-21 182.4 40.5 399 153-607 34-498 (537)
12 3fp2_A TPR repeat-containing p 99.8 3.1E-17 1E-21 184.1 37.2 397 180-626 25-483 (537)
13 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-20 9.3E-25 209.1 8.5 162 331-496 126-306 (1134)
14 3spa_A Mtrpol, DNA-directed RN 99.8 8.9E-20 3E-24 204.9 9.0 150 366-521 126-286 (1134)
15 3ieg_A DNAJ homolog subfamily 99.8 4.3E-15 1.5E-19 156.7 39.1 319 256-620 5-355 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.5E-14 5E-19 152.6 42.7 202 306-535 129-334 (359)
17 3hym_B Cell division cycle pro 99.7 9.6E-16 3.3E-20 159.9 30.3 280 305-620 30-320 (330)
18 2ooe_A Cleavage stimulation fa 99.7 1.2E-13 4.1E-18 154.7 43.1 410 155-603 23-495 (530)
19 1fch_A Peroxisomal targeting s 99.7 9E-16 3.1E-20 163.0 23.4 290 309-636 37-360 (368)
20 3hym_B Cell division cycle pro 99.7 1.2E-14 4.2E-19 151.4 31.5 287 217-522 24-320 (330)
21 2xm6_A Protein corresponding t 99.7 1.2E-12 4.1E-17 144.9 48.6 344 157-536 56-432 (490)
22 2xm6_A Protein corresponding t 99.7 5.6E-12 1.9E-16 139.5 52.4 354 161-554 24-411 (490)
23 1b89_A Protein (clathrin heavy 99.7 6E-16 2E-20 162.1 17.7 283 191-529 14-304 (449)
24 1fch_A Peroxisomal targeting s 99.7 7.4E-15 2.5E-19 155.9 26.1 290 231-534 38-357 (368)
25 4eqf_A PEX5-related protein; a 99.7 1.9E-14 6.6E-19 152.7 27.4 272 300-597 68-351 (365)
26 4eqf_A PEX5-related protein; a 99.7 5.1E-15 1.7E-19 157.2 21.3 258 331-626 64-348 (365)
27 2ooe_A Cleavage stimulation fa 99.6 6.3E-13 2.2E-17 148.8 39.0 410 167-626 2-484 (530)
28 1b89_A Protein (clathrin heavy 99.6 8.8E-16 3E-20 160.8 13.1 280 274-626 17-303 (449)
29 3cv0_A Peroxisome targeting si 99.6 2E-14 6.8E-19 149.6 23.4 229 301-535 25-268 (327)
30 3cv0_A Peroxisome targeting si 99.6 6.2E-14 2.1E-18 145.8 26.0 258 334-597 23-310 (327)
31 1xi4_A Clathrin heavy chain; a 99.6 6.9E-12 2.4E-16 145.9 44.5 325 141-534 982-1307(1630)
32 3mkr_A Coatomer subunit epsilo 99.6 4.5E-14 1.5E-18 144.5 23.3 264 309-623 11-283 (291)
33 3mkr_A Coatomer subunit epsilo 99.6 1.7E-13 5.9E-18 140.2 25.7 246 274-535 13-263 (291)
34 4g1t_A Interferon-induced prot 99.6 5.8E-12 2E-16 138.6 39.2 354 214-626 50-451 (472)
35 4g1t_A Interferon-induced prot 99.5 1.5E-11 5E-16 135.3 36.5 380 177-612 48-471 (472)
36 3uq3_A Heat shock protein STI1 99.5 1.9E-12 6.4E-17 129.4 24.3 216 305-534 13-234 (258)
37 3uq3_A Heat shock protein STI1 99.5 4.5E-12 1.5E-16 126.6 25.8 211 274-499 19-235 (258)
38 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-11 5.5E-16 122.4 27.0 201 332-536 37-238 (252)
39 2pl2_A Hypothetical conserved 99.5 1E-11 3.5E-16 121.0 23.6 200 329-534 2-212 (217)
40 3u4t_A TPR repeat-containing p 99.5 1.4E-11 4.7E-16 124.4 24.8 257 334-618 5-268 (272)
41 2vq2_A PILW, putative fimbrial 99.4 4.2E-11 1.4E-15 116.7 27.0 201 331-535 7-210 (225)
42 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.5E-12 2.2E-16 126.9 21.6 220 307-534 15-242 (275)
43 2ho1_A Type 4 fimbrial biogene 99.4 3.4E-11 1.2E-15 120.0 26.4 208 297-510 37-245 (252)
44 3c0w_A Intron-encoded endonucl 99.4 7.1E-14 2.4E-18 133.6 5.6 103 627-729 115-226 (235)
45 1xi4_A Clathrin heavy chain; a 99.4 6E-10 2E-14 129.9 38.9 363 179-618 952-1327(1630)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.4E-11 4.7E-16 124.5 22.5 248 272-530 17-269 (275)
47 2q7f_A YRRB protein; TPR, prot 99.4 1.7E-11 5.8E-16 121.3 21.8 200 331-535 22-221 (243)
48 2q7f_A YRRB protein; TPR, prot 99.4 7.4E-12 2.5E-16 123.9 19.2 216 366-617 22-239 (243)
49 1ouv_A Conserved hypothetical 99.4 4E-10 1.4E-14 113.9 32.2 189 332-535 6-214 (273)
50 2vq2_A PILW, putative fimbrial 99.4 1.4E-10 4.7E-15 113.0 27.5 210 297-512 8-220 (225)
51 1ouv_A Conserved hypothetical 99.4 6.2E-10 2.1E-14 112.5 32.7 216 304-537 13-252 (273)
52 2h6f_A Protein farnesyltransfe 99.4 6.3E-11 2.2E-15 125.4 26.0 249 332-618 97-366 (382)
53 2pl2_A Hypothetical conserved 99.4 2.3E-11 7.9E-16 118.5 20.8 190 401-626 4-206 (217)
54 3sf4_A G-protein-signaling mod 99.3 4.1E-11 1.4E-15 128.5 20.5 301 299-626 11-368 (406)
55 3u4t_A TPR repeat-containing p 99.3 2.4E-10 8.3E-15 115.2 24.5 229 304-535 10-249 (272)
56 2h6f_A Protein farnesyltransfe 99.3 5.3E-10 1.8E-14 118.3 26.3 225 304-535 104-347 (382)
57 2ond_A Cleavage stimulation fa 99.3 1.5E-09 5.3E-14 111.8 27.7 217 314-535 33-269 (308)
58 2ond_A Cleavage stimulation fa 99.3 2.6E-09 8.9E-14 110.1 29.1 224 349-605 33-275 (308)
59 3vtx_A MAMA; tetratricopeptide 99.3 1.7E-09 5.8E-14 101.9 24.6 166 366-535 4-169 (184)
60 3e4b_A ALGK; tetratricopeptide 99.2 1.2E-09 3.9E-14 119.2 25.9 343 153-538 12-389 (452)
61 3vtx_A MAMA; tetratricopeptide 99.2 1.7E-09 5.9E-14 101.8 23.8 168 331-501 4-171 (184)
62 4e6h_A MRNA 3'-END-processing 99.2 1.3E-07 4.5E-12 106.8 42.3 416 153-606 75-576 (679)
63 3ulq_A Response regulator aspa 99.2 1.1E-09 3.7E-14 116.8 23.7 299 230-535 24-367 (383)
64 3ro2_A PINS homolog, G-protein 99.2 3.2E-10 1.1E-14 117.6 18.5 274 297-597 5-327 (338)
65 4a1s_A PINS, partner of inscut 99.2 1.4E-10 4.9E-15 124.8 16.2 276 300-602 51-374 (411)
66 4a1s_A PINS, partner of inscut 99.2 3.7E-10 1.3E-14 121.5 18.6 261 274-535 62-371 (411)
67 4abn_A Tetratricopeptide repea 99.2 7.7E-10 2.6E-14 121.4 20.5 214 313-533 84-318 (474)
68 3sf4_A G-protein-signaling mod 99.2 1.2E-09 4.2E-14 116.9 21.5 261 274-535 23-335 (406)
69 3nf1_A KLC 1, kinesin light ch 99.2 4.8E-10 1.7E-14 115.2 16.8 238 296-535 26-306 (311)
70 4abn_A Tetratricopeptide repea 99.2 2.3E-09 7.7E-14 117.7 22.8 213 347-597 83-316 (474)
71 3as5_A MAMA; tetratricopeptide 99.1 4.2E-09 1.4E-13 98.7 20.9 164 368-535 9-172 (186)
72 3ulq_A Response regulator aspa 99.1 6.5E-09 2.2E-13 110.7 24.9 293 305-626 20-360 (383)
73 3ro2_A PINS homolog, G-protein 99.1 3.1E-09 1.1E-13 110.1 21.9 132 404-535 185-331 (338)
74 3e4b_A ALGK; tetratricopeptide 99.1 4.1E-08 1.4E-12 106.9 30.5 319 186-538 9-353 (452)
75 3as5_A MAMA; tetratricopeptide 99.1 9.1E-09 3.1E-13 96.3 21.9 165 333-500 9-173 (186)
76 4i17_A Hypothetical protein; T 99.1 2.4E-08 8E-13 97.7 23.7 208 366-616 6-225 (228)
77 3nf1_A KLC 1, kinesin light ch 99.1 4.2E-09 1.4E-13 108.1 19.1 228 272-499 39-306 (311)
78 4e6h_A MRNA 3'-END-processing 99.1 1.4E-06 4.8E-11 98.4 40.8 416 110-536 68-570 (679)
79 3q15_A PSP28, response regulat 99.0 2.4E-08 8.3E-13 106.1 24.2 233 300-535 104-364 (378)
80 3edt_B KLC 2, kinesin light ch 99.0 4.2E-09 1.4E-13 106.2 14.3 225 309-535 13-280 (283)
81 4gyw_A UDP-N-acetylglucosamine 99.0 2.6E-08 8.9E-13 113.9 22.1 165 367-535 9-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 98.9 4.1E-08 1.4E-12 112.3 21.8 165 332-499 9-173 (723)
83 4i17_A Hypothetical protein; T 98.9 1.3E-07 4.3E-12 92.4 22.6 195 330-535 5-208 (228)
84 1hz4_A MALT regulatory protein 98.9 4.8E-07 1.6E-11 95.7 28.6 267 305-597 22-317 (373)
85 1hz4_A MALT regulatory protein 98.9 4.1E-07 1.4E-11 96.2 27.8 272 186-499 20-321 (373)
86 3q15_A PSP28, response regulat 98.9 1.7E-07 5.9E-12 99.5 24.0 316 176-499 6-364 (378)
87 2fo7_A Synthetic consensus TPR 98.9 9.3E-08 3.2E-12 83.9 18.3 128 405-535 4-131 (136)
88 2fo7_A Synthetic consensus TPR 98.9 1.3E-07 4.3E-12 83.0 18.3 130 369-500 3-132 (136)
89 3edt_B KLC 2, kinesin light ch 98.9 2.1E-08 7.1E-13 101.1 14.4 224 275-500 23-281 (283)
90 1qqe_A Vesicular transport pro 98.8 2.7E-07 9.3E-12 94.0 20.3 196 341-543 46-272 (292)
91 3qky_A Outer membrane assembly 98.7 9.8E-07 3.3E-11 88.1 22.1 212 366-626 14-253 (261)
92 1qqe_A Vesicular transport pro 98.7 4E-07 1.4E-11 92.8 19.3 218 347-606 32-275 (292)
93 3rjv_A Putative SEL1 repeat pr 98.7 2.6E-06 8.9E-11 82.0 21.5 176 350-538 4-199 (212)
94 3qky_A Outer membrane assembly 98.7 1.3E-06 4.5E-11 87.1 19.9 184 330-535 13-223 (261)
95 3urz_A Uncharacterized protein 98.6 2.2E-06 7.6E-11 82.2 19.8 130 408-543 60-191 (208)
96 4ga2_A E3 SUMO-protein ligase 98.6 5.4E-08 1.9E-12 88.1 7.8 143 444-620 4-149 (150)
97 3mv2_B Coatomer subunit epsilo 98.6 1.3E-06 4.4E-11 87.7 18.2 160 371-535 104-281 (310)
98 2ifu_A Gamma-SNAP; membrane fu 98.6 2.6E-06 8.9E-11 87.3 21.0 226 273-528 4-253 (307)
99 3mv2_B Coatomer subunit epsilo 98.6 4.3E-06 1.5E-10 83.9 21.7 200 316-535 85-304 (310)
100 3rjv_A Putative SEL1 repeat pr 98.6 5.5E-06 1.9E-10 79.7 21.9 176 315-501 4-198 (212)
101 2pzi_A Probable serine/threoni 98.6 9.7E-07 3.3E-11 101.2 19.0 153 378-535 402-562 (681)
102 2pzi_A Probable serine/threoni 98.6 5.7E-07 2E-11 103.2 16.8 173 343-522 402-583 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 98.6 7.2E-06 2.5E-10 79.7 21.7 186 331-536 3-213 (225)
104 3urz_A Uncharacterized protein 98.6 4.2E-06 1.4E-10 80.3 19.4 133 373-513 60-196 (208)
105 2uy1_A Cleavage stimulation fa 98.5 0.00013 4.6E-09 79.6 33.4 106 160-289 11-118 (493)
106 3dra_A Protein farnesyltransfe 98.5 6.7E-05 2.3E-09 75.9 28.1 218 313-535 49-286 (306)
107 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.1E-05 3.8E-10 78.3 21.3 178 304-501 11-214 (225)
108 2vsy_A XCC0866; transferase, g 98.5 2.9E-06 9.9E-11 95.3 18.5 153 346-501 3-158 (568)
109 2vsy_A XCC0866; transferase, g 98.5 3.3E-06 1.1E-10 94.9 18.8 154 380-537 2-158 (568)
110 3qou_A Protein YBBN; thioredox 98.5 3.4E-06 1.2E-10 85.5 16.8 159 333-495 118-279 (287)
111 3dra_A Protein farnesyltransfe 98.5 5.2E-05 1.8E-09 76.8 25.1 234 346-613 47-301 (306)
112 2r5s_A Uncharacterized protein 98.4 1.9E-06 6.4E-11 80.2 13.4 160 372-534 11-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 98.4 1.1E-05 3.7E-10 82.7 20.3 197 310-534 4-222 (307)
114 3qou_A Protein YBBN; thioredox 98.4 3.5E-06 1.2E-10 85.5 16.3 164 366-535 116-283 (287)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.1E-05 3.6E-10 77.4 18.2 86 374-464 13-98 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.4 9.9E-06 3.4E-10 77.6 17.2 128 403-536 7-150 (213)
117 2r5s_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 77.8 13.7 161 335-499 9-172 (176)
118 4ga2_A E3 SUMO-protein ligase 98.3 2.3E-06 7.9E-11 77.2 10.8 57 373-430 37-93 (150)
119 1a17_A Serine/threonine protei 98.3 1.7E-05 5.7E-10 72.3 16.8 129 403-534 14-144 (166)
120 3u3w_A Transcriptional activat 98.3 4.9E-05 1.7E-09 77.1 21.9 162 373-535 81-265 (293)
121 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.4E-10 67.3 16.0 94 405-499 12-105 (125)
122 3u3w_A Transcriptional activat 98.3 8.1E-05 2.8E-09 75.5 22.4 163 337-499 80-265 (293)
123 2qfc_A PLCR protein; TPR, HTH, 98.3 5.2E-05 1.8E-09 76.9 20.9 167 369-535 77-265 (293)
124 1na0_A Designed protein CTPR3; 98.3 4E-05 1.4E-09 65.6 16.9 111 369-481 11-121 (125)
125 4gco_A Protein STI-1; structur 98.3 9.3E-06 3.2E-10 70.7 12.5 96 438-535 14-109 (126)
126 1a17_A Serine/threonine protei 98.3 4.1E-05 1.4E-09 69.7 17.5 128 369-498 15-144 (166)
127 3q7a_A Farnesyltransferase alp 98.2 0.00047 1.6E-08 70.5 26.0 237 275-535 52-330 (349)
128 3gyz_A Chaperone protein IPGC; 98.2 3.4E-05 1.2E-09 69.4 15.3 103 437-543 36-138 (151)
129 2vyi_A SGTA protein; chaperone 98.2 3.6E-05 1.2E-09 66.5 14.8 115 404-521 14-128 (131)
130 3gw4_A Uncharacterized protein 98.2 2.6E-05 9E-10 73.8 14.9 63 473-535 109-175 (203)
131 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00027 9.3E-09 71.5 23.0 166 333-498 76-264 (293)
132 2lni_A Stress-induced-phosphop 98.2 3.1E-05 1.1E-09 67.3 13.6 61 439-499 52-112 (133)
133 3gw4_A Uncharacterized protein 98.1 5.4E-05 1.9E-09 71.6 16.3 158 342-500 2-176 (203)
134 2uy1_A Cleavage stimulation fa 98.1 0.0048 1.6E-07 67.3 33.6 355 158-535 28-412 (493)
135 2vyi_A SGTA protein; chaperone 98.1 7.2E-05 2.5E-09 64.6 15.4 116 369-486 14-129 (131)
136 1p5q_A FKBP52, FK506-binding p 98.1 4.3E-05 1.5E-09 79.2 16.0 97 437-535 196-293 (336)
137 2vgx_A Chaperone SYCD; alterna 98.1 1.1E-05 3.9E-10 72.4 10.0 95 438-534 22-116 (148)
138 4f3v_A ESX-1 secretion system 98.1 5.3E-05 1.8E-09 75.0 15.5 187 344-536 18-237 (282)
139 4gco_A Protein STI-1; structur 98.1 9.3E-05 3.2E-09 64.2 15.5 95 405-500 16-110 (126)
140 2c2l_A CHIP, carboxy terminus 98.1 5.3E-05 1.8E-09 76.3 15.8 41 586-626 148-191 (281)
141 2c2l_A CHIP, carboxy terminus 98.1 1.8E-05 6.1E-10 79.8 12.2 193 331-535 3-198 (281)
142 2lni_A Stress-induced-phosphop 98.1 7.6E-05 2.6E-09 64.8 14.4 115 368-484 17-131 (133)
143 2e2e_A Formate-dependent nitri 98.1 3.1E-05 1.1E-09 71.7 12.4 119 414-535 22-143 (177)
144 4f3v_A ESX-1 secretion system 98.1 0.00012 4.1E-09 72.4 17.1 193 309-508 18-242 (282)
145 4gcn_A Protein STI-1; structur 98.1 3.7E-05 1.3E-09 66.9 12.0 109 438-548 9-122 (127)
146 3gyz_A Chaperone protein IPGC; 98.1 8E-05 2.7E-09 66.9 14.4 96 404-500 38-133 (151)
147 2e2e_A Formate-dependent nitri 98.0 4.3E-05 1.5E-09 70.7 13.0 121 379-501 22-145 (177)
148 1p5q_A FKBP52, FK506-binding p 98.0 0.00011 3.9E-09 76.0 17.5 146 331-498 146-292 (336)
149 2vgx_A Chaperone SYCD; alterna 98.0 2.2E-05 7.5E-10 70.5 9.7 110 389-501 9-119 (148)
150 1elw_A TPR1-domain of HOP; HOP 98.0 0.00027 9.2E-09 59.5 16.3 94 405-499 7-100 (118)
151 3dss_A Geranylgeranyl transfer 98.0 0.0041 1.4E-07 63.3 27.4 188 343-535 40-266 (331)
152 2fbn_A 70 kDa peptidylprolyl i 98.0 1.4E-05 4.7E-10 75.8 8.1 130 404-535 40-185 (198)
153 3q7a_A Farnesyltransferase alp 98.0 0.0013 4.5E-08 67.3 23.1 257 344-613 66-345 (349)
154 2fbn_A 70 kDa peptidylprolyl i 98.0 1.6E-05 5.4E-10 75.4 8.5 133 368-501 39-187 (198)
155 2xcb_A PCRH, regulatory protei 97.9 3.3E-05 1.1E-09 68.7 9.6 96 438-535 19-114 (142)
156 3dss_A Geranylgeranyl transfer 97.9 0.0087 3E-07 60.8 28.3 186 348-544 90-308 (331)
157 1elr_A TPR2A-domain of HOP; HO 97.9 0.00013 4.5E-09 62.9 12.9 106 438-545 5-115 (131)
158 2kck_A TPR repeat; tetratricop 97.9 8.6E-05 2.9E-09 62.1 11.3 96 438-535 7-105 (112)
159 3upv_A Heat shock protein STI1 97.9 0.00021 7.1E-09 61.7 13.9 96 438-535 5-100 (126)
160 3q49_B STIP1 homology and U bo 97.9 0.00023 7.7E-09 62.3 14.4 99 435-535 7-105 (137)
161 1elw_A TPR1-domain of HOP; HOP 97.9 0.00058 2E-08 57.4 16.6 106 369-476 6-111 (118)
162 3upv_A Heat shock protein STI1 97.9 0.00029 9.8E-09 60.8 14.7 95 404-499 6-100 (126)
163 2xcb_A PCRH, regulatory protei 97.9 0.00016 5.3E-09 64.2 12.8 98 402-500 18-115 (142)
164 1elr_A TPR2A-domain of HOP; HO 97.8 0.00014 4.9E-09 62.7 11.8 107 404-514 6-119 (131)
165 3sz7_A HSC70 cochaperone (SGT) 97.8 0.0002 6.8E-09 65.3 13.3 97 437-535 11-107 (164)
166 2dba_A Smooth muscle cell asso 97.8 0.00054 1.8E-08 60.6 15.8 97 402-500 28-128 (148)
167 2kck_A TPR repeat; tetratricop 97.8 0.00016 5.5E-09 60.3 11.3 97 404-501 8-107 (112)
168 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00033 1.1E-08 63.8 14.1 99 402-501 11-109 (164)
169 3q49_B STIP1 homology and U bo 97.8 0.00052 1.8E-08 59.9 14.7 99 401-500 8-106 (137)
170 4b4t_Q 26S proteasome regulato 97.8 0.0012 4.2E-08 70.6 20.7 196 340-535 12-244 (434)
171 4gcn_A Protein STI-1; structur 97.7 0.0011 3.8E-08 57.3 15.4 103 404-510 10-119 (127)
172 1dce_A Protein (RAB geranylger 97.7 0.0014 4.6E-08 72.9 19.5 171 418-623 45-244 (567)
173 4b4t_Q 26S proteasome regulato 97.7 0.0017 5.8E-08 69.5 20.0 193 307-499 14-244 (434)
174 3ro3_A PINS homolog, G-protein 97.7 0.00022 7.6E-09 64.0 10.8 97 439-535 51-157 (164)
175 1hxi_A PEX5, peroxisome target 97.7 0.00028 9.5E-09 60.6 10.8 93 441-535 21-113 (121)
176 2dba_A Smooth muscle cell asso 97.7 0.0013 4.5E-08 58.0 15.7 97 331-430 27-127 (148)
177 3rkv_A Putative peptidylprolyl 97.7 0.0003 1E-08 63.9 11.4 87 508-626 64-153 (162)
178 3ro3_A PINS homolog, G-protein 97.6 0.00033 1.1E-08 62.8 11.4 131 369-499 11-157 (164)
179 1hxi_A PEX5, peroxisome target 97.6 0.00049 1.7E-08 59.0 11.7 92 408-500 23-114 (121)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00068 2.3E-08 73.4 14.4 146 367-535 268-414 (457)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0011 3.7E-08 71.8 15.9 147 331-499 267-414 (457)
182 1wao_1 Serine/threonine protei 97.5 0.00075 2.6E-08 73.5 13.6 115 379-495 18-134 (477)
183 3k9i_A BH0479 protein; putativ 97.5 0.00011 3.9E-09 62.6 5.6 61 439-499 29-89 (117)
184 2xev_A YBGF; tetratricopeptide 97.5 0.0024 8.1E-08 54.9 14.3 91 443-535 8-104 (129)
185 2xev_A YBGF; tetratricopeptide 97.5 0.0037 1.3E-07 53.6 15.3 90 410-500 10-105 (129)
186 1wao_1 Serine/threonine protei 97.5 0.00028 9.4E-09 76.9 9.6 121 408-531 12-134 (477)
187 3rkv_A Putative peptidylprolyl 97.4 0.0018 6E-08 58.7 13.1 65 469-535 61-125 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.4 0.0014 4.9E-08 68.6 13.7 139 367-528 223-362 (370)
189 1ihg_A Cyclophilin 40; ppiase 97.3 0.0037 1.3E-07 65.4 15.4 139 332-491 223-361 (370)
190 3k9i_A BH0479 protein; putativ 97.3 0.00051 1.7E-08 58.4 7.2 85 345-430 3-89 (117)
191 1klx_A Cysteine rich protein B 97.3 0.0028 9.6E-08 55.7 12.2 112 416-538 9-128 (138)
192 2hr2_A Hypothetical protein; a 97.3 0.0032 1.1E-07 56.1 12.3 96 440-535 14-130 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00073 2.5E-08 69.9 9.4 148 367-535 179-327 (338)
194 1dce_A Protein (RAB geranylger 97.2 0.016 5.5E-07 64.2 20.3 174 347-525 44-244 (567)
195 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0014 4.7E-08 67.8 10.4 149 332-500 179-328 (338)
196 3n71_A Histone lysine methyltr 97.1 0.0068 2.3E-07 65.6 15.1 124 412-535 319-463 (490)
197 2l6j_A TPR repeat-containing p 97.1 0.00043 1.5E-08 57.8 4.4 63 438-500 5-67 (111)
198 2hr2_A Hypothetical protein; a 97.0 0.0083 2.8E-07 53.4 12.6 61 439-499 59-130 (159)
199 3n71_A Histone lysine methyltr 97.0 0.005 1.7E-07 66.6 13.3 124 376-499 318-463 (490)
200 2l6j_A TPR repeat-containing p 97.0 0.00093 3.2E-08 55.7 5.6 93 402-495 4-102 (111)
201 2kat_A Uncharacterized protein 96.9 0.005 1.7E-07 51.7 9.8 79 455-535 3-81 (115)
202 1klx_A Cysteine rich protein B 96.9 0.029 9.8E-07 49.1 15.0 111 274-397 9-127 (138)
203 1na3_A Designed protein CTPR2; 96.8 0.0091 3.1E-07 47.3 10.4 60 440-499 12-71 (91)
204 2kat_A Uncharacterized protein 96.7 0.0074 2.5E-07 50.7 9.5 78 421-499 4-81 (115)
205 1na3_A Designed protein CTPR2; 96.6 0.02 7E-07 45.1 11.3 61 369-430 11-71 (91)
206 3ma5_A Tetratricopeptide repea 96.4 0.0083 2.8E-07 49.0 7.6 60 472-533 8-67 (100)
207 1zu2_A Mitochondrial import re 96.4 0.01 3.4E-07 52.8 8.3 47 454-500 63-120 (158)
208 3ma5_A Tetratricopeptide repea 96.4 0.015 5.1E-07 47.4 9.0 65 436-500 6-70 (100)
209 1zu2_A Mitochondrial import re 96.2 0.0093 3.2E-07 53.0 7.1 85 449-535 14-119 (158)
210 3qww_A SET and MYND domain-con 95.7 0.055 1.9E-06 57.4 11.5 85 451-535 312-410 (433)
211 3ly7_A Transcriptional activat 95.4 0.15 5.2E-06 52.0 13.1 67 466-535 272-338 (372)
212 3qwp_A SET and MYND domain-con 95.4 0.15 5.1E-06 54.1 13.7 90 446-535 296-399 (429)
213 1wy6_A Hypothetical protein ST 95.4 1.1 3.7E-05 37.9 16.0 137 380-538 20-156 (172)
214 3qww_A SET and MYND domain-con 95.3 0.11 3.8E-06 55.0 12.1 85 415-499 311-410 (433)
215 2kc7_A BFR218_protein; tetratr 95.2 0.045 1.5E-06 44.1 7.1 55 446-500 9-64 (99)
216 3qwp_A SET and MYND domain-con 95.1 0.25 8.4E-06 52.4 14.1 91 409-499 294-399 (429)
217 1wy6_A Hypothetical protein ST 94.9 1.5 5E-05 37.1 15.1 134 344-501 19-155 (172)
218 2kc7_A BFR218_protein; tetratr 94.9 0.082 2.8E-06 42.5 7.8 53 412-465 10-63 (99)
219 3mkq_A Coatomer beta'-subunit; 94.9 0.36 1.2E-05 56.0 16.2 130 371-533 633-762 (814)
220 3ly7_A Transcriptional activat 94.6 0.77 2.6E-05 46.8 15.6 142 293-440 192-346 (372)
221 3bee_A Putative YFRE protein; 94.3 0.42 1.4E-05 38.1 10.4 68 468-537 3-73 (93)
222 3mkq_A Coatomer beta'-subunit; 94.0 0.92 3.1E-05 52.5 17.1 47 377-429 662-708 (814)
223 3bee_A Putative YFRE protein; 93.3 0.43 1.5E-05 38.1 8.8 66 436-501 5-73 (93)
224 1pc2_A Mitochondria fission pr 93.1 0.53 1.8E-05 41.2 9.5 81 453-535 14-99 (152)
225 1pc2_A Mitochondria fission pr 92.8 0.62 2.1E-05 40.8 9.6 82 418-500 14-100 (152)
226 3mkq_B Coatomer subunit alpha; 91.2 5 0.00017 36.0 13.7 48 376-429 14-61 (177)
227 2v5f_A Prolyl 4-hydroxylase su 90.4 1.6 5.5E-05 35.3 9.3 28 507-534 46-73 (104)
228 2v5f_A Prolyl 4-hydroxylase su 88.8 4.4 0.00015 32.6 10.8 26 473-498 48-73 (104)
229 3u64_A Protein TP_0956; tetrat 87.9 2.9 0.0001 40.8 10.3 98 159-259 178-282 (301)
230 2ff4_A Probable regulatory pro 87.7 3.1 0.00011 43.2 11.3 76 473-550 173-253 (388)
231 4ady_A RPN2, 26S proteasome re 87.3 27 0.00091 40.3 19.2 150 343-499 501-657 (963)
232 1nzn_A CGI-135 protein, fissio 86.9 4.9 0.00017 33.7 9.8 65 469-535 33-102 (126)
233 3u64_A Protein TP_0956; tetrat 86.3 4.9 0.00017 39.3 10.8 68 332-399 199-272 (301)
234 1nzn_A CGI-135 protein, fissio 85.9 5.3 0.00018 33.6 9.4 93 408-501 7-104 (126)
235 4b4t_P 26S proteasome regulato 85.8 38 0.0013 35.6 18.9 187 312-499 31-246 (445)
236 3mkq_B Coatomer subunit alpha; 84.0 23 0.0008 31.6 17.0 77 341-432 14-90 (177)
237 4gns_B Protein CSD3, chitin bi 83.7 10 0.00036 42.7 13.6 50 448-497 348-397 (754)
238 4gns_B Protein CSD3, chitin bi 82.0 5.3 0.00018 45.0 10.4 55 478-534 344-398 (754)
239 1v54_E Cytochrome C oxidase po 81.0 6 0.0002 31.5 7.2 59 420-478 28-86 (109)
240 2ff4_A Probable regulatory pro 80.1 6.2 0.00021 40.9 9.6 69 440-509 174-247 (388)
241 4h7y_A Dual specificity protei 78.0 19 0.00064 31.2 10.0 56 380-436 73-128 (161)
242 4h7y_A Dual specificity protei 77.6 35 0.0012 29.6 12.7 64 451-516 74-137 (161)
243 2wpv_A GET4, UPF0363 protein Y 76.9 60 0.0021 32.0 16.8 18 517-534 198-215 (312)
244 3lvg_A Clathrin heavy chain 1; 75.3 0.0028 9.7E-08 65.9 -16.8 200 369-618 56-276 (624)
245 1v54_E Cytochrome C oxidase po 72.8 34 0.0012 27.2 9.4 73 187-264 16-89 (109)
246 2y69_E Cytochrome C oxidase su 71.5 13 0.00046 31.2 7.2 59 420-478 71-129 (152)
247 2p58_C Putative type III secre 71.3 34 0.0012 27.1 8.9 89 156-258 19-107 (116)
248 4ady_A RPN2, 26S proteasome re 70.0 1.6E+02 0.0056 33.9 31.2 252 275-535 389-657 (963)
249 4fhn_B Nucleoporin NUP120; pro 69.7 24 0.00082 42.4 12.3 124 408-536 818-967 (1139)
250 3lpz_A GET4 (YOR164C homolog); 67.1 1.1E+02 0.0036 30.6 21.0 38 377-414 65-106 (336)
251 2uwj_G Type III export protein 66.5 32 0.0011 27.2 7.9 90 156-259 18-107 (115)
252 3esl_A Checkpoint serine/threo 65.7 37 0.0013 31.0 9.6 76 473-550 82-158 (202)
253 2p58_C Putative type III secre 63.5 47 0.0016 26.3 8.3 50 480-536 49-98 (116)
254 3txn_A 26S proteasome regulato 62.9 1.4E+02 0.0048 30.6 17.8 164 333-497 20-207 (394)
255 2y69_E Cytochrome C oxidase su 62.5 61 0.0021 27.4 9.4 73 187-264 59-132 (152)
256 3ffl_A Anaphase-promoting comp 61.7 81 0.0028 27.7 10.7 23 477-499 128-150 (167)
257 4fhn_B Nucleoporin NUP120; pro 60.2 63 0.0022 38.7 13.4 147 372-527 817-991 (1139)
258 4a1g_A Mitotic checkpoint seri 60.1 84 0.0029 27.2 10.5 99 114-213 31-134 (152)
259 2uwj_G Type III export protein 58.7 45 0.0015 26.4 7.5 52 479-537 47-98 (115)
260 2wpv_A GET4, UPF0363 protein Y 58.3 1.5E+02 0.005 29.3 20.4 131 315-464 75-215 (312)
261 4b4t_P 26S proteasome regulato 57.7 1.8E+02 0.0063 30.3 20.2 187 346-535 30-246 (445)
262 1zbp_A Hypothetical protein VP 57.5 1.4E+02 0.0047 28.7 12.4 54 480-535 6-59 (273)
263 3ffl_A Anaphase-promoting comp 54.9 70 0.0024 28.1 9.1 124 397-534 13-149 (167)
264 4b4t_R RPN7, 26S proteasome re 53.0 99 0.0034 32.2 12.0 60 369-428 133-194 (429)
265 2vs7_A I-DMOI, homing endonucl 47.3 40 0.0014 30.8 6.9 49 671-719 130-181 (199)
266 4a1g_A Mitotic checkpoint seri 47.3 46 0.0016 28.9 6.7 58 488-546 82-140 (152)
267 2wvi_A Mitotic checkpoint seri 47.2 54 0.0018 28.8 7.2 60 488-548 77-137 (164)
268 4b4t_R RPN7, 26S proteasome re 46.6 2.3E+02 0.0078 29.3 13.6 61 334-394 133-195 (429)
269 3o48_A Mitochondria fission 1 46.0 1.3E+02 0.0046 25.2 10.1 63 469-534 38-105 (134)
270 2dch_X Putative homing endonuc 45.8 13 0.00045 34.7 3.3 59 671-732 151-209 (216)
271 1zbp_A Hypothetical protein VP 45.0 57 0.002 31.3 7.6 71 447-517 7-78 (273)
272 3esl_A Checkpoint serine/threo 42.5 98 0.0033 28.2 8.4 54 160-213 95-148 (202)
273 3o48_A Mitochondria fission 1 42.1 1.6E+02 0.0053 24.8 9.8 66 330-395 38-106 (134)
274 2nsz_A Programmed cell death p 41.5 1.5E+02 0.0052 24.6 9.9 77 474-552 10-88 (129)
275 1k1a_A B-cell lymphoma 3-encod 41.5 29 0.00098 32.4 5.2 84 339-426 13-100 (241)
276 3eu9_A Huntingtin-interacting 39.5 13 0.00044 34.8 2.3 178 337-535 44-235 (240)
277 1wdy_A 2-5A-dependent ribonucl 39.4 13 0.00046 35.7 2.5 17 186-202 8-24 (285)
278 2wvi_A Mitotic checkpoint seri 39.2 65 0.0022 28.3 6.5 54 161-214 77-130 (164)
279 2zu6_B Programmed cell death p 38.2 50 0.0017 32.6 6.3 80 473-554 168-249 (307)
280 1x60_A Sporulation-specific N- 38.2 57 0.0019 24.3 5.4 35 671-705 18-52 (79)
281 1wdy_A 2-5A-dependent ribonucl 36.9 20 0.00068 34.4 3.3 176 337-527 41-236 (285)
282 2ion_A PDCD4, programmed cell 36.7 1.5E+02 0.0051 25.6 8.5 77 474-552 12-90 (152)
283 4fke_A Aminopeptidase N; zinc 36.1 4.9E+02 0.017 30.0 15.3 154 373-535 692-859 (909)
284 4aez_C MAD3, mitotic spindle c 35.5 95 0.0032 28.8 7.3 54 160-213 130-183 (223)
285 2nsz_A Programmed cell death p 34.8 1.1E+02 0.0036 25.6 7.0 65 370-435 10-76 (129)
286 2d2s_A Exocyst complex compone 34.1 2.2E+02 0.0077 26.6 9.9 28 470-497 90-117 (235)
287 3eiq_C Programmed cell death p 33.9 3.8E+02 0.013 26.9 14.4 68 370-438 220-289 (358)
288 1y8m_A FIS1; mitochondria, unk 33.1 2.3E+02 0.0078 24.1 12.2 66 468-535 36-105 (144)
289 4aez_C MAD3, mitotic spindle c 32.5 67 0.0023 29.8 5.7 61 488-549 131-192 (223)
290 1oai_A Nuclear RNA export fact 31.6 43 0.0015 23.6 3.3 23 485-507 34-56 (59)
291 1k1a_A B-cell lymphoma 3-encod 31.5 18 0.00062 33.8 1.9 24 188-211 14-37 (241)
292 1y8m_A FIS1; mitochondria, unk 30.1 2.6E+02 0.0088 23.8 11.8 66 330-395 37-105 (144)
293 3bu8_A Telomeric repeat-bindin 30.0 3.3E+02 0.011 25.0 10.6 49 313-361 88-143 (235)
294 2r9g_A AAA ATPase, central reg 28.0 3.4E+02 0.012 24.6 10.1 43 373-416 17-62 (204)
295 2ion_A PDCD4, programmed cell 28.0 94 0.0032 26.9 5.7 65 370-435 12-78 (152)
296 3eiq_C Programmed cell death p 27.8 4.7E+02 0.016 26.2 15.2 80 473-554 219-300 (358)
297 3ltm_A Alpha-REP4; protein eng 27.3 3.3E+02 0.011 24.2 18.5 154 330-499 31-184 (211)
298 3t8k_A Uncharacterized protein 26.6 54 0.0019 29.4 4.2 90 191-294 14-108 (186)
299 1uta_A FTSN, MSGA, cell divisi 25.5 75 0.0026 23.9 4.1 32 672-703 19-50 (81)
300 2b7e_A PRE-mRNA processing pro 25.4 58 0.002 23.0 3.0 33 234-267 2-35 (59)
301 2d2s_A Exocyst complex compone 23.7 4.2E+02 0.014 24.7 9.8 45 487-535 75-119 (235)
302 3rjo_A Endoplasmic reticulum a 23.5 6E+02 0.021 25.9 20.2 26 405-430 270-295 (419)
303 3jxi_A Vanilloid receptor-rela 22.8 48 0.0016 31.3 3.2 28 339-366 9-36 (260)
304 3ctd_A Putative ATPase, AAA fa 22.7 4.3E+02 0.015 24.1 9.0 45 372-416 37-84 (213)
305 3lvg_A Clathrin heavy chain 1; 22.6 0.21 7.2E-06 52.2 -14.1 119 401-532 198-316 (624)
306 3kae_A CDC27, possible protein 22.6 3.2E+02 0.011 24.1 7.7 112 473-605 34-148 (242)
307 3txn_A 26S proteasome regulato 22.1 6.3E+02 0.022 25.6 24.6 89 305-393 107-207 (394)
308 3eu9_A Huntingtin-interacting 21.9 23 0.0008 32.9 0.6 9 189-197 48-56 (240)
309 4fke_A Aminopeptidase N; zinc 21.0 9.8E+02 0.034 27.4 18.1 94 409-506 693-793 (909)
310 3bge_A Predicted ATPase; struc 20.8 3.5E+02 0.012 24.4 7.9 44 373-416 10-56 (201)
311 1in0_A YAJQ protein, HI1034; a 20.6 1.7E+02 0.0057 25.4 5.5 78 636-715 66-144 (163)
312 3t8k_A Uncharacterized protein 20.5 76 0.0026 28.3 3.8 95 154-255 13-110 (186)
313 3aji_A 26S proteasome non-ATPa 20.4 36 0.0012 31.4 1.6 19 187-205 10-28 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-35 Score=335.70 Aligned_cols=450 Identities=10% Similarity=-0.045 Sum_probs=331.8
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004324 113 RAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYM 190 (761)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 190 (761)
..++..+.+.+....+..+++.+.. ..|+..++..+ .|.+.|++++|..+|+.+.. .+++..+++.++.+|
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHH
Confidence 3556677788888888888776653 45777777666 88899999999999998864 366899999999999
Q ss_pred HhcCChhHHHHHHHH-HHHC--------------CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 191 GKERKFAKCRDIFDD-IINQ--------------GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~-m~~~--------------g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
.++|++++|.++|++ ++.. |..++..+|+.++.+|. +.|++++|+++|++|.+. .|+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT---NLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---Cchhh
Confidence 999999999999995 3332 23446899999999999 799999999999999985 35433
Q ss_pred H-HHHHHHHHHc--------------------------------CCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004324 256 L-HNSLFRALVS--------------------------------KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (761)
Q Consensus 256 t-~~~ll~~~~~--------------------------------~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (761)
+ +..+...+.. .......|++++|.++|+++.+. .++..++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 3 2222211100 11122346777888888777655 35555555554
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
..+.+.|++++|..+|++|.+.+. .+..+++.++.+|.+.|++++|.++++++.+... .+..+|+.++.+|.+.|+
T Consensus 313 --~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 313 --DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTC
T ss_pred --HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhcc
Confidence 677777778888888887776543 2566777778888888888888888887776543 357777778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777642 2356778888888888888888888888877654 34667777788888888888888888888
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
+.+..+.+..+|+.++.+|.+.|++++|.++|++|.+. + ..|+ ..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ-SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77655567777888888888888888888888877664 3 4566 677888888888888888888888877753
Q ss_pred CCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHH
Q 004324 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 537 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~ 614 (761)
+ |+ +..+|..+...|...|++++|.+.++ ++++|++...+..++++
T Consensus 546 ~----p~----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 546 S----TN----------------------------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp S----SC----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred C----CC----------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 2 21 25667778888888888888888887 77888888888887776
Q ss_pred HH
Q 004324 615 YD 616 (761)
Q Consensus 615 ~~ 616 (761)
|.
T Consensus 594 ~~ 595 (597)
T 2xpi_A 594 LE 595 (597)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-35 Score=335.67 Aligned_cols=444 Identities=10% Similarity=0.006 Sum_probs=376.4
Q ss_pred CcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004324 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (761)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l 221 (761)
++...|..+ .+.+.|++++|..+|+.|... .|+..++..++.+|.+.|++++|..+|+.+... .++..+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 344444444 678999999999999999954 557789999999999999999999999998543 5699999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLG--------------GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~--------------g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~ 287 (761)
+.+|. +.|++++|+++|+++.... |..++..+|+.+..++.+. |++++|..+|++|.
T Consensus 157 ~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 157 AFCLV---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL------SNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHH---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHH
T ss_pred HHHHH---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 99999 7999999999999643221 2345689999999999986 69999999999998
Q ss_pred HcCCCcCHHHHHHHH------------------------------------HHHhhccCCCHHHHHHHHHHHHHcCCCCC
Q 004324 288 TSGLEIQKDIYSGLI------------------------------------WLHSYQDNIDKERISLLKKEMQQAGFEEG 331 (761)
Q Consensus 288 ~~~~~p~~~~~~~li------------------------------------~~~~~~~~g~~~~a~~l~~~m~~~g~~p~ 331 (761)
+.+.. +...+..+. .+..+.+.|++++|.++|++|.+. .++
T Consensus 228 ~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~ 304 (597)
T 2xpi_A 228 MVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKS 304 (597)
T ss_dssp HHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGC
T ss_pred HhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cch
Confidence 87643 223322221 135677889999999999998765 579
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
..+++.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|++|.+. .+.+..+|+.++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 999999999999999999999999999987754 7788999999999999999999999999865 35578999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999854 3468899999999999999999999999999866778999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
++|++|.+.. +.+..+|+.++..|.+.|++++|.++|++|.+. .|+ .+..|+.
T Consensus 462 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------------~~~~p~~ 514 (597)
T 2xpi_A 462 EYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL----VKK---------------------TQSNEKP 514 (597)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHH---------------------SCCCSGG
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----hhc---------------------cccchhh
Confidence 9999999874 557899999999999999999999999999863 111 0011111
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhh
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHR 642 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~ 642 (761)
...+|..+..+|...|++++|...++ +.+.|++...|..++.+|.+.|++++|.. .++++++.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~l~~ 579 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT--------HLHESLAI 579 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH--------HHHHHHhc
Confidence 16789999999999999999999998 78899999999999999999999888876 36776654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2.1e-31 Score=292.81 Aligned_cols=205 Identities=14% Similarity=0.203 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 004324 315 RISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE---------FM 384 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~ 384 (761)
.+..+.+++.+.++.+.. .+++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666655443 35677777777777777777777777777777777777777777776654 57
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred h-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 465 E-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 465 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
+ |+.||..||++||++|++.|++++|.++|++|.+.| +.|+..||++++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 7 888888888888888888888888888998888888 888888888888888763
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.5e-31 Score=291.16 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhh
Q 004324 197 AKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~-~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~ 275 (761)
..+..++.++.+++..+.. ..++.+|++|+ |.|++++|+++|++|.+. |+.||.+|||+||.+|++...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~---k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~------ 76 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCS---KKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEA------ 76 (501)
T ss_dssp -----------------CHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCC------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCc------
Confidence 4566777888888766544 46899999999 899999999999999998 899999999999999987521
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004324 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (761)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 355 (761)
. ......+..++|.++|++|...|+.||..||++||.+|++.|++++|.++|
T Consensus 77 ~----------------------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 77 A----------------------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp C----------------------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred h----------------------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 112344557888899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (761)
++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 004324 436 LMPSYINLTNMYLNL 450 (761)
Q Consensus 436 d~~t~~~li~~~~~~ 450 (761)
+..||+.|+..|+..
T Consensus 209 s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 209 SKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.7e-23 Score=225.18 Aligned_cols=359 Identities=13% Similarity=0.069 Sum_probs=237.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|+.+...|. +.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~---~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK---ERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---HCC
Confidence 4557788888888888888774 5567777777788888888888888888777653 336778888888888 688
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (761)
++++|+..|+++.+. .|+ ..+|..+..++... |++++|...|+++.+.+... ...+.. ....+...|
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~-~~~~~~--l~~~~~~~g 149 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAA------GDMEGAVQAYVSALQYNPDL-YCVRSD--LGNLLKALG 149 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH------SCSSHHHHHHHHHHHHCTTC-THHHHH--HHHHHHTTS
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCc-HHHHHH--HHHHHHHcc
Confidence 888888888888764 354 34566666666654 47778888887777654321 122222 224555666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
++++|..+|+++.+.. .-+..+|..+...+.+.|++++|.+.|+++.+.++. +...|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777766542 123566666667777777777777777776665533 45566666666777777777777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH
Q 004324 392 EMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (761)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (761)
+..... +-+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+..+.+.
T Consensus 228 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 228 RALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 665542 2245666666666677777777777776666643 22355666666666666666666666666665555566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666542 34456666666666666666666666666653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.9e-23 Score=222.34 Aligned_cols=375 Identities=11% Similarity=0.037 Sum_probs=312.9
Q ss_pred hhcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 004324 120 CKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (761)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (761)
-..+..+.+...+..+.. ..|+....... .+...|+++.|..+++...+.. +.+..+|..+...|.+.|++
T Consensus 10 ~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 355667777766655443 45766554433 6778999999999999999875 77899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhH
Q 004324 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYL 276 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~ 276 (761)
++|...|+++.+... .+..+|..+..++. +.|++++|++.|+++.+. .|+.......+..+.... |++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~-----g~~ 151 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALV---AAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKAL-----GRL 151 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTT-----SCH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-----cCH
Confidence 999999999988532 24667999999999 799999999999999974 587776666666665555 499
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004324 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (761)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 356 (761)
++|...|+++.+.... +..++..+. ..+...|++++|...|+++.+... -+...+..+...+...|++++|...++
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 152 EEAKACYLKAIETQPN-FAVAWSNLG--CVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999887543 344555444 778899999999999999988642 257788999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 357 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
+..+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 99887643 67899999999999999999999999998863 3357789999999999999999999999999864 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
..+++.+...|.+.|++++|...++++.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +-+...|..+...
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHH
Confidence 89999999999999999999999999998767789999999999999999999999999999863 3456778777777
Q ss_pred HHhCC
Q 004324 517 YLSSG 521 (761)
Q Consensus 517 ~~~~g 521 (761)
+...|
T Consensus 383 ~~~~~ 387 (388)
T 1w3b_A 383 LKEMQ 387 (388)
T ss_dssp HHHTC
T ss_pred HHHcc
Confidence 66655
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-20 Score=207.59 Aligned_cols=409 Identities=10% Similarity=0.021 Sum_probs=317.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|...|+.+.+.. |+..++..+..+|.+.|++++|...|+++.+.+. .+..+|..+..+|. +.|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g 87 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE---GLG 87 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH---HTT
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH---HHh
Confidence 5668899999999999999975 5899999999999999999999999999988653 36778999999999 799
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-------------------CC-
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-------------------LE- 292 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-------------------~~- 292 (761)
++++|+..|+++.... .++......++..+... .....+.+.+..+...+ ..
T Consensus 88 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG--DFNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp CHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHH------HHHHHHTTC---------------------------CCC
T ss_pred hHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999862 34444444444444331 12222222221111100 00
Q ss_pred -----------------------cCHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHH-----cCCCC--------CHH
Q 004324 293 -----------------------IQKDIYSGLIWLHSYQ---DNIDKERISLLKKEMQQ-----AGFEE--------GKE 333 (761)
Q Consensus 293 -----------------------p~~~~~~~li~~~~~~---~~g~~~~a~~l~~~m~~-----~g~~p--------~~~ 333 (761)
|+. ....+.....+. +.|++++|..+|+++.. ..-.| +..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCH-HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcH-HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111 222222223222 48999999999999987 31122 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
++..+...+...|++++|.+.++.+.+.... ..+|..+...|...|++++|...|+++.... +.+..+|..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 7788889999999999999999999988754 8889999999999999999999999998753 346778999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
..|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999864 335678999999999999999999999999875566788999999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCC
Q 004324 494 FNHMHSDQTIGVN----TRSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (761)
Q Consensus 494 ~~~m~~~g~~~p~----~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 566 (761)
|+++.....-.++ ..+|..+...|.. .|++++|.+.|+++.+. +|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~----------------------- 447 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL----DPR----------------------- 447 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH----CTT-----------------------
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh----Ccc-----------------------
Confidence 9998775311122 3489999999999 99999999999999863 232
Q ss_pred CchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 567 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
+..+|..+...+...|+.++|...++ +.+.|++......+..
T Consensus 448 -----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 448 -----SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 15567778888899999999999998 8889998776655543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=5.3e-19 Score=193.82 Aligned_cols=342 Identities=15% Similarity=0.077 Sum_probs=237.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004324 163 GFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYN 242 (761)
Q Consensus 163 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~ 242 (761)
+...+..+.... +.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..+|. +.|++++|+..|+
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~---~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL---AMGKSKAALPDLT 84 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH---HCCCHHHHHHHHH
Confidence 444445555443 5577788888888888888888888888887753 236778888888888 6888888888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHhhccCCCHHHHHHH
Q 004324 243 RMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK---DIYSGLIWLHSYQDNIDKERISLL 319 (761)
Q Consensus 243 ~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~g~~~~a~~l 319 (761)
++.+.. ..+...+..+...+... |++++|...|+++.+.+.. +. ..+..+.. .+
T Consensus 85 ~al~~~--p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~--~~------------ 141 (450)
T 2y4t_A 85 KVIQLK--MDFTAARLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIK--SD------------ 141 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHH--HH------------
T ss_pred HHHhcC--CCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH--HH------------
Confidence 888752 23455666666666664 5888888888888765532 11 22222211 00
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
....+..+...+.+.|++++|.+.|+.+.+.... +..++..+..+|.+.|++++|.++|+++.+.. +
T Consensus 142 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 208 (450)
T 2y4t_A 142 -----------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-N 208 (450)
T ss_dssp -----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-C
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 0112233445567778888888888877776533 56777778888888888888888888776642 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL------------TNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.+..+|..+...|...|++++|...|+++.+.. +.+...+..+ ...|.+.|++++|...|+.+.+..
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 467778888888888888888888888887643 2233344333 788999999999999999998732
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc-Ch
Q 004324 468 RPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI-ES 542 (761)
Q Consensus 468 ~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~ 542 (761)
+.+ ..+|..+...|.+.|++++|...++++.... +.+..+|..+..+|...|++++|...|+++.+. .| ++
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 233 4588899999999999999999999998763 447899999999999999999999999999852 23 34
Q ss_pred HHHHHHHHH
Q 004324 543 AWMEKLDYV 551 (761)
Q Consensus 543 ~~~~~~~~~ 551 (761)
..+..+..+
T Consensus 364 ~~~~~l~~~ 372 (450)
T 2y4t_A 364 QIREGLEKA 372 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=9e-19 Score=192.01 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=244.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
+...|..+...+. +.|++++|+.+|+++.+. ...+..++..+..++... |++++|...|+++.+.+.
T Consensus 25 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p-- 91 (450)
T 2y4t_A 25 DVEKHLELGKKLL---AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAM------GKSKAALPDLTKVIQLKM-- 91 (450)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCC--
Confidence 4566777777777 577777777777777764 233455555555555543 356666666555554332
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHH
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT---PAF 370 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~ 370 (761)
.+..++..+..+|.+.|++++|.+.|+.+.+..+. +. ..+
T Consensus 92 ------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 134 (450)
T 2y4t_A 92 ------------------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQ 134 (450)
T ss_dssp ------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHH
T ss_pred ------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 13455556666666666666666666666655422 22 344
Q ss_pred HHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004324 371 VYK------------MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP 438 (761)
Q Consensus 371 ~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 438 (761)
..+ ...|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 433 455889999999999999998763 4478889999999999999999999999999864 45689
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY------------LESLKNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
++..+..+|...|++++|...|+.+.+..+.+...+..+ ...|.+.|++++|..+|+++.... |+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~ 289 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PS 289 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc
Confidence 999999999999999999999999987556667777666 899999999999999999999854 55
Q ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhh
Q 004324 507 -----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (761)
Q Consensus 507 -----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~ 581 (761)
...|..+...+.+.|++++|+..++++.+. +|+ +..+|..+..
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~p~----------------------------~~~~~~~l~~ 337 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPD----------------------------NVNALKDRAE 337 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----Ccc----------------------------cHHHHHHHHH
Confidence 458899999999999999999999999852 332 2667888999
Q ss_pred hhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhh
Q 004324 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 582 ~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~ 620 (761)
+|...|++++|...++ +.+.|++...+..++.+....++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999 88999999999988876665544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.3e-19 Score=197.99 Aligned_cols=408 Identities=11% Similarity=0.012 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
...+..+...+.+.|++++|...|+++.+.. ||..+|..+..+|. +.|++++|+..|+++.+.. +.+...+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV---SVGDLKKVVEMSTKALELK--PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhccC--hHHHHHHHH
Confidence 4456677788999999999999999999875 79999999999999 7999999999999999852 234567777
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-------------
Q 004324 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------------- 326 (761)
Q Consensus 260 ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------------- 326 (761)
+..++... |++++|...|+++...+...+......+. ..........+.+.+..+...
T Consensus 79 l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 79 RASANEGL------GKFADAMFDLSVLSLNGDFNDASIEPMLE---RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHSSSCCGGGTHHHHH---HHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHH------hhHHHHHHHHHHHHhcCCCccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 77777775 59999999999998887533222211111 000100011111111111000
Q ss_pred ------CCC------------------------CC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCC---
Q 004324 327 ------GFE------------------------EG-KEVLLSVLRVCAK---EGDVEDAEKTWLRLLE-----SDNG--- 364 (761)
Q Consensus 327 ------g~~------------------------p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~g~~--- 364 (761)
... |+ ...+......+.. .|++++|..+|+++.+ ..-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 000 11 3333344444443 8999999999999988 4111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 365 -----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 365 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
.+..+|..+...|...|++++|...|+++.+.. |+..+|..+...|...|++++|...++.+.+.. +.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 135678888999999999999999999998864 448889999999999999999999999998864 346778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
+..+...|...|++++|...|+.+.+..+.+..+|..+...|...|++++|..+|+++.+.. +.+..+|..+...|.+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999988666678899999999999999999999999998863 4467899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhh---hhhhhHHHHHH
Q 004324 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI---ESDEKRKRHMI 596 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~ 596 (761)
.|++++|...|+++.+. .|.. .... ....+|..+...+.. .|+++.|...+
T Consensus 385 ~~~~~~A~~~~~~a~~~----~~~~--------------------~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIEL----ENKL--------------------DGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp TTCHHHHHHHHHHHHHH----HHTS--------------------SSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hhcc--------------------chHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 99999999999999852 1210 0000 002367778888888 99999999999
Q ss_pred H--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhh
Q 004324 597 R--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHR 642 (761)
Q Consensus 597 ~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~ 642 (761)
+ +.+.|++...+..++.+|.+.|++++|.. .+.+.++.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~~~~a~~~ 478 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT--------LFEESADL 478 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH--------HHHHHHHh
Confidence 8 88899999999999999999999888876 35665554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=5e-17 Score=182.40 Aligned_cols=399 Identities=10% Similarity=0.050 Sum_probs=275.3
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+. .+..+|..+...+. +.|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g 107 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE---SLG 107 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHT
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH---HcC
Confidence 4567888888888888888875 66788888888888888888888888888877642 26777888888887 688
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHc------CCCcCHHHHHHHH----
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS------GLEIQKDIYSGLI---- 302 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li---- 302 (761)
++++|+..|+.+ . ..|+.... .+..+... +...+|..+++.+... ...|+........
T Consensus 108 ~~~~A~~~~~~~-~---~~~~~~~~--~~~~~~~~------~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 108 NFTDAMFDLSVL-S---LNGDFDGA--SIEPMLER------NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp CHHHHHHHHHHH-C----------------CHHHH------HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHH-h---cCCCCChH--HHHHHHHH------HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 888888888633 2 23443221 12222222 3566777777777442 1122222221111
Q ss_pred ------------------------HHHhhcc--------CCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHH
Q 004324 303 ------------------------WLHSYQD--------NIDKERISLLKKEMQQAGFEEG--------KEVLLSVLRVC 342 (761)
Q Consensus 303 ------------------------~~~~~~~--------~g~~~~a~~l~~~m~~~g~~p~--------~~~~~~ll~~~ 342 (761)
....+.. .+++++|..+|+++.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 0011111 13677888888887764 333 23466666777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
...|++++|.+.++.+.+..+ +..+|..+...|...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 888888888888888887653 47778888888888888888888888887653 335777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-
Q 004324 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ- 501 (761)
Q Consensus 423 ~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 501 (761)
..++++.+.. +.+..++..+...|...|++++|...++++.+..+.+..+|..+...|...|++++|.+.|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 8888888754 23457788888888888888888888888887556677788888888888888888888888876532
Q ss_pred ---CCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCc
Q 004324 502 ---TIGVNTRSCNIILSAYLSS----------GDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLS 568 (761)
Q Consensus 502 ---~~~p~~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (761)
........+..+...|.+. |++++|...|++..+. +|+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~p~------------------------- 460 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL----DPR------------------------- 460 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH----CTT-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh----CCC-------------------------
Confidence 0111223344445666666 8888888888888752 232
Q ss_pred hhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 569 SEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 569 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
+..+|..+...+...|+.++|...++ +.+.|.....
T Consensus 461 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 461 ---SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 25567778888899999999999998 7888876654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=3.1e-17 Score=184.15 Aligned_cols=397 Identities=12% Similarity=0.055 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
...+..+...+.+.|++++|...|+++.+... .+..+|..+..+|. +.|++++|++.|+++.+.. +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYI---STGDLEKVIEFTTKALEIK--PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC--CchHHHHHH
Confidence 45677788889999999999999999988643 37889999999999 7999999999999999852 234556666
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCCCHH
Q 004324 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEEGKE 333 (761)
Q Consensus 260 ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p~~~ 333 (761)
+...+... |++++|...|+.+ .....+....+ ..+...+....|...++++... ...|+..
T Consensus 99 la~~~~~~------g~~~~A~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 99 RASANESL------GNFTDAMFDLSVL-SLNGDFDGASI------EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHH-C-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHH-hcCCCCChHHH------HHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 66666654 5999999999633 32222111111 2223334457788888777442 1233333
Q ss_pred HHHH--------------------------HHHHHH------------hcCChHHHHHHHHHHHhCCCCCC------HHH
Q 004324 334 VLLS--------------------------VLRVCA------------KEGDVEDAEKTWLRLLESDNGIP------TPA 369 (761)
Q Consensus 334 ~~~~--------------------------ll~~~~------------~~g~~~~a~~~~~~m~~~g~~~~------~~~ 369 (761)
.... +..++. ..|++++|..+++.+.+..+... ..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 2221 111211 22588999999999998764311 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
|..+...|...|++++|...|++..+. .|+..+|..+...|...|++++|...++++.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 667778889999999999999999886 4668889999999999999999999999999864 3468889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.|++++|...|+++.+..+.+..+|..+...|...|++++|.++|+++.+.. +.+...|..+...|...|++++|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999987556677899999999999999999999999999874 45678999999999999999999999
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh----------hhhhHHHHHHH--
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----------SDEKRKRHMIR-- 597 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~-- 597 (761)
|+++.+.. |.. ..... ....+..+...+... |++++|...++
T Consensus 401 ~~~a~~~~----~~~--------------------~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 401 YDIAKRLE----EVQ--------------------EKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp HHHHHHHH----HHC--------------------SSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC----Ccc--------------------hhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 99998632 221 00000 012223333445566 99999999998
Q ss_pred hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 598 FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+.+.|++...+..++.+|.+.|++++|..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 88899999999999999999999888876
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=209.08 Aligned_cols=162 Identities=10% Similarity=0.134 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLE---SDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
-..|||++|++||+.|++++|.++|++|.+ .|+.||+++||+||++||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHH
Q 004324 408 IIELLCKAEE-TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLES 480 (761)
Q Consensus 408 li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~ 480 (761)
||.++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+.+-++... ++..++.|+ ..+.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr----kv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH----KVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG----GGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH----HhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 4789999999999999999999999998877764444333 332244443 5566777888
Q ss_pred HHhcC---------CHHHHHHHHHH
Q 004324 481 LKNAG---------NIEKAEEIFNH 496 (761)
Q Consensus 481 ~~~~g---------~~~~A~~l~~~ 496 (761)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 88766 24566666654
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=8.9e-20 Score=204.93 Aligned_cols=150 Identities=6% Similarity=0.099 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQ---ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 442 (761)
-..+||+||++||++|++++|.++|++|. .+|+.||++|||+||.|||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35789999999999999999999998876 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC------HHHHHHHH
Q 004324 443 LTNMYLNLGM-HDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN------TRSCNIIL 514 (761)
Q Consensus 443 li~~~~~~g~-~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~------~~t~~~li 514 (761)
||+++|+.|+ .++|.++|++|.+ |+.||..+|++++.++.+.+-+ +..+++.. + +.|+ ..|...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv~P-~-f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKVKP-T-FSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGGCC-C-CCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHhCc-c-cCCCCCCcccccchHHHH
Confidence 9999999998 5889999999998 9999999999999888775444 44444422 2 4443 55666677
Q ss_pred HHHHhCC
Q 004324 515 SAYLSSG 521 (761)
Q Consensus 515 ~~~~~~g 521 (761)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777666
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=4.3e-15 Score=156.73 Aligned_cols=319 Identities=15% Similarity=0.092 Sum_probs=253.1
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.+..+-..+... |++++|...|+++.+.... +..++..+ +..+...|++++|...|+++.+.. .-+...+
T Consensus 5 ~~~~~~~~~~~~------g~~~~A~~~~~~~l~~~p~-~~~~~~~~--a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 5 KHLELGKKLLAA------GQLADALSQFHAAVDGDPD-NYIAYYRR--ATVFLAMGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTT-CHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcc-cHHHHHHH--HHHHHHccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 344444455554 5999999999999886643 34444443 477888899999999999998763 2267888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYK------------MEAYAKIGEFMKSLEIFREMQERLGSAS 401 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (761)
..+..+|...|++++|.+.++.+.+..+. .+...+..+ ...+...|++++|.++|+++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999887641 134445444 588899999999999999998763 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH----
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY---- 477 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l---- 477 (761)
...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..+.+..++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 7889999999999999999999999999864 45688999999999999999999999999987555566655433
Q ss_pred --------HHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 478 --------LESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 478 --------i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
...+.+.|++++|...|+++.... +.+. ..|..+...|.+.|++++|.+.+++..+. +|+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-- 304 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM----EPD-- 304 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----Ccc--
Confidence 667899999999999999998864 2233 23556778999999999999999999863 332
Q ss_pred HHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhh
Q 004324 546 EKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~ 620 (761)
+..+|..+...+...|+.++|...++ +.+.|++......+..++...++
T Consensus 305 --------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 305 --------------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 15567778888889999999999998 88999998888888887766543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=1.5e-14 Score=152.63 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=105.7
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
.+...|++++|..+++++.+.. ..+..++..+..++...|++++|.+.++.+.+..+. +..+|..+...|...|++++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555432 123445555555555555555555555555554322 44455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
|...|++..+.. +.+...+..+... . .......+...+.+.|++++|...++.+.+
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555554431 1112211111000 0 000111224456666666666666666665
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 KCRPNR----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+.+. ..|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222233 224445666777777777777777766653 33566777777777777777777777777764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=9.6e-16 Score=159.88 Aligned_cols=280 Identities=8% Similarity=-0.064 Sum_probs=237.2
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EF 383 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~ 383 (761)
..+...|++++|..+|+++.+... .+..++..++.++...|++++|..+++++.+..+. +...|..+...|...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhH
Confidence 566677999999999999987642 24556667888899999999999999999987643 6788999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (761)
++|.+.|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++.
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998753 3357789999999999999999999999999864 334567778999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..+.+..++..+...|...|++++|...|++...... .+.+..+|..+...|.+.|++++|...|++..+.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 987778899999999999999999999999999876310 1335679999999999999999999999999863
Q ss_pred CCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHH
Q 004324 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 537 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~ 614 (761)
.|+ +..+|..+...+...|+.++|...++ +.+.|++...+..++..
T Consensus 266 ----~~~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 266 ----IPQ----------------------------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ----STT----------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ----Ccc----------------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 222 25667778888999999999999999 88999999888999888
Q ss_pred HH-hhhh
Q 004324 615 YD-QYHE 620 (761)
Q Consensus 615 ~~-~~g~ 620 (761)
+. ..|+
T Consensus 314 ~~~~~g~ 320 (330)
T 3hym_B 314 IEMYIGD 320 (330)
T ss_dssp HHTTTTC
T ss_pred HHHHhCc
Confidence 84 4443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.2e-13 Score=154.69 Aligned_cols=410 Identities=9% Similarity=0.040 Sum_probs=291.0
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
.+.|+++.|..+|+.+.+. +|.+...|..++..+.+.|++++|..+|++.... .|++..|...+.-... ..|+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~--~~~~~ 96 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE--TKGKL 96 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--HTTTS
T ss_pred HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--Hccch
Confidence 4678999999999999987 5778999999999999999999999999999886 4788888888764322 35666
Q ss_pred HHHHH----HHHHHHhcCCCCCC-HHHHHHHHHHHHcCCC---CCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-
Q 004324 235 DEACS----IYNRMIQLGGYQPR-PSLHNSLFRALVSKPG---GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH- 305 (761)
Q Consensus 235 ~~A~~----l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~- 305 (761)
++|.+ +|++....-|..|+ ...|...+....+..+ ....|+++.|..+|++.++........++.......
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 66654 78777654355554 4566666554432100 011379999999999998732111122332221100
Q ss_pred ----------hhccCCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc----CCh----HH
Q 004324 306 ----------SYQDNIDKERISLLKKEMQQ------AG---FEEG--------KEVLLSVLRVCAKE----GDV----ED 350 (761)
Q Consensus 306 ----------~~~~~g~~~~a~~l~~~m~~------~g---~~p~--------~~~~~~ll~~~~~~----g~~----~~ 350 (761)
.....+++..|..++.++.. .. +.|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 00123456677777765321 11 2343 24555554433222 232 36
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEFM-------KSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
|..+|++.....+. +...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 77889988886543 67889888888876 69987 89999999876323446888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 004324 417 ETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKAEEI 493 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l 493 (761)
++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+..+.+...|...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999999984 454 35899999999999999999999999987433344444333322 3468999999999
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
|++..+.. +-+...|..++..+.+.|+.++|..+|++..... ..+|. ...
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~---------------------------~~~ 463 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPE---------------------------KSG 463 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGG---------------------------GCH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHH---------------------------HHH
Confidence 99988863 4468899999999999999999999999998642 11222 125
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhcccc
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNEN 603 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~ 603 (761)
.+|...+.....+|+.+.+..+.+ .+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 678888888888899999988877 566664
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=9e-16 Score=163.03 Aligned_cols=290 Identities=9% Similarity=-0.051 Sum_probs=224.6
Q ss_pred cCCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 309 DNIDKERISL-LKKEMQQAGF-EE--GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 309 ~~g~~~~a~~-l~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..|++++|.. .|++...... .| +...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3466788877 7665443211 11 3456778889999999999999999999988654 6788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN---------------LTNMYLN 449 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---------------li~~~~~ 449 (761)
+|.+.|+++.+.. +.+..+|..+...|...|++++|...++++.+..-. +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999998764 447888999999999999999999999999985421 1112211 2334448
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|++++|...|+++.+..+. +..+|..+...|.+.|++++|...|+++.... +.+..+|..+...|.+.|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999873333 78999999999999999999999999998864 456889999999999999999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccc-
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENS- 604 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~- 604 (761)
..|+++.+. +|+ +..+|..+...+...|++++|...++ +.+.|++
T Consensus 272 ~~~~~al~~----~~~----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 272 AAYRRALEL----QPG----------------------------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHH----CTT----------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHh----CCC----------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 999999862 332 25667788888999999999999988 7777776
Q ss_pred ----------hhhHHHHHHHHHhhhhccCCCCccccCCcccc
Q 004324 605 ----------RMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVI 636 (761)
Q Consensus 605 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~ 636 (761)
...+..++.+|...|++++|.. ...++...|
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~ 360 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGA-ADARDLSTL 360 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHH-HHTTCHHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHH-hHHHHHHHH
Confidence 6789999999999999999875 233443333
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-14 Score=151.41 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHH
Q 004324 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (761)
Q Consensus 217 ~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (761)
.+..+...+. ..|++++|+++|+++.+.. ..+...+..+...+... |++++|..+++++.+.... +..
T Consensus 24 ~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~-~~~ 91 (330)
T 3hym_B 24 VVVSLAERHY---YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVEL------NKANELFYLSHKLVDLYPS-NPV 91 (330)
T ss_dssp THHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTT-STH
T ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHh------hhHHHHHHHHHHHHHhCcC-CHH
Confidence 3444444444 3455555555555555431 11222222233333322 3555555555555443321 112
Q ss_pred HHHHHHHHHhhccCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNI-DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (761)
Q Consensus 297 ~~~~li~~~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 375 (761)
.+..+ +..+...| ++++|...|++..... ..+..++..+..++...|++++|.+.++.+.+.... +...+..+..
T Consensus 92 ~~~~l--~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 92 SWFAV--GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHH--HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHH--HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 22222 23444455 5666666666655432 113455666667777777777777777777665533 3455566777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------MKPLMPSYINLTNMY 447 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~ 447 (761)
.|...|++++|.+.|++..+.. +.+...|..+...+...|++++|...+++..+.. ...+..++..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 7777777777777777766542 3355667777777777777777777777766531 122345667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-HhCCC
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY-LSSGD 522 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~-~~~g~ 522 (761)
.+.|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence 777777777777777766444566677777777777777777777777776653 33556666666666 34444
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.2e-12 Score=144.92 Aligned_cols=344 Identities=15% Similarity=0.080 Sum_probs=232.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CCC
Q 004324 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQ 231 (761)
Q Consensus 157 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~-~~~ 231 (761)
.++++.|...|+...+.| +...+..|-..|.. .+++++|.++|++..+.| +...+..|-..|... +..
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 677788888888777776 55666777777777 777888888888777764 556666666666610 005
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc--
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD-- 309 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-- 309 (761)
+++++|+..|++..+. | +...+..+-..+....| ..++.++|...|++..+.| +...+..+. ..+..
T Consensus 129 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg--~~y~~g~ 197 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDG--VTRDYVMAREWYSKAAEQG---NVWSCNQLG--YMYSRGL 197 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTT---CHHHHHHHH--HHHHHTS
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHHHHHHHH--HHHhcCC
Confidence 6788888888877765 3 33444444444443111 1137778888887777765 233333333 22332
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 004324 310 --NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK---- 379 (761)
Q Consensus 310 --~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 379 (761)
.++.++|...|++..+.| +...+..+...|.. .+++++|.+.|+...+.| +...+..+...|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 677788888887777654 55666667777765 677788888887777765 45666667677776
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-----EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG--- 451 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 451 (761)
.++.++|.+.|++..+.| +...+..+-..|... ++.++|...+++..+.| +...+..|...|.+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 777788888887776654 455666666677666 77888888887777765 4566677777776655
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDF 523 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~ 523 (761)
+.++|.++|++..+. .+...+..|...|.. .+++++|.++|++..+.| +...+..|...|.+ .++.
T Consensus 346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCH
Confidence 667777777777652 456777777777777 677888888888777766 56677777777777 7778
Q ss_pred HHHHHHHHHHHHc
Q 004324 524 VKAEKIYDLMCLK 536 (761)
Q Consensus 524 ~~A~~~~~~m~~~ 536 (761)
++|..+|++..+.
T Consensus 420 ~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 420 VQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 8888888777753
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=5.6e-12 Score=139.55 Aligned_cols=354 Identities=13% Similarity=0.025 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----CC
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV----QG 232 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~----~g 232 (761)
..+...+....+.| +...+..|-..|.. .+++++|...|++..+.| +...+..|-..|. . .+
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~g~~~ 93 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYM---NGEGVPQ 93 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTSSSCC
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCCCCCC
Confidence 33466666666766 67777788888887 899999999999998875 6777888877777 5 78
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh--hccC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS--YQDN 310 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~ 310 (761)
+.++|++.|++..+. | +...+..+-..+....| ..+++++|...|++..+.|. ...+..+..++. ....
T Consensus 94 ~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNG--VKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCC
Confidence 999999999999885 3 44455555555554211 11489999999999988873 344444432222 2237
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 004324 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGE 382 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 382 (761)
++.++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998875 68888889999988 899999999999999887 57788888888887 899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-----GMH 453 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-----g~~ 453 (761)
.++|..+|++..+.| +...+..+-..|.. .++.++|...|++..+.| +...+..|...|... ++.
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998764 56777778778887 899999999999998875 567888888999887 899
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKA 526 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A 526 (761)
++|...|.+..+. .+...+..|...|...| ++++|.++|++..+.| +...+..|-..|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998872 45678888999998877 7899999999999987 78899999999998 8999999
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHhh
Q 004324 527 EKIYDLMCLKKYEIESAWMEKLDYVLSL 554 (761)
Q Consensus 527 ~~~~~~m~~~g~~~~~~~~~~~~~~~~l 554 (761)
.++|++..+.| ++..+..++.++..
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 99999999876 46665666665544
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=6e-16 Score=162.08 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=140.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC
Q 004324 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~ 270 (761)
-+.|++++|.++++++.. ..+|..|..++. +.|++++|++.|.+. +|..+|..++.++...
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l---~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~--- 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQL---QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS--- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHH---HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhC---
Confidence 367889999999999943 348999999999 799999999999642 5667888888887764
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
|++++|...+....+. .+++.+.+.++ .+|.+.|+++++.++++ .|+..+|..+...|...|++++
T Consensus 75 ---g~~EeAi~yl~~ark~--~~~~~i~~~Li--~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 75 ---GNWEELVKYLQMARKK--ARESYVETELI--FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred ---CCHHHHHHHHHHHHHh--CccchhHHHHH--HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 6999999977766653 34466677777 88889999999988885 3788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
|...|..+ ..|..+++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999976 36999999999999999999999988 2789999999999999999999655443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC---
Q 004324 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV--- 505 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~p--- 505 (761)
+.....-...++..|.+.|++++|..+++..+..-+.....|+-|.-+|++- +++.+.+++|..-. + ++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--n-i~k~~~ 277 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--N-IPKVLR 277 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--C-HHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--c-CcHHHH
Confidence 2233334557999999999999999999999874477788999998888886 35666666665322 2 444
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 506 ---NTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
+...|.-+.-.|.+.++++.|...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 456799999999999999988763
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=7.4e-15 Score=155.92 Aligned_cols=290 Identities=11% Similarity=-0.025 Sum_probs=208.8
Q ss_pred CCCHHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhh
Q 004324 231 QGCLDEACS-IYNRMIQLGGYQP--RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (761)
Q Consensus 231 ~g~~~~A~~-l~~~m~~~~g~~p--~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (761)
.|++++|++ .|++......-.| +...+..+-..+... |++++|...|+++.+.... +..++..+ +..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l--~~~~ 108 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE------GDLPNAVLLFEAAVQQDPK-HMEAWQYL--GTTQ 108 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT------TCHHHHHHHHHHHHHSCTT-CHHHHHHH--HHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHH--HHHH
Confidence 466677776 6665443211111 223344444445443 4777777777777766532 33333333 3666
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY--------------- 372 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--------------- 372 (761)
...|++++|...|+++.... ..+..++..+..+|...|++++|.+.++.+.+..... ...+..
T Consensus 109 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 109 AENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------C
T ss_pred HHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHH
Confidence 77778888888888777654 2367788888888888888888888888888765432 222211
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+..+...|++++|...|+++.+..... +..+|..+...|.+.|++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcC
Confidence 2344448899999999999998763221 47889999999999999999999999998864 345789999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----------HHHHHHHHHHHHhC
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----------TRSCNIILSAYLSS 520 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-----------~~t~~~li~~~~~~ 520 (761)
++++|...|+++.+..+.+..+|..+...|.+.|++++|...|+++.... +.+ ..+|..+..+|.+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHHHh
Confidence 99999999999987556788999999999999999999999999987743 222 68999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMC 534 (761)
Q Consensus 521 g~~~~A~~~~~~m~ 534 (761)
|++++|..++++-.
T Consensus 344 g~~~~A~~~~~~~l 357 (368)
T 1fch_A 344 GQSDAYGAADARDL 357 (368)
T ss_dssp TCGGGHHHHHTTCH
T ss_pred CChHhHHHhHHHHH
Confidence 99999999887443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.9e-14 Score=152.73 Aligned_cols=272 Identities=12% Similarity=-0.011 Sum_probs=215.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
++..+..+.+.|++++|..+|+++.... ..+..++..+..+|.+.|++++|.+.|+++.+..+. +..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 3444577788899999999999998864 336889999999999999999999999999987643 68899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSAS-----------VPAYHKIIELLCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMY 447 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~ 447 (761)
.|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+..-. ++..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999999997642 22 223445678899999999999999999986422 2688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
...|++++|...|+++.+..+.+..+|+.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998667789999999999999999999999999999864 446889999999999999999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
..|+++.+. .|..... .....+..+..+|..|..++...|+.+.+..+.+
T Consensus 302 ~~~~~al~~----~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSL----QRKSRNQ----------------QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHH----HHCC----------------------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHh----CcccCCC----------------cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999862 2211000 0000011136788999999999999999888765
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=5.1e-15 Score=157.23 Aligned_cols=258 Identities=9% Similarity=-0.049 Sum_probs=212.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...+.+.|++++|.++|+.+.+..+. +..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455888899999999999999999999988654 68899999999999999999999999998763 346889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPL-----------MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIY 477 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd-----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~l 477 (761)
.|...|++++|...++++.+.. |+ ...+..+...|.+.|++++|...|+++.+..+. +..+|..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998743 22 233445688899999999999999999874333 79999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK 557 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~ 557 (761)
...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|+..|+++.+. +|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~-------------- 279 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI----QPG-------------- 279 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--------------
Confidence 999999999999999999999874 557899999999999999999999999999863 333
Q ss_pred hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhcccc------------chhhHHHHHHHHHhhhhccC
Q 004324 558 EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNEN------------SRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~------------~~~~~~~l~~~~~~~g~~~~ 623 (761)
+..+|..+...+...|+.++|...++ +.+.|+ +...+..++.++...|+.+.
T Consensus 280 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 280 --------------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred --------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 15678888888999999999999998 666666 24567888999999998876
Q ss_pred CCC
Q 004324 624 PSF 626 (761)
Q Consensus 624 a~~ 626 (761)
+..
T Consensus 346 a~~ 348 (365)
T 4eqf_A 346 FQA 348 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=6.3e-13 Score=148.80 Aligned_cols=410 Identities=12% Similarity=0.086 Sum_probs=278.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 004324 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ 246 (761)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~ 246 (761)
++..++.. +.+..+|..++. +.+.|++++|+.+|+++.+.. +-+...|...+..+. +.|++++|..+|++...
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~---~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEI---KAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Confidence 44555553 668899999998 478999999999999999863 236778999999998 78999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCCCCchhhHHH----HHHHHHHHHHc-CCCcC-HHHHHHHHHHHh-------hccCCCH
Q 004324 247 LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQ----AEFIFHNLLTS-GLEIQ-KDIYSGLIWLHS-------YQDNIDK 313 (761)
Q Consensus 247 ~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~----A~~~~~~m~~~-~~~p~-~~~~~~li~~~~-------~~~~g~~ 313 (761)
. .|+...|...+.......| +.+. +..+|+..+.. |..|+ ...+..++.... +...|+.
T Consensus 75 ~---~p~~~lw~~~~~~~~~~~~-----~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K---VLHIDLWKCYLSYVRETKG-----KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T---CCCHHHHHHHHHHHHHHTT-----TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c---CCChHHHHHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 4 4887777666653332222 3444 44577776543 54443 344444332221 1125779
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCC-----
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVC-------------AKEGDVEDAEKTWLRLL------ESD---NGIP----- 366 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~~~----- 366 (761)
++|..+|++.......+....|....... .+.+++..|..++.++. +.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999988732111123343322211 13456777877776632 221 2333
Q ss_pred ---HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HH
Q 004324 367 ---TPAFVYKMEAYAKI----GEF----MKSLEIFREMQERLGSASVPAYHKIIELLCK-------AEETE-------LT 421 (761)
Q Consensus 367 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A 421 (761)
...|...+..--.. ++. .+|..+|++.... .+-+...|......+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 24566555433322 232 3778889888765 34467788888888775 68877 89
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 422 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..++++..+.-.+-+...|..++..+.+.|++++|..+|+++.+..+.+. ..|..++..+.+.|++++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988632233588899999999999999999999999987433343 58999999999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHH
Q 004324 501 QTIGVNTRSCNIILSA-YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 501 g~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 579 (761)
. +.+...|...... +...|+.++|.++|++.++. .|+ +..+|..+
T Consensus 386 ~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~----~p~----------------------------~~~~~~~~ 431 (530)
T 2ooe_A 386 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK----YGD----------------------------IPEYVLAY 431 (530)
T ss_dssp T--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HTT----------------------------CHHHHHHH
T ss_pred c--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----CCC----------------------------CHHHHHHH
Confidence 3 2233333332222 34689999999999998852 222 25678888
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchh----hHHHHHHHHHhhhhccCCCC
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRM----HSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~----~~~~l~~~~~~~g~~~~a~~ 626 (761)
+......|+.++|+.+++ +...|.++. .+...+......|+.+.+..
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888999999999998 555444432 45555666666776666553
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=8.8e-16 Score=160.81 Aligned_cols=280 Identities=11% Similarity=0.050 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|++++|.++++++. ++.+++.+ +.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~L--a~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQL--AKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHH--HHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 48999999999993 23455544 4999999999999999965 3588899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 3457889999999999999999999885 378889999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. + ++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~--~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----V--HADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----T--CHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----h--CHhhHHHH
Confidence 37999999999999999999999988 389999999999999999999976665533 2 33335579
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHH
Q 004324 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (761)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 593 (761)
+..|.+.|++++|+.+++..+. .++..+. ..+--.++.+--+-+++.+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~----le~ah~~--------------------------~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALG----LERAHMG--------------------------MFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----STTCCHH--------------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhC----CcHHHHH--------------------------HHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999998873 3333211 122222333333344555555
Q ss_pred HHHH--hhccc-----cchhhHHHHHHHHHhhhhccCCCC
Q 004324 594 HMIR--FQFNE-----NSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 594 ~~~~--~~l~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+.+. +.+.| ++...+.-++-+|...++|+.|..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 5554 44444 455566666777777777766654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=2e-14 Score=149.61 Aligned_cols=229 Identities=12% Similarity=-0.040 Sum_probs=144.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
+..+..+...|++++|..+|+++.+... .+..++..+..++...|++++|.+.++++.+.... +..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHc
Confidence 3334556667777777777777766532 25666677777777777777777777777766432 566677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKI--------------IE-LLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
|++++|.+.|+++.+... .+...+..+ .. .+...|++++|..+++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 777777777777765421 122222222 11 2555666677777777666643 235566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.|.+.|++++|...+.++.+..+.+..+|..+...|...|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHH
Confidence 67777777777777766665445556666666777777777777777777666643 3345666666666777777777
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|.+.|+++.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=6.2e-14 Score=145.84 Aligned_cols=258 Identities=6% Similarity=-0.062 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
.+..+...+...|++++|.++|+++.+..+. +..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455666777788888888888887776543 56777777888888888888888888877652 336677777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINL--------------TN-MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
..|++++|.+.++++.+..- .+...+..+ .. .+...|++++|...++++.+..+.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 88888888888888776431 111222222 22 366777888888888887765556777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh-
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK- 557 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~- 557 (761)
..|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. ..++..+..++.++...++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888877753 3456778888888888888888888888877532 2233433333332221110
Q ss_pred -----hhcccccCCCc---------hhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 558 -----EVKKPVSLNLS---------SEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 558 -----~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
.++........ ...+..+|..+...+...|+.+.|..+++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000000000 00035667777777777788887777765
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=6.9e-12 Score=145.88 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=255.9
Q ss_pred ccCCcchhhhhHHHhccCChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004324 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHW-YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (761)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~ 219 (761)
...|+.++..+-++...|.+.+|.++++.+.-.+. +.-+....+.|+....|. +..+..++.++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 46788898888888899999999999999995542 335667788888777777 556777776666533 2 22
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
-+-..+. ..|.+++|..+|++... .....+.++... |++++|.++.++.. ++.++.
T Consensus 1054 eIA~Iai---~lglyEEAf~IYkKa~~------~~~A~~VLie~i---------~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAI---SNELFEEAFAIFRKFDV------NTSAVQVLIEHI---------GNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCC------HHHHHHHHHHHH---------hhHHHHHHHHHhcC------CHHHHH
Confidence 2444555 68999999999998521 122234454432 48999999988762 245555
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.+. .++...|++++|...|.+. -|...|..++.+|.+.|++++|.+.+....+... +....+.++.+|++
T Consensus 1110 qLA--KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1110 QLA--KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 1179 (1630)
T ss_pred HHH--HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHh
Confidence 554 8899999999999999653 3788899999999999999999999988777653 33344469999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|+++.|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 99998644332 2 357778888999999999999999999984 4899999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+++. .+..+|..+-.+|...|++..|........ .+...+..++..|.+.|.+++|+.+++..+
T Consensus 1244 arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1244 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9876 577999999999999999999998876532 256677799999999999999999997665
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=4.5e-14 Score=144.49 Aligned_cols=264 Identities=8% Similarity=-0.024 Sum_probs=155.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
..|++..|+..++.... ..|+. .....+..+|...|+++.|...++. . -.|+..++..+...|.+.|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 45566666666554322 23332 2334556677777777776664432 1 234555666666777777777777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 387 LEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 387 ~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
++.++++...+..| +...+..+...+.+.|++++|.+.+++ ..+..++..++..|.+.|++++|.+.|+.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776655434 344445555667777777777777665 34566677777777777777777777777765
Q ss_pred CCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh
Q 004324 466 KCRPNRT-I--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (761)
Q Consensus 466 ~~~p~~~-~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 542 (761)
.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|+..|++..+. +|
T Consensus 159 ~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p 231 (291)
T 3mkr_A 159 QD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK----DS 231 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred hC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence 22 3321 1 122333344456777777777777766 3556677777777777777777777777776642 22
Q ss_pred HHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhH-HHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKR-KRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
+ +..+|..+...+...|+.++ +.+.++ +.+.|+++. +.++..+.+
T Consensus 232 ~----------------------------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~ 279 (291)
T 3mkr_A 232 G----------------------------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKEN 279 (291)
T ss_dssp T----------------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHH
T ss_pred C----------------------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHH
Confidence 2 13445555556666666654 445554 666777654 334455555
Q ss_pred hccC
Q 004324 620 EWLH 623 (761)
Q Consensus 620 ~~~~ 623 (761)
.+++
T Consensus 280 ~fd~ 283 (291)
T 3mkr_A 280 DFDR 283 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.60 E-value=1.7e-13 Score=140.16 Aligned_cols=246 Identities=10% Similarity=0.043 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|++..|...++.... ..|+...-.......++...|+.+.|+..++. .-.|+..++..+...+...++.++|.+
T Consensus 13 g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 589999988876543 33444333334445788899999999987654 245677888999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 354 TWLRLLESDNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 354 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..+...|.+.|++++|.+.++.+.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999877545 456677788999999999999999987 4688899999999999999999999999999864
Q ss_pred CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 433 MKPLMPSY---INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 433 ~~pd~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
|+.... ..++..+...|++++|..+|+++.+..+.+...|+.+..+|.+.|++++|...|++..... +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 553211 2233445556899999999999998778899999999999999999999999999998874 457889
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHH
Q 004324 510 CNIILSAYLSSGDFVK-AEKIYDLMCL 535 (761)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~ 535 (761)
+..++..+...|+.++ +.++++++.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999976 6789999985
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=5.8e-12 Score=138.56 Aligned_cols=354 Identities=10% Similarity=-0.025 Sum_probs=239.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CC--CCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL----GG--YQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~----~g--~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m 286 (761)
....||.|-..+. ..|++++|++.|++..+. .+ ..| ...+|+.+-..+... |++++|...+++.
T Consensus 50 ~a~~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~------g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM------GRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc------CChHHHHHHHHHH
Confidence 3456777777776 578888888888776431 01 133 346777777777765 6999999999887
Q ss_pred HHcC------CC-cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhcCChHHHHHHH
Q 004324 287 LTSG------LE-IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRV---CAKEGDVEDAEKTW 355 (761)
Q Consensus 287 ~~~~------~~-p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~---~~~~g~~~~a~~~~ 355 (761)
.+.. .. ....++............+++++|...|++..+. .|+ ...+..+..+ +...++.++|.+.+
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5421 01 1234555444334455667899999999998875 444 4444444444 45668888999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
++..+..+. +..++..+...+.. .|+.++|.+++++..... +.+..++..+...|...|++++|...+++..+.
T Consensus 199 ~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 988887643 56666666655555 467889999999887753 346778999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 432 GMKPLMPSYINLTNMYLNL-------------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
. +-+..++..+...|... +..+.|...|....+..+.+..+|..+...|...|++++|.+
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 4 33466777776666432 235677777777776445667788899999999999999999
Q ss_pred HHHHhhhCCCCCCCHH----HHHHHHH-HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 493 IFNHMHSDQTIGVNTR----SCNIILS-AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 493 l~~~m~~~g~~~p~~~----t~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
.|++..+.. |+.. .+..+.. .+.+.|++++|+..|++..+ +.|+.
T Consensus 356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~----------------------- 405 (472)
T 4g1t_A 356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKS----------------------- 405 (472)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCC-----------------------
T ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccc-----------------------
Confidence 999988764 3332 2222222 34578999999999998875 23321
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+ .+..+.+..+++ +..+|.++..+..++.+|...|++++|..
T Consensus 406 ------~~~---------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 406 ------REK---------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp ------HHH---------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred ------HHH---------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 001 112223334444 67789999999999999999999999986
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.5e-11 Score=135.32 Aligned_cols=380 Identities=13% Similarity=0.040 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 004324 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-----G---RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248 (761)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g---~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~ 248 (761)
......||.|...+...|++++|++.|++-.+. + -....++|+.+-..|. ..|++++|+..|++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~---~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY---HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHh
Confidence 344678999999999999999999999876531 1 1224678999999998 6999999999998876420
Q ss_pred -----CCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH-HHhhccCCCHHHHHHHHH
Q 004324 249 -----GYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNIDKERISLLKK 321 (761)
Q Consensus 249 -----g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g~~~~a~~l~~ 321 (761)
...++ ..+++..-.++..... +++++|...|++.++.... +...+..+.. ...+...++.++|++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG----NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11222 2344433223322111 4899999999999887643 3333333332 233455677788888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004324 322 EMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (761)
Q Consensus 322 ~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (761)
+..+... .+..++..+...+.. .|++++|.+.+++..+..+. +..++..+...|.+.|++++|...|++..+..
T Consensus 200 ~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 200 QAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 8776532 245566666555554 46788999999998887654 67889999999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 398 GSASVPAYHKIIELLCKA-------------------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 398 ~~p~~~t~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+-+..+|..+...|... +..++|...++...+.. +.+..++..+...|...|++++|..
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 33556666665555322 23567888888877754 3345678889999999999999999
Q ss_pred HHHHHHhCCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRT---IYGIYLE-SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 459 ~~~~m~~~~~p~~~---~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|++..+...++.. .+..+.. .+...|+.++|+..|++..+. .|+...+...+ ..+.+++++..
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l 423 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHH
Confidence 99998863222221 2333332 345679999999999999885 46644332222 23344444444
Q ss_pred HcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHH
Q 004324 535 LKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRR 612 (761)
Q Consensus 535 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~ 612 (761)
+ .+|. +..+|..|...+...|+.++|...++ +++.|.++.+...++
T Consensus 424 ~----~~p~----------------------------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 424 S----KNGA----------------------------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp H----HCC-----------------------------CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred H----hCCC----------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2 2332 26678888888999999999999998 777787776655443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-12 Score=129.40 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=115.6
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--P----TPAFVYKMEAYA 378 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~~li~~~~ 378 (761)
..+...|++++|..+|++..+.. .+..++..+..+|...|++++|.+.++...+..... + ..+|..+...|.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 44555556666666666555554 455555555666666666666666665555432211 1 345555555666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+.|++++|...|++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...|...|++++|..
T Consensus 91 ~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666666666555543 2332 23344455555555555555532 1123445555555555555555555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|++..+..+.+..+|..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.|++..
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555554334455555555555555555555555555555542 2334555555555555555555555555554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.5e-12 Score=126.63 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--FEEG----KEVLLSVLRVCAKEGD 347 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~~~~~ll~~~~~~g~ 347 (761)
|++++|...|++..+.. .+..++..+. ..+...|++++|...+++..... ..|+ ..++..+..+|.+.|+
T Consensus 19 ~~~~~A~~~~~~a~~~~--~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH--KDITYLNNRA--AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHS--CCTHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhh--ccHHHHHHHH--HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 45555555555555444 3333333332 44445555555555555544321 1111 2444555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
+++|.+.|+.+.+.. |+ ...+.+.|++++|...++++.... +.+...|..+...+...|++++|...+++
T Consensus 95 ~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555555555555432 22 123444455555555555554431 11233444455555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 428 FVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 428 m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..+.. +.+..++..+...|.+.|++++|...|+...+..+.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 165 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 165 MIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55432 223445555555555555555555555555443334455555555555555555555555555444
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.6e-11 Score=122.39 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+...|++++|.+.++++.+.... +..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456777888888999999999999988887543 67888889999999999999999999988763 3367788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
|...|++++|.++++++.+.+..| +...+..+...|...|++++|...|.++.+..+.+..++..+...|...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988744455 4667888888999999999999999998875566788999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..+|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998864 567788888999999999999999999999863
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1e-11 Score=121.01 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
.++...+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|...|++..+.. +-+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 346667788888899999999999999999887754 67888889999999999999999999988763 3356788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 409 IELLCKA-----------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 409 i~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
...+... |++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 8889888 99999999999998853 2357788899999999999999999999998833 889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998864 4567888899999999999999999988764
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1.4e-11 Score=124.41 Aligned_cols=257 Identities=8% Similarity=0.025 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIEL 411 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~ 411 (761)
.+......+...|++++|.+.|+.+.+..+. +...+..+...|...|++++|...|++..+..-.|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455667788899999999999998887643 455788888899999999999999999887432222 3458888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+..+.+..+|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 3356789999999999999999999999998766677888888883444456999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCc
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGD---FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLS 568 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (761)
+.|++..+.. +.+...+..+...+...|+ +++|...|++..+.. ...|+. .
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-----------------------~ 216 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAK-----------------------Y 216 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGG-----------------------G
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hccccc-----------------------c
Confidence 9999999874 4457888888888888888 888999999887521 011110 0
Q ss_pred hhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 569 SEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 569 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
...-..+|..+...+...|+.++|...++ +.++|+++...-.+..+....
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 00013567778888889999999999998 899999988777666555443
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=4.2e-11 Score=116.68 Aligned_cols=201 Identities=13% Similarity=0.061 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+..++..+...+...|++++|.+.++.+.+.... +...|..+...|...|++++|.+.|++..+.. +.+..+|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456777788888888888888888888876543 57788888888888999999999998887753 336778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 411 LLCKA-EETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
.|... |++++|...++++.+.+..|+ ..++..+...|...|++++|...|.++.+..+.+...+..+...|.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 999999999988888433343 5678888888999999999999999888755667888999999999999999
Q ss_pred HHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|.++|+++.... + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999988763 4 4777888888888899999999999998875
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=6.5e-12 Score=126.94 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=121.7
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
....|++++|+..|+++.+..... +..++..+..+|...|++++|.+.|+++.+..+. +..+|..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 345566777777777766653211 2445666666666777777777777766665432 456666666666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (761)
++|.+.|++..+.. +.+..+|..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...+...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777666666542 224555666666666666666666666666653 233333333333344445555555555555
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
....+++...+. ++..+...++.++|.+.+++..... |+ ..+|..+...|.+.|++++|...|++..
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN---TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc---ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443333333333 4444444555555555555554432 11 3445555555555555555555555555
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=3.4e-11 Score=120.03 Aligned_cols=208 Identities=6% Similarity=-0.025 Sum_probs=178.8
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 376 (761)
...++..+..+...|++++|...|+++.... ..+..++..+..+|...|++++|.+.++++.+.... +...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3444455577888999999999999998764 336788999999999999999999999999987643 67889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 455 (761)
|.+.|++++|.++|+++...+..| +...|..+...|...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743445 45678889999999999999999999999864 3468889999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
|...++.+.+..+.+...+..+...|.+.|++++|.++++++.+.. |+...+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY---PGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCCHHH
Confidence 9999999988667888999999999999999999999999998864 554443
No 44
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A
Probab=99.43 E-value=7.1e-14 Score=133.57 Aligned_cols=103 Identities=30% Similarity=0.516 Sum_probs=94.6
Q ss_pred ccccCCcccchh-hhhhccCccceeeeeeeCCccc------CCCcEEEEecc-CHHHHHHHHHHHh-hcCCceeEeecCc
Q 004324 627 KFWPKGRLVIPK-LIHRWLTPRALAYWFMYGGHRT------SVGDILLKLKV-SSEGIALVFKTLK-ARSLDCRVKKKGR 697 (761)
Q Consensus 627 ~~~~~a~~~~~~-m~~~g~~Pd~~ty~~li~g~~~------~~~~~~~~~~g-~~~e~~~l~~~m~-~~gl~~~~~~~~~ 697 (761)
.|+.++.++++. .+++.++|-+++||+|.||+.. .++.+..+|++ +.+|+..|.+.+. .+||+|++.++++
T Consensus 115 ~FY~~~~K~IP~~~I~~~LTP~aLA~W~MDDGs~~~~~~~~~~~gi~L~T~sFt~~ev~~L~~~L~~kf~L~~~i~~~~~ 194 (235)
T 3c0w_A 115 LFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKN 194 (235)
T ss_dssp TTBSSSSBCCCTTHHHHHCCHHHHHHHHHHHEEESCCSTTCCCCCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETT
T ss_pred hheeCCEEECCHHHHHHhcCHHHHHheEECCCccccccccCCCCcEEEEeCCCCHHHHHHHHHHHHHhcCeEEEEEecCC
Confidence 577889999999 9999999999999999999973 45677777778 9999999999996 6699999999999
Q ss_pred EEEEEEeCCCHHHHHHhhccccchhhhhcccC
Q 004324 698 VFWIGFLGSNSTLFWKLIEPYVLDELKEDLLN 729 (761)
Q Consensus 698 ~~~i~i~~~~~~~~~~li~~~~~~~m~~~~~~ 729 (761)
+|+|+|++++...|+++|.||++|+|+||++.
T Consensus 195 ~y~Iyi~~~s~~~f~~lI~PYi~psM~YKl~~ 226 (235)
T 3c0w_A 195 KPIIYIDSMSYLIFYNLIKPYLIPQMMYKLPN 226 (235)
T ss_dssp EEEEEECGGGHHHHHHHHGGGCCGGGGGGCC-
T ss_pred EEEEEEeHHHHHHHHHHhhhhccHhHHhhcCC
Confidence 99999999999999999999999999999976
No 45
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=6e-10 Score=129.94 Aligned_cols=363 Identities=10% Similarity=0.061 Sum_probs=231.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-CCCC
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQ----GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-YQPR 253 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~~p~ 253 (761)
|...|+.+++- +-+-=+.+.++.... ...|+.+ ...+.+|. ..|.+.+|++++++..-... +.-+
T Consensus 952 d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeV--s~~vKaf~---~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 952 DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEV--SVTVKAFM---TADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHh--HHHHHHHH---hCCCHHHHHHHHHHHHcCCCccccc
Confidence 77777776621 112333455543332 2345544 45666777 57888889888888874311 1123
Q ss_pred HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHH
Q 004324 254 PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE 333 (761)
Q Consensus 254 ~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 333 (761)
...-+.++.+..+. +..+......+..... .++ .+..+...|.+++|..+|++.. -...
T Consensus 1022 ~~LqnlLi~tAIka-------D~~Rv~eyI~kLd~~d-~~e--------IA~Iai~lglyEEAf~IYkKa~-----~~~~ 1080 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-------DRTRVMEYINRLDNYD-APD--------IANIAISNELFEEAFAIFRKFD-----VNTS 1080 (1630)
T ss_pred HHHHHHHHHHHHHh-------ChhhHHHHHHHhhhcc-HHH--------HHHHHHhCCCHHHHHHHHHHcC-----CHHH
Confidence 34555565555554 3444444444443111 111 1244556788888888888742 1222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
..+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+- -|...|.-++.+|.
T Consensus 1081 A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1081 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN 1145 (1630)
T ss_pred HHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH
Confidence 2333332 6778888888877552 3577888888888888888888888553 36777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++...|..+.+.|...|++++|..+
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888888888777644 33333445888888888877543332 1 45667777788888888888888888
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH------hhhhhhhcccccCCC
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL------SLNRKEVKKPVSLNL 567 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~ 567 (761)
|... ..|..+...|.+.|++++|.+.+++.. ++.++.....+. .+++.... ....
T Consensus 1218 Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl---~Iiv 1278 (1630)
T 1xi4_A 1218 YNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGL---HIVV 1278 (1630)
T ss_pred HHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHH---hhhc
Confidence 8774 268888888888888888888888763 344433322221 12211110 0000
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
++-.+..++.-|...|.+++|...++ ++++|.+...+.-++.+|++.
T Consensus 1279 ----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1279 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 13345577778899999999999999 888999888888888888764
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.4e-11 Score=124.51 Aligned_cols=248 Identities=11% Similarity=-0.025 Sum_probs=194.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 272 SKYYLQQAEFIFHNLLTSGLEIQ-KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
..|++++|...|+++.+.....+ .....+...+..+...|++++|...|++...... .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45899999999999998753222 3344455556888999999999999999988642 368899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999987643 5788999999999999999999999999875 35555555566666778999999999988887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR----PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
.. .++...+ .++..+...+..++|...+....+..+ .+..+|..+...|.+.|++++|...|++..... |+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN---VH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---ch
Confidence 53 3344444 477778888899999999998875211 125789999999999999999999999999864 53
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 333355677888888888776
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=1.7e-11 Score=121.30 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
...+|..+...+...|++++|...|+++.+.... +...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777777888889999999999888876543 67788888888999999999999999887763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
.|...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+..+.+...+..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999988864 346778888889999999999999999998875567888999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.|+++.... +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999988864 45688899999999999999999999999986
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=7.4e-12 Score=123.92 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
....|..+...+.+.|++++|...|+++.+. .+.+...|..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4567788888999999999999999999875 33468889999999999999999999999999864 346888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.|...|++++|.+.++++.+..+.+..+|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988667788999999999999999999999999998874 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhcccc
Q 004324 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNEN 603 (761)
Q Consensus 526 A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~ 603 (761)
|.++|+++.+. .|. +..+|..+...+...|+.++|...++ +.+.|+
T Consensus 178 A~~~~~~~~~~----~~~----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQ----DPG----------------------------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHH----CTT----------------------------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh----Ccc----------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999863 222 14567778888899999999999998 888999
Q ss_pred chhhHHHHHHHHHh
Q 004324 604 SRMHSVLRRYLYDQ 617 (761)
Q Consensus 604 ~~~~~~~l~~~~~~ 617 (761)
+...+..+..+...
T Consensus 226 ~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 226 HMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHTC----
T ss_pred hHHHHHHHHHHHhh
Confidence 88776665554433
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=4e-10 Score=113.90 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..++..+...|...|++++|.+.|++..+.+ +..++..+...|.. .|++++|.+.|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555555532 34455555555555 555555555555555543 4455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 408 IIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 408 li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+. .+...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 5555555 555555555555555543 44555555555555 55555665555555541 14445555555
Q ss_pred HHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHH
Q 004324 480 SLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCL 535 (761)
Q Consensus 480 ~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~ 535 (761)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 5555 556666666666555554 44555555555555 5566666666655554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.4e-10 Score=112.96 Aligned_cols=210 Identities=10% Similarity=0.009 Sum_probs=177.1
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 376 (761)
...+...+..+...|++++|...|+++.+.. ..+..++..+...|...|++++|.+.++.+.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3334445577888999999999999998764 335788999999999999999999999999887643 67889999999
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 377 YAKI-GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 377 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 454 (761)
|... |++++|...|+++.+.+..|+ ...|..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999988433343 5778899999999999999999999999864 335888999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 455 RLHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 455 ~a~~~~~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+|...++.+.+..+ .+...+..+...+...|+.++|..+++.+.... |+......
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF---PYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 99999999987545 788889999999999999999999999998753 55444433
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=6.2e-10 Score=112.45 Aligned_cols=216 Identities=6% Similarity=-0.019 Sum_probs=193.2
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 356677889999999999998843 56788889999999 999999999999999987 67889999999999
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004324 380 ----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (761)
Q Consensus 380 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-- 449 (761)
.+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999999999999998875 78889999999999 999999999999999976 67788889999998
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----
Q 004324 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---- 519 (761)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---- 519 (761)
.+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCc
Confidence 89999999999998863 367889999999999 999999999999999987 47788888999998
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 004324 520 SGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g 537 (761)
.+++++|.+.|++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999999754
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=6.3e-11 Score=125.38 Aligned_cols=249 Identities=9% Similarity=0.026 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
...|..+..++.+.|++++|.+.++++++..+. +..+|+.+...|.+.|+ +++|+..|++..+.. +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888889999999999999999988754 68899999999999997 999999999998863 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN-AGNIEK 489 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~g~~~~ 489 (761)
++...|++++|+..|+++++.. .-+..+|..+..++.+.|++++|...|+++++..+.+...|+.+...|.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999864 34688999999999999999999999999998667789999999999999 666577
Q ss_pred H-----HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccc
Q 004324 490 A-----EEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (761)
Q Consensus 490 A-----~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 562 (761)
| ++.|++..... +-+...|+.+...+.+.| ++++|++.+.++ + .+|+.
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~p~~------------------ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PSHSS------------------ 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TTCCC------------------
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cCCCC------------------
Confidence 7 58899988864 446789999999999988 689999999887 2 23321
Q ss_pred ccCCCchhhHHhHHHHHhhhhhhhh---------hhhHHHHHHH-h--hccccchhhHHHHHHHHHhh
Q 004324 563 VSLNLSSEQRENLIGLLLGGLCIES---------DEKRKRHMIR-F--QFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 563 ~~~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~-~--~l~p~~~~~~~~l~~~~~~~ 618 (761)
..++..|...+...| ..++|..+++ + +++|....+|..++..+...
T Consensus 309 ----------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 309 ----------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 455556666666653 3588888888 4 78999998998888877653
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=2.3e-11 Score=118.49 Aligned_cols=190 Identities=9% Similarity=-0.081 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+..+.+...|..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34445555555555555555555555555432 22345555555555555555555555555554334455566666666
Q ss_pred HHhc-----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 481 LKNA-----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 481 ~~~~-----------g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
|.+. |++++|...|++..+.. +-+...|..+...|...|++++|+..|++..+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-------- 150 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT-------- 150 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc--------
Confidence 6666 77777777777776653 2345667777777777777777777777776533 12
Q ss_pred HHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 550 YVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+|..+...+...|+.++|...++ +.+.|++...+..++.+|...|++++|..
T Consensus 151 -----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 151 -----------------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 3345555566667777777777776 66777777777777777777777777765
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=4.1e-11 Score=128.54 Aligned_cols=301 Identities=12% Similarity=-0.010 Sum_probs=222.1
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHH
Q 004324 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPA 369 (761)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~ 369 (761)
..+..+..+...|++++|...|++....... + ..++..+...|...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344557788899999999999999886322 3 357788889999999999999999886553 2111 2457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTESL 424 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~~l 424 (761)
+..+...|...|++++|...|++..+... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999998754310 012 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 004324 425 MKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 425 ~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.+..+. +-.| ...++..+...|...|++++|...+++..+ .-.++ ..+|..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652 2111 145788889999999999999999999875 11222 34888999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCch
Q 004324 494 FNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSS 569 (761)
Q Consensus 494 ~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (761)
+++......-.++ ..++..+...|...|++++|...+++..+.. +.. ..+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~----------------------~~~ 303 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA----QEL----------------------NDR 303 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHT----------------------TCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH----Hhc----------------------CCc
Confidence 9987653100012 5688899999999999999999999987521 110 000
Q ss_pred hhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhc------cccchhhHHHHHHHHHhhhhccCCCC
Q 004324 570 EQRENLIGLLLGGLCIESDEKRKRHMIR--FQF------NENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 570 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l------~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.....++..+...+...|+.++|...++ +.+ .+.....+..++.+|...|+...+..
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 0125567777788889999999998887 333 34445677889999999998766554
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.33 E-value=2.4e-10 Score=115.17 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=187.0
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcC
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKIG 381 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g 381 (761)
+..+...|++++|+..|++..+... .+..++..+..+|...|++++|.+.++.+.+....+ ...+|..+...|.+.|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3667788999999999999987632 234578888899999999999999999999844222 2345889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
++++|.+.|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 3366789999999999999999999999988762 3456777777734444569999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVN------TRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~------~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++.+..+.+...+..+...+...|+ +++|...|++..+...-.|+ ..+|..+...|.+.|++++|.+.|++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998666678899999999999998 88899999887764211233 25788899999999999999999999
Q ss_pred HHH
Q 004324 533 MCL 535 (761)
Q Consensus 533 m~~ 535 (761)
..+
T Consensus 247 al~ 249 (272)
T 3u4t_A 247 ILA 249 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 996
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.30 E-value=5.3e-10 Score=118.30 Aligned_cols=225 Identities=9% Similarity=0.023 Sum_probs=192.3
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGD-VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
...+...|++++|+..+++.....- -+..+|+.+..++.+.|+ +++|.+.|+++.+..+. +...|+.+..+|.+.|+
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccC
Confidence 3566778999999999999988632 257788999999999997 99999999999998765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRL----- 456 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~a----- 456 (761)
+++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. .-+...|+.+..+|.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999998863 3378899999999999999999999999999965 3368899999999999 6665777
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC---------CHHH
Q 004324 457 HLAFSECLEKCRPNRTIYGIYLESLKNAG--NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---------DFVK 525 (761)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g---------~~~~ 525 (761)
...|++.++..+-+...|+.+...|.+.| ++++|.+.+.++ +. -+.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 58888888756778899999999999988 689999999998 43 3456788999999998874 3589
Q ss_pred HHHHHHHH-HH
Q 004324 526 AEKIYDLM-CL 535 (761)
Q Consensus 526 A~~~~~~m-~~ 535 (761)
|+++|+++ .+
T Consensus 337 A~~~~~~l~~~ 347 (382)
T 2h6f_A 337 ALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998 53
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=1.5e-09 Score=111.81 Aligned_cols=217 Identities=11% Similarity=0.106 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCA-------KEGDV-------EDAEKTWLRLLES-DNGIPTPAFVYKMEAYA 378 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~ 378 (761)
++|..+|++..... .-+...|..+...+. +.|++ ++|..+|++..+. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56667777766542 225566666666654 45886 8999999999983 432 5678999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSAS-VP-AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL-NLGMHDR 455 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~-~~g~~~~ 455 (761)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 454 33 79999999999999999999999998854 234455554444432 3699999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (761)
|..+|+..++..+.+...|..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875567899999999999999999999999999998632455 4678999999999999999999999999
Q ss_pred HH
Q 004324 534 CL 535 (761)
Q Consensus 534 ~~ 535 (761)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=2.6e-09 Score=110.08 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEF-------MKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 349 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
++|..+|++..+..+. +...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998887543 67888888877764 5886 8999999999873123356689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPL-MP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK-NAGNIEKAE 491 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 491 (761)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+..+++...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999984 454 33 89999999999999999999999999755566666765544433 369999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
++|++..+.. +-+...|..++..+.+.|++++|..+|++.++.. ..+|+ .
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~---------------------------~ 239 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPE---------------------------K 239 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGG---------------------------G
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHH---------------------------H
Confidence 9999998863 4578899999999999999999999999999642 11221 1
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~ 605 (761)
...+|..++......|+.+.|..+++ +...|++.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 25678888888888999999998888 77788754
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=1.7e-09 Score=101.90 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|...+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566666777777777777777777666542 2245566666677777777777777777666643 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.+...++++.|...+.+..+..+.+..++..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 77777777777777777766556677788888888888888888888888887764 4467778888888888888888
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|++.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.24 E-value=1.2e-09 Score=119.22 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=216.7
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF---AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~ 229 (761)
...+.|++++|.++|+...+.| +...+..|-.+|...|.. ++|..+|++..+. +...+..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~--- 80 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA--- 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH---
Confidence 4457789999999999998887 333445566667777888 8999999988764 4455555555444
Q ss_pred CCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004324 230 VQG-----CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (761)
Q Consensus 230 ~~g-----~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (761)
..+ +.++|+..|++..+. |. |+ .+..+-..+....+ .. .-.++.+.+......|.. .. ...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~-~~--~~~~a~~~~~~a~~~g~~-~a--~~~Lg-- 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPH-SF--PNVNAQQQISQWQAAGYP-EA--GLAQV-- 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGG-GC--TTCCHHHHHHHHHHHTCT-TH--HHHHH--
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCC-CC--CCHHHHHHHHHHHHCCCH-HH--HHHHH--
Confidence 233 788999999998885 33 33 33333334433211 00 113456666666655542 21 11121
Q ss_pred HhhccCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004324 305 HSYQDNI----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG---DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (761)
Q Consensus 305 ~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 377 (761)
..+...+ ..+.+..+++.... .+...+..+...|.+.| +.++|.+.|+...+.|.. +...+..|...|
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 2222223 34555555544332 23337788888888899 899999999999988853 555556677777
Q ss_pred HHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 378 AKI----GEFMKSLEIFREMQERLGSASVPAYHKIIEL-L--CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 378 ~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
... ++.++|.+.|++.. .| +...+..|-.. + ...++.++|...|++..+.| +...+..|..+|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 655 78999999999887 43 45566666655 3 45889999999999999877 6778888888887 5
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--
Q 004324 451 G-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS-- 519 (761)
Q Consensus 451 g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~-- 519 (761)
| +.++|..+|.+.. .-+...+..|...|.. ..++++|..+|++..+.| +......|-..|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCC
Confidence 5 8999999998877 6678888888888877 338999999999998887 44455666666664
Q ss_pred --CCCHHHHHHHHHHHHHcCC
Q 004324 520 --SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 520 --~g~~~~A~~~~~~m~~~g~ 538 (761)
..+.++|..+|++..+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4578999999999887663
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.7e-09 Score=101.82 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+..+|..+...|.+.|++++|.+.|++..+..+. +..+|..+...|.+.|++++|...+....... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 6788999999999999999999999999988754 78889999999999999999999999988763 336777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
.+...++++.|...+.+..+.. +-+..++..+...|.+.|++++|.+.|++..+..+.+..+|..+...|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998864 446788999999999999999999999999886677899999999999999999999
Q ss_pred HHHHHHhhhCC
Q 004324 491 EEIFNHMHSDQ 501 (761)
Q Consensus 491 ~~l~~~m~~~g 501 (761)
.+.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998853
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=1.3e-07 Score=106.78 Aligned_cols=416 Identities=7% Similarity=0.010 Sum_probs=272.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK---FAKCRDIFDDIINQG-RVPSEMTFHILIVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~pd~~~~~~li~~~~~~ 228 (761)
.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++..... ..|++..|..-+.-..
T Consensus 75 ~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-- 150 (679)
T 4e6h_A 75 HHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR-- 150 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--
Confidence 344567899999999999998 68899999999999999999 999999999998863 2478889988776544
Q ss_pred CCCCC--------HHHHHHHHHHHHhcCCC-CCC-HHHHHHHHHHHHcCCCCC---chhhHHHHHHHHHHHHHcCCCcCH
Q 004324 229 PVQGC--------LDEACSIYNRMIQLGGY-QPR-PSLHNSLFRALVSKPGGL---SKYYLQQAEFIFHNLLTSGLEIQK 295 (761)
Q Consensus 229 ~~~g~--------~~~A~~l~~~m~~~~g~-~p~-~~t~~~ll~~~~~~~g~~---~~g~~~~A~~~~~~m~~~~~~p~~ 295 (761)
+.+. .+...++|+.....-|. .|+ ...|...+.-.....+.. .++.++.+..+|.+.+........
T Consensus 151 -~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~ 229 (679)
T 4e6h_A 151 -KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE 229 (679)
T ss_dssp -HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred -HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence 2222 23455788877665466 665 456766666543211100 124678899999998853222122
Q ss_pred HHHHHHHHHH-hhcc----------CCCHHHHHHHHHHHHHc--CCC---------------C-----C---HHHHHHHH
Q 004324 296 DIYSGLIWLH-SYQD----------NIDKERISLLKKEMQQA--GFE---------------E-----G---KEVLLSVL 339 (761)
Q Consensus 296 ~~~~~li~~~-~~~~----------~g~~~~a~~l~~~m~~~--g~~---------------p-----~---~~~~~~ll 339 (761)
.++....... .... ..+++.|...+.++... ++. | + ...|...+
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 3332221110 0000 01123344444443221 221 1 1 12343443
Q ss_pred HHHHhcC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 340 RVCAKEG-------DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL-EIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 340 ~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
.---..+ ..+.+..+|++.+..-+. ....|-..+.-+-+.|+.++|. ++|++.... ++.+...|-..+..
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3222221 123345678777776433 6778888888888889998996 999988764 55566677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 004324 412 LCKAEETELTESLMKEFVETG---------MKPL------------MPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRP 469 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~p 469 (761)
.-+.|++++|.++|+.+.+.. -.|+ ..+|...+....+.|.++.|+.+|....+. ...
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 888999999999999988641 0132 235777777777888899999999998763 222
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 470 NRTIYGIYLESLKNAG-NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
....|-..+..-.+.| +.+.|.++|+...+. ++-+...|...+......|+.+.|..+|++.+... +++.
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~~~----- 538 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SDSH----- 538 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SSTT-----
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CCHH-----
Confidence 3334443333333444 589999999998886 45567777788888888899999999999988532 2111
Q ss_pred HHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchh
Q 004324 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRM 606 (761)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~ 606 (761)
....+|...+.--..+|+.+.+..+.+ .+..|++..
T Consensus 539 ----------------------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 539 ----------------------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 126788889988889999999999988 777887653
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=1.1e-09 Score=116.83 Aligned_cols=299 Identities=10% Similarity=-0.001 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-CC--CCCHHHHHHHHHHHHcCCCCCchhhHHHHH-----------HHHHHHHHcCCCcC-
Q 004324 230 VQGCLDEACSIYNRMIQLG-GY--QPRPSLHNSLFRALVSKPGGLSKYYLQQAE-----------FIFHNLLTSGLEIQ- 294 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~-g~--~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~-----------~~~~~m~~~~~~p~- 294 (761)
+.+++++|..+++++.+.- .+ .++...|-.++..-.... .+.++.+. ..++.+.......+
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~----~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM----LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH----HhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 4678888888888775531 22 223333344433211100 02334444 55555543221111
Q ss_pred -HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--
Q 004324 295 -KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-- 365 (761)
Q Consensus 295 -~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-- 365 (761)
...+..+..+..+...|++++|...|++....- -.+| ..++..+..+|...|++++|.+.+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112233345567788999999999999987641 1122 457888999999999999999999987764111 1
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 004324 366 ---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVET----GM 433 (761)
Q Consensus 366 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 433 (761)
...+++.+...|...|++++|.+.|++..+..- .++ ..+|+.+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 235788899999999999999999998764310 012 246888999999999999999999998872 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 004324 434 -KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 434 -~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~ 504 (761)
.....++..+...|.+.|++++|...+++..+ +.+.....++.+...|...|+ +++|+.++++... .+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HH
Confidence 33467889999999999999999999999875 122233446778888889999 8889888888732 22
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.....+..+...|.+.|++++|.++|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345778889999999999999999999875
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=3.2e-10 Score=117.64 Aligned_cols=274 Identities=13% Similarity=0.002 Sum_probs=202.7
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPT 367 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~ 367 (761)
....+..+..+...|++++|..+|++..+.... + ..++..+...|...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344455567788899999999999999886422 3 367788899999999999999999886653 211 124
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTE 422 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~ 422 (761)
.++..+...|...|++++|...|.+..+... .++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999998754210 112 3478888889999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~ 491 (761)
..+++.... +-.+ ...++..+...|...|++++|...+++..+ .-.++ ..++..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887652 2111 245788888999999999999999999875 11122 337888999999999999999
Q ss_pred HHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 492 EIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
+.+++......-.++ ..++..+...|...|++++|..++++..+. .+.. .
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~----------------------~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----AQEL----------------------K 297 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH----------------------T
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHhc----------------------C
Confidence 999987653100012 567888899999999999999999998752 1110 0
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
.+.....++..+...+...|+.++|...++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 000114567777788888999999998877
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=1.4e-10 Score=124.80 Aligned_cols=276 Identities=13% Similarity=-0.002 Sum_probs=205.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLLES----DN-GIPTPAF 370 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~ 370 (761)
.+..+..+...|++++|...|++..+.... +. .++..+...|...|++++|.+.+++..+. +. .....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334456778899999999999999886422 32 47888889999999999999999887664 11 1234678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQER----LGS-ASVPAYHKIIELLCKAEE-----------------TELTESLMKEF 428 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~-----------------~~~A~~l~~~m 428 (761)
..+...|...|++++|...|++..+. +-. ....+|..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999987543 111 124478888899999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 429 VET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 429 ~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
.+. +-.+ ...++..+...|...|++++|...+++..+.. .++ ..++..+...|...|++++|.+.|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 652 2111 23578888999999999999999999987511 122 237888999999999999999999987
Q ss_pred hhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 498 HSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 498 ~~~g~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
..... ......++..+...|...|++++|..++++..+. .+.. . ......
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~---------------------~-~~~~~~ 343 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI----AQEL---------------------G-DRIGEA 343 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH---------------------T-CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHC---------------------C-ChHHHH
Confidence 76320 0012568888999999999999999999998752 1110 0 000124
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhccc
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNE 602 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p 602 (761)
.++..+...+...|+.++|...++ +.+.+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 566777778888999999998887 44443
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=3.7e-10 Score=121.55 Aligned_cols=261 Identities=12% Similarity=-0.024 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 346 (761)
|++++|...|+++++.+.. +.. ...+..++..+...|++++|...+++.... +-.| ...++..+...|...|
T Consensus 62 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 5999999999999887543 222 123344457778889999999999887653 1112 3456788889999999
Q ss_pred ChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc----CCCC
Q 004324 347 DVEDAEKTWLRLLESD-----NGIPTPAFVYKMEAYAKIGE-----------------FMKSLEIFREMQER----LGSA 400 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p 400 (761)
++++|.+.+++..+.. ......++..+...|...|+ +++|.+.+.+..+. +..+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999877641 11134578889999999999 99999999876432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---
Q 004324 401 -SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE---KCR--- 468 (761)
Q Consensus 401 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~--- 468 (761)
...+|..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+ ...
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 234688888999999999999999999876311 112 33788899999999999999999999875 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
....++..+...|...|++++|.+.|++...... ......++..+...|.+.|++++|.++|++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1256888999999999999999999998866310 001245788899999999999999999999986
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=7.7e-10 Score=121.41 Aligned_cols=214 Identities=13% Similarity=0.011 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV-EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
.++++..+++.... ...+...+..+..+|...|++ ++|.+.|++..+.... +...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666655433 223677888888888899999 9999999988887643 57888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004324 392 EMQERLGSASVPAYHKIIELLCKA---------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNL--------GMHD 454 (761)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~--------g~~~ 454 (761)
+..+. .|+...|..+...|... |++++|...+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88875 47778888888888888 99999999999988864 33578888888888888 8899
Q ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 455 ~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
+|...|++..+..+ .+...|..+...|...|++++|.+.|++..+.. +-+...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999887434 588899999999999999999999999988864 4466788888888889999888888765
Q ss_pred HH
Q 004324 532 LM 533 (761)
Q Consensus 532 ~m 533 (761)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.18 E-value=1.2e-09 Score=116.93 Aligned_cols=261 Identities=13% Similarity=0.003 Sum_probs=197.7
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 346 (761)
|++++|...|++..+.+.. +.. ......++..+...|++++|...+++.... +-.| ...++..+...|...|
T Consensus 23 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 5999999999999887543 222 223334457788899999999999886543 2122 2456778888999999
Q ss_pred ChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc----C
Q 004324 347 DVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE--------------------FMKSLEIFREMQER----L 397 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g 397 (761)
++++|...+++..+.... .+ ..++..+...|...|+ +++|.+.+.+.... +
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999887764211 12 4478888999999999 99999999876432 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC
Q 004324 398 GSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RP 469 (761)
Q Consensus 398 ~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p 469 (761)
..| ...+|..+...|...|++++|...+++..+.. -.++ ..++..+...|...|++++|...+++..+.. .+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 111 13468888899999999999999999987631 1122 3478889999999999999999999987511 12
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 470 N----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 470 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+ ..++..+...|...|++++|...|++......-.++ ..++..+...|.+.|++++|.+.+++..+
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 568889999999999999999999987653100112 56888899999999999999999999875
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=4.8e-10 Score=115.19 Aligned_cols=238 Identities=14% Similarity=0.106 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 004324 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQA-------GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------D 362 (761)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 362 (761)
.......++..+...|++++|..+|+++.+. .......++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444557788889999999999988763 22224566788888899999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 004324 363 N-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET--- 431 (761)
Q Consensus 363 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--- 431 (761)
- .....++..+...|...|++++|.+.|++..+. +..| ...++..+...|...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123567788889999999999999999988754 2222 3456788888899999999999999998774
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 432 ---GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--------CRP-------NRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 432 ---g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
+-.| ...++..+...|...|++++|...++++.+. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2223 2457788888999999999999999888741 111 12233334444555566666777
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 493 l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+....... +.+..+|..+...|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766543 34567899999999999999999999999874
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=2.3e-09 Score=117.67 Aligned_cols=213 Identities=10% Similarity=-0.003 Sum_probs=178.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF-MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
.++++.+.++....... .+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777777665543 4788899999999999999 99999999998763 335889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIE 488 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~ 488 (761)
++..+. .|+..++..+...|... |++++|...|++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999985 47788999999999999 9999999999999986677899999999999999 9999
Q ss_pred HHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccC
Q 004324 489 KAEEIFNHMHSDQTIG---VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 565 (761)
+|.+.|++..+.. + -+...|..+...|...|++++|.+.|++..+ .+|+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~--------------------- 291 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPAW--------------------- 291 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC---------------------
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC---------------------
Confidence 9999999999864 2 3889999999999999999999999999986 33332
Q ss_pred CCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 566 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
..+|..+...+...|+.++|.....
T Consensus 292 -------~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 292 -------PEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666777777765543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=4.2e-09 Score=98.70 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
..|..+...|...|++++|...|+++.+. .+.+...|..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455556666666666666666665543 12345566666666666667777776666666542 33456666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
...|++++|.+.++++.+..+.+...+..+...|...|++++|.++|++..... +.+..+|..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766555677788888888888888888888888887763 446778888888888888888888
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
+++++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=6.5e-09 Score=110.74 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=201.6
Q ss_pred HhhccCCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHH--HhcCChHHHH-----------HHHHHHHhCCCCCC-
Q 004324 305 HSYQDNIDKERISLLKKEMQQA--GFEEGK--EVLLSVLRVC--AKEGDVEDAE-----------KTWLRLLESDNGIP- 366 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~--g~~p~~--~~~~~ll~~~--~~~g~~~~a~-----------~~~~~m~~~g~~~~- 366 (761)
+.+.+.+++++|..+++++.+. .++.|. ..|-.++..- .-.+.++.+. ++++.+.......+
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 4455678899999999888664 233343 3334443322 1234444444 66666554321101
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-
Q 004324 367 ---TPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSAS----VPAYHKIIELLCKAEETELTESLMKEFVET--GMKP- 435 (761)
Q Consensus 367 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p- 435 (761)
...+......+...|++++|...|++..+.- -.+| ..+|..+...|...|++++|...+.+..+. ....
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 0112225567788999999999999987531 0122 357888899999999999999999998862 1111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC
Q 004324 436 ---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQ 501 (761)
Q Consensus 436 ---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g 501 (761)
...+++.+...|...|++++|...|.+..+ .-.++ ..+|+.+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 145788899999999999999999999875 11122 24788899999999999999999999877 32
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCc-cChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHh
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE-IESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLL 580 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll 580 (761)
.+....++..+...|.+.|++++|.+.+++..+..-. .++.. ...+..|.
T Consensus 260 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~l~ 310 (383)
T 3ulq_A 260 -LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----------------------------LSEFEFLK 310 (383)
T ss_dssp -GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------------------------HHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHHHH
Confidence 1334678999999999999999999999998752100 01111 22244455
Q ss_pred hhhhhhhh---hhHHHHHHH-hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 581 GGLCIESD---EKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 581 ~~~~~~g~---~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+...|+ .++|...++ ....|.....+..++.+|...|++++|..
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666 677777776 55556666678889999999999998885
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.14 E-value=3.1e-09 Score=110.08 Aligned_cols=132 Identities=14% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----HH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RT 472 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~ 472 (761)
++..+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+. -..+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555556666666666666655543210 011 235566666667777777777777666531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|...+++.... +.......++..+...|.+.|++++|..++++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6677777777788888887777776542 10001144677777788888888888888887775
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.12 E-value=4.1e-08 Score=106.86 Aligned_cols=319 Identities=14% Similarity=0.109 Sum_probs=206.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004324 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL---DEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (761)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~---~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 262 (761)
+...+.+.|++++|.++|++..+.| +..++..+-..|. ..|+. ++|+..|++..+ . .|+ .+..+-.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~---~~g~~~d~~~A~~~~~~A~~--~-~~~--A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQV---GTRDPAQIKQAEATYRAAAD--T-SPR--AQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHh--C-CHH--HHHHHHH
Confidence 5566778999999999999998876 3334555555555 46777 999999999875 2 333 3333333
Q ss_pred HHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVC 342 (761)
Q Consensus 263 ~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 342 (761)
.+.. .+....++.++|...|++..+.|...-......+. ...-..... .++.+.+......|. ......+...|
T Consensus 78 ~~~~-~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~~~~~~~~-~~a~~~~~~a~~~g~---~~a~~~Lg~~y 151 (452)
T 3e4b_A 78 LLAA-KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLY-LQYPHSFPN-VNAQQQISQWQAAGY---PEAGLAQVLLY 151 (452)
T ss_dssp HHHT-C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH-HHCGGGCTT-CCHHHHHHHHHHHTC---TTHHHHHHHHH
T ss_pred HHHh-CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCCCCCC-HHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 2333 22223358999999999999988643222221111 111111112 456666666666653 44566777778
Q ss_pred HhcCChHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 343 AKEGDVEDAE----KTWLRLLESDNGIPTPAFVYKMEAYAKIG---EFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 343 ~~~g~~~~a~----~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...+.++++. .++...... +...+..|...|.+.| +.++|++.|++..+.|. ++...+..|...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG
T ss_pred HcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC
Confidence 7777555444 444443332 3348888999999999 99999999999998874 4555556666666554
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---
Q 004324 416 ----EETELTESLMKEFVETGMKPLMPSYINLTNM-Y--LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG--- 485 (761)
Q Consensus 416 ----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g--- 485 (761)
++.++|...|+... .| +...+..|..+ | ...++.++|..+|.+..+ ..+...+..|...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCC
Confidence 69999999999988 44 55667777776 4 468899999999999886 237888888988888 56
Q ss_pred --CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 004324 486 --NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 486 --~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (761)
++++|.++|++.. .| +...+..|-..|.. ..++++|.++|++..+.|.
T Consensus 300 ~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999998 76 77888888877776 3489999999999997664
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=9.1e-09 Score=96.33 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (761)
..+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|...|+++.+.. +.+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45666777888889999999998888776543 67788888889999999999999999887762 34677888888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+..+.+..++..+...|...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988764 44678888888999999999999999999887556678899999999999999999999
Q ss_pred HHHHhhhC
Q 004324 493 IFNHMHSD 500 (761)
Q Consensus 493 l~~~m~~~ 500 (761)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=2.4e-08 Score=97.67 Aligned_cols=208 Identities=11% Similarity=0.071 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
|...|..+...|.+.|++++|...|++..+..-+++...+..+..++...|++++|...+++..+.. +-+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777778888888888888877766433566666667777777888888888887777643 224556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNR-------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILS 515 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~ 515 (761)
.|...|++++|...|++..+..+.+. .+|..+...+...|++++|.+.|++..+.. |+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHHH
Confidence 77777777777777777776444455 456666777777777777777777777653 44 455555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 595 (761)
.|.. .+..+++++...+. .+ ...|..+. ....+.+++|...
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~-~~-------------------------------~~~~~~~~--~~~~~~~~~A~~~ 202 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLAS-SN-------------------------------KEKYASEK--AKADAAFKKAVDY 202 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTT-TC-------------------------------HHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhccc-CC-------------------------------HHHHHHHH--HHHHHHHHHHHHH
Confidence 5543 23334444443210 01 11122222 2345778899988
Q ss_pred HH--hhccccchhhHHHHHHHHH
Q 004324 596 IR--FQFNENSRMHSVLRRYLYD 616 (761)
Q Consensus 596 ~~--~~l~p~~~~~~~~l~~~~~ 616 (761)
++ +++.|++......+..+..
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHhhcCCCCHHHHHHHHHHHH
Confidence 88 8899999877777666543
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=4.2e-09 Score=108.08 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=157.9
Q ss_pred chhhHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 004324 272 SKYYLQQAEFIFHNLLTSG-----LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVL 339 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll 339 (761)
..|++++|..+|+++.+.. ..+.........++..+...|++++|...+++.... +-.| ...++..+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4578999999999998741 111223333444457888999999999999988764 2222 356788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAY 405 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 405 (761)
..|...|++++|.+.++++.+. +.. ....++..+...|...|++++|.++|++..+. +..| ...++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999998875 211 23456888999999999999999999998764 2223 24568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVET-------GMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (761)
..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+.......+.+.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 88999999999999999999999863 122221 2222333334444555566666666654444567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+|..+...|.+.|++++|.++|++..+
T Consensus 279 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 279 TTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999998775
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1.4e-06 Score=98.40 Aligned_cols=416 Identities=9% Similarity=0.022 Sum_probs=271.8
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCC---hhHHHHHHHHHHHcCCCCCCHHHH
Q 004324 110 QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRE---NETGFRVYEWMMQQHWYRFDFALA 183 (761)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~ 183 (761)
.|. ..+.+....+....+..+++.... .-|....+-.. .-.+.+. ++.+..+|+..+.....+|++..|
T Consensus 68 ~W~-~yi~~~~~~~~~~~aR~vyEraL~----~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 68 LYV-KLLKHHVSLKQWKQVYETFDKLHD----RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred HHH-HHHHHHHhcCcHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 443 345555555566666666665443 34666655543 3445677 999999999999874224899999
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHh
Q 004324 184 TKLADYMGKERKF--------AKCRDIFDDIIN-QGR-VP-SEMTFHILIVAYLSAP------VQGCLDEACSIYNRMIQ 246 (761)
Q Consensus 184 ~~li~~~~~~g~~--------~~A~~~f~~m~~-~g~-~p-d~~~~~~li~~~~~~~------~~g~~~~A~~l~~~m~~ 246 (761)
..-+....+.+.+ +...++|+.... .|. .| +...|...|.-..... ..++++.+..+|.....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9998887776654 334578887554 466 55 4578888887543100 12357788999999875
Q ss_pred cCCCCCCHHHHH---HHHHHHHcCCCC----CchhhHHHHHHHHHHHHH--cCCC---------------c-----C-HH
Q 004324 247 LGGYQPRPSLHN---SLFRALVSKPGG----LSKYYLQQAEFIFHNLLT--SGLE---------------I-----Q-KD 296 (761)
Q Consensus 247 ~~g~~p~~~t~~---~ll~~~~~~~g~----~~~g~~~~A~~~~~~m~~--~~~~---------------p-----~-~~ 296 (761)
. ....-..+|. .....+....+. .....++.|...+.++.. .++. | + ..
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3 1111122332 222221000000 000134455566655422 1111 1 0 11
Q ss_pred HHHHHHHHHhhccCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHH
Q 004324 297 IYSGLIWLHSYQDNI-------DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE-KTWLRLLESDNGIPTP 368 (761)
Q Consensus 297 ~~~~li~~~~~~~~g-------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~ 368 (761)
...|.-.+..--..+ ..+++..+|++.... +.-+...|-....-+.+.|+.++|. ++|+......+ .+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHH
Confidence 122221111111111 134566778887765 3336778888888888899999996 99999987543 4677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL---------GSAS------------VPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
.|-..+...-+.|++++|.++|+.+.+.. ..|+ ...|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888999999999999999999987641 0132 23688888888889999999999999
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 428 FVET-GMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 428 m~~~-g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
..+. +. +....|...+..-.+. ++.+.|.++|+..++.++.+...|...++.....|+.+.|..+|+...... ++
T Consensus 460 A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~ 536 (679)
T 4e6h_A 460 CRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SD 536 (679)
T ss_dssp HHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SS
T ss_pred HHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CC
Confidence 9886 31 1223343333333344 458999999999998777788889999999999999999999999998874 21
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 506 ---NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
....|...+.--.+.|+.+.+.++.++|.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999974
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=2.4e-08 Score=106.08 Aligned_cols=233 Identities=11% Similarity=0.043 Sum_probs=177.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CC-CHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-----GI-PTP 368 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~~-~~~ 368 (761)
.+..+..+...|++++|...|++....-. .++ ..++..+..+|...|+++.|...+.+..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34445567788999999999999876421 133 45678888999999999999999988775311 11 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPLMPS 439 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t 439 (761)
+++.+...|...|++++|.+.|.+..+. +-.+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 7888999999999999999999987642 1111 1346788889999999999999999998871 22233678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
+..+...|.+.|++++|...+++..+ +.+.....++.+...|...|+ +.+|+.++++... .+.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---hhHHHHHHH
Confidence 88999999999999999999999886 122334566777777888888 8888888887432 222345677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+...|.+.|++++|.+.|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999999874
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=4.2e-09 Score=106.24 Aligned_cols=225 Identities=13% Similarity=0.117 Sum_probs=156.1
Q ss_pred cCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 004324 309 DNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKM 374 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~li 374 (761)
..|++++|+.+|++..+ ........++..+...|...|++++|.+.++++.+. +-. ....+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44556666666655443 222224567888999999999999999999998865 211 2356788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 004324 375 EAYAKIGEFMKSLEIFREMQER------L-GSASVPAYHKIIELLCKAEETELTESLMKEFVET------GMKP-LMPSY 440 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~------g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~ 440 (761)
..|...|++++|.+.|.+.... . .+....+|..+...|...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1223567888999999999999999999999875 1123 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhhhCCCCCC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEK---------CRPNRTIYGIYLESLKNAGN------IEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~---------~~p~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~~p 505 (761)
..+...|...|++++|...+++..+. .......|..+...+...+. +.++...++..... .+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CHH
Confidence 88999999999999999999998741 11223344444444443332 33444444433322 122
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...++..+...|.+.|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456888999999999999999999999874
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=2.6e-08 Score=113.91 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
..+|+.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++.++.. .-+..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555554431 1134455555555555555555555555555532 1134555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
|.+.|++++|.+.|++.++..+-+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666555334456666666666666666666666666666643 22455666666666666666666
Q ss_pred HHHHHHHHH
Q 004324 527 EKIYDLMCL 535 (761)
Q Consensus 527 ~~~~~~m~~ 535 (761)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.93 E-value=4.1e-08 Score=112.26 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
..+|+.+-.+|.+.|++++|.+.|++..+..+. +..+|+.+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 567888999999999999999999999887654 67889999999999999999999999988753 2257789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|.+.|++..+.. .-+..+|+.+..+|.+.|++++|.+.|++.++..+-+...|..|...|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999998853 2357889999999999999999999999998755667889999999999999999999
Q ss_pred HHHHHhhh
Q 004324 492 EIFNHMHS 499 (761)
Q Consensus 492 ~l~~~m~~ 499 (761)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=1.3e-07 Score=92.41 Aligned_cols=195 Identities=9% Similarity=-0.006 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
.|...+......+...|++++|.+.|+...+....++...+..+..+|.+.|++++|.+.|++..+.. +-+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888999999999999999999999998765677888889999999999999999999998753 22566788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLES 480 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~ 480 (761)
..|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++..+..+. +...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999999854 2234 56888888999999999999999999875444 46788888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 163 ~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 86554 45566666653 34555565554 3345678999999999986
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=4.8e-07 Score=95.66 Aligned_cols=267 Identities=10% Similarity=-0.019 Sum_probs=183.9
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKE----VLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP----TPAFVYKME 375 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~ 375 (761)
..+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+++..+.... .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44567889999999999887754222332 4566777888999999999999887753211 12 233566788
Q ss_pred HHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQER----LGS--AS-VPAYHKIIELLCKAEETELTESLMKEFVETGMK--P--LMPSYINLT 444 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~li 444 (761)
.|...|++++|...+++.... +.. |. ..++..+...+...|++++|...+++.....-. + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 899999999999999987643 222 22 345667788899999999999999998874321 1 245788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHH
Q 004324 445 NMYLNLGMHDRLHLAFSECLE--KCRPNRTIYG-----IYLESLKNAGNIEKAEEIFNHMHSDQTIG--VNTRSCNIILS 515 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~~--p~~~t~~~li~ 515 (761)
..+...|++++|...+++..+ ....+...+. .++..+...|++++|..++++......-. .....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 899999999999999998875 1111112222 23345779999999999999987653100 11346778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 595 (761)
.+...|++++|...+++.....-.... ... ...++..+..++...|+.++|...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~-------------------------~~~-~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRL-------------------------MSD-LNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------HHH-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcc-------------------------hhh-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999988742100000 000 012444455566778888888877
Q ss_pred HH
Q 004324 596 IR 597 (761)
Q Consensus 596 ~~ 597 (761)
++
T Consensus 316 l~ 317 (373)
T 1hz4_A 316 LL 317 (373)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.92 E-value=4.1e-07 Score=96.18 Aligned_cols=272 Identities=8% Similarity=0.014 Sum_probs=141.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004324 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEM----TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261 (761)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~----~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 261 (761)
+...+...|++++|...+++........+.. +++.+-..+. ..|++++|...+++......-.++...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH---CKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 3344556777778877777766643222222 3444445555 467788887777776542100011110
Q ss_pred HHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCC--CC-HHH
Q 004324 262 RALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFE--EG-KEV 334 (761)
Q Consensus 262 ~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~--p~-~~~ 334 (761)
...........+...|++++|...+++.... +.. |. ..+
T Consensus 92 ----------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 92 ----------------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 0011111123334455555555555544332 211 22 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH---
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYH--- 406 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~--- 406 (761)
+..+...+...|++++|...+++..+..... ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 5556667777888888888877766543211 2345666777777778888888877776543111110 1111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCH-HHHH
Q 004324 407 --KIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNR-TIYG 475 (761)
Q Consensus 407 --~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~-~~~~ 475 (761)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...++.... +..++. .++.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 12233556777777777776655422111 122344555566666666666666665542 111111 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+...|...|+.++|...+++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555666666666666655543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=1.7e-07 Score=99.45 Aligned_cols=316 Identities=8% Similarity=-0.032 Sum_probs=205.5
Q ss_pred CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHhcC--CCCC------CHHHHHHHH
Q 004324 176 YRFDFALATKLADYM--GKERKFAKCRDIFDDIINQ--GRV--PSEMTFHILIVAYLSA--PVQG------CLDEACSIY 241 (761)
Q Consensus 176 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~--g~~--pd~~~~~~li~~~~~~--~~~g------~~~~A~~l~ 241 (761)
..|+..+-+.|-+.| .+.+++++|..+++++.+. .+. +++..|-.++..-... .... ......+.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345677777787887 7889999999999887653 121 2333333333321000 0011 112222555
Q ss_pred HHHHhcCCCCC-C-HHH--HHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC-cC--HHHHHHHHHHHhhccCCCHH
Q 004324 242 NRMIQLGGYQP-R-PSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-IQ--KDIYSGLIWLHSYQDNIDKE 314 (761)
Q Consensus 242 ~~m~~~~g~~p-~-~~t--~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~li~~~~~~~~g~~~ 314 (761)
+.+... ..| + ... |......+.... |++++|...|++..+.... ++ ........++..+...|+++
T Consensus 86 ~~i~~~--~~~~~~~l~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 86 ETIETP--QKKLTGLLKYYSLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHGG--GHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcc--CCCCccHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 555432 111 1 111 112222222222 5999999999998764211 22 12222333447788899999
Q ss_pred HHHHHHHHHHHcC--C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCh
Q 004324 315 RISLLKKEMQQAG--F---EE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 315 ~a~~l~~~m~~~g--~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~ 383 (761)
.|...+++....- . .+ ...+++.+..+|...|++++|.+.+.+..+. +.. ....+++.+...|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 9999998876531 1 11 2456788899999999999999999887763 211 1235678899999999999
Q ss_pred HHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHhcCC---
Q 004324 384 MKSLEIFREMQER----LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM---KP-LMPSYINLTNMYLNLGM--- 452 (761)
Q Consensus 384 ~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p-d~~t~~~li~~~~~~g~--- 452 (761)
++|.+.|++..+. +.+....++..+...|.+.|++++|...+++..+..- .| ....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999988761 2233367788899999999999999999999987421 12 24456667777778888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+.+|...++... ..+.....+..+...|...|++++|.+.|++..+
T Consensus 319 ~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777632 1122334677889999999999999999998765
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=9.3e-08 Score=83.85 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|..+++++.+.. +.+..++..+...|...|++++|..+++++.+..+.+...|..+...|...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444445555555555555544432 223444455555555555555555555555543344555666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|++++|.++|+++.... +.+..++..+...|.+.|++++|.+.|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666543 33456666666666666777777666666654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=1.3e-07 Score=82.97 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+++++.+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566667777777777777777766542 2355666667777777777777777777776653 334566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..|++++|.+.++.+.+..+.+..++..+...|.+.|++++|.+.|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777644556777778888888888888888888887664
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=2.1e-08 Score=101.09 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCC
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVLRVCAKEGD 347 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~ 347 (761)
.+++|++++..+...+.. ........++..+...|++++|...+++.... +-.| ...++..+..+|...|+
T Consensus 23 ~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHP--DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 344444444444332222 23333444558888999999999999998765 2223 35578899999999999
Q ss_pred hHHHHHHHHHHHhCC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHH
Q 004324 348 VEDAEKTWLRLLESD-----N--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLC 413 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~ 413 (761)
+++|.+.+.+..+.. . .....+|..+...|...|++++|...|++..+. +-.| ...++..+...|.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988751 1 123567888999999999999999999998764 1122 3567888999999
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 414 KAEETELTESLMKEFVET-------GMKPL-MPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~-------g~~pd-~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
..|++++|..++++..+. ...+. ...+..+...+...+. +..+...+.......+....++..+..
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999998863 12222 2233333333333222 222222222222122234567889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 004324 480 SLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.|...|++++|..+|++..+.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987753
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=2.7e-07 Score=93.98 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=128.4
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIE 410 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~ 410 (761)
.|...|++++|.+.|.+..+. |-.+ ...+|+.+...|.+.|++++|+..|++..+. |-.. -..+|+.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655443 2111 1346677777777777777777777765432 1100 0346777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCH-----HHHHHH
Q 004324 411 LLCKA-EETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNR-----TIYGIY 477 (761)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~-----~~~~~l 477 (761)
.|... |++++|...|++..+..- ..+ ..+++.+...|.+.|++++|...|++..+..+ +.. .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 888888888888776311 011 34678888889999999999999998886221 111 267788
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH------HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCccChH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTR------SCNIILSAYL--SSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~------t~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
..+|...|++++|...|++..+.. |+.. .+..++.+|. ..+++++|++.|+++.. ++|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~----l~~~ 272 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSED---PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR----LDKW 272 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC----CCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc----cHHH
Confidence 888999999999999999987742 4322 3445666665 45678888888877653 5554
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=9.8e-07 Score=88.07 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL-MPSY 440 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~ 440 (761)
+...+-.+...+.+.|++++|...|+++.+.. +-+ ...+..+..+|.+.|++++|...|+...+..- .|. ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555666666677777777776666542 112 44555666666666666666666666666321 111 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 441 INLTNMYLN--------LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 441 ~~li~~~~~--------~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
..+..+|.. .|++++|...|+++.+..+.+...+.++. .+...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 555555555 55566666666555542222222221111 11111110 0112356
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhh-------
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI------- 585 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------- 585 (761)
+...|.+.|++++|+..|+++++.. |+... ....+..+..++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---------------------------~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPW---------------------------ADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTT---------------------------HHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCch---------------------------HHHHHHHHHHHHHHhcccchh
Confidence 6788999999999999999998632 22110 02233334444443
Q ss_pred ---hhhhhHHHHHHH--hhccccch---hhHHHHHHHHHhhhhccCCCC
Q 004324 586 ---ESDEKRKRHMIR--FQFNENSR---MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 586 ---~g~~~~a~~~~~--~~l~p~~~---~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.|++++|...++ +...|++. .....+..++...++++++..
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 488999999998 78888874 456678888888888877665
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=4e-07 Score=92.76 Aligned_cols=218 Identities=8% Similarity=-0.006 Sum_probs=154.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSAS-VPAYHKIIELLCKAEETELT 421 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A 421 (761)
++++|...|... ...|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887765 45688899999999999987543 22222 46799999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCCHHH
Q 004324 422 ESLMKEFVETGMK-PL----MPSYINLTNMYLNL-GMHDRLHLAFSECLEKCR--PN----RTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 422 ~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~~--p~----~~~~~~li~~~~~~g~~~~ 489 (761)
...+++..+.... .+ ..+++.+...|... |++++|...|++..+-.+ .+ ..+|+.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988763111 12 45788999999996 999999999999875111 11 4578899999999999999
Q ss_pred HHHHHHHhhhCCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccccc
Q 004324 490 AEEIFNHMHSDQTIGVNT-----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 564 (761)
|...|++......-.+.. .+|..+..++...|++++|...|++..+ .+|......
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~---------------- 236 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS----EDPNFADSR---------------- 236 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC----C------------------------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCCCcH----------------
Confidence 999999998854111111 2677888889999999999999999874 344320000
Q ss_pred CCCchhhHHhHHHHHhhhhh--hhhhhhHHHHHHH--hhccccchh
Q 004324 565 LNLSSEQRENLIGLLLGGLC--IESDEKRKRHMIR--FQFNENSRM 606 (761)
Q Consensus 565 ~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~--~~l~p~~~~ 606 (761)
....+..|+.++. ..++++.|...++ ..++|....
T Consensus 237 -------~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 -------ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 0123334444443 3456777777775 667776543
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=2.6e-06 Score=82.02 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004324 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----ETELTESLM 425 (761)
Q Consensus 350 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~ 425 (761)
+|.+.|++..+.| +...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666665 56666667777777777777777777776654 45566666666665 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKN----AGNIEKAEEIFN 495 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~----~g~~~~A~~l~~ 495 (761)
++..+.| +..++..|...|.. .+++++|..+|.+..+.-. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776655 45666677777766 6777888887777765211 126777777777777 678888888888
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcCC
Q 004324 496 HMHSDQTIGVNTRSCNIILSAYLSS-G-----DFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 496 ~m~~~g~~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 538 (761)
+..+.+ .+...+..|-..|... | +.++|..+|++..+.|.
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887762 2455666677777653 2 78888888888887664
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.66 E-value=1.3e-06 Score=87.11 Aligned_cols=184 Identities=10% Similarity=0.046 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS-VPAY 405 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 405 (761)
.+...+-.+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|++..+..- .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3567777888889999999999999999998764311 57788899999999999999999999987621 122 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 004324 406 HKIIELLCK--------AEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (761)
Q Consensus 406 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (761)
..+..++.. .|++++|...|++..+.. |+ ......+. .+..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~---~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRA---KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHH---HHHHHHHH
Confidence 778888888 999999999999999853 33 12221111 1111110 01123567
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhC----------CCHHHHHHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSS----------GDFVKAEKIYDLMCL 535 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~----~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~ 535 (761)
+...|.+.|++++|...|++..+.. |+ ...+..+..+|... |++++|...|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 7888999999999999999998764 43 45677777788766 889999999999986
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=2.2e-06 Score=82.23 Aligned_cols=130 Identities=11% Similarity=-0.028 Sum_probs=87.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN- 486 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~- 486 (761)
+...|.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|++.++..+.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6677778888888888888877753 33567778888888888888888888888877556677788888877766553
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChH
Q 004324 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 487 -~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
.+.+...++.... ..|....+..+..++...|++++|+..|++.++ ..|++.
T Consensus 139 ~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 139 EKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3445555555432 223333444455566677888888888888874 345544
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.63 E-value=5.4e-08 Score=88.15 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
..++...|++++|...+.......+-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 3445566778888888887764333345566778889999999999999999988864 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH-HH--hhc
Q 004324 524 VKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM-IR--FQF 600 (761)
Q Consensus 524 ~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~--~~l 600 (761)
++|+..|++..+ .+|+ +..+|..+...+...|+.++|.+. ++ +.+
T Consensus 82 ~~A~~~~~~al~----~~p~----------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVE----LNPT----------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHH----HCTT----------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999885 3443 255677777778888888765544 45 888
Q ss_pred cccchhhHHHHHHHHHhhhh
Q 004324 601 NENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 601 ~p~~~~~~~~l~~~~~~~g~ 620 (761)
+|+++..|.+...++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 99999889888888887764
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.62 E-value=1.3e-06 Score=87.73 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-----LMPSYINLT 444 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~li 444 (761)
..+..+|...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 3444444445555555555544433321 113334444445555555555555555555442 23 133333333
Q ss_pred HHHH--hcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CC----CCCHHHHHH
Q 004324 445 NMYL--NLG--MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ----TI----GVNTRSCNI 512 (761)
Q Consensus 445 ~~~~--~~g--~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~----~p~~~t~~~ 512 (761)
.++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.. .. +-|..+...
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 3311 112 455555555554432 2332222233335555566666666655443310 00 123444434
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|......|+ +|.++++++.+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHH
Confidence 4444444454 55566666653
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=2.6e-06 Score=87.34 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004324 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 352 (761)
.|++++|..++++..+.... . .+...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~-----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S-----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C-----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c-----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 47899999999887653221 0 111157888888887764 45677899999999
Q ss_pred HHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004324 353 KTWLRLLESDNGI-P----TPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 353 ~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~ 422 (761)
..|.+..+..... + ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+|+.+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9988876542110 1 347888889999999999999999876542 1111 13467778888888 9999999
Q ss_pred HHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC--CC-HHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFVETGMK---P--LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCR--PN-RTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~~~g~~---p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~--p~-~~~~~~li~~~~~~g~~~~A~ 491 (761)
..|++..+..-. + ...+++.+...|.+.|++++|...|++..+ ... +. ..++..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999888763111 1 145788888999999999999999998875 111 11 236667777888889999999
Q ss_pred HHHHHhhhCCCCCCC---HHHHHHHHHHHHhCCCHHHHHH
Q 004324 492 EIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEK 528 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~---~~t~~~li~~~~~~g~~~~A~~ 528 (761)
..|++.. ...-.++ ......++.+| ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999987 4200011 12344555555 5677665555
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=4.3e-06 Score=83.89 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=151.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 316 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
|+..|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777888777655 56677777888999999999999999999877764 2267788889999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 395 ERLGSA-----SVPAYHKIIELLCK--AE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 395 ~~g~~p-----~~~t~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
+. .| +..+..-|..++.. .| +..+|..+|+++.+. .|+..+...|+.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 45 25566666666333 34 899999999998764 46645555666689999999999999997764
Q ss_pred C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 K----------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
. -+.|..+.-.+|......|+ +|.++++++.+.. |+.... . ++.+....|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~---P~hp~i----~------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD---HEHAFI----K------HHQEIDAKFDELVR 304 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT---CCCHHH----H------HHHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC---CCChHH----H------HHHHHHHHHHHHHH
Confidence 2 14577777677777777787 8999999999964 553221 1 23555666777664
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=5.5e-06 Score=79.71 Aligned_cols=176 Identities=11% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 004324 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----EFMKSLEIF 390 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 390 (761)
+|+..|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566777777665 67888888888888999999999999998887 57788888888887 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004324 391 REMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMK-PLMPSYINLTNMYLN----LGMHDRLHLAFS 461 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~----~g~~~~a~~~~~ 461 (761)
++..+.| +..++..|-..|.. .+++++|...|++..+.|.. .+..++..|..+|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67778888888876 78999999999998887621 126788888889988 789999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNA-G-----NIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 501 (761)
+..+. ..+...+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98763 35666788888888764 3 8999999999999887
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.60 E-value=9.7e-07 Score=101.24 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=125.7
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 378 AKIGEFMKSLEIFREMQ--------ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
...|++++|++.|++.. +. .+.+...|..+...|.+.|++++|...|++..+.. .-+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788899999888887 32 23356778888888889999999999999888753 3367788888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.|++++|.+.|++..+..+.+...|..+...|.+.|++++ .+.|++..+.+ +-+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999887556678888999999999999999 99999988864 44678888999999999999999999
Q ss_pred HHHHHH
Q 004324 530 YDLMCL 535 (761)
Q Consensus 530 ~~~m~~ 535 (761)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 988764
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=5.7e-07 Score=103.16 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=145.9
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 343 AKEGDVEDAEKTWLRLL--------ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
...|++++|.+.+++.. +... .+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 4433 356788899999999999999999999998753 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
.|++++|...|++..+.. .-+...+..+..+|.+.|++++ .+.|++..+..+.+...|..+..+|.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999864 2357788999999999999999 99999998766778899999999999999999999999
Q ss_pred HHhhhCCCCCCC-HHHHHHHHHHHHhCCC
Q 004324 495 NHMHSDQTIGVN-TRSCNIILSAYLSSGD 522 (761)
Q Consensus 495 ~~m~~~g~~~p~-~~t~~~li~~~~~~g~ 522 (761)
++..+.+ |+ ...|..+..++...|+
T Consensus 558 ~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HhhcccC---cccHHHHHHHHHHHHccCC
Confidence 9998864 55 5678888888777665
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=7.2e-06 Score=79.68 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (761)
+...+..+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|++..+..-. +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667778888899999998888887654321 356777888888889999999888888765211 111 1343
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH-------------
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI------------- 473 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~------------- 473 (761)
.+..++.+.+.. .+ ..|..+...+...|+.++|...|+.+++..+-+..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 444444432100 00 001111111222334444444444444322222211
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-H---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 474 ----YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-T---RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 474 ----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.-.+...|.+.|++++|...|+++.+.. |+ . ..+..+..+|.+.|++++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1345677889999999999999999863 44 2 56888999999999999999999998864
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.56 E-value=4.2e-06 Score=80.28 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=94.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
+...|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.. +-+..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7888888899999999998887763 3367788888888888999999999999888854 3357778888887766553
Q ss_pred --HHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 453 --HDRLHLAFSECLEKCRPNRT--IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 453 --~~~a~~~~~~m~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
...+...+.... .|+.. .+..+..++...|++++|...|++..+. .|+......+
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR---FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCHHHHHHH
Confidence 334455554443 34433 3444566667788999999999999875 4776544443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=0.00013 Score=79.61 Aligned_cols=106 Identities=7% Similarity=-0.039 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC-CHHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG-CLDEAC 238 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g-~~~~A~ 238 (761)
+..|+.+|+.+... +|. |+++.|..+|++.... .|++..|..-+.-.. +.+ ..+...
T Consensus 11 i~~aR~vyer~l~~--~P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~---~~~~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVR---KVSQKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHH---HHC----CTH
T ss_pred hHHHHHHHHHHHHH--CCC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH---HhCchHHHHH
Confidence 66666666666654 221 6788888888877663 467777877777665 333 234566
Q ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHc
Q 004324 239 SIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS 289 (761)
Q Consensus 239 ~l~~~m~~~~g~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~ 289 (761)
.+|+.....-|..| +...|...+.-+... ...+|+++.+..+|++.+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~--~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKI--EDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSC--SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhC
Confidence 67777665434333 445555555433211 11235777788888887763
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=6.7e-05 Score=75.93 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CC
Q 004324 313 KERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEG--DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY----AKI---GE 382 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~ 382 (761)
.++|+.++..+... .| +..+|+.--.++...| +++++.+.++.+....++ +..+|+.--..+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 35777777777765 33 3455676666777777 899999999998887765 556676544444 445 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--LTESLMKEFVETGMKPLMPSYINLTNMYLNLGM------HD 454 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~------~~ 454 (761)
+++++++++.+.+.. +-|..+|+.-.-.+.+.|.++ ++++.++.+.+.. .-|...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 889999999988763 447888888877788888877 8999999998865 3467777776666666665 88
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSDQ-TIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g-~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++.+.++.++...+-|...|+-+-..+.+.|+..+ +..++++....+ .-+.+...+..+...|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89999998887778899999999999999888444 556777665532 0134778899999999999999999999999
Q ss_pred HHH
Q 004324 533 MCL 535 (761)
Q Consensus 533 m~~ 535 (761)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=1.1e-05 Score=78.33 Aligned_cols=178 Identities=8% Similarity=0.011 Sum_probs=122.0
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFE-EG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~ 379 (761)
+..+...|++++|...|+++...... |. ...+..+..+|.+.|++++|...|+.+.+..+.... .++..+..+|.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 46678889999999999999876322 21 357788899999999999999999999987654222 244445555554
Q ss_pred ------------------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 380 ------------------IGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440 (761)
Q Consensus 380 ------------------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 440 (761)
.|+.++|...|+++.+. .|+. ..+.+... . ..+...+. ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--------~~~ 150 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--------KYE 150 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH--------HHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH--------HHH
Confidence 35666777777766654 2222 22211110 0 00000000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
..+...|.+.|++++|...|+.+++..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 3456778899999999999999987444343 578889999999999999999999988865
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.48 E-value=2.9e-06 Score=95.33 Aligned_cols=153 Identities=7% Similarity=-0.016 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
|++++|.+.+++..+.... +...|..+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5556666666665554332 45556666666666666666666666665542 224555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 501 (761)
++..+.. ..+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...|... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 6666643 224556666666667777777777777666654445566677777777777 77777777777766654
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.48 E-value=3.3e-06 Score=94.88 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=121.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|.+.|++..+.. +-+...|..+...|.+.|++++|.+.+++..+.. ..+..++..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887652 3357889999999999999999999999999854 34578999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDFVKAEKIYDLMCLK 536 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (761)
+++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988666788999999999999999999999999998864 44678999999999999 9999999999999875
Q ss_pred C
Q 004324 537 K 537 (761)
Q Consensus 537 g 537 (761)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=3.4e-06 Score=85.53 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IEL 411 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~ 411 (761)
..+..+...+.+.|++++|.+.|++..+..+. +...+..+...|.+.|++++|..+|++.... .|+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 34445555555666666666666666555433 4455555666666666666666666655433 2333222111 112
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCCHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~~~~~li~~~~~~g~~~~ 489 (761)
+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+.-+.+ ...+..|+..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444444444444432 1233344444444444444444444444443311111 3334444444444444444
Q ss_pred HHHHHH
Q 004324 490 AEEIFN 495 (761)
Q Consensus 490 A~~l~~ 495 (761)
|...|+
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=5.2e-05 Score=76.77 Aligned_cols=234 Identities=7% Similarity=-0.014 Sum_probs=177.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG--EFMKSLEIFREMQERLGSASVPAYHKIIELL----CKA---E 416 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g 416 (761)
..-++|.++++.++..++. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 4446899999999988765 5677888777888888 9999999999998763 23556676554444 455 7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC------HH
Q 004324 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD--RLHLAFSECLEKCRPNRTIYGIYLESLKNAGN------IE 488 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~------~~ 488 (761)
++++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++.+.++++.+.-+.|...|+.....+.+.|+ ++
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8899999999999864 447788888777788888887 89999999988667889999888887777776 89
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK-AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
++++.++++.... +-|...|+-+-..+.+.|+..+ +..+..++.+.+ ..++.
T Consensus 204 eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------ 256 (306)
T 3dra_A 204 EELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-KDQVT------------------------ 256 (306)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-GTEES------------------------
T ss_pred HHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-CCCCC------------------------
Confidence 9999999988875 5688899888888888887443 444555554321 00111
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--h-hccccchhhHHHHHH
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--F-QFNENSRMHSVLRRY 613 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~-~l~p~~~~~~~~l~~ 613 (761)
++..+..+...+...|+.++|.++++ . +++|....++...+.
T Consensus 257 ----s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 257 ----SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 25667777788888999999999999 4 379998877766554
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=1.9e-06 Score=80.20 Aligned_cols=160 Identities=10% Similarity=0.040 Sum_probs=90.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNL 450 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~ 450 (761)
.+...+.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|...++...... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555555555555555543321 1234445555555555555555555555544422 222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
+....|...+++..+..+.+...+..+...|...|++++|...|+++.+...-..+...+..+...|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 12223566666666544556778888888888888888888888887775410112457777788888888888888888
Q ss_pred HHHH
Q 004324 531 DLMC 534 (761)
Q Consensus 531 ~~m~ 534 (761)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=1.1e-05 Score=82.70 Aligned_cols=197 Identities=9% Similarity=0.021 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK-EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
.|++++|.+++++..+.-- .. +.+ .+++++|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4567888888887665311 11 112 47777777777654 567888999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004324 389 IFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG--M-KPL--MPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 389 ~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~pd--~~t~~~li~~~~~~g~~~~a~~ 458 (761)
.|.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+.- . .+. ..+++.+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99987543 1111 13478888999999999999999999877631 1 121 4578888889988 99999999
Q ss_pred HHHHHHhCCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 004324 459 AFSECLEKCR--P----NRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 459 ~~~~m~~~~~--p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|++..+..+ . ...+++.+...|.+.|++++|+..|++.... + ..+. ..++..+...+...|++++|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999875111 1 1468889999999999999999999998763 2 1111 236777778888899999999
Q ss_pred HHHHHHH
Q 004324 528 KIYDLMC 534 (761)
Q Consensus 528 ~~~~~m~ 534 (761)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.45 E-value=3.5e-06 Score=85.45 Aligned_cols=164 Identities=8% Similarity=-0.013 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL-T 444 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-i 444 (761)
+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|..++++.... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45667778889999999999999999998762 336778899999999999999999999988765 4554433332 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhCC
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLSSG 521 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~~~~~~g 521 (761)
..+...+..+.|...+++..+..+.+...+..+...|...|++++|...|+++.+.. |+ ...+..++..|...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD---LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cccccchHHHHHHHHHHHcC
Confidence 336677888889999999887667889999999999999999999999999999864 43 678999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 004324 522 DFVKAEKIYDLMCL 535 (761)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (761)
+.++|...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999987653
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=1.1e-05 Score=77.42 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 453 (761)
...|...|++++|.+.|++. +.|+...|..+...|.+.|++++|...+++..+.. +.+..++..+..+|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33444444444444444433 12344444444444444444444444444444322 12233344444444444444
Q ss_pred HHHHHHHHHHH
Q 004324 454 DRLHLAFSECL 464 (761)
Q Consensus 454 ~~a~~~~~~m~ 464 (761)
++|...|+...
T Consensus 88 ~~A~~~~~~al 98 (213)
T 1hh8_A 88 DLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=9.9e-06 Score=77.63 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
..+..+...+...|++++|...|++. +.|+..++..+...|.+.|++++|...|++..+..+.+...|..+...|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556777888999999999999876 46788999999999999999999999999998856778899999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNT----------------RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~----------------~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..|++++|.+.|++..+.. +.+. ..|..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998853 2222 78889999999999999999999999853
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.37 E-value=4.1e-06 Score=77.83 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL-LC 413 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~ 413 (761)
+......+.+.|++++|...++...+..+. +...+..+...|.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 334556677788888888888877765533 56777888888888888888888888775542 343333222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
..+...+|...+++..+.. +-+...+..+...|...|++++|...|.++.+..+ .+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334677777777643 22577888888888888888888888888876322 23568888888888889888888
Q ss_pred HHHHHhhh
Q 004324 492 EIFNHMHS 499 (761)
Q Consensus 492 ~l~~~m~~ 499 (761)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=2.3e-06 Score=77.23 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=21.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...|++..+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3333444444444444444433321 11233333333344444444444444433333
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=1.7e-05 Score=72.32 Aligned_cols=129 Identities=12% Similarity=-0.042 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
..|..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+.+..+..+.+..+|..+...|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445566666777777777777777777643 3356677777777888888888888888877655667788888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNI--ILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..|++++|.+.|++..... +.+...+.. +...+.+.|++++|.+.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8999999999998888763 334555533 3344777888888888888765
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=4.9e-05 Score=77.08 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=120.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLG-SASV----PAYHKIIELLCKAEETELTESLMKEFVETGMK-PL----MPSYIN 442 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 442 (761)
.+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778888999999999988876421 2221 12334666666777899999999998873222 23 346888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLE---KC---RPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSC 510 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~---~~---~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~ 510 (761)
+...|...|++++|...|+++.+ .. .+. ..+|..+...|.+.|++++|.+.+++..+. + ..+. ..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHHHHHHHH
Confidence 99999999999999999999874 11 122 337888999999999999999999887642 2 1222 6789
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHH
Q 004324 511 NIILSAYLSSGD-FVKAEKIYDLMCL 535 (761)
Q Consensus 511 ~~li~~~~~~g~-~~~A~~~~~~m~~ 535 (761)
..+...|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998874
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=2.2e-05 Score=67.31 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|.++++++.+.. +.+..++..+...|.+.|++++|..+|+.+.+..+.+..++..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3333333344444444444444433321 112333333333444444444444444443332233344444444444444
Q ss_pred CCHHHHHHHHHHhhh
Q 004324 485 GNIEKAEEIFNHMHS 499 (761)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (761)
|++++|...|+++..
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=8.1e-05 Score=75.46 Aligned_cols=163 Identities=7% Similarity=0.019 Sum_probs=125.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT----PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAYH 406 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 406 (761)
..+..+...|++++|.+++++..+.... ++. ..+..+...|...|++++|...|++..+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999998875432 221 13445677777788999999999999873222 23 33689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC-HHHH
Q 004324 407 KIIELLCKAEETELTESLMKEFVE----T-GMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPN-RTIY 474 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~----~-g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~-~~~~ 474 (761)
.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+ +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999885 1 22222 34788999999999999999999998874 22222 6789
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHhhh
Q 004324 475 GIYLESLKNAG-NIEKAEEIFNHMHS 499 (761)
Q Consensus 475 ~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (761)
..+...|.+.| .+++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999 56999999887654
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.29 E-value=5.2e-05 Score=76.89 Aligned_cols=167 Identities=10% Similarity=-0.035 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-----PAYHKIIELLCKAEETELTESLMKEFVETGM---KPL--MP 438 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~ 438 (761)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777777777777777766554221111 1233445556677788888888888775321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-CH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ---TIGV-NT 507 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~~p-~~ 507 (761)
+++.+...|...|++++|...|++..+ ..+.+ ..+|+.+...|.+.|++++|...+++..... .... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888888999999888888773 22221 2588899999999999999999999876531 0111 16
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 004324 508 RSCNIILSAYLSSGDFVKA-EKIYDLMCL 535 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A-~~~~~~m~~ 535 (761)
.+|..+...|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7888999999999999999 777887663
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.27 E-value=4e-05 Score=65.58 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|.++|+++.+.. +.+..+|..+...+...|++++|..+++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1233444444444444455555555544444432 223444444555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
..|++++|...|+++.+..+.+...+..+...+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555555555555554442233344444443333
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=9.3e-06 Score=70.67 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+......|.+.|++++|.+.|++.++..+.+..+|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 3455555566666666666666666555444555666666666666666666666666655543 23455566666666
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|++.|++.++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666553
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=4.1e-05 Score=69.66 Aligned_cols=128 Identities=11% Similarity=0.101 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|...|.+..+.. +.+..+|..+...+...|++++|...+++..+.. +.+..++..+...|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555556666666666666555432 2245555556666666666666666666665542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHhh
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIY--LESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~ 498 (761)
..|++++|...|++..+..+.+...+..+ +..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666665334444444333 333556677777777766543
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00047 Score=70.55 Aligned_cols=237 Identities=10% Similarity=0.000 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG-DVEDAEK 353 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~ 353 (761)
++.+|...+..+++.+. ..++|+++++++...... +..+|+.--.++...| .++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~e--------------------~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~ 110 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE--------------------KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELR 110 (349)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56666666666655442 245677888887765322 4555676666666777 5889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHH
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKI-G-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--------LTES 423 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~ 423 (761)
+++.+....++ +..+|+.--..+.+. + +.++++++++.+.+.. +-|..+|+--.-.+.+.|..+ ++++
T Consensus 111 ~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 111 LMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 99998888765 677888776666666 6 7889999998888753 337777776655555555555 8888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH---------
Q 004324 424 LMKEFVETGMKPLMPSYINLTNMYLNLGM-------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI--------- 487 (761)
Q Consensus 424 l~~~m~~~g~~pd~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~--------- 487 (761)
.++++.+.. .-|..+|+.....+.+.+. ++++.+.+.+.+...+-|...|+-+-..+.+.|+.
T Consensus 189 ~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 189 WCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 888888865 3477788887777777775 67888888888876778899999888888777753
Q ss_pred -----------HHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 488 -----------EKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 488 -----------~~A~~l~~~m~~~g----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
....+...++...+ .-.+....+..|...|...|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34444444444331 0136788899999999999999999999999975
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.21 E-value=3.4e-05 Score=69.39 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
...+..+...|.+.|++++|...|+...+..+.+...|..+..+|...|++++|...|++..... +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 45677888889999999999999999988667789999999999999999999999999998864 4467889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCccChH
Q 004324 517 YLSSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
|.+.|++++|+..|++..+.. |++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999998643 5544
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=3.6e-05 Score=66.49 Aligned_cols=115 Identities=13% Similarity=-0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+....+..+.+...|..+...|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444444444555544444444432 12344444444445555555555555555444333344555555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC
Q 004324 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g 521 (761)
.|++++|.+.|++..... +.+...+..+...+.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 555555555555555432 223444444444444443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.18 E-value=2.6e-05 Score=73.80 Aligned_cols=63 Identities=5% Similarity=-0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|...+++... .+....-..++..+...|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445555555556666666665555442 110000122345555666666666666666666554
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.17 E-value=0.00027 Score=71.51 Aligned_cols=166 Identities=8% Similarity=0.025 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--H
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-----PAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSAS--V 402 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~ 402 (761)
..+...+..+...|++++|.+.+....+....... ..+..+...|...|++++|...|.+..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44556778889999999999999888876433211 224446667788899999999999887532 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVET-GMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRP-N 470 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p-~ 470 (761)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|...+++..+ +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998731 11222 25889999999999999999999999874 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 004324 471 RTIYGIYLESLKNAGNIEKA-EEIFNHMH 498 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 498 (761)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67889999999999999999 77777654
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=3.1e-05 Score=67.34 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...+++..+..+.+...|..+...|.+.|++++|.+.|++..+
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333444444444444443332223344444444444444444444444444443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.15 E-value=5.4e-05 Score=71.55 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=118.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAE 416 (761)
Q Consensus 342 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g 416 (761)
....|++++|.++++.+.. .......++..+...|...|++++|...|++.... +..+ ...+++.+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3468999999996655543 33335678899999999999999999999987652 1122 3456788888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhc
Q 004324 417 ETELTESLMKEFVET----GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNA 484 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~----g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~ 484 (761)
++++|...+++..+. +-.| ...++..+...|...|++++|...+++..+ .-..+ ..++..+...|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999998763 2111 245678889999999999999999999874 11122 23467888999999
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988763
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.14 E-value=0.0048 Score=67.26 Aligned_cols=355 Identities=12% Similarity=0.053 Sum_probs=219.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHhcC-CCCCC
Q 004324 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK-FAKCRDIFDDIINQ-GRV-PSEMTFHILIVAYLSA-PVQGC 233 (761)
Q Consensus 158 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~-g~~-pd~~~~~~li~~~~~~-~~~g~ 233 (761)
|.++.+.++|+..+.. .|++.+|...+....+.+. .+....+|+..... |.. ++...|...+.-+... ..+++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7789999999999874 3588899998888877763 46677888876653 433 3677888888765410 01356
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC--------CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG--------LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~--------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 305 (761)
.+.+..+|++.... ...--...|..... +-...+. ...+.+..|..+++.+...-...+...+..++...
T Consensus 105 ~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 105 IEKIRNGYMRALQT-PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHTS-CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88899999988863 11111111211111 0000000 00013344555555443210001122333332211
Q ss_pred hhccCC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 306 SYQDNI-----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 306 ~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
--...+ ..+++..+|+++.... .-+...|...+.-+.+.|+.+.|..++++.... + .+...|. .|+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhh
Confidence 100001 1356778899888753 345778888888888999999999999999988 3 2333333 34443
Q ss_pred CChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERL---------GSA---SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
...++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|+.. +.. ..+...|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 232322 33333210 001 1245777777777788999999999999 321 234445543333322
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 449 NLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 449 ~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
..+ +.+.|..+|+...+.++.+...|...++...+.|+.+.|..+|+...+ ....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHH
Confidence 333 699999999999885555566788889988999999999999999832 5778988888888899999999
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
++++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=7.2e-05 Score=64.56 Aligned_cols=116 Identities=10% Similarity=-0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...++...+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444555555555555555555554431 2234445555555555555555555555555432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+.|++++|...|+...+..+.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55666666665555554333445555555555555444
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.11 E-value=4.3e-05 Score=79.21 Aligned_cols=97 Identities=16% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
..+|..+..+|.+.|++++|...+++.++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46778888888888888888888888887556788889999999999999999999999988864 4467788888888
Q ss_pred HHhCCCHHHH-HHHHHHHHH
Q 004324 517 YLSSGDFVKA-EKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A-~~~~~~m~~ 535 (761)
+.+.|+.++| .++|++|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8899998888 557777763
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.11 E-value=1.1e-05 Score=72.41 Aligned_cols=95 Identities=13% Similarity=-0.002 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+...|++++|...|....+..+.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 3444455555555555555555555554334455555555555555555555555555555432 22344555555555
Q ss_pred HhCCCHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~ 534 (761)
...|++++|.+.|++..
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555554
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=5.3e-05 Score=74.97 Aligned_cols=187 Identities=7% Similarity=-0.093 Sum_probs=116.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCC---------------
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYK-------MEAYAKIGEFMKSLEIFREMQERLGSAS--------------- 401 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 401 (761)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456777777777777766544 45666665 4555555555555544443322 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--HH
Q 004324 402 -------VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RT 472 (761)
Q Consensus 402 -------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~ 472 (761)
...+-.....+...|++++|.++|..+...+ |+......+...|.+.+++++|+..|....+...|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123344556677777777777777766533 544455566667777888888888887554311111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..+..++.+.|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66777788888888888888888876432 3243 235566667778888888888888888864
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.11 E-value=9.3e-05 Score=64.22 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|...-..|.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|...|++.++..+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 4444445555555555555555555432 224455555555555555555555555555543344556666666666666
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666666554
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.09 E-value=5.3e-05 Score=76.31 Aligned_cols=41 Identities=5% Similarity=-0.035 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh-hhccCCCC
Q 004324 586 ESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY-HEWLHPSF 626 (761)
Q Consensus 586 ~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~-g~~~~a~~ 626 (761)
.|+.++|.+.++ ++++|++......+..++.+. +.+++|..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 578888887776 777887766666666666655 44444443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.09 E-value=1.8e-05 Score=79.83 Aligned_cols=193 Identities=9% Similarity=-0.048 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|...+++..+.. +-+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556777778888889999999999888877543 67788888888899999999999998887652 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
+|...|++++|...|++..+.. |+. ..+...+....+ ...+...........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8899999999999888877632 110 011111111111 1111111111112345555555555333 2689999
Q ss_pred HHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhC-CCHHHHHHHHHHHHH
Q 004324 490 AEEIFNHMHSDQTIGVNTR-SCNIILSAYLSS-GDFVKAEKIYDLMCL 535 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~~-t~~~li~~~~~~-g~~~~A~~~~~~m~~ 535 (761)
|.+.+++..+.. |+.. ....+-..+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999998888753 5543 333443444444 668899999998875
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=7.6e-05 Score=64.80 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
..|..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. ..+...+..+..+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 344444444555555555555555444321 1234444444445555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
.+.|++++|.+.|++..+..+.+...+..+...+.+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 5555555555555555442223334444444444433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=3.1e-05 Score=71.70 Aligned_cols=119 Identities=10% Similarity=0.137 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNI--EKA 490 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~--~~A 490 (761)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555666666555542 23455666666666666666666666666655334456666666666 6677776 777
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...|++..... +-+...|..+...|...|++++|...|++..+
T Consensus 101 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777653 33466677777777777777777777777775
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=0.00012 Score=72.39 Aligned_cols=193 Identities=9% Similarity=-0.033 Sum_probs=140.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC-----
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSV-------LRVCAKEGDVEDAEKTWLRLLE------------SDNG----- 364 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~------------~g~~----- 364 (761)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..++...+..-.+ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 468899999999999886322 45667766 4556666666666555555444 1210
Q ss_pred ---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH
Q 004324 365 ---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPS 439 (761)
Q Consensus 365 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t 439 (761)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 002344557788999999999999999887643 554466666678899999999999998554321 111 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCR-PN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
+..+..++...|++++|+..|++...+.. |. ......+..++.+.|+.++|..+|+++.... |+..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~ 242 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPK 242 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHH
Confidence 78889999999999999999999986433 53 4477788889999999999999999999864 6633
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.06 E-value=3.7e-05 Score=66.92 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~p~----~~t~~~ 512 (761)
.++..|...|.+.|++++|...|++.++-.+.+..+|+.+..+|.+.|++++|++.|++..+... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35566777777888888888888887765566778888888888888888888888888765320 0111 246777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
+..+|...|++++|++.|++.++ ..|+|++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77888888999999999988875 34677664443
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.05 E-value=8e-05 Score=66.91 Aligned_cols=96 Identities=9% Similarity=-0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44455555556666666666666665542 22455566666666666666666666666655344556666666677777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 004324 484 AGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (761)
.|++++|...|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.05 E-value=4.3e-05 Score=70.71 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=69.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMH--DR 455 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~~--~~ 455 (761)
..|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554432 2244555556666666666666666666655532 2244555555555 5566665 66
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
|...|+...+..+.+...|..+...|...|++++|...|++.....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6666666665444556667777777777777777777777776653
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=0.00011 Score=76.02 Aligned_cols=146 Identities=9% Similarity=-0.001 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...|.+.|++++|.+.|++..+........ ..+.+.++ ... ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~----~~~----~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKA----QAL----RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHH----HHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHH----HHH----HHHHHHHHHH
Confidence 35667777777788888888888887777665332100 00000000 000 1344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+|.+.|++++|...+++.++.. +.+..++..+..+|...|++++|...|++..+..+.+..++..+...+.+.|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665542 224556666666666666666666666666654455666677777777777777766
Q ss_pred -HHHHHHhh
Q 004324 491 -EEIFNHMH 498 (761)
Q Consensus 491 -~~l~~~m~ 498 (761)
..+|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555554
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.00 E-value=2.2e-05 Score=70.51 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=92.7
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|++.... .| +...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++..+..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44444432 23 44567778889999999999999999999864 4478889999999999999999999999998855
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
+.+...|..+..+|...|++++|.+.|++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6788899999999999999999999999988753
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=0.00027 Score=59.54 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|...++...... +.+...+..+...|...|++++|...+++..+..+.+...|..+...|...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3333334444444444444444443321 112333333444444444444444444444332223344444444444444
Q ss_pred CCHHHHHHHHHHhhh
Q 004324 485 GNIEKAEEIFNHMHS 499 (761)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (761)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.0041 Score=63.26 Aligned_cols=188 Identities=8% Similarity=-0.012 Sum_probs=134.8
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 343 AKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 343 ~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
.+.|.+. +|.++++.+...++. +..+|+.--..+...|. +++++.+++.+.... +-+..+|+.---.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 678888888877654 45566653222222222 577888888887653 3377778777777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----
Q 004324 412 LCKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---- 484 (761)
Q Consensus 412 ~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---- 484 (761)
+.+.+ .+++++.+++.+.+.. .-|..+|+.-.-.+.+.|. .+++.+.+..+.+..+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 77777 4788888888888865 3467777777777777777 58888888888876678888888877776665
Q ss_pred ----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHH
Q 004324 485 ----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-----------GDFVKAEKIYDLMCL 535 (761)
Q Consensus 485 ----------g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 535 (761)
+.++++++.+++..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 45889999999998874 55788887666666655 457788888888885
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.97 E-value=1.4e-05 Score=75.83 Aligned_cols=130 Identities=15% Similarity=-0.049 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KPL--------------MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (761)
.+..+...+.+.|++++|...|++..+..- .|+ ..++..+..+|.+.|++++|...++...+..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445555555555555555555554211 110 25666777777777777777777777776445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE-KIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~ 535 (761)
.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|+..++. ..|..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777777777778888888888887777653 335566666666666666666665 45555543
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.97 E-value=0.0013 Score=67.25 Aligned_cols=257 Identities=10% Similarity=0.032 Sum_probs=170.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-E-ETEL 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~ 420 (761)
+.+..++|.++++.+...++. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.--..+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 345557899999999998765 6778888777777788 5999999999998764 34777888877777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC------
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD--------RLHLAFSECLEKCRPNRTIYGIYLESLKNAGN------ 486 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~------ 486 (761)
++++++.+.+.. .-|..+|+--.-.+.+.+..+ ++.+.++++.+..+-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 999999998754 336777776655555555555 88889998888667899999999888888876
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccc--c
Q 004324 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP--V 563 (761)
Q Consensus 487 -~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~--~ 563 (761)
++++++.++++.... +-|...|+-+-..+.+.|+...-+ +..--...+-.+++.. ......+.+++... .
T Consensus 223 ~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPI-LPAILPYTASKLNPDI----ETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGG-HHHHGGGTC------------------CCCCC-CCCS
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccc-cccccccccccccccc----hhHHHHHHHHHhccccc
Confidence 789999999988874 457888888777777766531000 0000000011111110 00111111111100 0
Q ss_pred cCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH---hhccccchhhHHHHHH
Q 004324 564 SLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR---FQFNENSRMHSVLRRY 613 (761)
Q Consensus 564 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---~~l~p~~~~~~~~l~~ 613 (761)
.... +...++.-|...|...|+.++|..+++ -+.+|-...++.....
T Consensus 296 ~~~~---~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPL---PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 0011 136677778888888899899998888 3678877766665544
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=1.6e-05 Score=75.38 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-A--------------SVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
..+..+...|.+.|++++|...|++.....-. | ....|..+..+|.+.|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455556666666666666666666543111 1 02567777778888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCC
Q 004324 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE-EIFNHMHSDQ 501 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g 501 (761)
+.+..++..+..+|...|++++|...|++..+..+.+...+..+...+...|+.+++. ..|..|...+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456778888888888888888888888887655567778888888888777777766 5566665544
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=3.3e-05 Score=68.70 Aligned_cols=96 Identities=14% Similarity=-0.059 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+.+.|++++|...|....+..+.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 3445555666667777777777777665445566667777777777777777777777766653 33455666666677
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|.+.|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776664
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.0087 Score=60.82 Aligned_cols=186 Identities=6% Similarity=-0.025 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004324 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE--FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE-TELTESL 424 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l 424 (761)
++++..+++.+....++ +..+|+.-...+.+.|+ +++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777788887777654 67777776666667773 778888888887764 3377777777777777777 5788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc------
Q 004324 425 MKEFVETGMKPLMPSYINLTNMYLNL--------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------ 484 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------ 484 (761)
+..+++.. .-|..+|+.....+.+. +.++++.+.+.......+-|..+|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88888765 34666776665555554 4577888888888876678888998766666655
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILS-----AYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 485 -----g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
+.++++++.++++.+.. ||. .|..+-. +....|..+++..++.++++ +||.-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~Dp~r 308 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA----VDPMR 308 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH----HCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH----hCcch
Confidence 46899999999999854 664 3432222 22246778899999999986 67764
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=0.00013 Score=62.90 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~p~----~~t~~~ 512 (761)
..+..+...|...|++++|...|....+..+.+...+..+...|...|++++|...|++...... ..++ ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666667777777777666654455666777777777777777777777777665420 0111 566777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
+...|.+.|++++|.+.|++..+.. |++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 115 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVL 115 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHH
Confidence 7777777888888888887777532 455443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=8.6e-05 Score=62.08 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILS 515 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~ 515 (761)
..+..+...+...|++++|...|++..+..+.+...|..+...|...|++++|.+.|++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 3445555666666677777777766665445566677777777777777777777777777653 23 4667777777
Q ss_pred HHHhC-CCHHHHHHHHHHHHH
Q 004324 516 AYLSS-GDFVKAEKIYDLMCL 535 (761)
Q Consensus 516 ~~~~~-g~~~~A~~~~~~m~~ 535 (761)
.|.+. |++++|.+.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 77777 777777777777764
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00021 Score=61.70 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+.+.|++++|...|.+..+..+.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 4556666777778888888888887776556677888888888888888888888888888764 34577888888888
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888888875
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00023 Score=62.34 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 435 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
.+...+..+...|.+.|++++|...|....+..+.+...|..+...|...|++++|...|++..... +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 3566777777888888888888888888776556678888888888889999999999998888764 44677888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 889999999999999988875
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.90 E-value=0.00058 Score=57.41 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554431 1234445555555555555555555555555432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (761)
..|++++|...+....+..+.+...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5566666665555555433333444333
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00029 Score=60.80 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+.+...|..+..+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44455555566666666666666665543 22455666666666666666666666666665444556666677777777
Q ss_pred cCCHHHHHHHHHHhhh
Q 004324 484 AGNIEKAEEIFNHMHS 499 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~ 499 (761)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777777776655
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00016 Score=64.21 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|+...+..+.+...|..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456677788999999999999999999864 347888999999999999999999999999986677888999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 004324 482 KNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~ 500 (761)
...|++++|.+.|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=0.00014 Score=62.69 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----HHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK---CRPN----RTIYGI 476 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~~p~----~~~~~~ 476 (761)
.|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+....+. ..++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555555432 223445555555555555555555555555431 1122 556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
+...|...|++++|.+.|++..+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 6677777777777777777766643 4544444333
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.84 E-value=0.0002 Score=65.26 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
...+..+...|.+.|++++|...|++.++..+.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44556666667777777777777777666445567777777777777777777777777777653 3356777777777
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|.+.|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777765
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00054 Score=60.60 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
...|..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...++...+..+.+...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444445555555555444442 233 34444444445555555555555555444223344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+|...|++++|.+.|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555543
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00016 Score=60.33 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESL 481 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~ 481 (761)
.|..+...+...|++++|...+++..+.. ..+..++..+...|...|++++|...|++..+..+. +...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555555666666666666655542 224555666666666666666666666666654344 566777777777
Q ss_pred Hhc-CCHHHHHHHHHHhhhCC
Q 004324 482 KNA-GNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 482 ~~~-g~~~~A~~l~~~m~~~g 501 (761)
.+. |++++|.+.|++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 777 77777777777776653
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.80 E-value=0.00033 Score=63.78 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
...|..+...+.+.|++++|...|++.++.. .-+...|..+..+|.+.|++++|...|++.++..+.+...|..+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666667777777777777777777643 235667777777788888888888888877765566788888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCC
Q 004324 482 KNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g 501 (761)
...|++++|.+.|++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887753
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.00052 Score=59.93 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+...|..+...+...|++++|...|....+.. +.+...+..+..+|...|++++|...++...+..+.+...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555555566666666666666666655543 22455666666666666666666666666665344556667777777
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 004324 481 LKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (761)
|...|++++|...|++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766553
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0012 Score=70.62 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=132.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIP----------------TPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASV 402 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 402 (761)
..+.+.|++++|.+.|..+.+...... ..++..|...|.+.|++++|.+++..+... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777777766532211 123667888888899999998888876542 111122
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--C
Q 004324 403 P----AYHKIIELLCKAEETELTESLMKEFVE----TGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC--R 468 (761)
Q Consensus 403 ~----t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~ 468 (761)
. ..+.+-..+...|+.++|..++..... .+..+. ..++..|...|...|++++|..++..+.. +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122233334456788899888887764 233333 45778888999999999999999988764 21 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CC-C-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IG-V-N--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~-p-~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+ ...+|..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 245788889999999999999999987654210 11 1 1 34667777778889999999998888764
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.71 E-value=0.0011 Score=57.29 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGI 476 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~ 476 (761)
++.-+-..+.+.|++++|+..|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++.++ ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555555432 22344555555555555555555555555543 11111 235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
+...|...|++++|++.|++.... .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 666777777777777777776653 3555443
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0014 Score=72.88 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM----------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-- 485 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-- 485 (761)
.++|++.++.+.+.. +-+..+|+.--..+.+.|+ ++++.+.++.+.+..+.+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 355666666666643 1234445544444444454 788888888888766788889988888888888
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccccc
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 564 (761)
++++|++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++. +|.-
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----~p~n-------------------- 177 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSN-------------------- 177 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----TCCC--------------------
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCCC--------------------
Confidence 6799999999998875 457888888888888888 888999998888753 2221
Q ss_pred CCCchhhHHhHHHHHhhhhhh--------------hhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccC
Q 004324 565 LNLSSEQRENLIGLLLGGLCI--------------ESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 565 ~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~ 623 (761)
..+|+.....+.. .+.++++.+.+. +.++|++.+.|..+..++.+.++.++
T Consensus 178 --------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 --------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp --------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred --------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2222222222221 366788888877 88999999999999999999888665
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0017 Score=69.52 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=137.3
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEG----------------KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT-- 367 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-- 367 (761)
+.+.|++++|++.|....+...... ...+..+...|.+.|++++|.+.+..+.+.-.. ++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3455677888888877766432111 124678899999999999999999887653111 111
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C-
Q 004324 368 --PAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVET--GMK--P- 435 (761)
Q Consensus 368 --~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~--p- 435 (761)
.+.+.+-..+...|+.++|..++.+... .+..+. ..++..+...|...|++++|..++++.... +.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1233333444456899999999987753 233333 456788999999999999999999998763 221 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
...++..++..|...|++++|..++++... ....+ ...+..+...+...|++++|...|.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 246788999999999999999999998764 22222 34677778888899999999998887754
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00022 Score=64.02 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTR 508 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~~~ 508 (761)
++..+...|...|++++|...+++..+ .-.++ ..++..+...|...|++++|.+.+++.... +.......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444555555555666666555555443 00111 345666777777778888887777776542 10001134
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777788888888888888887764
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00028 Score=60.61 Aligned_cols=93 Identities=12% Similarity=-0.039 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
..+...+.+.|++++|...|+..++..+.+...|..+..++...|++++|+..|++..+.. +-+...|..+...|.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3445556666777777777777665445567777777777777777777777777776653 33556677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMCL 535 (761)
Q Consensus 521 g~~~~A~~~~~~m~~ 535 (761)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777663
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.0013 Score=57.98 Aligned_cols=97 Identities=16% Similarity=0.054 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (761)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+...|.+.|++++|...|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555555555555555555543 22 3444455555555555555555555544431 12344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 407 KIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.+..+|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555555444
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.66 E-value=0.0003 Score=63.89 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhh
Q 004324 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES 587 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 587 (761)
..|..+..+|.+.|++++|+..+++.++ .+|. +..+|..+..++...|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~----~~p~----------------------------~~~a~~~~g~~~~~~g 111 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLK----REET----------------------------NEKALFRRAKARIAAW 111 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTT----------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCc----------------------------chHHHHHHHHHHHHHh
Confidence 4566666666666666666666666664 2222 1344555555566666
Q ss_pred hhhHHHHHHH--hhccccch-hhHHHHHHHHHhhhhccCCCC
Q 004324 588 DEKRKRHMIR--FQFNENSR-MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 588 ~~~~a~~~~~--~~l~p~~~-~~~~~l~~~~~~~g~~~~a~~ 626 (761)
++++|...++ +.++|++. .....+..+..+.++..+..+
T Consensus 112 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k 153 (162)
T 3rkv_A 112 KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153 (162)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666 66666665 445555555555555555443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.64 E-value=0.00033 Score=62.81 Aligned_cols=131 Identities=14% Similarity=0.000 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MP 438 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ 438 (761)
++..+...|...|++++|...|++..+... .++ ..++..+...+...|++++|...+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444445555555555555544432100 001 12444555555556666666665555543110 011 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...+++..+ ... ....++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666677777777777766653 111 1134667777788888888888888877654
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.63 E-value=0.00049 Score=59.02 Aligned_cols=92 Identities=8% Similarity=-0.102 Sum_probs=51.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+..+.+...|..+...|.+.|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3344555555555555555555532 224455555555555566666666666555543344556666666666666666
Q ss_pred HHHHHHHHHhhhC
Q 004324 488 EKAEEIFNHMHSD 500 (761)
Q Consensus 488 ~~A~~l~~~m~~~ 500 (761)
++|...|++..+.
T Consensus 102 ~~A~~~~~~al~~ 114 (121)
T 1hxi_A 102 NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666553
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.56 E-value=0.00068 Score=73.41 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ ...+ ...+|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 4566777777888888888888887776531 111000 0000000 0000 13566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
|.+.|++++|...+++.++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776445677778888888888888888888888877753 23455677777777777777766
Q ss_pred H-HHHHHHHH
Q 004324 527 E-KIYDLMCL 535 (761)
Q Consensus 527 ~-~~~~~m~~ 535 (761)
. .++.+|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555543
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.56 E-value=0.0011 Score=71.81 Aligned_cols=147 Identities=12% Similarity=0.012 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
....+..+...|.+.|++++|...|++..+....... + .-+... ++... ....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~----~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESF----LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHH----HHHHHHHHHH
Confidence 3567888899999999999999999998875432110 0 000000 11111 2345556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+|.+.|++++|+..+++.++.. ..+..+|..+..+|...|++++|...|++..+..+.+...|..+...+.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666643 234666677777777777777777777777664455566777777777777777766
Q ss_pred H-HHHHHhhh
Q 004324 491 E-EIFNHMHS 499 (761)
Q Consensus 491 ~-~l~~~m~~ 499 (761)
. .++..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555544
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.50 E-value=0.00075 Score=73.47 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=48.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444331 1124444444444444455555555544444432 1234444445555555555555555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFN 495 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 495 (761)
.|++..+..+.+...+..+..+ +.+.|++++|.++++
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555444222222333333333 455555555555555
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.49 E-value=0.00011 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...|++..+..+.+..++..+..+|.+.|++++|...|++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432233344444444444444444444444444443
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.48 E-value=0.0024 Score=54.88 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=59.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSA 516 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~~ 516 (761)
+...+...|++++|...|+.+.+..+.+. ..+..+...|.+.|++++|...|++..... +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 44455666667777776666665222233 466667777777777777777777776653 222 4566667777
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777775
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.47 E-value=0.0037 Score=53.63 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHh
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLM---PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKN 483 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~ 483 (761)
..+...|++++|...|+...+..- .+. ..+..+..+|.+.|++++|...|+...+..+.+ ..++..+..+|.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 344455555555555555554321 111 344455555555566666666665555422223 4555666666666
Q ss_pred cCCHHHHHHHHHHhhhC
Q 004324 484 AGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (761)
.|++++|...|++....
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666654
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.46 E-value=0.00028 Score=76.93 Aligned_cols=121 Identities=12% Similarity=-0.025 Sum_probs=97.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
+...+.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+.+++..+..+.+..+|..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3345667899999999999999863 335889999999999999999999999999986677899999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYD 531 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~ 531 (761)
++|.+.|++..+.. +-+...+..+..+ +.+.|++++|+++++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998864 2234455555555 888899999999988
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0018 Score=58.67 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++.++
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345678888888999999999999999888864 45678888888999999999999999998885
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.39 E-value=0.0014 Score=68.57 Aligned_cols=139 Identities=10% Similarity=0.037 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTN 445 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~ 445 (761)
...|..+...|.+.|++++|++.|++..+.- +.. ......+++.. ..| +..+|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH---------HHHHHHHHHHHHHH
Confidence 4567777888888888888888888766520 000 00001111100 111 2456666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
+|.+.|++++|...+++.++..+.+...|..+..+|...|++++|++.|++..+.. +-+...+..+...+.+.++.++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766445566777777777777777777777777776653 2345556666666665555555
Q ss_pred HHH
Q 004324 526 AEK 528 (761)
Q Consensus 526 A~~ 528 (761)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.29 E-value=0.0037 Score=65.38 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+.+.|++++|.+.|++..+.-. . . ......+++.+ ... -+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~----~~~----~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK----LQP----VALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG----GHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH----HHH----HHHHHHHHHHHH
Confidence 66788889999999999999999998876210 0 0 00001111110 000 133455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|...+++.++.. ..+...+..+..+|...|++++|...|++..+..+.+...+..+...+.+.++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666532 2245566666666666666666666666666544445666666666666666655554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.28 E-value=0.00051 Score=58.41 Aligned_cols=85 Identities=11% Similarity=0.079 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDN--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
.|++++|...|++..+.+. +-+...|..+...|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666666531 1133455556666666666666666666665542 223455555666666666666666
Q ss_pred HHHHHHHH
Q 004324 423 SLMKEFVE 430 (761)
Q Consensus 423 ~l~~~m~~ 430 (761)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.27 E-value=0.0028 Score=55.69 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAE 491 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 491 (761)
++.++|.+.|++..+.| .|+.. |...|...+.+++|.++|.+..+ .-+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35667777777777766 33332 55556666667777777777665 2456777777777777 67888888
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (761)
++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888777 67777777777777 7788888888888877653
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.26 E-value=0.0032 Score=56.15 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRP-------NR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTI 503 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~ 503 (761)
+......+.+.|++++|...|++.++-.+. +. ..|+.+..++.+.|++++|+..+++..+. +.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666666541111 23 38888889999999999999999888874 112
Q ss_pred CCC-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 504 GVN-TRSC----NIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 504 ~p~-~~t~----~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+ ...| ...-.++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 465 4678 8899999999999999999999985
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.25 E-value=0.00073 Score=69.92 Aligned_cols=148 Identities=9% Similarity=-0.003 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
...+..+...|.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 566778888889999999999999998765 244332 223333444433221 1377888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH-HHhCCCHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA-YLSSGDFVK 525 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~-~~~~g~~~~ 525 (761)
|.+.|++++|...++..++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987556788999999999999999999999999988753 2234455544444 334567788
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8889988874
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.21 E-value=0.016 Score=64.20 Aligned_cols=174 Identities=9% Similarity=-0.042 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
.-++|.+.++.+.+.++. +..+|+.--..+.+.|+ +++|++.++++.+.. +-+..+|+.---.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778889888888765 56778776666666666 889999999988764 337778888888888888
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---------
Q 004324 417 --ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------- 484 (761)
Q Consensus 417 --~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------- 484 (761)
+++++++.++++.+.. .-|..+|+.-...+.+.| ..+++.+.++++.+..+-|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999999865 336788888777788888 788999998888887778889998888777763
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 485 -----g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
+.+++|++.+++..... +-|...|+-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999888764 4577888888888887777444
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.16 E-value=0.0014 Score=67.81 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|+.+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 6678888888999999999999999988764 23221 223334444433221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A 490 (761)
|.+.|++++|...+++.++.. ..+...|..+..+|...|++++|...|++..+..+.+...+..|... ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988854 34678888899999999999999999998876444456666666655 3345677888
Q ss_pred HHHHHHhhhC
Q 004324 491 EEIFNHMHSD 500 (761)
Q Consensus 491 ~~l~~~m~~~ 500 (761)
.++|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888765
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.08 E-value=0.0068 Score=65.59 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC----CHHHHHH
Q 004324 412 LCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP----NRTIYGI 476 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p----~~~~~~~ 476 (761)
+-..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++.+.++ -..| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 12222 45677777777777777777777777653 1222 2446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|...|++++|+.++++..+ .|.-.|+. .+.+.+-.++...|.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877643 23122333 3445566677788889999999998875
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00043 Score=57.78 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+..+...+...|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555433445555555556666666666666666665553
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.04 E-value=0.0083 Score=53.43 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIY----GIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|+.+..++.+.|++++|+..+++.++- .+-+...| .....+|...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666677777766666666653 44456677 8888999999999999999998765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.01 E-value=0.005 Score=66.63 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQER---LGSA----SVPAYHKIIELLCKAEETELTESLMKEFVET---GMKPL----MPSYI 441 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~ 441 (761)
.+-..|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++.++. -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566777777776665432 1111 2345677777777777777777777766541 11222 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|...|...|++++|..++++..+ -.-|+ ..+.+.|-.++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888877777653 12232 33455666777788889999999988876
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00093 Score=55.66 Aligned_cols=93 Identities=9% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------HHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYG 475 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~ 475 (761)
...|..+...+...|++++|...|++..+.. +.+...+..+..+|.+.|++++|...+++..+..+.+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445555555555666666666666555532 2245555556666666666666666666655432223 44444
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~ 495 (761)
.+..++...|+.++|.+.|+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 45555555555554444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.90 E-value=0.005 Score=51.75 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|...|++..+..+.+...|..+...|...|++++|...|++..... +.+...|..+...|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666556677888888888888888888888888887764 3456788888888888888888888888877
Q ss_pred H
Q 004324 535 L 535 (761)
Q Consensus 535 ~ 535 (761)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.89 E-value=0.029 Score=49.05 Aligned_cols=111 Identities=6% Similarity=-0.067 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVE 349 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 349 (761)
++.++|...|++..+.|.. ... +...+...+..++|...|++..+.| +...+..|-..|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~------lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC------LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH------HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh------HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3666666666666666522 211 2233444445555666665555543 44555555555555 55555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 004324 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERL 397 (761)
Q Consensus 350 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 397 (761)
+|.+.|+...+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555554 34455555555555 455555555555555443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.82 E-value=0.0091 Score=47.27 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+..+...|...|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444432233444444444555555555555555554444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.0074 Score=50.68 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|...|++..+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+...|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555432 234556666666666666666666666666654445566777777777777777777777776655
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.65 E-value=0.02 Score=45.11 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.|..+...|.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544431 12334444444444444555555544444444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.42 E-value=0.0083 Score=49.04 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (761)
..|..+...|.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|++.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333334444444444444444444433332 112333334444444444444444444433
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.41 E-value=0.01 Score=52.81 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhC
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-----------NIEKAEEIFNHMHSD 500 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~ 500 (761)
++|+..|++.++-.+.+..+|..+..+|...| ++++|.+.|++..+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 45555555555433445555666666665543 566666666666653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.39 E-value=0.015 Score=47.44 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
+...+..+...|.+.|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999855667889999999999999999999999988763
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.23 E-value=0.0093 Score=53.01 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN----------IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~ 518 (761)
+.+.+++|.+.++...+.-+.+...|+.+..++...|+ +++|+..|++..+.. +-+..+|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 44567777777777776556677888878777777766 469999999999964 346789999999999
Q ss_pred hCC-----------CHHHHHHHHHHHHH
Q 004324 519 SSG-----------DFVKAEKIYDLMCL 535 (761)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (761)
..| ++++|++.|++.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 875 89999999999996
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.69 E-value=0.055 Score=57.40 Aligned_cols=85 Identities=9% Similarity=-0.080 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCNIILSA 516 (761)
Q Consensus 451 g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~-~~t~~~li~~ 516 (761)
|++++|..++++.++ -+.|+ ..+++.|...|...|++++|+.++++... -|.-.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555442 11222 34677777777777777777777776643 2322344 3578888888
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888888764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.45 E-value=0.15 Score=52.01 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 346788889888888887899999999999999865 7888888888888999999999999998885
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.41 E-value=0.15 Score=54.09 Aligned_cols=90 Identities=11% Similarity=-0.069 Sum_probs=63.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCN 511 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~-~~t~~ 511 (761)
.+.+.|++++|..++++.++ -+.|+ ..+++.|...|...|++++|+.++++... -|.-.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777777664 12222 44778888888888888888888887653 2322344 36788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999888764
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.36 E-value=1.1 Score=37.88 Aligned_cols=137 Identities=15% Similarity=0.042 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-+ -.|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 35556666666665544 2455555555544444444444444443322 1121 123344433333
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+-.+ ..+....+..++.+...|+-++-.++..++... -+|+......+..||.+.|+..+|.+++.+..++|.
T Consensus 84 ~~~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332 244556666778888888888888888885444 357777788888888888888888888888888775
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.26 E-value=0.11 Score=55.03 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC---CCC-HHHHHHHHH
Q 004324 415 AEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KC---RPN-RTIYGIYLE 479 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~---~p~-~~~~~~li~ 479 (761)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++ -. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776652 22233 45677888888888888888888887763 12 222 447888899
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 004324 480 SLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.23 E-value=0.045 Score=44.09 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.+.+.|++++|...|++..+..+.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555443333444 5555555555555555555555555553
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.08 E-value=0.25 Score=52.43 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=65.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC----CHHH
Q 004324 409 IELLCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP----NRTI 473 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p----~~~~ 473 (761)
+..+.+.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|..++.+.++ -..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888888877752 12232 45778888888888888888888887764 1222 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999887654
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.94 E-value=1.5 Score=37.10 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETEL 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~ 420 (761)
-.|.++++.++..+..+.. +..-||.+|--....-+-+-..++++.+-+- -|... .-.++.+|++.+..
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~-- 90 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTL-- 90 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCC--
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcch--
Confidence 4577777777777777654 4556666666666555666666666555332 22211 12344444444322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..-+...++.....|+-++..++...+....+|+....-.+..+|.+.|+..+|.+++.+..++
T Consensus 91 ----------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 ----------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2334445566667777777777777765556777777777888888888888888888888887
Q ss_pred C
Q 004324 501 Q 501 (761)
Q Consensus 501 g 501 (761)
|
T Consensus 155 G 155 (172)
T 1wy6_A 155 G 155 (172)
T ss_dssp T
T ss_pred h
Confidence 7
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.88 E-value=0.082 Score=42.46 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMP-SYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
+.+.|++++|...+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 11233 444444444455555555555554443
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.86 E-value=0.36 Score=56.00 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
..++..+.+.|..++|+++.+.-.. -.......|++++|.++.+.+ .+...|..|..++.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555555555555554421111 012233455666655554321 2445566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
++++.|.+.|..+.. |..+...|...|+.+...++-+.....| + ++.-..+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~----~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTG----K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcC----c---hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655431 2233334444555554444444444443 1 122233344455555555555
Q ss_pred HHH
Q 004324 531 DLM 533 (761)
Q Consensus 531 ~~m 533 (761)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.65 E-value=0.77 Score=46.80 Aligned_cols=142 Identities=11% Similarity=-0.021 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHHHhhccCCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cC-----ChHHHHHHHHHHHh
Q 004324 293 IQKDIYSGLIWLHSYQDNID---KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAK---EG-----DVEDAEKTWLRLLE 360 (761)
Q Consensus 293 p~~~~~~~li~~~~~~~~g~---~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~m~~ 360 (761)
.+...|..++....+...++ ..+|..+|++..+. .|+ ...|..+.-+|.- .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34555665555554443333 46788888887765 454 2344433333320 00 00111111111111
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 361 S-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 361 ~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
. ....+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.... .|...|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 112345556555555555566666666666666553 55555555556666666666666666666653 344444
Q ss_pred H
Q 004324 440 Y 440 (761)
Q Consensus 440 ~ 440 (761)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.30 E-value=0.42 Score=38.10 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
+.|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 678888888877764 3456677777777888888888888888887543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.01 E-value=0.92 Score=52.49 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=24.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (761)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555554322 234555555555555555555555555543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.33 E-value=0.43 Score=38.06 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 436 LMPSYINLTNMYLNLGM---HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
|...+..+..++...++ .++|..++++.++..+.++.....+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444455555443322 4666666666665445566666666677777777777777777776654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.05 E-value=0.53 Score=41.21 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (761)
+..+.+.|.+..+.-.++..+.-.+.-++++.+ +++++..+|++..+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555434477777777778888877 5668888888877763 24 2445566667788888888888
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888885
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.80 E-value=0.62 Score=40.78 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG---MHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
+..+.+-|.+....|. ++..+...+..++++.. +.+++..+|+.+.+...| +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555555555553 66677777777777776 555777777777763223 34555566677788888888888
Q ss_pred HHHHhhhC
Q 004324 493 IFNHMHSD 500 (761)
Q Consensus 493 l~~~m~~~ 500 (761)
.++...+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888874
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.16 E-value=5 Score=35.97 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (761)
.-..+|+++.|.++.+++ -+...|..|-......|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 334556666666655443 245556666666666666666665555543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.41 E-value=1.6 Score=35.32 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
...+..|..+|.+.|++++|..++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444445555555555555555444
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.76 E-value=4.4 Score=32.65 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.+..|..+|.+.|++++|..++++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.94 E-value=2.9 Score=40.84 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKE-----RKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 159 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
....|...+++.++...--.+-..|+.|...|.+. |+.++|.+.|++-.+.+..-+..++...-..++. ..|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--PLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT--TTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--hcCC
Confidence 34667777888887641112467899999999994 9999999999999986432247788888888883 2599
Q ss_pred HHHHHHHHHHHHhcCCCC--CCHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQ--PRPSLHNS 259 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~--p~~~t~~~ 259 (761)
.++|.+.+++.... ... |+....|.
T Consensus 256 ~~~a~~~L~kAL~a-~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAI-DPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHC-CGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCChhHHHH
Confidence 99999999999986 344 66544443
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.68 E-value=3.1 Score=43.21 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWMEK 547 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 547 (761)
+...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|++..+ -|..|.|.+-+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44567788889999999999999988874 55888999999999999999999999998764 388888887444
Q ss_pred HHH
Q 004324 548 LDY 550 (761)
Q Consensus 548 ~~~ 550 (761)
+..
T Consensus 251 ~~~ 253 (388)
T 2ff4_A 251 NER 253 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.35 E-value=27 Score=40.30 Aligned_cols=150 Identities=9% Similarity=0.019 Sum_probs=63.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCC-HHHHHH---HHHHHHhcC
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA--KIGEFMKSLEIFREMQERLGSAS-VPAYHK---IIELLCKAE 416 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~---li~~~~~~g 416 (761)
+-.|+-+....++..+.+.. +..+...+.-+++ ..|+.+.+..+.+.+... .+ .+-|.+ +.-+|+..|
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555554432 2222222333333 446666666666555542 12 222321 223445555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004324 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-EKAEEIFN 495 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~ 495 (761)
+.....+++..+.... ..++.....+.-+....|+.+.+.+++..+.+...|.+.--.++.-+....|.. .+|.+++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6555555666555431 112222222222222344444444555444432233333333333333334332 45555555
Q ss_pred Hhhh
Q 004324 496 HMHS 499 (761)
Q Consensus 496 ~m~~ 499 (761)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 5554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.89 E-value=4.9 Score=33.72 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEK---AEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+--.+.-++++..+... +..++++....+ .| .....-.|.-|+.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555544333 555555555442 12 122233344456666666666666666664
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.33 E-value=4.9 Score=39.30 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC
Q 004324 332 KEVLLSVLRVCAKE-----GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI-GEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 332 ~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~ 399 (761)
-..|..+...|.+. |+.++|++.|++..+.++.-+..++....+.|+.. |+.++|.+.+++.......
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555666666663 77777777777777665433355666666666663 6777777777776665444
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.86 E-value=5.3 Score=33.55 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC--CHHHHHHHHHHHH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR---LHLAFSECLEKCRP--NRTIYGIYLESLK 482 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~~~p--~~~~~~~li~~~~ 482 (761)
++..-.....+..+.+-+......|. |+..+-..+..++.+.....+ +..++..+.+...| .....-.|.-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444444556677777777766664 788888888889998887666 88999998874333 3445556677999
Q ss_pred hcCCHHHHHHHHHHhhhCC
Q 004324 483 NAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g 501 (761)
+.|++++|.+.++.+.+..
T Consensus 86 klg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999853
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.80 E-value=38 Score=35.61 Aligned_cols=187 Identities=9% Similarity=0.094 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCC
Q 004324 312 DKERISLLKKEMQQA-----GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY----AKIGE 382 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~ 382 (761)
++..|++.+..+.+. ...-.......++..|.+.|+++...+.+..+.+..-. --.....+|..+ .....
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCc
Confidence 345555554444322 23445667778888888888888887777666554222 122223333322 22232
Q ss_pred hHHHHH--HHHHHH---HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 004324 383 FMKSLE--IFREMQ---ERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 383 ~~~A~~--~~~~m~---~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~li~~~~~ 449 (761)
.+.... +..... +..+.. .......|...|...|++.+|..++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222111 111110 011111 1122345666777778888888888777652 22111 3455666777777
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 450 LGMHDRLHLAFSECLE-----KCRPN--RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+++..|..+..++.. ...|+ ...|..++..+...+++.+|.+.|.+...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7788777777777642 12222 23456666677777777777777766643
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.96 E-value=23 Score=31.63 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL 420 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 420 (761)
.....|+++.|.++.+.+ -+...|..|-+...+.|+++-|.+.|....+ |..+.--|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888887665 1567888888888888888888888876643 2234444555666655
Q ss_pred HHHHHHHHHHcC
Q 004324 421 TESLMKEFVETG 432 (761)
Q Consensus 421 A~~l~~~m~~~g 432 (761)
-.++-+.....|
T Consensus 79 L~kla~iA~~~g 90 (177)
T 3mkq_B 79 LSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc
Confidence 544444444433
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.68 E-value=10 Score=42.66 Aligned_cols=50 Identities=18% Similarity=-0.032 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
.+.|+++-|+++-++...-.+-+-.+|-.|...|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455555555555554433444555666666666666666666555555
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.04 E-value=5.3 Score=45.02 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+-|...|+++.|+++-++.... .+-+-.||..|...|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456689999999999999886 34467899999999999999999999999884
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.98 E-value=6 Score=31.47 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.++.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44445555555556666666666666666666666666666666554444444455544
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.10 E-value=6.2 Score=40.88 Aligned_cols=69 Identities=4% Similarity=-0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRS 509 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~~t 509 (761)
...++..+...|+++++...+..+....+-+...|..+|.+|.+.|+..+|++.|+...+ -| +.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG-~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 344566677778888888777777765567888888889999999999999888887654 36 6776554
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.04 E-value=19 Score=31.23 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
.+++++|.++|+.+.+. .+-=...|..-..-=.+.|++..|.+++...+..+.+|.
T Consensus 73 i~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 36777888888877654 222255555555555677788888888877777665543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.56 E-value=35 Score=29.57 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
+++++|.++|+.+.+..+.=...|-....--.+.|++..|.+++......+ - -+.....+.|.-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~-k~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG-A-VPLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C-BCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-C-CcHHHHHHHHHh
Confidence 455555555555543111115555555555566666666666666666654 2 233444444433
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.94 E-value=60 Score=32.04 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=10.5
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~ 534 (761)
|.-.|+...|..+|+...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 444566666666666554
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.31 E-value=0.0028 Score=65.86 Aligned_cols=200 Identities=10% Similarity=0.037 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
+|..|..++.+.|++.+|++-|-+. -|...|.-+|.+..+.|.+++-...+...++..-.| ..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 4555555555555555555443211 133344555555555555555555554444332222 22234555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------------CCCCHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------------------IGVNTRS 509 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------------~~p~~~t 509 (761)
+.+++.+..+++ ..||..-...+.+-|...|.++.|.-+|..+..-.. -.-+..|
T Consensus 128 k~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 555543332221 134444444555555555555555554443322110 1125667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhh
Q 004324 510 CNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDE 589 (761)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 589 (761)
|.-+-.+|...+.+.-|.-.--.++ +.++- ...|+.-|...|.+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI-----vhade-------------------------------L~elv~~YE~~G~f 245 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADE-------------------------------LEELINYYQDRGYF 245 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC-------------------------------CSGGGSSSSTTCCC
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc-----ccHHH-------------------------------HHHHHHHHHhCCCH
Confidence 8888888888777665544333332 12210 12366778889999
Q ss_pred hHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 590 KRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 590 ~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
++-..+++ ++++-.+.+.+.-|+.+|++.
T Consensus 246 ~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 98888888 777878888899999999874
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.83 E-value=34 Score=27.24 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 187 ADYMGKER-KFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (761)
Q Consensus 187 i~~~~~~g-~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~ 264 (761)
...+.+.. +.=+.++-++.+...++.|++....+.+.+|- |-+++.-|+++|+-.+.+ +.+....|..++.-+
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcR---RvND~alAVR~lE~iK~K--~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR---RLNDFASAVRILEVVKDK--AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHHH
Confidence 33343444 45577788888888889999999999999998 799999999999999875 444455677766543
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.51 E-value=13 Score=31.24 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.++.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33444444444556666666666666666666666666666666554444444455444
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.34 E-value=34 Score=27.13 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
...+.++|..+-+|+...+ - ...+--.-+..+...|++.+|..+.+.+. .||...|-+|-.+- .|..+
T Consensus 19 G~H~HqEA~tIAdwL~~~~-~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~r-----lGl~s 86 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKG-E--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYR-----LGLGS 86 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHH-----HTCHH
T ss_pred cchHHHHHHHHHHHHHhCC-c--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHh-----cccHH
Confidence 4557899999999999988 2 34443444566789999999999887665 69999998887664 59999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHN 258 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~ 258 (761)
++..-+..+... -.|....|.
T Consensus 87 ~le~rL~~la~s--g~p~~q~Fa 107 (116)
T 2p58_C 87 ALESRLNRLARS--QDPRIQTFV 107 (116)
T ss_dssp HHHHHHHHHTTC--CCHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHH
Confidence 998888888765 345555443
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.03 E-value=1.6e+02 Score=33.92 Aligned_cols=252 Identities=11% Similarity=0.042 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCC--CCC---HHH--HHHHHHHHHhcCC
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF--EEG---KEV--LLSVLRVCAKEGD 347 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~--~p~---~~~--~~~ll~~~~~~g~ 347 (761)
+.+++..++..-...+...+..+-..-+.+.+....|...++..++.......- .-+ ..+ -.++--+.+-.|.
T Consensus 389 ~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 389 NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 555666655544332212345555555555566566655667777766554321 001 111 1222222222332
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHH-HH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHH
Q 004324 348 -VEDAEKTWLRLLESDNGIPTPA-FV--YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE--LLCKAEETELT 421 (761)
Q Consensus 348 -~~~a~~~~~~m~~~g~~~~~~~-~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~A 421 (761)
-+++.+.+..+....- .... .. +|-..|+-.|+.+....++..+.+.. +......+.- |+...|+.+.+
T Consensus 469 ~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 469 ANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp CCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGG
T ss_pred CCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHH
Confidence 2345555555554321 1111 22 22333445677777777777766541 3333333444 44467888888
Q ss_pred HHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 422 ESLMKEFVETGMKPLMPSYI---NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 422 ~~l~~~m~~~g~~pd~~t~~---~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
..+.+.+.... .|- .-|. ++.-+|+..|+.....+++..+......++.-...+.-++...|+.+.+.++++.+.
T Consensus 544 ~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 544 DDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 88888887632 222 2232 344567788898888888888876433344433333445555788788888888777
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 004324 499 SDQTIGVNTRSCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (761)
Q Consensus 499 ~~g~~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (761)
+.+ .|.+.--.++.-|....|.. .+|+.++..+..
T Consensus 622 ~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 622 KSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred hcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 764 45555555555566666664 678889999873
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.72 E-value=24 Score=42.41 Aligned_cols=124 Identities=11% Similarity=-0.016 Sum_probs=76.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR------------------- 468 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------- 468 (761)
++..+.+.+..+.|.++... +.-+...--.+..+|..+|++++|.+.|.+...++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44555566666655554332 222333334455566677777777777766533221
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 469 ----PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNT--RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 469 ----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.-..-|..++..|-+.|.++.+.++-....+...- .++. ..|..+..++...|++++|...+-.+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 11234677788888888888888777765543201 1111 25788889999999999998888877643
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.09 E-value=1.1e+02 Score=30.60 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=17.4
Q ss_pred HHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 377 YAKIGEFMKSLEIF----REMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 377 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
+.+.|+...|-++- +-..+.++++|..+..-|+..+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34445544443332 333444555555554445444443
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.47 E-value=32 Score=27.18 Aligned_cols=90 Identities=10% Similarity=0.009 Sum_probs=67.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
...+.++|..+-+|+...+ - ...+--.-+..+...|++.+|..+.+.+. .||...|-+|-.. |.|..+
T Consensus 18 G~H~HqEA~tIAdwL~~~~-~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~-----rlGl~s 85 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLG-Q--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW-----HLGLGA 85 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH-----HTTCHH
T ss_pred cchHHHHHHHHHHHHHhCC-c--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH-----hcccHH
Confidence 4557899999999999988 2 34443444566789999999999877664 6999999888665 469999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
++..-+..+... -.|....|..
T Consensus 86 ~le~rL~~la~s--g~p~~q~Fa~ 107 (115)
T 2uwj_G 86 ALDRRLAGLGGS--SDPALADFAA 107 (115)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHHH
Confidence 999988888775 3555555443
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.73 E-value=37 Score=30.99 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 550 (761)
.|-..++.+ .++...++.++|..|..+| |.-. ..-|......+...|++.+|.++|+.-++++-.|-..+...+..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~ 158 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKG-IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSN 158 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 444444444 2455778888999998887 4433 55677777778888999999999999888887776555444433
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.54 E-value=47 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+.+|..+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444555555555444332 245555544432 2445555555554444433
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.90 E-value=1.4e+02 Score=30.56 Aligned_cols=164 Identities=9% Similarity=0.013 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHH--
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGI---PTPAFVYKMEAYAKIG-EFMKSLEIFREMQERLGSASVPAY-- 405 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~-- 405 (761)
.....|...|.+.|+.++..+++.....-= .-+ ....-..||+.+.... ..+.-.++..+..+..-. .-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345567777788888777777776543321 001 1223445666666542 333334444433321000 11222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHH
Q 004324 406 ----HKIIELLCKAEETELTESLMKEFVETGMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTI 473 (761)
Q Consensus 406 ----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~ 473 (761)
.-++.-|...|++.+|.+++..+.+.--..| ...|..-+.+|...+++.++...+..... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1466777788888888877777776311111 33455566677777777777777776653 22233332
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHHHHh
Q 004324 474 YGIY----LESLK-NAGNIEKAEEIFNHM 497 (761)
Q Consensus 474 ~~~l----i~~~~-~~g~~~~A~~l~~~m 497 (761)
-..+ ...+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2221 22333 567777777776654
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.49 E-value=61 Score=27.36 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=55.8
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 187 ADYMGKER-KFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (761)
Q Consensus 187 i~~~~~~g-~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~ 264 (761)
...+.+.. +.=+.++-++.+...++.|++....+.+.+|- |-+++.-|+.+|+-.+.+ +.+....|..+|.-+
T Consensus 59 ~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcR---RvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 59 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR---RLNDFASAVRILEVVKDK--AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHHH
Confidence 33343333 44567777788888889999999999999998 799999999999999885 555555677776543
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.66 E-value=81 Score=27.71 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+-.+|.+.|++++|+.+++.+..
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc
Confidence 34455555555555555554433
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.23 E-value=63 Score=38.71 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------------
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP---------------- 435 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---------------- 435 (761)
.++..+.+.+..+-|.++..-. +-+...--.+..+|...|++++|.+.|.+.-. |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4566677777777776654332 22444434555677888999999999866421 1111
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 004324 436 -------LMPSYINLTNMYLNLGMHDRLHLAFSECLE-KC--RPNR--TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (761)
Q Consensus 436 -------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~--~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 503 (761)
-..=|.-++..+.+.+.++.+.++-...++ .. .++. ..|..+.+++...|++++|...+-.+.... .
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-L 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-S
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-H
Confidence 112366778888888999988887776665 21 1221 268899999999999999999999988765 3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 504 GVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 504 ~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
-......||..+|..|..+.-.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhh
Confidence 4567788888888887765433
No 258
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.05 E-value=84 Score=27.17 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHHHHHhhcCCccchhhHHHHHHhhhccc-----CCcchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004324 114 AKLAWLCKELPSHKGGTLVRILNAQKKWL-----RQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188 (761)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~-----~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 188 (761)
.-|.|+-..-|.... .+..+|...-..+ =.|..-|+-+-+.-....+.+..+|..|..+|.-.--...|..-..
T Consensus 31 ~YI~W~e~~~P~g~~-~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~ 109 (152)
T 4a1g_A 31 RYIQWVEENFPENKE-YLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAG 109 (152)
T ss_dssp HHHHHHHTTCSSCTH-HHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCCch-hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 567887766554432 2444444321111 1123333333111122234578888888888744445667777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC
Q 004324 189 YMGKERKFAKCRDIFDDIINQGRVP 213 (761)
Q Consensus 189 ~~~~~g~~~~A~~~f~~m~~~g~~p 213 (761)
.+...|++.+|.++|+.=.+++-.|
T Consensus 110 ~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 110 HLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 8888888888888888877776665
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=58.67 E-value=45 Score=26.39 Aligned_cols=52 Identities=12% Similarity=-0.053 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34555566666655544432 355555554432 35555555555555555443
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.35 E-value=1.5e+02 Score=29.28 Aligned_cols=131 Identities=11% Similarity=-0.098 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVE-DAEKTWLRLL----ESD--NGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
-|.-+.+...+.+++++.....-++..+.....-+ .=.++.+.+. +.| ..-+......+...|.+.|++.+|.
T Consensus 75 La~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 75 LIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 33445566667788888887777777766543222 1122333333 222 1236677888888999999999988
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKA---EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
..|-.-.. -|...+..++--+... |...++-- +.--++ -.|...+++..|..+|+...
T Consensus 155 ~H~i~~~~----~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 155 RYFMLGTH----DSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTSCH----HHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhCCC----ccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 87742111 1345555555544444 44433211 111112 22445677777777777654
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.70 E-value=1.8e+02 Score=30.25 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH----hc
Q 004324 346 GDVEDAEKTWLRLLES-----DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-RLGSASVPAYHKIIELLC----KA 415 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~----~~ 415 (761)
|+++.|.+.+-.+.+. +..........++..+.+.|+++...+.+..+.. +|..+.. ...++.-+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 5677777766555542 2334567788899999999999999888876653 3433333 334444332 23
Q ss_pred CCHHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHH
Q 004324 416 EETELT--ESLMKEFVE--TG-MKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN---RTIYGIYLESL 481 (761)
Q Consensus 416 g~~~~A--~~l~~~m~~--~g-~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~---~~~~~~li~~~ 481 (761)
...+.. ..+...... .| +-. .......|...|...|++.+|..++..+.. +.... +..|..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 111111111 11 111 123446788899999999999999999874 32222 34677788999
Q ss_pred HhcCCHHHHHHHHHHhhh----CCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 482 KNAGNIEKAEEIFNHMHS----DQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~----~g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+++..|..++++... .. ..|+ ..-|..++..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998743 21 2222 24567777888899999999999988874
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.50 E-value=1.4e+02 Score=28.69 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.+.|.+++|++....-++.. +-|...-..++.-+|-.|+|+.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556777778777777777764 55666667777777888888888777777765
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=54.88 E-value=70 Score=28.12 Aligned_cols=124 Identities=8% Similarity=-0.062 Sum_probs=62.1
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 004324 397 LGSASVPAY--HKIIELLCKAEETELTESLMKEFVET-GMKPL-------MPSYINLTNMYLNLGMHDRLHLAFSECLE- 465 (761)
Q Consensus 397 g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~- 465 (761)
|+.|.-..| -.-+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...+++..|...|++.++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444443333 33456677788888887777765541 22333 23556677777888888888888887653
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 466 --KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 466 --~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+..+..++.++- ....... ... ..++...---+-.+|.+.|++++|+.+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 2222222222110 0000000 000 11222333346778899999999999988654
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.01 E-value=99 Score=32.16 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSA--SVPAYHKIIELLCKAEETELTESLMKEF 428 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m 428 (761)
++..+...|.+.|++++|.+.|.++...-..+ -+..|-.+|..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44556667777777777777777666542221 1233444455555555555555555444
No 265
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=47.30 E-value=40 Score=30.83 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHhhcCCceeEee---cCcEEEEEEeCCCHHHHHHhhcccc
Q 004324 671 VSSEGIALVFKTLKARSLDCRVKK---KGRVFWIGFLGSNSTLFWKLIEPYV 719 (761)
Q Consensus 671 g~~~e~~~l~~~m~~~gl~~~~~~---~~~~~~i~i~~~~~~~~~~li~~~~ 719 (761)
.+.+-+..+...|.+.||..++.. .+..|++.|++.+...|.+.|.+..
T Consensus 130 ~s~~ll~~v~~lL~~lGI~s~i~~~~~~~~~y~L~Is~~~~~~F~~~IGf~~ 181 (199)
T 2vs7_A 130 KNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSH 181 (199)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHHHHCCCeEEEEEecCCCCeEEEEECchHHHHHHHHcCCCC
Confidence 455555666666689999999864 4568999999999999999995443
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.29 E-value=46 Score=28.85 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWME 546 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 546 (761)
+++.++|..|..+| |.- -..-|......+...|++.+|.++|+.-++++-.|-..+..
T Consensus 82 ~dp~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 82 SDLHQFFEFLYNHG-IGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp SCHHHHHHHHHTTT-TTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 44889999999988 543 35677777888889999999999999999888777655433
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.19 E-value=54 Score=28.84 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
+++.++|..|..+| |.- -..-|......+...|++.+|.++|+.-++++-.|...+...+
T Consensus 77 ~~p~~if~~L~~~~-IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQG-IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44778999999988 544 3567777778888999999999999999998877776553333
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.59 E-value=2.3e+02 Score=29.30 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
+...+...|.+.|+++.|.+.+.++... +..--...+-.+|..+...+++..|...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5567788888888888888888888764 223335667777888888888888888887764
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.00 E-value=1.3e+02 Score=25.22 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
|+..|--.+.-++++... ..++..++++..+.+ | ....+--|.-|+.+.|++++|.++.+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344443334444444433 234555555555443 2 12334444455666666666666666665
No 270
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A {Thermoproteus}
Probab=45.77 E-value=13 Score=34.69 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeCCCHHHHHHhhccccchhhhhcccCCCc
Q 004324 671 VSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEGS 732 (761)
Q Consensus 671 g~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~~~~~~~~~li~~~~~~~m~~~~~~~~~ 732 (761)
...+-+..+.+.|++.||.+++...++.|+++|++.... ++.+-+.-|....++.+.++
T Consensus 151 ~s~e~a~~l~~lL~~fGI~aki~~rk~~y~VyIk~~e~~---~l~~~l~~~~~~~~~~~~~~ 209 (216)
T 2dch_X 151 KSKELRDWIAQTLNDLGIRASRADKSDGYEVHIDGVEAW---RLVPHLQNPTHLERAQSVKD 209 (216)
T ss_dssp SCHHHHHHHHHHHHHHTCCCEEEEETTEEEEEEETHHHH---TTGGGCCCHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeccCcEEEEEeChHHH---HHHHHHcCCchHHHHHHHHh
Confidence 466778888888999999999999899999999975543 44443456666666655554
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=45.04 E-value=57 Score=31.28 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGVNTRSCNIILSAY 517 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~p~~~t~~~li~~~ 517 (761)
..+.|.+++++.....-++..+-|...-..|+..||-.|+++.|.+-++...+.. ...|-..+|..+|.+=
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 3455666666666666665556666677777777777777777766666655532 0122233555555443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.53 E-value=98 Score=28.18 Aligned_cols=54 Identities=6% Similarity=0.065 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP 213 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p 213 (761)
...+..+|..|..+|.-.--...|......+...|++.+|.++|+.=.+++-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 557777888887777334456667777777777788888887777777765555
No 273
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=42.05 E-value=1.6e+02 Score=24.83 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDV---EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
|+..|--....++.+..+. ..+..+++++.+.+..-....+--|.-++.|.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444333333344443332 23455555555444211223333344555555555555555555544
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.51 E-value=1.5e+02 Score=24.62 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~~~~~ 551 (761)
.+.++.=|...|+.++|.+.++++.... + -..+...++..++-+.+. .+...+++..+...|+-...+....+..+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-c-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4566777777888888888888875322 2 134555666666666542 45677778777766654444443334443
Q ss_pred H
Q 004324 552 L 552 (761)
Q Consensus 552 ~ 552 (761)
+
T Consensus 88 ~ 88 (129)
T 2nsz_A 88 Y 88 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.48 E-value=29 Score=32.36 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHh
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY--HKIIELLCK 414 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~ 414 (761)
|...++.|+.+.+..+++.+.+.|..++... ..+.+...+..|+.+ +++.+.+.|..++.... .+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4455566666666666665555544332211 112233344455543 33334445544432211 123333445
Q ss_pred cCCHHHHHHHHH
Q 004324 415 AEETELTESLMK 426 (761)
Q Consensus 415 ~g~~~~A~~l~~ 426 (761)
.|+.+-...+++
T Consensus 89 ~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 89 HRSPTCLRALLD 100 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 566554444443
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.49 E-value=13 Score=34.78 Aligned_cols=178 Identities=10% Similarity=-0.010 Sum_probs=76.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA---FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY--HKIIEL 411 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~ 411 (761)
+.+...++.|+.+-+..++ +.|..++... ..+.+...+..|+.+ +++.+.+.|..++.... .+.+..
T Consensus 44 t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHL 115 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 4566667777776554444 4443322111 112344445556654 33444455554443211 123344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHhcC
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLM---PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT---IYGIYLESLKNAG 485 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~---~~~~li~~~~~~g 485 (761)
.+..|..+ +++.+.+.|..++. .-.+.|..+..+ +......+++... +..++.. .-.+.+...+..|
T Consensus 116 A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~~~--~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 116 AAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLLTF--NVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHHHT--TCCTTCCCTTTCCCHHHHHHHHT
T ss_pred HHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHHHhc--CCCcchhhccCCCcHHHHHHHcC
Confidence 45556654 44445555655432 122333333333 3322233333222 2222111 1123445556677
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTR---SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+.+-+..+++. | ..++.. -. +-+....+.|+.+-+.-+++...+
T Consensus 189 ~~~~v~~Ll~~----g-~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 189 NTTVISLLLEA----G-ANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp CHHHHHHHHHH----T-CCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHc----C-CCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 77665555544 3 222211 11 224444666777666666555443
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.38 E-value=13 Score=35.72 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=7.6
Q ss_pred HHHHHHhcCChhHHHHH
Q 004324 186 LADYMGKERKFAKCRDI 202 (761)
Q Consensus 186 li~~~~~~g~~~~A~~~ 202 (761)
.+...++.|+++....+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33444455555443333
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.17 E-value=65 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS 214 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd 214 (761)
+.+..+|..|..+|.-.--...|..-...+...|++.+|.++|..=.+.+..|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 335666777766663334455566666666666777777777666666655543
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.24 E-value=50 Score=32.59 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCccChHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 550 (761)
..+.++.=|...|+.++|.+.++++..-. +. ..+...++..++-+.++ .+...+++..+...|+-...+..+.+..
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGG-GH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCc-ch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34578888999999999999999986432 22 34566677777776543 4667799999998777555554444544
Q ss_pred HHhh
Q 004324 551 VLSL 554 (761)
Q Consensus 551 ~~~l 554 (761)
++..
T Consensus 246 vl~~ 249 (307)
T 2zu6_B 246 IYNE 249 (307)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 280
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=38.22 E-value=57 Score=24.33 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeC
Q 004324 671 VSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLG 705 (761)
Q Consensus 671 g~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~ 705 (761)
++.+.|..+...|...|+.+.+...+..||+.+-.
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGp 52 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGA 52 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECC
Confidence 36799999999999889999998888888887643
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.95 E-value=20 Score=34.43 Aligned_cols=176 Identities=10% Similarity=-0.027 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP--AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP---AYHKIIEL 411 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~ 411 (761)
+.+...+..|+.+-+.. +.+.|..++.. ...+.+...+..|..+ +++.+.+.|..++.. .++ .+..
T Consensus 41 t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~ 111 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVEL----LLRHGADPVLRKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFME 111 (285)
T ss_dssp CHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHH
T ss_pred cHHHHHHHcCCHHHHHH----HHHcCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHH
Confidence 45556666777654443 34445443321 1112233344555544 444444555544322 122 2333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPS------------YINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYL 478 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t------------~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li 478 (761)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.... -...+..-.+.|
T Consensus 112 A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l- 186 (285)
T 1wdy_A 112 AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL- 186 (285)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-
T ss_pred HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-
Confidence 44556544 4445555555443210 01234444556666655555543111 011122222222
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH--HHHHHHHHHhCCCHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS--CNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t--~~~li~~~~~~g~~~~A~ 527 (761)
...+..|......++++.+.+.| ..++... -.+.+...++.|+.+-+.
T Consensus 187 ~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 187 IHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 23334555444445555555555 3333211 112233344556654433
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.75 E-value=1.5e+02 Score=25.58 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~~~~~ 551 (761)
.+.+|.=|...|+.++|.+.++++.... + -..+...++..++-+.+. .+.+.+++..+...|+-....+...+..+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3556677777777777777777774321 1 124455566666665432 45566777777766654433333333333
Q ss_pred H
Q 004324 552 L 552 (761)
Q Consensus 552 ~ 552 (761)
+
T Consensus 90 l 90 (152)
T 2ion_A 90 Y 90 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 283
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.13 E-value=4.9e+02 Score=30.01 Aligned_cols=154 Identities=8% Similarity=-0.045 Sum_probs=76.7
Q ss_pred HHHHHHHcCC---hHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 373 KMEAYAKIGE---FMKSLEIFREMQER----LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 373 li~~~~~~g~---~~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
++...|+.|. .++|.+.|++.... .++||.... +...-.+.|..++-..+++...... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~--vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST--IYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHH--HHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 3444555554 34566666665432 245554322 2222334555555555555555532 3334455667
Q ss_pred HHHhcCCHHHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH----hhhCCCCCCCHHHHHHHHHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAG-NIEKAEEIFNH----MHSDQTIGVNTRSCNIILSAYL 518 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~----m~~~g~~~p~~~t~~~li~~~~ 518 (761)
+++...+.+...++++.... . +++ ..... ++.+.+... ..+.|.+.+.+ +.++ +..+..++..+|.+..
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~--~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRK-QDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQD--YGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTS--SSSCCCCHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCch-hhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHHHH
Confidence 77666777777777666654 1 222 12222 233333322 23445555543 2222 3334456677777777
Q ss_pred hCCCHHHHHHHHHHHHH
Q 004324 519 SSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (761)
..-.-++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 66655555555555553
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.54 E-value=95 Score=28.80 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP 213 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p 213 (761)
.+.+..+|..|..+|.-.--...|......|...|++.+|.++|+.=.+++-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 356677777777777434456667777777777777777777777776665555
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.81 E-value=1.1e+02 Score=25.63 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMKP 435 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 435 (761)
.+.++.-|...|+.++|.+.++++...... ..+...++..++-+.+. .+....++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 355677777777777777777777422111 23344455555555432 355666676666666443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.10 E-value=2.2e+02 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+...-...+..+.+.|+.++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444455555566666666655444
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.86 E-value=3.8e+02 Score=26.89 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMKPLMP 438 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ 438 (761)
.+.+|.=|...|+.++|.+.++++...... ..+...++..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 467888888999999999999888542221 23445566666665433 455777777777777654433
No 288
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.07 E-value=2.3e+02 Score=24.15 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+..+--.+.-++++..+ ..++..++++....+ +.+. ...-.|.-|+.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444455555543 335566666655543 1122 2333444566677777777777777764
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.47 E-value=67 Score=29.79 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
+++.++|..|..+| |.- -..-|......+...|++.+|.++|+.-++++-.|-..+...+.
T Consensus 131 ~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~ 192 (223)
T 4aez_C 131 DEPVELFSFLAHHH-IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQ 192 (223)
T ss_dssp SCHHHHHHHHHHTT-CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 57778999999988 544 35677777888889999999999999999888777655544433
No 290
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.62 E-value=43 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCH
Q 004324 485 GNIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
-+++.|...|.++...|.|+|+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 37889999999888877787764
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.53 E-value=18 Score=33.82 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC
Q 004324 188 DYMGKERKFAKCRDIFDDIINQGR 211 (761)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~m~~~g~ 211 (761)
...++.|+++.+..+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334555666666666655555543
No 292
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.11 E-value=2.6e+02 Score=23.83 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDV---EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
|+..+--....++.+..+. .++..+++++.+.+..-.....-.|.-+|.|.|++++|++..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444433 34455555555543221222222344455566666666665555554
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.95 E-value=3.3e+02 Score=24.98 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--H-----HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004324 313 KERISLLKKEMQQAGFEEGKE--V-----LLSVLRVCAKEGDVEDAEKTWLRLLES 361 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~--~-----~~~ll~~~~~~g~~~~a~~~~~~m~~~ 361 (761)
++.|+.+|+.+.+.--.++.. . --..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 366666666665543221111 0 012334455666666666666655443
No 294
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.05 E-value=3.4e+02 Score=24.56 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=27.6
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 373 KMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 373 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
+|+++-| -.+.+.|+-.+-+|.+.| .|..+.-..++.+.-..|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4555554 367777888888888877 665555555555555544
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.04 E-value=94 Score=26.88 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMKP 435 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 435 (761)
.+.+|.-|...|+.++|.+.++++...... ..+.+.++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 455677777777777777777777432111 23344455555555322 345666666666665443
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.81 E-value=4.7e+02 Score=26.16 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCccChHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 550 (761)
..+.+|.=|...|+.++|.+.++++..-. +. ..+...++..++-+.++ .+...+++..+...|+-...++...+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~-fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT-CH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc-ch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45788899999999999999999997432 22 24556677777776543 4678899999998787555555455555
Q ss_pred HHhh
Q 004324 551 VLSL 554 (761)
Q Consensus 551 ~~~l 554 (761)
++..
T Consensus 297 vl~~ 300 (358)
T 3eiq_C 297 IYNE 300 (358)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.30 E-value=3.3e+02 Score=24.19 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
+|..+-...+.++.+.|..+....+. .+... ++..+-...+.++++.|.. ++...+.++... +|...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHH
Confidence 45555555566666666533333333 33322 3455555556666666653 233333333322 4555555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
.++.+.+..+ +...+..+.+ .++...-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.|. .+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-hh
Confidence 6666655532 2223333332 344444455555555555432 2222222221 3444555555555555554 33
Q ss_pred HHHHHHHhhh
Q 004324 490 AEEIFNHMHS 499 (761)
Q Consensus 490 A~~l~~~m~~ 499 (761)
+...+..+..
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 298
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.64 E-value=54 Score=29.35 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=42.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHH
Q 004324 191 GKERKFAKCRDIFDDIINQGRV-PS-EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL---HNSLFRALV 265 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~-pd-~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t---~~~ll~~~~ 265 (761)
++.|+++....++.. +.. .+ ..-++.|..+.. .|+.+.-.++.+-+.+. |..++... .+.|..++.
T Consensus 14 a~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~----~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 14 AMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLR----NNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTT----CSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHH
T ss_pred HHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHH----cCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Confidence 466777665555443 211 11 122344444443 66666556666666665 66665431 122222222
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHcCCCcC
Q 004324 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294 (761)
Q Consensus 266 ~~~g~~~~g~~~~A~~~~~~m~~~~~~p~ 294 (761)
... .......++.+.+++.|..++
T Consensus 85 ~~~-----~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 85 GGG-----NDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HCT-----TCHHHHHHHHHHHHHTTCCSS
T ss_pred cCC-----cchhhHHHHHHHHHHCCCCCC
Confidence 211 133444455555666665543
No 299
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.48 E-value=75 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHhhcCCceeEeecCcEEEEEE
Q 004324 672 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGF 703 (761)
Q Consensus 672 ~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i 703 (761)
+.+.|..+...|...|+.+.+...+..||+.+
T Consensus 19 ~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~v 50 (81)
T 1uta_A 19 GAEQAETVRAQLAFEGFDSKITTNNGWNRVVI 50 (81)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECSSSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEE
Confidence 67899999999999999999988777899887
No 300
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.42 E-value=58 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HcC
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRAL-VSK 267 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~-~~~ 267 (761)
.++|.+.|.+|.+..++.|+ .||.-++..+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDST-WSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCC
Confidence 36899999999888666555 7899999888 654
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.72 E-value=4.2e+02 Score=24.66 Aligned_cols=45 Identities=7% Similarity=-0.116 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-.-+..+.+++... ++...-...+..+.+.|+.++|.++|=+...
T Consensus 75 ~~L~~~L~~~l~~~----~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 75 EAISSKLSQSILSS----NEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHTC----SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 33444555555332 3566677778889999999999999887764
No 302
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.52 E-value=6e+02 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
-..++.+++...+.....++++....
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 34445555555555544444444443
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.83 E-value=48 Score=31.33 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=16.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIP 366 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~ 366 (761)
|...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3444556666666666666655554443
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.69 E-value=4.3e+02 Score=24.07 Aligned_cols=45 Identities=13% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 372 YKMEAYAKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 372 ~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
-+|+++-|+ .+.+.|+-.+-+|.+.|-.|..+.-..++-+.-..|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356666553 678888888888888887776666666666555444
No 305
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=22.58 E-value=0.21 Score=52.22 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+..||--+-.+|...+++..|.-.--.++-. || -...|+.-|-..|.+++...+++.-...-......|+-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4455666666666666655554333222221 11 122355567777777777777777664345677888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
|++- ++++-++-++..-.+ + |. --+|.+|.+.-.|.++.-++..
T Consensus 273 YsKY-~PeKlmEHlklf~sr--i--Ni---pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR--V--NI---PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS--S--CC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHh--c--cH---HHHHHHHHHHhhHHHHHHHHhc
Confidence 8875 455544444433222 1 11 2458889999999998877764
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.58 E-value=3.2e+02 Score=24.12 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 004324 473 IYGIYLE-SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (761)
Q Consensus 473 ~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~ 551 (761)
-|..|+. .+--.|.+..|+-++...-. ....-|..| +|-+..++..|...++.+++..+.-+|+.=..+.+.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT-----~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT-----CTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB-----HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 4544443 34457889888877654321 123334333 477899999999999999977776666531111111
Q ss_pred HhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch
Q 004324 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (761)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~ 605 (761)
-.++.-.+..++.+...|.+.|+.++|...+. ++..|--+
T Consensus 107 --------------fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 107 --------------FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp --------------SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred --------------eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 11122237788888888999999999998877 56555433
No 307
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.09 E-value=6.3e+02 Score=25.62 Aligned_cols=89 Identities=13% Similarity=-0.016 Sum_probs=52.8
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHH----
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYK---- 373 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l---- 373 (761)
..|...|++.+|..++.++.+.=-..| ..+|..-+..|...+++.++...+...... .+.++......+
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQS 186 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHh
Confidence 556678888888888877766411111 234556667777888888888777666543 121233222211
Q ss_pred HHHHH-HcCChHHHHHHHHHH
Q 004324 374 MEAYA-KIGEFMKSLEIFREM 393 (761)
Q Consensus 374 i~~~~-~~g~~~~A~~~~~~m 393 (761)
.-.+. ..+++..|...|-+.
T Consensus 187 Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 187 GILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred hHHHHHhccCHHHHHHHHHHH
Confidence 22344 567777777777665
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.92 E-value=23 Score=32.86 Aligned_cols=9 Identities=0% Similarity=0.239 Sum_probs=3.7
Q ss_pred HHHhcCChh
Q 004324 189 YMGKERKFA 197 (761)
Q Consensus 189 ~~~~~g~~~ 197 (761)
..++.|+++
T Consensus 48 ~A~~~~~~~ 56 (240)
T 3eu9_A 48 WAAINNRID 56 (240)
T ss_dssp HHHHTTCHH
T ss_pred HHHHhCCHH
Confidence 334444443
No 309
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.95 E-value=9.8e+02 Score=27.42 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 409 IELLCKAEE---TELTESLMKEFVETG----MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 409 i~~~~~~g~---~~~A~~l~~~m~~~g----~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
+...|..|. .++|.+.|+.....+ +.||... .+...-.+.|..++-..+++.... ..+..--..++.++
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~--~~~~~ek~~ll~aL 768 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQ--AQLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHH--CCSHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHHHh
Confidence 444555554 456777777766532 5566432 122222345665555555555553 34455566778888
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 482 KNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
+...+.+...++++.......+++.
T Consensus 769 ~~~~d~~~l~~~L~~~l~~~~ir~q 793 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLNPDLIRKQ 793 (909)
T ss_dssp TTCCCHHHHHHHHHHTTCTTTSCGG
T ss_pred CCCCCHHHHHHHHHHHhCCCCCchh
Confidence 8788888888888777654434443
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.83 E-value=3.5e+02 Score=24.43 Aligned_cols=44 Identities=11% Similarity=-0.055 Sum_probs=30.3
Q ss_pred HHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 373 KMEAYAKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 373 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
+|+++-|+ .+.+.|+-.+-+|.+.|-.|..+.-..++-+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 56666553 788888888888888887776665555655554444
No 311
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=20.64 E-value=1.7e+02 Score=25.42 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=53.3
Q ss_pred chhhhhhccCccceeeeeeeCCcccCCCcEEEEecc-CHHHHHHHHHHHhhcCCceeEeecCcEEEEEEeCCCHHHHHHh
Q 004324 636 IPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKV-SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 714 (761)
Q Consensus 636 ~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g-~~~e~~~l~~~m~~~gl~~~~~~~~~~~~i~i~~~~~~~~~~l 714 (761)
..+|+.+|+.+..+-|.-.-.+....-...+--.+| .-+.|.++++.++..+++.....+|.. +.++|.+-+-+.+.
T Consensus 66 ~~kl~KRgid~k~ld~~~~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKVqa~IQGd~--vRVtgKkrDDLQ~v 143 (163)
T 1in0_A 66 IGSCIKRGIEHSSLDIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQTQIQGEQ--VRVTGKSRDDLQAV 143 (163)
T ss_dssp HHHHHHTTCCGGGEECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEEEEEETTE--EEEEESCHHHHHHH
T ss_pred HHHHHHcCCCchhcccCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcceeEecCcE--EEEecCCHHHHHHH
Confidence 347888899988888733221111111122333458 889999999999999999888888888 55778877666555
Q ss_pred h
Q 004324 715 I 715 (761)
Q Consensus 715 i 715 (761)
|
T Consensus 144 i 144 (163)
T 1in0_A 144 I 144 (163)
T ss_dssp H
T ss_pred H
Confidence 5
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.46 E-value=76 Score=28.33 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=56.1
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE---MTFHILIVAYLSAPV 230 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~---~~~~~li~~~~~~~~ 230 (761)
.++.|+++....++. .+....+.....+.+...+..|..+.-.++.+-+.+.|..+|. .-++.|..++.. .
T Consensus 13 Aa~~g~~~~~~~l~~----~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~--~ 86 (186)
T 3t8k_A 13 AAMLGTYEDFLELFE----KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG--G 86 (186)
T ss_dssp HHHHSCHHHHHHHHH----HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH--C
T ss_pred HHHcCCHHHHHHHHh----cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--C
Confidence 446778776555543 3311112122335566667778777777788888888876654 345556555542 2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
........++.+.+.+. |..++..
T Consensus 87 ~~~~~~~~~iv~~Ll~~-Gadin~~ 110 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEK-GADITAL 110 (186)
T ss_dssp TTCHHHHHHHHHHHHHT-TCCSSSC
T ss_pred CcchhhHHHHHHHHHHC-CCCCCcc
Confidence 34455566777777776 7777653
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.45 E-value=36 Score=31.45 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=10.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 004324 187 ADYMGKERKFAKCRDIFDD 205 (761)
Q Consensus 187 i~~~~~~g~~~~A~~~f~~ 205 (761)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344555666665555544
Done!