Query 004327
Match_columns 761
No_of_seqs 1082 out of 2796
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.1E-43 2.4E-48 365.3 25.6 306 431-761 128-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 5.6E-43 1.2E-47 360.2 26.1 290 469-761 105-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3E-41 6.4E-46 351.9 24.5 287 470-761 166-458 (459)
4 KOG0286 G-protein beta subunit 100.0 3.8E-38 8.2E-43 315.6 34.9 291 468-761 44-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 1E-37 2.2E-42 325.5 22.6 266 431-720 188-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 1.2E-36 2.7E-41 305.9 28.1 289 470-759 38-334 (338)
7 KOG0279 G protein beta subunit 100.0 4.1E-35 8.9E-40 292.4 32.9 285 470-761 6-311 (315)
8 cd00200 WD40 WD40 domain, foun 100.0 1.5E-34 3.2E-39 299.4 38.5 284 473-761 3-289 (289)
9 KOG0315 G-protein beta subunit 100.0 6E-35 1.3E-39 286.8 29.9 268 492-761 11-286 (311)
10 KOG0266 WD40 repeat-containing 100.0 5.2E-34 1.1E-38 323.6 40.7 286 472-761 151-452 (456)
11 KOG0295 WD40 repeat-containing 100.0 1E-35 2.2E-40 305.7 23.5 290 468-761 97-404 (406)
12 KOG0285 Pleiotropic regulator 100.0 3E-35 6.6E-40 300.9 26.0 289 467-761 139-437 (460)
13 KOG0318 WD40 repeat stress pro 100.0 1.7E-33 3.6E-38 300.4 35.3 293 465-761 176-600 (603)
14 KOG0284 Polyadenylation factor 100.0 1.2E-35 2.6E-40 308.8 17.1 277 479-761 96-378 (464)
15 KOG0318 WD40 repeat stress pro 100.0 4.9E-33 1.1E-37 296.9 36.8 332 423-761 64-558 (603)
16 KOG0315 G-protein beta subunit 100.0 2.3E-33 5E-38 275.6 30.7 280 454-742 18-309 (311)
17 KOG0273 Beta-transducin family 100.0 1.2E-33 2.6E-38 298.3 28.9 283 471-761 171-480 (524)
18 KOG0273 Beta-transducin family 100.0 3.3E-33 7.2E-38 295.0 30.6 276 479-761 235-521 (524)
19 KOG0282 mRNA splicing factor [ 100.0 1.9E-34 4.1E-39 305.7 19.4 290 470-761 205-503 (503)
20 KOG0279 G protein beta subunit 100.0 7.9E-33 1.7E-37 276.1 28.8 273 431-722 29-313 (315)
21 KOG0645 WD40 repeat protein [G 100.0 5.2E-32 1.1E-36 269.2 33.7 283 469-761 4-309 (312)
22 KOG0293 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 292.6 22.3 290 466-761 211-511 (519)
23 PLN00181 protein SPA1-RELATED; 100.0 9.2E-32 2E-36 325.9 41.0 284 475-761 479-791 (793)
24 KOG0263 Transcription initiati 100.0 1.4E-32 3E-37 306.7 28.7 277 470-751 369-703 (707)
25 KOG0291 WD40-repeat-containing 100.0 1.3E-31 2.9E-36 295.6 35.4 289 468-761 296-610 (893)
26 KOG0286 G-protein beta subunit 100.0 3.8E-31 8.2E-36 265.4 31.5 277 405-720 57-343 (343)
27 KOG0263 Transcription initiati 100.0 4.7E-32 1E-36 302.5 26.7 252 423-679 383-651 (707)
28 KOG0319 WD40-repeat-containing 100.0 1.2E-31 2.6E-36 296.1 29.5 289 469-761 313-617 (775)
29 KOG0296 Angio-associated migra 100.0 4.1E-31 8.9E-36 272.0 31.0 307 429-761 75-396 (399)
30 KOG0291 WD40-repeat-containing 100.0 6.6E-30 1.4E-34 282.3 39.4 280 477-761 263-548 (893)
31 KOG0319 WD40-repeat-containing 100.0 4.3E-31 9.4E-36 291.7 27.2 302 453-761 81-575 (775)
32 KOG0306 WD40-repeat-containing 100.0 7.1E-31 1.5E-35 289.7 28.3 281 473-761 367-662 (888)
33 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.7E-35 254.5 26.1 281 470-760 8-296 (307)
34 KOG0284 Polyadenylation factor 100.0 3.9E-32 8.4E-37 282.6 15.7 268 431-721 109-379 (464)
35 KOG0281 Beta-TrCP (transducin 100.0 9.2E-32 2E-36 274.1 15.2 273 470-761 188-475 (499)
36 KOG0295 WD40 repeat-containing 100.0 1.1E-30 2.3E-35 268.8 21.9 272 426-721 116-405 (406)
37 KOG0276 Vesicle coat complex C 100.0 3.8E-30 8.3E-35 278.8 26.4 281 474-759 8-295 (794)
38 KOG1407 WD40 repeat protein [F 100.0 1.2E-29 2.6E-34 251.1 26.5 282 473-760 14-308 (313)
39 KOG0643 Translation initiation 100.0 2.4E-29 5.3E-34 249.6 28.5 281 474-760 5-314 (327)
40 KOG0296 Angio-associated migra 100.0 1.5E-29 3.3E-34 260.5 27.6 285 471-761 56-354 (399)
41 cd00200 WD40 WD40 domain, foun 100.0 2.9E-28 6.3E-33 252.2 36.6 266 431-720 22-289 (289)
42 KOG0276 Vesicle coat complex C 100.0 2.3E-29 4.9E-34 272.9 28.9 274 423-718 18-295 (794)
43 KOG0275 Conserved WD40 repeat- 100.0 8.9E-31 1.9E-35 264.6 16.5 280 477-761 211-507 (508)
44 KOG0306 WD40-repeat-containing 100.0 4.4E-29 9.6E-34 275.6 30.0 300 455-760 86-577 (888)
45 KOG0278 Serine/threonine kinas 100.0 3.1E-30 6.6E-35 253.5 18.3 278 475-760 10-294 (334)
46 KOG0266 WD40 repeat-containing 100.0 9.5E-29 2.1E-33 280.6 31.8 276 425-722 166-454 (456)
47 KOG0288 WD40 repeat protein Ti 100.0 5.9E-30 1.3E-34 266.8 17.1 283 471-761 167-459 (459)
48 KOG0292 Vesicle coat complex C 100.0 7.8E-29 1.7E-33 276.9 26.9 282 475-760 5-318 (1202)
49 KOG0285 Pleiotropic regulator 100.0 2.5E-29 5.4E-34 257.7 21.1 244 511-761 141-387 (460)
50 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-27 5.7E-32 241.0 33.1 284 469-760 4-300 (311)
51 KOG0281 Beta-TrCP (transducin 100.0 5.8E-30 1.3E-34 261.0 12.7 246 469-727 227-482 (499)
52 KOG0313 Microtubule binding pr 100.0 6.6E-28 1.4E-32 249.4 27.0 278 477-761 103-416 (423)
53 KOG0645 WD40 repeat protein [G 100.0 1.9E-27 4.1E-32 236.8 28.2 269 431-722 28-311 (312)
54 KOG0772 Uncharacterized conser 100.0 6.4E-28 1.4E-32 257.0 26.5 291 468-760 156-484 (641)
55 KOG0277 Peroxisomal targeting 100.0 3.4E-28 7.4E-33 240.0 22.4 276 483-761 12-307 (311)
56 KOG0640 mRNA cleavage stimulat 100.0 3.3E-28 7.3E-33 245.3 22.3 287 471-761 104-424 (430)
57 KOG0283 WD40 repeat-containing 100.0 6.7E-28 1.5E-32 271.5 26.6 248 469-722 256-576 (712)
58 PTZ00420 coronin; Provisional 100.0 1.5E-26 3.3E-31 264.3 37.9 249 497-745 50-318 (568)
59 KOG0268 Sof1-like rRNA process 100.0 5.5E-29 1.2E-33 255.8 15.7 280 471-761 58-343 (433)
60 KOG0265 U5 snRNP-specific prot 100.0 2.9E-27 6.3E-32 238.4 27.6 267 431-721 60-337 (338)
61 KOG0274 Cdc4 and related F-box 100.0 2.7E-27 5.9E-32 269.5 30.6 270 477-761 206-480 (537)
62 KOG0282 mRNA splicing factor [ 100.0 7.4E-29 1.6E-33 263.3 15.1 248 511-761 204-460 (503)
63 PLN00181 protein SPA1-RELATED; 100.0 3.8E-26 8.3E-31 277.0 40.3 280 427-721 492-792 (793)
64 KOG0310 Conserved WD40 repeat- 100.0 3E-27 6.5E-32 251.6 26.3 276 479-759 26-305 (487)
65 KOG0278 Serine/threonine kinas 100.0 4.6E-28 9.9E-33 238.3 18.1 252 469-727 49-302 (334)
66 KOG0973 Histone transcription 100.0 6.1E-27 1.3E-31 269.6 29.7 281 476-760 10-352 (942)
67 PTZ00421 coronin; Provisional 100.0 4.4E-26 9.5E-31 259.0 36.3 263 480-744 21-314 (493)
68 KOG0289 mRNA splicing factor [ 100.0 6E-27 1.3E-31 245.6 26.5 276 480-760 220-503 (506)
69 KOG0313 Microtubule binding pr 100.0 7.9E-27 1.7E-31 241.4 26.2 268 430-722 115-418 (423)
70 KOG0293 WD40 repeat-containing 100.0 6.5E-27 1.4E-31 243.7 23.6 283 404-723 225-514 (519)
71 KOG0305 Anaphase promoting com 100.0 2.5E-26 5.4E-31 253.3 28.8 268 484-761 182-459 (484)
72 KOG0316 Conserved WD40 repeat- 100.0 1.5E-26 3.3E-31 226.0 23.4 255 454-719 37-296 (307)
73 KOG0647 mRNA export protein (c 100.0 4.3E-26 9.4E-31 230.1 26.8 272 475-751 23-311 (347)
74 KOG0292 Vesicle coat complex C 100.0 3.1E-26 6.7E-31 256.2 28.1 271 427-722 18-321 (1202)
75 KOG0641 WD40 repeat protein [G 100.0 8.2E-25 1.8E-29 212.3 34.4 290 467-760 21-346 (350)
76 KOG0283 WD40 repeat-containing 99.9 1.3E-26 2.9E-31 261.1 25.2 245 514-761 259-574 (712)
77 KOG0275 Conserved WD40 repeat- 99.9 5.6E-27 1.2E-31 237.2 17.3 273 431-720 226-507 (508)
78 KOG0300 WD40 repeat-containing 99.9 2.6E-26 5.5E-31 232.0 21.9 289 468-761 137-474 (481)
79 KOG0274 Cdc4 and related F-box 99.9 1.2E-25 2.5E-30 256.2 29.8 243 471-727 240-487 (537)
80 KOG0308 Conserved WD40 repeat- 99.9 9.4E-27 2E-31 254.2 18.9 270 489-761 35-325 (735)
81 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.7E-31 242.1 18.0 263 432-719 189-458 (459)
82 KOG0294 WD40 repeat-containing 99.9 3.4E-25 7.3E-30 224.8 27.5 268 466-742 30-306 (362)
83 KOG0310 Conserved WD40 repeat- 99.9 7.7E-26 1.7E-30 240.9 22.3 242 475-722 64-309 (487)
84 KOG0277 Peroxisomal targeting 99.9 1.2E-25 2.5E-30 222.2 21.8 251 467-721 49-308 (311)
85 KOG1407 WD40 repeat protein [F 99.9 1E-25 2.2E-30 223.4 21.4 241 515-759 14-257 (313)
86 KOG0973 Histone transcription 99.9 1.9E-25 4E-30 257.4 27.0 252 470-725 60-358 (942)
87 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-24 1.1E-28 226.2 35.8 264 491-761 1-277 (300)
88 PTZ00421 coronin; Provisional 99.9 3.8E-24 8.2E-29 243.2 35.5 245 473-724 69-333 (493)
89 KOG1408 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 242.9 25.1 304 457-761 347-711 (1080)
90 KOG2096 WD40 repeat protein [G 99.9 1.1E-24 2.5E-29 220.7 26.3 286 471-760 78-399 (420)
91 KOG0301 Phospholipase A2-activ 99.9 9.5E-25 2.1E-29 240.2 27.0 275 470-760 5-285 (745)
92 KOG0641 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 202.4 31.9 293 422-722 36-349 (350)
93 KOG1036 Mitotic spindle checkp 99.9 2.8E-24 6E-29 218.0 26.4 269 478-753 12-294 (323)
94 KOG0299 U3 snoRNP-associated p 99.9 9.7E-25 2.1E-29 230.9 23.9 280 427-712 151-445 (479)
95 KOG1539 WD repeat protein [Gen 99.9 2.5E-23 5.4E-28 232.9 35.0 302 455-760 181-645 (910)
96 KOG0305 Anaphase promoting com 99.9 4.5E-24 9.9E-29 235.4 26.9 239 479-724 217-463 (484)
97 KOG2055 WD40 repeat protein [G 99.9 4.6E-24 1E-28 225.6 24.8 283 478-761 212-510 (514)
98 KOG0294 WD40 repeat-containing 99.9 9.3E-24 2E-28 214.4 26.1 259 494-761 4-279 (362)
99 KOG0299 U3 snoRNP-associated p 99.9 7.7E-24 1.7E-28 224.1 26.5 274 472-752 135-444 (479)
100 PTZ00420 coronin; Provisional 99.9 4.8E-23 1E-27 235.6 34.4 243 454-704 52-318 (568)
101 KOG1273 WD40 repeat protein [G 99.9 7.6E-24 1.7E-28 214.6 24.3 276 482-761 26-320 (405)
102 KOG0308 Conserved WD40 repeat- 99.9 1.8E-24 3.8E-29 236.5 21.1 316 429-761 36-391 (735)
103 KOG0643 Translation initiation 99.9 1.3E-23 2.9E-28 208.9 25.4 234 516-753 5-251 (327)
104 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-22 5.9E-27 213.0 37.6 264 472-743 24-300 (300)
105 KOG0268 Sof1-like rRNA process 99.9 8E-25 1.7E-29 225.3 15.9 282 412-725 65-348 (433)
106 KOG0639 Transducin-like enhanc 99.9 3.6E-24 7.9E-29 227.4 20.1 278 476-760 416-701 (705)
107 KOG0289 mRNA splicing factor [ 99.9 1.9E-23 4.2E-28 219.3 24.9 270 431-721 232-505 (506)
108 KOG0640 mRNA cleavage stimulat 99.9 7.9E-24 1.7E-28 213.8 20.7 288 431-722 125-426 (430)
109 KOG1332 Vesicle coat complex C 99.9 5.3E-24 1.1E-28 209.4 18.4 249 474-722 6-286 (299)
110 KOG0301 Phospholipase A2-activ 99.9 2.7E-23 5.9E-28 228.8 25.4 242 467-724 45-290 (745)
111 KOG0650 WD40 repeat nucleolar 99.9 2.3E-23 4.9E-28 225.7 23.5 290 466-760 387-732 (733)
112 KOG1446 Histone H3 (Lys4) meth 99.9 4.3E-22 9.4E-27 203.1 29.8 247 511-761 4-260 (311)
113 KOG0647 mRNA export protein (c 99.9 1.9E-22 4E-27 203.9 26.6 276 397-712 21-313 (347)
114 KOG0269 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 234.0 18.9 274 482-758 42-335 (839)
115 KOG1063 RNA polymerase II elon 99.9 2.3E-22 4.9E-27 221.5 28.6 329 429-761 205-646 (764)
116 KOG1332 Vesicle coat complex C 99.9 1.8E-23 3.9E-28 205.7 17.3 243 518-761 8-284 (299)
117 KOG0772 Uncharacterized conser 99.9 8.7E-23 1.9E-27 218.0 23.5 275 427-720 176-485 (641)
118 KOG0264 Nucleosome remodeling 99.9 7.5E-23 1.6E-27 216.9 22.8 254 470-723 115-405 (422)
119 KOG0321 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 224.2 21.5 276 484-761 54-389 (720)
120 KOG1408 WD40 repeat protein [F 99.9 9.9E-23 2.2E-27 223.7 23.0 247 476-725 456-716 (1080)
121 KOG2106 Uncharacterized conser 99.9 6.1E-21 1.3E-25 203.6 35.2 254 459-720 225-519 (626)
122 KOG0646 WD40 repeat protein [G 99.9 9E-23 2E-27 216.5 20.4 247 457-709 62-336 (476)
123 KOG1274 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 221.8 29.3 277 476-760 10-297 (933)
124 KOG0264 Nucleosome remodeling 99.9 2.8E-22 6.1E-27 212.5 22.5 242 518-761 121-402 (422)
125 KOG2445 Nuclear pore complex c 99.9 1.5E-21 3.4E-26 197.7 26.1 258 475-761 9-316 (361)
126 KOG4283 Transcription-coupled 99.9 1.3E-21 2.7E-26 196.9 25.2 283 474-760 38-362 (397)
127 KOG2106 Uncharacterized conser 99.9 3.4E-20 7.4E-25 197.9 37.2 295 452-761 176-519 (626)
128 KOG0639 Transducin-like enhanc 99.9 4.6E-22 9.9E-27 211.5 22.8 262 453-721 437-703 (705)
129 KOG0267 Microtubule severing p 99.9 2.3E-23 5.1E-28 230.0 10.2 253 491-754 4-259 (825)
130 KOG0267 Microtubule severing p 99.9 2E-23 4.4E-28 230.5 9.1 239 471-714 20-260 (825)
131 KOG1539 WD repeat protein [Gen 99.9 1.8E-20 3.8E-25 210.3 32.6 284 475-761 155-604 (910)
132 KOG1274 WD40 repeat protein [G 99.9 3.2E-21 7E-26 218.4 26.6 241 518-761 10-260 (933)
133 KOG2048 WD40 repeat protein [G 99.9 2.8E-20 6.1E-25 205.0 32.8 282 469-759 15-315 (691)
134 KOG2055 WD40 repeat protein [G 99.9 3.1E-21 6.8E-26 204.3 22.3 276 424-722 219-512 (514)
135 KOG0646 WD40 repeat protein [G 99.9 5.6E-21 1.2E-25 202.9 24.1 254 501-761 18-305 (476)
136 KOG0300 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 195.9 20.1 258 493-761 126-426 (481)
137 KOG1036 Mitotic spindle checkp 99.9 9.6E-21 2.1E-25 192.4 23.7 234 520-761 12-260 (323)
138 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4.1E-25 206.5 27.1 357 398-761 281-761 (764)
139 KOG4328 WD40 protein [Function 99.9 1.8E-20 3.8E-25 198.5 24.2 294 466-760 173-492 (498)
140 KOG1538 Uncharacterized conser 99.9 1.7E-20 3.7E-25 204.8 23.6 270 481-761 14-291 (1081)
141 KOG1034 Transcriptional repres 99.9 2.1E-20 4.5E-25 191.0 22.2 285 473-761 32-381 (385)
142 KOG0269 WD40 repeat-containing 99.9 2E-21 4.4E-26 216.4 15.4 222 457-679 111-342 (839)
143 KOG0321 WD40 repeat-containing 99.9 1.8E-20 3.9E-25 205.0 21.7 281 428-724 62-393 (720)
144 KOG2048 WD40 repeat protein [G 99.9 7.6E-19 1.6E-23 193.8 33.6 266 431-719 38-316 (691)
145 KOG4283 Transcription-coupled 99.9 5.3E-20 1.2E-24 185.2 21.5 208 519-726 41-280 (397)
146 KOG0302 Ribosome Assembly prot 99.9 5.2E-20 1.1E-24 190.8 21.6 244 475-719 147-435 (440)
147 KOG4378 Nuclear protein COP1 [ 99.9 4.7E-20 1E-24 196.2 21.5 256 482-745 37-305 (673)
148 COG2319 FOG: WD40 repeat [Gene 99.8 7.7E-18 1.7E-22 182.6 39.2 284 474-761 60-357 (466)
149 KOG0307 Vesicle coat complex C 99.8 4.4E-21 9.6E-26 222.3 13.0 274 484-760 11-324 (1049)
150 KOG0270 WD40 repeat-containing 99.8 7.4E-20 1.6E-24 193.4 20.7 236 490-727 191-454 (463)
151 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-17 3.4E-22 180.1 39.9 297 455-761 133-440 (466)
152 KOG2919 Guanine nucleotide-bin 99.8 2.7E-19 5.9E-24 182.3 23.4 268 482-754 52-361 (406)
153 KOG0307 Vesicle coat complex C 99.8 1.6E-20 3.6E-25 217.6 16.4 243 480-725 65-330 (1049)
154 KOG4378 Nuclear protein COP1 [ 99.8 2.8E-19 6.1E-24 190.4 21.6 246 453-704 54-305 (673)
155 KOG4328 WD40 protein [Function 99.8 2E-19 4.3E-24 190.6 19.9 256 506-761 171-448 (498)
156 KOG0270 WD40 repeat-containing 99.8 6.8E-19 1.5E-23 186.2 23.2 236 524-761 176-447 (463)
157 KOG0650 WD40 repeat nucleolar 99.8 3.4E-19 7.3E-24 193.7 21.4 243 513-760 392-677 (733)
158 KOG2096 WD40 repeat protein [G 99.8 6.6E-19 1.4E-23 179.1 21.7 243 515-760 80-357 (420)
159 KOG1009 Chromatin assembly com 99.8 1.3E-18 2.7E-23 182.4 24.0 296 432-759 28-368 (434)
160 KOG1273 WD40 repeat protein [G 99.8 6.2E-19 1.4E-23 179.1 21.1 273 426-723 31-323 (405)
161 KOG0302 Ribosome Assembly prot 99.8 5.9E-19 1.3E-23 183.1 21.2 241 518-760 148-435 (440)
162 KOG1445 Tumor-specific antigen 99.8 1.8E-18 3.9E-23 188.2 23.9 113 649-761 628-748 (1012)
163 KOG4227 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 178.9 21.8 284 472-761 49-385 (609)
164 PRK11028 6-phosphogluconolacto 99.8 3.1E-17 6.6E-22 179.0 32.1 266 494-761 5-302 (330)
165 PRK11028 6-phosphogluconolacto 99.8 1E-16 2.2E-21 174.8 35.7 279 459-741 15-327 (330)
166 KOG0322 G-protein beta subunit 99.8 3.7E-19 8E-24 177.1 14.6 285 471-761 6-321 (323)
167 KOG0642 Cell-cycle nuclear pro 99.8 9.7E-19 2.1E-23 189.7 16.8 254 474-732 289-572 (577)
168 KOG1188 WD40 repeat protein [G 99.8 2.5E-18 5.5E-23 176.8 18.2 266 492-761 41-344 (376)
169 KOG0303 Actin-binding protein 99.8 1.8E-17 3.9E-22 172.9 23.7 211 516-727 76-299 (472)
170 KOG0644 Uncharacterized conser 99.8 4.7E-19 1E-23 198.2 11.1 275 470-760 181-465 (1113)
171 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.6E-22 167.1 20.5 286 457-759 41-357 (370)
172 KOG1334 WD40 repeat protein [G 99.8 2.8E-18 6.1E-23 183.0 13.9 291 470-760 133-463 (559)
173 KOG1517 Guanine nucleotide bin 99.8 8E-17 1.7E-21 184.4 25.3 279 479-760 1064-1378(1387)
174 KOG0290 Conserved WD40 repeat- 99.8 1.9E-16 4E-21 159.8 24.1 241 476-719 93-362 (364)
175 KOG1310 WD40 repeat protein [G 99.8 4E-17 8.7E-22 175.9 20.1 208 471-678 42-304 (758)
176 KOG2919 Guanine nucleotide-bin 99.7 1.9E-16 4.1E-21 161.8 23.2 231 480-713 105-361 (406)
177 KOG1587 Cytoplasmic dynein int 99.7 4.3E-16 9.3E-21 176.9 27.9 258 501-761 222-514 (555)
178 KOG2445 Nuclear pore complex c 99.7 5.7E-16 1.2E-20 157.5 25.7 248 427-690 22-331 (361)
179 KOG0303 Actin-binding protein 99.7 1.1E-16 2.4E-21 167.1 19.8 204 471-679 73-296 (472)
180 KOG1240 Protein kinase contain 99.7 4.5E-16 9.8E-21 180.9 26.9 293 469-761 1038-1431(1431)
181 KOG1034 Transcriptional repres 99.7 1.4E-16 3E-21 163.2 19.4 242 477-722 87-383 (385)
182 KOG1963 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 173.1 28.4 282 476-761 202-536 (792)
183 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4E-20 149.2 25.6 268 481-760 12-313 (325)
184 PRK01742 tolB translocation pr 99.7 5E-16 1.1E-20 175.6 25.1 233 500-744 183-426 (429)
185 KOG0642 Cell-cycle nuclear pro 99.7 9.3E-17 2E-21 174.5 17.2 250 426-691 302-572 (577)
186 KOG0649 WD40 repeat protein [G 99.7 1.1E-15 2.4E-20 150.8 22.9 229 523-760 12-271 (325)
187 KOG1524 WD40 repeat-containing 99.7 3.7E-16 8.1E-21 168.1 19.2 262 477-759 12-282 (737)
188 KOG1188 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 160.1 18.2 275 430-723 40-347 (376)
189 KOG1587 Cytoplasmic dynein int 99.7 1E-15 2.2E-20 173.9 22.6 246 478-724 241-518 (555)
190 KOG2139 WD40 repeat protein [G 99.7 7.6E-15 1.6E-19 152.1 25.6 276 480-759 99-427 (445)
191 KOG2110 Uncharacterized conser 99.7 3.4E-14 7.5E-19 148.0 30.4 233 479-723 5-249 (391)
192 PRK03629 tolB translocation pr 99.7 1.3E-14 2.8E-19 164.0 30.1 235 501-744 179-428 (429)
193 PRK01742 tolB translocation pr 99.7 1.8E-15 3.8E-20 171.2 22.9 233 456-703 184-426 (429)
194 KOG4497 Uncharacterized conser 99.7 1.1E-14 2.5E-19 149.0 25.9 271 480-756 49-425 (447)
195 KOG0290 Conserved WD40 repeat- 99.7 3.4E-15 7.3E-20 150.8 20.6 246 513-761 37-316 (364)
196 KOG1538 Uncharacterized conser 99.7 2.1E-15 4.6E-20 165.3 20.4 248 461-723 38-294 (1081)
197 KOG2110 Uncharacterized conser 99.7 1.8E-14 4E-19 150.0 26.3 230 521-761 5-246 (391)
198 KOG1523 Actin-related protein 99.7 8.1E-15 1.8E-19 150.0 23.0 224 477-703 8-260 (361)
199 KOG2321 WD40 repeat protein [G 99.7 9.7E-15 2.1E-19 158.7 24.9 276 477-759 49-339 (703)
200 PF02239 Cytochrom_D1: Cytochr 99.7 1E-13 2.2E-18 153.0 31.6 286 470-761 27-345 (369)
201 PRK05137 tolB translocation pr 99.7 5.1E-14 1.1E-18 159.7 29.8 234 501-744 182-433 (435)
202 PRK04922 tolB translocation pr 99.7 2.9E-14 6.2E-19 161.6 27.1 234 501-743 184-432 (433)
203 KOG1272 WD40-repeat-containing 99.7 3.9E-16 8.5E-21 166.0 11.0 262 482-755 132-401 (545)
204 KOG1963 WD40 repeat protein [G 99.6 4.5E-14 9.7E-19 160.9 27.2 274 483-760 20-319 (792)
205 KOG0771 Prolactin regulatory e 99.6 2.9E-15 6.3E-20 158.5 16.0 194 483-678 148-355 (398)
206 KOG1445 Tumor-specific antigen 99.6 3.9E-14 8.5E-19 154.8 24.2 239 487-727 587-849 (1012)
207 KOG2394 WD40 protein DMR-N9 [G 99.6 9.1E-14 2E-18 150.4 24.9 244 482-743 126-384 (636)
208 PRK02889 tolB translocation pr 99.6 1.4E-13 3E-18 155.7 27.9 235 501-744 176-425 (427)
209 KOG1007 WD repeat protein TSSC 99.6 2.6E-14 5.6E-19 144.3 19.2 216 542-760 39-286 (370)
210 KOG1517 Guanine nucleotide bin 99.6 3.1E-14 6.8E-19 163.5 21.8 268 456-724 1086-1383(1387)
211 KOG4227 WD40 repeat protein [G 99.6 7.9E-14 1.7E-18 145.3 21.7 279 428-721 66-386 (609)
212 KOG2111 Uncharacterized conser 99.6 1.4E-12 3.1E-17 133.8 30.0 232 482-723 8-257 (346)
213 KOG0771 Prolactin regulatory e 99.6 9E-14 2E-18 147.3 21.1 191 568-760 148-351 (398)
214 KOG1523 Actin-related protein 99.6 1.3E-13 2.7E-18 141.4 21.5 227 517-744 6-260 (361)
215 PF10282 Lactonase: Lactonase, 99.6 1.5E-11 3.3E-16 135.2 39.8 261 481-741 38-345 (345)
216 PRK04922 tolB translocation pr 99.6 3.5E-13 7.5E-18 152.7 27.3 221 473-702 197-432 (433)
217 KOG0644 Uncharacterized conser 99.6 3.3E-15 7.1E-20 167.8 9.8 240 470-725 223-471 (1113)
218 PRK03629 tolB translocation pr 99.6 6E-13 1.3E-17 150.5 28.0 220 475-703 194-428 (429)
219 KOG1524 WD40 repeat-containing 99.6 2.5E-14 5.5E-19 154.2 15.4 206 492-718 76-282 (737)
220 TIGR02800 propeller_TolB tol-p 99.6 9.9E-13 2.1E-17 148.0 28.4 232 501-741 170-416 (417)
221 PF10282 Lactonase: Lactonase, 99.6 2.7E-11 5.9E-16 133.2 38.5 267 494-761 2-320 (345)
222 KOG2315 Predicted translation 99.6 1.6E-12 3.5E-17 142.0 27.9 267 480-761 35-388 (566)
223 PRK02889 tolB translocation pr 99.6 5.9E-13 1.3E-17 150.6 25.2 223 474-703 190-425 (427)
224 KOG1354 Serine/threonine prote 99.6 4.6E-13 9.9E-18 138.2 21.8 277 479-760 25-431 (433)
225 KOG2111 Uncharacterized conser 99.6 1.4E-12 3.1E-17 133.7 25.0 231 523-760 7-253 (346)
226 KOG3881 Uncharacterized conser 99.6 3.6E-13 7.8E-18 141.3 20.9 261 478-744 54-342 (412)
227 PRK05137 tolB translocation pr 99.5 1.6E-12 3.4E-17 147.5 28.1 222 472-703 194-433 (435)
228 KOG1009 Chromatin assembly com 99.5 6.3E-13 1.4E-17 140.0 22.5 279 421-725 68-375 (434)
229 PRK00178 tolB translocation pr 99.5 2.9E-12 6.2E-17 145.2 29.6 234 502-744 180-428 (430)
230 KOG1272 WD40-repeat-containing 99.5 1.4E-14 3.1E-19 154.2 8.6 229 522-761 130-360 (545)
231 KOG3881 Uncharacterized conser 99.5 7.2E-13 1.6E-17 139.1 21.0 237 520-761 54-318 (412)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 8.1E-13 1.8E-17 143.1 21.4 169 489-658 183-384 (636)
233 PF02239 Cytochrom_D1: Cytochr 99.5 7.5E-12 1.6E-16 138.2 29.9 263 492-761 6-300 (369)
234 KOG1409 Uncharacterized conser 99.5 8.6E-13 1.9E-17 136.4 19.2 253 467-724 12-272 (404)
235 KOG2139 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 134.7 21.5 228 522-755 99-367 (445)
236 PRK04792 tolB translocation pr 99.5 4.7E-12 1E-16 143.9 27.3 234 502-744 199-447 (448)
237 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.9E-18 149.0 13.5 215 513-727 42-308 (758)
238 KOG1240 Protein kinase contain 99.5 3.7E-12 8E-17 148.9 24.9 251 506-761 1034-1332(1431)
239 KOG4497 Uncharacterized conser 99.5 2.2E-13 4.7E-18 139.7 11.7 222 526-760 13-237 (447)
240 KOG2321 WD40 repeat protein [G 99.5 4.8E-12 1E-16 138.0 21.6 238 519-761 49-300 (703)
241 PRK00178 tolB translocation pr 99.5 3.3E-11 7.2E-16 136.5 29.1 222 473-703 192-428 (430)
242 PRK01029 tolB translocation pr 99.4 9.4E-11 2E-15 132.4 29.7 238 501-745 165-426 (428)
243 TIGR02800 propeller_TolB tol-p 99.4 5.2E-11 1.1E-15 134.1 26.9 205 543-755 170-386 (417)
244 COG2706 3-carboxymuconate cycl 99.4 6.4E-10 1.4E-14 116.8 32.7 266 477-742 37-345 (346)
245 TIGR02658 TTQ_MADH_Hv methylam 99.4 7E-10 1.5E-14 120.5 34.3 256 501-761 27-328 (352)
246 KOG0322 G-protein beta subunit 99.4 4.4E-12 9.6E-17 127.0 15.4 242 472-721 48-322 (323)
247 KOG1334 WD40 repeat protein [G 99.4 2.2E-12 4.8E-17 138.4 13.8 250 512-761 133-422 (559)
248 PRK01029 tolB translocation pr 99.4 7.6E-11 1.6E-15 133.2 27.1 215 543-761 165-401 (428)
249 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4E-16 123.2 19.7 146 609-761 8-177 (194)
250 PRK04792 tolB translocation pr 99.4 5.7E-11 1.2E-15 135.1 26.0 221 474-703 212-447 (448)
251 COG5354 Uncharacterized protei 99.4 1.6E-10 3.5E-15 125.1 27.7 273 480-761 72-393 (561)
252 PF08662 eIF2A: Eukaryotic tra 99.4 8.2E-11 1.8E-15 118.6 21.3 154 484-643 10-185 (194)
253 KOG0974 WD-repeat protein WDR6 99.4 2.3E-11 5E-16 141.1 19.2 266 480-761 8-286 (967)
254 KOG4547 WD40 repeat-containing 99.3 1.8E-10 3.9E-15 127.0 24.2 187 489-678 3-221 (541)
255 KOG2315 Predicted translation 99.3 3.2E-10 6.8E-15 124.3 24.9 249 483-744 129-411 (566)
256 COG2706 3-carboxymuconate cycl 99.3 3.4E-09 7.4E-14 111.4 31.6 261 500-760 15-318 (346)
257 TIGR03300 assembly_YfgL outer 99.3 2.6E-09 5.6E-14 118.8 32.8 252 490-761 104-377 (377)
258 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.4E-16 133.9 12.4 281 470-759 726-1032(1034)
259 KOG0974 WD-repeat protein WDR6 99.3 1.6E-10 3.6E-15 134.1 21.3 118 474-596 170-289 (967)
260 KOG2314 Translation initiation 99.3 5.1E-10 1.1E-14 122.1 23.3 271 478-755 249-559 (698)
261 KOG2041 WD40 repeat protein [G 99.3 6.5E-10 1.4E-14 123.7 22.7 276 478-759 13-333 (1189)
262 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.2E-08 7E-13 107.6 35.6 232 487-728 53-336 (352)
263 TIGR03300 assembly_YfgL outer 99.2 8.6E-09 1.9E-13 114.7 30.8 253 490-761 64-336 (377)
264 KOG0309 Conserved WD40 repeat- 99.2 8E-11 1.7E-15 131.5 14.0 278 480-760 25-336 (1081)
265 PRK04043 tolB translocation pr 99.2 8.7E-09 1.9E-13 116.0 30.8 229 501-741 169-419 (419)
266 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.4E-14 119.7 22.5 188 531-723 3-221 (541)
267 KOG0280 Uncharacterized conser 99.2 3.3E-10 7.2E-15 115.4 15.8 198 482-679 124-335 (339)
268 COG5354 Uncharacterized protei 99.2 4.6E-09 1E-13 114.0 23.9 272 478-761 31-346 (561)
269 COG4946 Uncharacterized protei 99.2 1.8E-08 4E-13 108.2 27.9 283 456-752 204-507 (668)
270 PLN02919 haloacid dehalogenase 99.2 3.1E-08 6.6E-13 123.0 33.5 237 483-726 571-892 (1057)
271 PLN02919 haloacid dehalogenase 99.2 2.2E-08 4.9E-13 124.2 32.0 233 525-761 571-886 (1057)
272 PRK04043 tolB translocation pr 99.1 2.3E-08 4.9E-13 112.6 28.6 201 543-754 169-388 (419)
273 PF04762 IKI3: IKI3 family; I 99.1 6.6E-08 1.4E-12 118.1 34.8 282 477-761 73-454 (928)
274 KOG2314 Translation initiation 99.1 1.7E-08 3.6E-13 110.4 25.2 270 483-761 214-523 (698)
275 COG5170 CDC55 Serine/threonine 99.1 1.5E-09 3.3E-14 111.0 16.2 239 479-721 26-366 (460)
276 KOG1354 Serine/threonine prote 99.1 4.5E-09 9.8E-14 109.1 19.7 234 430-679 37-361 (433)
277 KOG1064 RAVE (regulator of V-A 99.1 3.7E-10 8.1E-15 136.2 12.3 189 475-679 2204-2400(2439)
278 KOG1064 RAVE (regulator of V-A 99.1 6.4E-10 1.4E-14 134.3 12.0 210 533-761 2180-2396(2439)
279 PF08450 SGL: SMP-30/Gluconola 99.0 5.5E-07 1.2E-11 94.1 31.8 218 525-751 3-243 (246)
280 PF08450 SGL: SMP-30/Gluconola 99.0 1E-06 2.3E-11 92.0 33.8 218 484-712 4-245 (246)
281 KOG1912 WD40 repeat protein [G 99.0 6.5E-08 1.4E-12 109.3 25.3 211 467-678 43-305 (1062)
282 KOG1409 Uncharacterized conser 99.0 5.5E-09 1.2E-13 108.6 15.4 245 512-761 15-268 (404)
283 KOG0280 Uncharacterized conser 99.0 2.5E-08 5.4E-13 101.9 19.9 240 480-720 70-331 (339)
284 KOG2041 WD40 repeat protein [G 99.0 9.8E-08 2.1E-12 106.8 25.4 308 430-758 26-403 (1189)
285 COG4946 Uncharacterized protei 99.0 1.7E-07 3.7E-12 101.0 26.1 274 477-761 357-652 (668)
286 KOG1912 WD40 repeat protein [G 99.0 2E-08 4.4E-13 113.3 19.9 236 482-723 18-305 (1062)
287 PF13360 PQQ_2: PQQ-like domai 99.0 3E-07 6.6E-12 94.9 27.4 216 500-727 2-235 (238)
288 KOG4532 WD40-like repeat conta 99.0 5.8E-08 1.3E-12 98.1 20.7 249 500-754 51-323 (344)
289 KOG0309 Conserved WD40 repeat- 98.9 3.8E-09 8.1E-14 118.4 10.7 218 461-678 96-340 (1081)
290 PRK11138 outer membrane biogen 98.9 2.9E-07 6.3E-12 103.2 26.0 256 490-761 119-392 (394)
291 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.6E-13 106.5 13.7 164 426-605 70-233 (390)
292 KOG4190 Uncharacterized conser 98.9 7.2E-09 1.6E-13 112.6 9.8 207 514-727 728-953 (1034)
293 KOG0882 Cyclophilin-related pe 98.9 2.3E-08 4.9E-13 107.1 13.0 253 477-732 7-315 (558)
294 KOG1832 HIV-1 Vpr-binding prot 98.8 2.6E-09 5.7E-14 121.4 5.6 265 468-752 1090-1378(1516)
295 PRK11138 outer membrane biogen 98.8 9.3E-07 2E-11 99.1 26.0 255 491-761 69-351 (394)
296 PF07433 DUF1513: Protein of u 98.8 4.4E-06 9.6E-11 88.3 28.6 243 482-754 7-277 (305)
297 PF13360 PQQ_2: PQQ-like domai 98.8 1.6E-06 3.4E-11 89.5 25.3 211 542-761 2-228 (238)
298 PF04762 IKI3: IKI3 family; I 98.8 8.8E-06 1.9E-10 99.7 35.5 242 482-724 259-566 (928)
299 KOG4532 WD40-like repeat conta 98.8 1.3E-06 2.8E-11 88.5 22.3 243 418-679 72-333 (344)
300 PF15492 Nbas_N: Neuroblastoma 98.8 1.9E-06 4.2E-11 88.6 23.8 228 484-727 2-264 (282)
301 KOG4714 Nucleoporin [Nuclear s 98.8 9E-08 1.9E-12 96.4 13.2 198 432-637 49-255 (319)
302 KOG1645 RING-finger-containing 98.8 7.2E-07 1.6E-11 94.8 20.2 249 503-761 175-459 (463)
303 COG5170 CDC55 Serine/threonine 98.7 7.4E-08 1.6E-12 98.9 11.4 234 520-761 25-307 (460)
304 PF00930 DPPIV_N: Dipeptidyl p 98.7 6.7E-06 1.5E-10 90.8 27.3 259 488-752 1-346 (353)
305 KOG0882 Cyclophilin-related pe 98.7 1.7E-07 3.8E-12 100.5 13.7 235 427-679 17-307 (558)
306 KOG3914 WD repeat protein WDR4 98.7 5.6E-07 1.2E-11 95.8 16.1 157 523-680 64-226 (390)
307 KOG1920 IkappaB kinase complex 98.6 5.1E-06 1.1E-10 99.0 24.9 244 479-727 68-327 (1265)
308 KOG1645 RING-finger-containing 98.6 1.2E-06 2.5E-11 93.2 16.8 246 470-722 184-461 (463)
309 KOG4714 Nucleoporin [Nuclear s 98.6 5E-07 1.1E-11 91.2 13.0 194 482-678 39-255 (319)
310 PRK02888 nitrous-oxide reducta 98.6 1.1E-05 2.4E-10 92.4 25.5 178 573-752 201-450 (635)
311 KOG1832 HIV-1 Vpr-binding prot 98.6 2.4E-08 5.3E-13 113.7 3.7 200 511-727 1091-1296(1516)
312 PF04053 Coatomer_WDAD: Coatom 98.6 5.3E-06 1.1E-10 93.6 21.7 224 517-760 28-259 (443)
313 PF15492 Nbas_N: Neuroblastoma 98.6 2.6E-05 5.6E-10 80.5 24.0 187 482-679 46-261 (282)
314 cd00216 PQQ_DH Dehydrogenases 98.6 2.8E-05 6.2E-10 89.6 27.6 258 491-761 61-422 (488)
315 PF02897 Peptidase_S9_N: Proly 98.5 0.00025 5.4E-09 80.0 34.3 243 482-729 126-411 (414)
316 KOG1275 PAB-dependent poly(A) 98.5 2.9E-06 6.2E-11 98.1 18.3 176 578-761 148-340 (1118)
317 COG3391 Uncharacterized conser 98.5 0.00014 3.1E-09 81.1 30.9 253 503-759 13-279 (381)
318 KOG1275 PAB-dependent poly(A) 98.5 2.1E-06 4.6E-11 99.1 16.0 181 490-676 146-341 (1118)
319 KOG4649 PQQ (pyrrolo-quinoline 98.5 9.9E-05 2.1E-09 74.9 25.8 258 490-761 62-349 (354)
320 KOG2066 Vacuolar assembly/sort 98.5 4.7E-06 1E-10 95.5 18.1 181 522-722 40-233 (846)
321 KOG2066 Vacuolar assembly/sort 98.4 5.6E-06 1.2E-10 94.9 17.6 182 479-677 39-233 (846)
322 PF14583 Pectate_lyase22: Olig 98.4 0.00068 1.5E-08 74.1 32.5 270 485-760 41-378 (386)
323 KOG2695 WD40 repeat protein [G 98.4 6.1E-07 1.3E-11 93.6 7.8 160 581-742 228-401 (425)
324 COG0823 TolB Periplasmic compo 98.4 3.6E-05 7.8E-10 86.6 22.2 188 557-749 185-385 (425)
325 PF08596 Lgl_C: Lethal giant l 98.4 3.8E-05 8.3E-10 85.6 22.2 260 481-753 3-326 (395)
326 KOG2114 Vacuolar assembly/sort 98.4 5.7E-05 1.2E-09 87.4 23.3 207 528-739 30-262 (933)
327 COG0823 TolB Periplasmic compo 98.4 3.6E-05 7.9E-10 86.6 21.7 204 503-714 175-391 (425)
328 KOG3621 WD40 repeat-containing 98.4 4.8E-05 1E-09 86.5 22.2 274 478-759 32-349 (726)
329 PF06433 Me-amine-dh_H: Methyl 98.4 0.00033 7.1E-09 75.2 27.4 256 501-761 17-318 (342)
330 cd00216 PQQ_DH Dehydrogenases 98.4 0.00018 3.8E-09 83.1 27.6 228 492-727 111-429 (488)
331 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00035 7.6E-09 71.1 25.4 143 491-638 23-167 (354)
332 PF11768 DUF3312: Protein of u 98.3 0.00061 1.3E-08 76.8 29.8 90 670-761 237-327 (545)
333 KOG2695 WD40 repeat protein [G 98.3 2.4E-06 5.2E-11 89.3 9.3 159 484-646 216-386 (425)
334 PF07433 DUF1513: Protein of u 98.3 0.00023 5E-09 75.5 23.9 193 566-761 6-245 (305)
335 PF00400 WD40: WD domain, G-be 98.3 2.8E-06 6.1E-11 61.7 6.9 38 470-507 2-39 (39)
336 KOG3617 WD40 and TPR repeat-co 98.3 1.4E-05 3.1E-10 91.5 15.3 261 483-761 19-331 (1416)
337 KOG1920 IkappaB kinase complex 98.3 0.00017 3.7E-09 86.4 24.4 227 520-760 67-319 (1265)
338 KOG2114 Vacuolar assembly/sort 98.2 0.00041 9E-09 80.5 26.4 194 481-678 27-244 (933)
339 COG3391 Uncharacterized conser 98.2 0.00038 8.2E-09 77.8 26.0 220 482-704 76-310 (381)
340 PRK02888 nitrous-oxide reducta 98.2 0.0001 2.2E-09 84.7 21.5 215 487-711 200-450 (635)
341 PF00400 WD40: WD domain, G-be 98.2 3.8E-06 8.2E-11 61.0 6.4 39 511-549 1-39 (39)
342 PF04053 Coatomer_WDAD: Coatom 98.2 0.00026 5.6E-09 80.1 23.6 224 475-723 28-263 (443)
343 PF00780 CNH: CNH domain; Int 98.2 0.0013 2.8E-08 69.7 27.8 224 489-728 5-261 (275)
344 KOG3617 WD40 and TPR repeat-co 98.2 1.4E-05 3E-10 91.5 12.7 258 482-750 62-372 (1416)
345 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0015 3.3E-08 76.0 30.0 187 491-681 69-337 (527)
346 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0014 3.1E-08 72.4 28.2 229 479-712 42-347 (353)
347 PF03178 CPSF_A: CPSF A subuni 98.1 0.0013 2.8E-08 71.7 26.4 214 501-719 2-262 (321)
348 PF03178 CPSF_A: CPSF A subuni 98.1 0.00056 1.2E-08 74.5 22.8 208 544-759 3-261 (321)
349 PF11768 DUF3312: Protein of u 98.1 0.00052 1.1E-08 77.3 22.4 133 545-679 186-331 (545)
350 PF06977 SdiA-regulated: SdiA- 98.0 0.0047 1E-07 64.5 27.6 200 472-674 14-247 (248)
351 PF06977 SdiA-regulated: SdiA- 98.0 0.0017 3.6E-08 67.8 23.5 199 559-760 16-247 (248)
352 KOG1008 Uncharacterized conser 98.0 3.3E-06 7.2E-11 94.4 3.2 198 480-678 57-276 (783)
353 PF00780 CNH: CNH domain; Int 98.0 0.0026 5.7E-08 67.4 25.1 216 531-761 5-253 (275)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.016 3.5E-07 67.5 33.0 149 492-641 121-338 (527)
355 PF06433 Me-amine-dh_H: Methyl 98.0 0.0023 5E-08 68.8 23.6 239 443-689 54-329 (342)
356 COG3386 Gluconolactonase [Carb 97.9 0.0036 7.8E-08 67.5 25.1 219 526-752 29-274 (307)
357 KOG1008 Uncharacterized conser 97.9 2.9E-06 6.4E-11 94.8 1.4 197 522-722 57-275 (783)
358 PF02897 Peptidase_S9_N: Proly 97.9 0.0058 1.3E-07 68.9 27.8 221 523-746 125-383 (414)
359 PF04841 Vps16_N: Vps16, N-ter 97.9 0.019 4E-07 64.9 30.9 192 502-705 62-272 (410)
360 KOG3621 WD40 repeat-containing 97.9 0.00098 2.1E-08 76.1 19.6 137 428-584 43-188 (726)
361 PF08596 Lgl_C: Lethal giant l 97.8 0.0021 4.6E-08 71.8 20.9 206 468-676 75-334 (395)
362 PF05694 SBP56: 56kDa selenium 97.7 0.012 2.6E-07 65.0 25.0 221 490-712 86-393 (461)
363 PRK10115 protease 2; Provision 97.7 0.066 1.4E-06 64.5 33.9 238 482-727 129-399 (686)
364 PF04841 Vps16_N: Vps16, N-ter 97.7 0.029 6.4E-07 63.3 29.0 187 480-675 81-285 (410)
365 COG5276 Uncharacterized conser 97.7 0.098 2.1E-06 54.7 30.3 270 480-761 87-367 (370)
366 PF08553 VID27: VID27 cytoplas 97.7 0.0048 1E-07 73.7 22.7 140 534-676 494-646 (794)
367 COG3386 Gluconolactonase [Carb 97.6 0.015 3.3E-07 62.7 24.1 220 485-714 30-277 (307)
368 PRK13616 lipoprotein LpqB; Pro 97.6 0.0079 1.7E-07 70.7 22.5 208 500-718 328-564 (591)
369 KOG1897 Damage-specific DNA bi 97.6 0.095 2.1E-06 62.6 30.1 272 480-759 584-894 (1096)
370 KOG4640 Anaphase-promoting com 97.5 0.0004 8.7E-09 78.3 9.8 93 481-574 22-115 (665)
371 PF14583 Pectate_lyase22: Olig 97.5 0.037 8.1E-07 60.7 24.6 241 507-754 16-303 (386)
372 KOG4499 Ca2+-binding protein R 97.4 0.018 3.8E-07 58.3 19.2 209 533-744 27-264 (310)
373 PF05096 Glu_cyclase_2: Glutam 97.4 0.087 1.9E-06 55.1 24.9 194 512-713 34-251 (264)
374 PF08553 VID27: VID27 cytoplas 97.4 0.0065 1.4E-07 72.6 18.8 128 626-755 502-640 (794)
375 PRK10115 protease 2; Provision 97.4 0.19 4E-06 60.6 31.4 200 522-729 127-353 (686)
376 COG3490 Uncharacterized protei 97.4 0.028 6E-07 58.5 20.4 231 484-721 72-347 (366)
377 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.22 4.7E-06 56.0 29.3 260 491-759 37-356 (418)
378 KOG2395 Protein involved in va 97.3 0.0069 1.5E-07 67.4 16.3 135 617-754 344-492 (644)
379 PRK13684 Ycf48-like protein; P 97.3 0.28 6.1E-06 53.8 29.1 269 479-761 45-329 (334)
380 PRK13616 lipoprotein LpqB; Pro 97.3 0.033 7.1E-07 65.6 22.7 185 565-758 350-563 (591)
381 PF15390 DUF4613: Domain of un 97.3 0.048 1E-06 61.9 22.3 144 481-625 58-220 (671)
382 KOG4441 Proteins containing BT 97.3 0.015 3.2E-07 68.4 19.5 229 490-727 284-551 (571)
383 PHA02713 hypothetical protein; 97.2 0.02 4.3E-07 67.3 20.4 189 532-727 303-538 (557)
384 PF14870 PSII_BNR: Photosynthe 97.2 0.25 5.5E-06 53.1 26.8 267 479-760 16-301 (302)
385 PF07995 GSDH: Glucose / Sorbo 97.2 0.31 6.7E-06 53.4 27.8 232 482-717 4-330 (331)
386 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.3E-08 44.7 5.5 37 471-507 4-40 (40)
387 KOG1897 Damage-specific DNA bi 97.0 1 2.2E-05 54.3 31.1 270 479-759 629-938 (1096)
388 PF05096 Glu_cyclase_2: Glutam 97.0 0.35 7.5E-06 50.7 24.8 179 566-752 46-249 (264)
389 KOG4441 Proteins containing BT 97.0 0.024 5.3E-07 66.6 18.4 218 533-756 285-534 (571)
390 COG3204 Uncharacterized protei 97.0 0.14 2.9E-06 53.9 21.5 163 475-638 81-265 (316)
391 PF10647 Gmad1: Lipoprotein Lp 97.0 0.19 4.2E-06 52.8 23.2 188 566-755 25-230 (253)
392 smart00320 WD40 WD40 repeats. 97.0 0.0025 5.3E-08 43.6 5.8 39 511-549 2-40 (40)
393 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.025 5.4E-07 51.1 13.3 101 482-590 2-109 (111)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.22 4.8E-06 55.9 23.0 88 484-573 6-117 (415)
395 PF05694 SBP56: 56kDa selenium 96.8 1.2 2.5E-05 49.8 29.3 220 532-752 86-392 (461)
396 KOG4640 Anaphase-promoting com 96.8 0.0049 1.1E-07 69.9 9.8 92 606-701 20-114 (665)
397 COG3490 Uncharacterized protei 96.8 0.095 2.1E-06 54.6 18.0 155 597-753 58-245 (366)
398 KOG4499 Ca2+-binding protein R 96.8 0.12 2.6E-06 52.4 18.1 164 493-659 73-264 (310)
399 KOG2395 Protein involved in va 96.8 0.03 6.4E-07 62.6 15.0 142 575-721 344-499 (644)
400 TIGR03074 PQQ_membr_DH membran 96.8 0.39 8.6E-06 58.2 25.9 225 491-727 194-482 (764)
401 COG1520 FOG: WD40-like repeat 96.7 1.3 2.9E-05 49.1 29.2 192 490-689 68-277 (370)
402 COG4257 Vgb Streptogramin lyas 96.7 0.64 1.4E-05 48.5 22.9 236 482-730 64-313 (353)
403 COG3204 Uncharacterized protei 96.7 0.3 6.4E-06 51.4 20.5 199 517-719 81-309 (316)
404 PLN00033 photosystem II stabil 96.7 1.6 3.5E-05 49.0 34.8 146 610-760 242-396 (398)
405 PF02333 Phytase: Phytase; In 96.7 0.57 1.2E-05 51.8 23.9 188 489-679 66-292 (381)
406 COG5276 Uncharacterized conser 96.6 1.1 2.4E-05 47.2 24.2 195 520-724 85-287 (370)
407 PHA02713 hypothetical protein; 96.6 0.14 3.1E-06 60.2 20.4 177 577-760 304-530 (557)
408 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.5E-06 46.9 14.8 100 567-672 2-109 (111)
409 PF14870 PSII_BNR: Photosynthe 96.5 1.5 3.3E-05 47.2 30.1 223 520-754 15-253 (302)
410 KOG2444 WD40 repeat protein [G 96.5 0.0027 5.9E-08 63.9 4.6 139 536-678 33-178 (238)
411 TIGR03118 PEPCTERM_chp_1 conse 96.5 1.1 2.3E-05 47.7 23.3 197 482-679 25-281 (336)
412 KOG3630 Nuclear pore complex, 96.5 0.025 5.5E-07 68.0 12.7 144 523-667 102-262 (1405)
413 PF07995 GSDH: Glucose / Sorbo 96.5 1.2 2.5E-05 48.9 25.1 231 523-758 3-330 (331)
414 KOG2079 Vacuolar assembly/sort 96.5 0.037 8E-07 66.4 13.8 101 490-594 98-202 (1206)
415 TIGR02604 Piru_Ver_Nterm putat 96.3 2 4.3E-05 47.8 26.2 143 481-625 15-202 (367)
416 TIGR03074 PQQ_membr_DH membran 96.3 0.78 1.7E-05 55.7 24.2 113 533-646 194-354 (764)
417 PF15390 DUF4613: Domain of un 96.3 0.18 4E-06 57.4 17.3 170 565-743 20-212 (671)
418 PHA03098 kelch-like protein; P 96.3 0.16 3.4E-06 59.5 17.9 157 577-739 343-528 (534)
419 PF10647 Gmad1: Lipoprotein Lp 96.1 1.2 2.5E-05 47.0 22.0 140 523-667 25-184 (253)
420 PF10214 Rrn6: RNA polymerase 96.0 3 6.5E-05 51.1 27.5 177 519-723 77-277 (765)
421 COG1520 FOG: WD40-like repeat 95.9 3.7 7.9E-05 45.6 28.5 190 534-727 69-273 (370)
422 KOG2079 Vacuolar assembly/sort 95.9 0.051 1.1E-06 65.2 11.4 71 479-551 130-203 (1206)
423 PLN02153 epithiospecifier prot 95.9 0.84 1.8E-05 50.1 20.6 63 577-639 86-170 (341)
424 PHA03098 kelch-like protein; P 95.8 0.29 6.2E-06 57.3 17.4 183 490-679 294-513 (534)
425 PRK13684 Ycf48-like protein; P 95.8 1.2 2.7E-05 48.8 21.0 150 521-676 172-330 (334)
426 KOG1916 Nuclear protein, conta 95.7 0.012 2.6E-07 69.0 5.3 171 474-679 127-325 (1283)
427 KOG2444 WD40 repeat protein [G 95.7 0.02 4.3E-07 57.9 6.0 136 621-761 33-175 (238)
428 PLN00033 photosystem II stabil 95.7 4.8 0.0001 45.3 26.2 110 606-719 280-396 (398)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 0.85 1.8E-05 51.2 19.4 71 609-679 310-400 (415)
430 COG4257 Vgb Streptogramin lyas 95.6 2.1 4.6E-05 44.7 20.3 209 523-746 63-288 (353)
431 TIGR02604 Piru_Ver_Nterm putat 95.6 0.4 8.7E-06 53.3 16.5 147 607-754 14-204 (367)
432 PF10168 Nup88: Nuclear pore c 95.6 1.7 3.7E-05 52.4 22.6 94 522-638 85-181 (717)
433 KOG2377 Uncharacterized conser 95.5 1 2.2E-05 50.0 18.4 121 478-600 65-190 (657)
434 PHA02790 Kelch-like protein; P 95.4 0.53 1.2E-05 54.3 17.5 141 490-639 271-426 (480)
435 PF10168 Nup88: Nuclear pore c 95.4 0.8 1.7E-05 55.2 19.2 27 480-506 85-111 (717)
436 PF10214 Rrn6: RNA polymerase 95.4 6.3 0.00014 48.3 27.4 158 477-637 77-277 (765)
437 PF03022 MRJP: Major royal jel 95.4 4.9 0.00011 43.1 23.4 165 588-752 35-254 (287)
438 PF14727 PHTB1_N: PTHB1 N-term 95.2 7.1 0.00015 44.1 29.0 225 532-761 36-316 (418)
439 PLN02193 nitrile-specifier pro 94.7 10 0.00022 43.6 30.0 174 577-754 176-387 (470)
440 COG3292 Predicted periplasmic 94.7 2 4.2E-05 49.1 18.2 267 480-759 165-443 (671)
441 PLN02153 epithiospecifier prot 94.7 4.9 0.00011 44.1 21.7 142 490-639 32-228 (341)
442 TIGR03548 mutarot_permut cycli 94.7 4.7 0.0001 43.8 21.4 106 532-639 72-197 (323)
443 PF10433 MMS1_N: Mono-function 94.6 11 0.00025 43.6 29.8 246 488-743 219-503 (504)
444 KOG2247 WD40 repeat-containing 94.6 0.011 2.3E-07 65.5 0.4 148 524-674 37-185 (615)
445 TIGR03548 mutarot_permut cycli 94.5 5 0.00011 43.5 21.2 101 577-679 73-196 (323)
446 PF12894 Apc4_WD40: Anaphase-p 94.5 0.097 2.1E-06 39.9 5.3 33 479-512 11-43 (47)
447 PF12234 Rav1p_C: RAVE protein 94.5 1.4 3E-05 51.9 17.2 123 470-595 20-156 (631)
448 KOG1916 Nuclear protein, conta 94.4 0.024 5.2E-07 66.6 2.5 194 500-727 110-328 (1283)
449 PF12234 Rav1p_C: RAVE protein 94.4 0.99 2.1E-05 53.1 15.7 72 522-594 30-103 (631)
450 PHA02790 Kelch-like protein; P 94.3 2 4.3E-05 49.6 18.3 144 577-727 319-475 (480)
451 PLN02193 nitrile-specifier pro 94.3 4.2 9.2E-05 46.8 20.9 191 532-729 175-417 (470)
452 PF10395 Utp8: Utp8 family; I 94.2 9.8 0.00021 45.0 23.2 123 602-727 125-264 (670)
453 KOG1896 mRNA cleavage and poly 94.2 17 0.00038 45.2 25.5 137 619-760 1047-1210(1366)
454 KOG2280 Vacuolar assembly/sort 94.1 4.4 9.6E-05 47.8 19.8 238 501-752 64-314 (829)
455 PF10433 MMS1_N: Mono-function 94.1 9.4 0.0002 44.3 23.4 226 530-760 219-473 (504)
456 PF14781 BBS2_N: Ciliary BBSom 94.1 1.8 3.9E-05 40.5 13.7 119 525-645 2-134 (136)
457 PRK14131 N-acetylneuraminic ac 94.0 5.8 0.00013 44.2 20.7 38 588-626 190-230 (376)
458 COG1770 PtrB Protease II [Amin 94.0 16 0.00036 42.9 24.5 200 523-727 130-353 (682)
459 smart00036 CNH Domain found in 93.8 12 0.00025 40.5 30.0 233 490-731 12-279 (302)
460 COG5167 VID27 Protein involved 93.8 0.77 1.7E-05 51.5 12.4 146 570-721 472-631 (776)
461 KOG1898 Splicing factor 3b, su 93.8 22 0.00048 43.7 29.3 127 627-759 911-1044(1205)
462 COG3823 Glutamine cyclotransfe 93.7 2.4 5.2E-05 42.6 14.5 177 532-712 55-248 (262)
463 COG5167 VID27 Protein involved 93.6 1.4 3E-05 49.5 14.0 136 616-754 477-624 (776)
464 TIGR03547 muta_rot_YjhT mutatr 93.6 8.2 0.00018 42.3 20.7 40 715-754 291-331 (346)
465 PF14761 HPS3_N: Hermansky-Pud 93.6 3.4 7.3E-05 42.0 15.7 141 534-677 29-214 (215)
466 COG3823 Glutamine cyclotransfe 93.5 2.1 4.6E-05 43.0 13.8 170 577-751 56-247 (262)
467 PF02333 Phytase: Phytase; In 93.2 16 0.00036 40.5 22.0 181 577-761 68-288 (381)
468 PF14761 HPS3_N: Hermansky-Pud 93.1 6.4 0.00014 40.0 16.9 103 492-597 29-165 (215)
469 PF08728 CRT10: CRT10; InterP 93.0 2.8 6.1E-05 49.9 16.3 110 567-676 103-245 (717)
470 COG1506 DAP2 Dipeptidyl aminop 92.9 26 0.00056 41.9 26.3 149 475-626 55-235 (620)
471 TIGR03547 muta_rot_YjhT mutatr 92.8 16 0.00035 39.9 21.5 40 587-626 168-209 (346)
472 KOG2377 Uncharacterized conser 92.7 1.5 3.3E-05 48.6 12.5 104 647-752 65-172 (657)
473 KOG2280 Vacuolar assembly/sort 92.7 3.6 7.8E-05 48.5 16.1 91 586-678 63-157 (829)
474 PF12894 Apc4_WD40: Anaphase-p 92.6 0.36 7.7E-06 36.8 5.5 31 521-551 11-41 (47)
475 KOG3630 Nuclear pore complex, 92.6 0.92 2E-05 55.3 11.5 141 608-751 102-261 (1405)
476 PRK14131 N-acetylneuraminic ac 92.4 10 0.00023 42.2 19.6 39 716-754 314-353 (376)
477 PRK05560 DNA gyrase subunit A; 92.4 19 0.00042 44.3 23.1 226 530-759 495-768 (805)
478 PRK05560 DNA gyrase subunit A; 92.0 38 0.00082 41.8 28.4 260 486-750 493-797 (805)
479 PF10395 Utp8: Utp8 family; I 92.0 3.9 8.6E-05 48.2 15.7 164 479-645 129-314 (670)
480 COG1506 DAP2 Dipeptidyl aminop 92.0 27 0.00059 41.7 23.5 146 517-667 55-234 (620)
481 TIGR01063 gyrA DNA gyrase, A s 92.0 39 0.00084 41.7 27.7 264 482-750 487-794 (800)
482 PF07569 Hira: TUP1-like enhan 91.8 0.99 2.1E-05 46.4 9.5 65 614-678 18-96 (219)
483 KOG1983 Tomosyn and related SN 91.7 3.8 8.3E-05 51.4 16.2 228 481-726 37-268 (993)
484 PF07250 Glyoxal_oxid_N: Glyox 91.7 3.4 7.4E-05 43.1 13.4 129 630-758 48-194 (243)
485 PF13449 Phytase-like: Esteras 91.4 25 0.00054 38.4 22.9 100 609-709 87-231 (326)
486 TIGR03606 non_repeat_PQQ dehyd 91.3 31 0.00068 39.4 32.0 55 479-533 29-90 (454)
487 PF14781 BBS2_N: Ciliary BBSom 91.3 5.1 0.00011 37.6 12.6 111 612-727 4-130 (136)
488 KOG2247 WD40 repeat-containing 91.2 0.025 5.4E-07 62.7 -3.0 141 609-756 37-181 (615)
489 PF13449 Phytase-like: Esteras 90.9 28 0.0006 38.0 23.3 142 522-665 20-231 (326)
490 TIGR03118 PEPCTERM_chp_1 conse 90.9 26 0.00056 37.6 25.1 217 523-743 24-307 (336)
491 PRK13613 lipoprotein LpqB; Pro 90.7 41 0.00089 40.0 22.6 190 566-757 364-576 (599)
492 PF08801 Nucleoporin_N: Nup133 90.2 12 0.00026 42.3 17.5 31 693-723 190-220 (422)
493 PF07569 Hira: TUP1-like enhan 89.9 1.7 3.6E-05 44.8 9.2 62 699-761 17-93 (219)
494 KOG1896 mRNA cleavage and poly 89.9 38 0.00083 42.4 21.4 173 501-677 1004-1213(1366)
495 COG5290 IkappaB kinase complex 89.7 6.2 0.00013 46.7 14.1 93 610-706 250-350 (1243)
496 KOG1898 Splicing factor 3b, su 89.0 22 0.00047 43.8 18.3 105 612-722 939-1048(1205)
497 KOG1900 Nuclear pore complex, 88.8 3.9 8.4E-05 51.1 12.3 137 624-761 95-270 (1311)
498 PF11498 Activator_LAG-3: Tran 88.6 0.13 2.9E-06 54.4 0.0 12 30-41 360-371 (468)
499 PF08728 CRT10: CRT10; InterP 88.6 4.7 0.0001 48.1 12.6 112 482-594 103-245 (717)
500 PF08801 Nucleoporin_N: Nup133 87.8 14 0.0003 41.8 15.8 185 521-761 26-217 (422)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=365.33 Aligned_cols=306 Identities=24% Similarity=0.406 Sum_probs=271.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
..+++|+-|.+++.| |..+. .+..+.++|...|.|++|+|||+.||+|+.||+|++||.++
T Consensus 128 ~~l~tGsGD~TvR~W----------------D~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLW----------------DLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ceEEecCCCceEEee----------------ccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 456777766655555 44443 45677899999999999999999999999999999999999
Q ss_pred CeEE-EEeccCCcceEEEEEcC-----CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 511 FTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 511 ~~~~-~~l~~h~~~V~~v~fsp-----dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
++.+ ..+.+|..+|++++|.| ..++||+++.||+|+|||+..+. ++..+.+|+.+|+|++|-- ..++++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliySgS 265 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYSGS 265 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEecC
Confidence 8766 78899999999999976 56799999999999999998755 5899999999999999974 46899999
Q ss_pred CCCcEEEEECCCCeeeeEEecCCC-eeEEEEe-----------cCCC-------------------------EEEEEEcC
Q 004327 585 NNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ-----------PRLG-------------------------RILAAAIE 627 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fs-----------pd~~-------------------------~Llags~d 627 (761)
.|++|++|+...|.+.+.++.+.. |+.++.+ |.++ .+++++.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999999999999888875543 5555444 4343 49999999
Q ss_pred CeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 628 NYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 628 g~I~IwDl~t-~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
.++.+|+... .+++..+.+|...|+.+.|+||++||++++ |..|++||-+++ +.+..|.+|-..|+.++|+.|.+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCcc
Confidence 9999999765 468888999999999999999999999999 999999999998 78899999999999999999999
Q ss_pred EEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 706 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 706 ~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999888 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-43 Score=360.16 Aligned_cols=290 Identities=23% Similarity=0.377 Sum_probs=266.7
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
.++-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+..+.++.++|..+|.||+|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEE
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 623 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~----g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Lla 623 (761)
|..++....+.+.+|...|++++|.|- ...+|++++.||.|+|||+..+.++..+..+ ..|+|++|--+ +++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence 999999888999999999999999873 2358889999999999999999999888744 56999999766 78999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS 667 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s-----------pdg~-------------------------~Lasgs 667 (761)
++.|++|++|+...+++...+++|...|+.++.+ |.++ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999876 2233 489999
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCC
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN 745 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg 745 (761)
|.++.+|+..... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-+.|+.++|+.|.
T Consensus 344 Dd~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred CCceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 7799999976432 578888999999999999999999999999999999999999998 888999999999999999
Q ss_pred CEEEEEECCCeEEEcC
Q 004327 746 GMVASASHDKCVKIWK 761 (761)
Q Consensus 746 ~~LaSgs~DG~I~IWd 761 (761)
++|++|+.|.+++|||
T Consensus 422 RLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWD 437 (480)
T ss_pred cEEEEcCCCceEEEEE
Confidence 9999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-41 Score=351.93 Aligned_cols=287 Identities=26% Similarity=0.425 Sum_probs=266.0
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 547 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~V 547 (761)
..+..--+-+.+|..|.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||+|+.||+|++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 334444577889999999999999999999999999999999999999999999999999996 568999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~ 626 (761)
|++++.. ++..+.+|...|..++|+|+| .+|++++.|.+-++||++++..+.... +..+|.+++|++||..+++|+.
T Consensus 246 w~~~~e~-~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 246 WKLSQET-PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eccCCCc-chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence 9999754 588999999999999999997 556699999999999999988776655 4457999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CC
Q 004327 627 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TF 704 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp-dg 704 (761)
|..-+|||++++.++..+.+|..+|.+|+|+|+|..|++|+ |++++|||++.. .+++.+..|.+-|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCC
Confidence 99999999999999999999999999999999999999999 999999999876 66899999999999999998 78
Q ss_pred CEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 705 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+|++++.|++++||...++.++ .+.+|++.|.++.+++|+.+|+|++.|.+|++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999988 7889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=315.57 Aligned_cols=291 Identities=18% Similarity=0.325 Sum_probs=263.1
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+...+++++|.++|.++.|++|.++|++++.||.+.|||.-+...+..++-...+|..++|+|.++++|+|+-|..+.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 45566899999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EecCCC--C---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEec-CCCE
Q 004327 548 WDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP-RLGR 620 (761)
Q Consensus 548 WDl~t~--~---~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fsp-d~~~ 620 (761)
|++.+. + ...+.+.+|.+.+.|+.|.+| .. |++++.|.++.+||++++..+..|..+ +.|.++.++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC-Cc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999854 2 235678999999999999985 34 448888999999999999999999854 5699999999 9999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
|++|+.|+..++||++.+.++..|.+|...|++++|.|+|.-|++|+ |++.++||++.... ..++.-......|++++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEE
Confidence 99999999999999999999999999999999999999999999999 88999999998633 22223333456799999
Q ss_pred EeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 700 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|+..|++|++|..|.++.+||.-.++.+ .+.+|+..|+|+..+|||.-|+||+.|..||||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999998888777 8889999999999999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=325.51 Aligned_cols=266 Identities=26% Similarity=0.382 Sum_probs=247.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEEc
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpd--g~~Lasgs~Dg~I~VWdl 508 (761)
..+++|++++.+++|..+ ....+.+|.+|+..|.++.|+|. +..||+|+.||+|++|++
T Consensus 188 ~~laT~swsG~~kvW~~~-------------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVP-------------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CeEEEeecCCceeEeecC-------------------CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 578999999999888332 22567889999999999999996 668999999999999999
Q ss_pred CCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 509 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 509 ~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
++..++..+.+|...|..|+|+|+|++|+|+++|.+-++||+++... +....||...|.+++|+++| .++++|+.|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDG-SLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCC-ceeeccCccch
Confidence 99999999999999999999999999999999999999999998764 67778999999999999996 78889999999
Q ss_pred EEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEE
Q 004327 589 IRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASV 666 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~sp-dg~~Lasg 666 (761)
-+|||++++.++..+..+ ..|..+.|+|+|-.+++|+.|++++|||++...++..+.+|..-|+.|+|+| .|.+|+++
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 999999999999988854 5699999999999999999999999999999999999999999999999998 78899999
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 667 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 667 s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
+ |++++||..++. .++..+.+|++.|.++.+++++.+|++++.|.++++|.
T Consensus 407 syD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9 999999999887 88999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=305.86 Aligned_cols=289 Identities=23% Similarity=0.431 Sum_probs=264.1
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC-CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~-t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
.++..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|++|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4566788999999999999999999999999999999954 456678889999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg 628 (761)
|+++++. ++.+++|.+.|+.++-+.-|..++++++.|+++++||+++..++.++.....++++.|...+..+++|+-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999875 888999999999999777788899999999999999999999999998888999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCCC----ceEEEEEeC
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGN----KFHSCVFHP 702 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~-~~i~~l~~~~~----~I~sl~fsp 702 (761)
.|++||++.....+.+.+|.+.|+.+..+++|.++.+-+ |.++++||++..... +|+..+.++.. ....|+|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999999 999999999864332 45666665533 356789999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
++.++.+|+.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999887666 88899999999999999999999999999976
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-35 Score=292.41 Aligned_cols=285 Identities=20% Similarity=0.340 Sum_probs=245.2
Q ss_pred EEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcC-----CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC
Q 004327 470 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~-----t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG 543 (761)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|..++.+++|+..|..+..++|+.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 445679999999999999986 5689999999999999864 4677899999999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecC--CC
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPR--LG 619 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~--~~~i~~l~fspd--~~ 619 (761)
++++||+.+++ +.+.|.+|...|.+++|+++. .-+++|+.|.+|++||+........... ..-|.|++|+|+ ..
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999874 688999999999999999995 5666999999999999985443333332 356999999998 67
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 620 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
+|+.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+ ||.+.+||++.+ ++++.+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999987 5565554 67889999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE----ccC-----CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l----~~h-----~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|+|+..+|+.+. +..|+|||+.++.++ .+ .+. .-...+++|++||..|++|..|+.|++|.
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999987555544 446999999998877 11 122 23356789999999999999999999994
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-34 Score=299.39 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=254.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
.. .+..+..|...|.++.|+++ ..++++++.|+.|++||+++++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 36777889889999999998 4677778789999999999888887776 445799999999977777777799999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
+||+++++.+..+..|...|.+++|+|++..+++++ |+.|++||+.++ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999875 5666666778899999999998877777
Q ss_pred EcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 711 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 6668899999999999999999999999999997
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-35 Score=286.75 Aligned_cols=268 Identities=19% Similarity=0.388 Sum_probs=243.8
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-eeEEeecCCCCeEEE
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 570 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-~i~~~~~h~~~V~sl 570 (761)
-+||++++|.+|++|...+|.+..++......|..+.+.|+++.||+++.- .|++||+++.+. ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999998888899999999999999998765 699999998765 889999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCC
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 649 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~-h~~ 649 (761)
.|..+| ..+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|+|||+.+..+...+.. ...
T Consensus 90 gF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999996 677799999999999999999999999999999999999999999999999999999998877666543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC-
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 724 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~---~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~- 724 (761)
.|.++...|||.+++.+. .|..++|++-... ....+..+..|...+..|.+|||+++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 34566778899999999999999999999999999999999887
Q ss_pred cEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 725 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 725 ~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.. .+.+|...+++++||.|+.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7779999999999999999999999999999997
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=323.58 Aligned_cols=286 Identities=30% Similarity=0.531 Sum_probs=256.6
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 472 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 472 v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
...+.. |...|+|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444544 48899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~d 627 (761)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999998 88889999999999999999999999855 479999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEcCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEE
Q 004327 628 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 699 (761)
Q Consensus 628 g~I~IwDl~t~~--~i~~l~~h~~~--I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~---I~sl~ 699 (761)
+.|+|||+.++. ++..+..+... +++++|+|+++||+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776665 99999999999999999 889999999887 666666666654 44555
Q ss_pred EeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccC-CCCeeEEEEeCCCCEEEEEE--CCCeEEEcC
Q 004327 700 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 761 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~slafspdg~~LaSgs--~DG~I~IWd 761 (761)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..++|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987666 77889 89999999999999999998 799999995
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-35 Score=305.70 Aligned_cols=290 Identities=26% Similarity=0.468 Sum_probs=269.7
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+.+...+.+|..+|+.+-|+|+-.++++++.|.+|++||..++++...+++|.+.|.+|+|+..|++|++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 33456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEc
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd~~~Llags~ 626 (761)
||......+++...+|...|.+++|-|.| ..+++|+.|.+|+.|++.++.+++.+..+.. +..+..+.||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99997666788899999999999999997 4555999999999999999999999986554 788899999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004327 627 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 690 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd---------------g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~ 690 (761)
|.+|++|-+.++.+...+..|..+|.|++|.|. +.++++++ |++|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999773 24888899 999999999998 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 691 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 691 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|.+.|..++|+|.|+||+++.+|++|++||+++..++ ++.+|+..|+++.|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7789999999999999999999999999999995
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=300.91 Aligned_cols=289 Identities=21% Similarity=0.384 Sum_probs=264.8
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
.+++..+++.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..|++++-..|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags 625 (761)
.||++..+. ++.|.+|-..|+|++.+|.- .++++|+.|.+++|||+++...+..+. +...|..+.+.|-...+++++
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998765 89999999999999999984 677799999999999999999999988 556789999999889999999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 626 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
.|++|++||++.++....+..|+..|.+++.+|....+++++.+.|+.|++..+ ..+..+.+|...|.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999778999999877 6777788999999999998887
Q ss_pred EEEEEEcCCcEEEEECCCCcEEEE---------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 706 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 706 ~L~sgs~dg~I~IwDl~~~~~~~l---------~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++++|+.+|.+.+||.+++-.... ...+..|++.+|...+..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588999999999999999865511 12456799999999999999999999999995
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-33 Score=300.44 Aligned_cols=293 Identities=20% Similarity=0.332 Sum_probs=249.8
Q ss_pred CCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec---cCCcceEEEEEcCCCCEEEEEeC
Q 004327 465 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 541 (761)
Q Consensus 465 ~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~---~h~~~V~~v~fspdg~~Lasgs~ 541 (761)
.|.+|+.-.+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..+. +|.+.|.++.|+||+..|++++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 688889999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCeEEEEecCCCCc------------------------------------------eeEEeecCCCCeEEEEEcCCCCcE
Q 004327 542 DRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 542 DG~I~VWDl~t~~~------------------------------------------~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
|.+++|||+.+.+. ++..+.+|...|+++..++++ ..
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CE
Confidence 99999999986542 123456899999999999998 56
Q ss_pred EEEEeCCCcEEEEECCCCeeee-------------------------------EEec-----------------------
Q 004327 580 LCSCDNNSEIRYWSINNGSCAG-------------------------------VFKC----------------------- 605 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~~~~~-------------------------------~~~~----------------------- 605 (761)
|++|+.||.|.-||+.++..-+ .+..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999986543210 0000
Q ss_pred ----------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEE
Q 004327 606 ----------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 655 (761)
Q Consensus 606 ----------------------------~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~ 655 (761)
.-...+++++|++..+++|+.|+.|+||.+.... ....+..|.++|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 0013468899999999999999999999998754 3445667999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccC
Q 004327 656 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAH 732 (761)
Q Consensus 656 ~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h 732 (761)
|+||+.||+++. .+.+.+||+.+... ....+..|...|.+++|+|+..++++|+-|-.|.||+++..... ...+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999988643 44455668999999999999999999999999999999765433 45589
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 733 DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 733 ~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...|+.+.|- |...|++.+.|-.||+|.
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9899999996 556899999999999995
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=308.75 Aligned_cols=277 Identities=21% Similarity=0.441 Sum_probs=248.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
+.+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999998777777788999999999999999999999999999999987544 44
Q ss_pred EeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004327 559 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 559 ~~~~h-~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~dg~I~IwDl~ 636 (761)
.+..| ...|.+++|+|+ +..|++|++||+|+|||....+..+.+..++ .+.++.|+|..+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44444 489999999997 5677799999999999999888877777544 58999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 004327 637 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 714 (761)
Q Consensus 637 t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg 714 (761)
++.++.++.+|+..|..+.|++++.+|++++ |..+++||+++. +.+..+.+|...+.++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999865 6677888999999999999966 5677888999
Q ss_pred cEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 715 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 715 ~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|..|.+...+.+ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999993
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-33 Score=296.86 Aligned_cols=332 Identities=20% Similarity=0.366 Sum_probs=273.1
Q ss_pred CCcccccCCeeeccccCCceeeccCCCC------------------------------CCCCCccccceecCCCceeEEE
Q 004327 423 PNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKGFTFTEF 472 (761)
Q Consensus 423 ~~~l~~~~~~i~~gs~d~~v~~~~s~~~------------------------------~~~~d~~~r~~d~~~g~~~~~v 472 (761)
...+.+...++++|...+++++|..... .++++++++++-+++|.. +
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---v 140 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---V 140 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---c
Confidence 3344445567888888888888744331 455667777777777765 4
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 473 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
..+.+|...|++|+|-|... .+++|+.|++|.+|+-..++...++..|...|.|++|+|||++|++++.||+|.+||=.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 55789999999999999766 59999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe----eEEEEecCCCEEEEE
Q 004327 552 NPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA----TQMRFQPRLGRILAA 624 (761)
Q Consensus 552 t~~~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i----~~l~fspd~~~Llag 624 (761)
+++. +..+. +|.+.|++++|+||+..++ +++.|.+++|||+.+.+++.++.....+ ..+.|. ...|++.
T Consensus 221 tge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItV 296 (603)
T KOG0318|consen 221 TGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITV 296 (603)
T ss_pred CccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEE
Confidence 8775 66666 8999999999999976655 8999999999999999999999876653 334555 5789999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcee--------EE---------
Q 004327 625 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------IH--------- 686 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~--------i~--------- 686 (761)
+.+|.|.+++.........+.+|...|+++..++++++|++|+ ||.|.-|+..++...+. +.
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 9999999999999999999999999999999999999999999 99999999854321100 00
Q ss_pred --------------------------------------------------------------------------------
Q 004327 687 -------------------------------------------------------------------------------- 686 (761)
Q Consensus 687 -------------------------------------------------------------------------------- 686 (761)
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence
Q ss_pred -------------------------EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEE
Q 004327 687 -------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSL 739 (761)
Q Consensus 687 -------------------------~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~sl 739 (761)
....|..+|++++|+||+.||+++...+.|.+||+.+.+.. ...-|...|.|+
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 01123456677777777777777777777777777776665 444699999999
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 004327 740 AASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 740 afspdg~~LaSgs~DG~I~IWd 761 (761)
+|+|+..+||||+.|-+|.||+
T Consensus 537 aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999995
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=275.57 Aligned_cols=280 Identities=23% Similarity=0.321 Sum_probs=240.2
Q ss_pred CCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcC
Q 004327 454 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP 531 (761)
Q Consensus 454 ~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fsp 531 (761)
.|.++|+|...+| .+.+++....+.|+.+.+.||+++||+++. -.|++||+.+.+ ++.+|.+|...|+.|.|..
T Consensus 18 YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 18 YDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred CcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 3445555566666 466677777788999999999999999885 689999998765 5799999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCe
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGA 609 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i 609 (761)
+|+++++|++||+++|||++... ......|..+|+++..+|+-..+| +|+.+|.|++||+.+..+...+. ....+
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcce
Confidence 99999999999999999999844 344445889999999999965555 99999999999999877666554 33568
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 682 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~------~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~ 682 (761)
.++.+.|+|.+++++...|..++|++-+. +++.++..|.+.|..+.++||++||++++ |.+++||+..+. .
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~ 248 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--F 248 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--e
Confidence 99999999999999999999999998653 56677889999999999999999999999 999999999875 3
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEe
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 742 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafs 742 (761)
+.-..+.+|...+..|+||.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 555677889999999999999999999999999999999999988 667888888787754
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-33 Score=298.29 Aligned_cols=283 Identities=25% Similarity=0.448 Sum_probs=249.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCC--CeEE--EEec----------cCCcceEEEEEcCCCCE
Q 004327 471 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSR 535 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t--~~~~--~~l~----------~h~~~V~~v~fspdg~~ 535 (761)
.++.++ |+.+|++++|+|-.. +|++|+.|-+.++|++.. .... ..|+ ..+..|++++|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 345556 999999999999555 899999999999999864 1111 1111 13357999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEEE
Q 004327 536 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 614 (761)
Q Consensus 536 Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i-~~l~f 614 (761)
||+|++||.++||+.... .+.++..|+++|.++.|+..|.+++ +++.|+++.+||..++.....+..+... ..+.|
T Consensus 250 LatG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 999999999999998853 3788999999999999999975555 9999999999999999999988877666 77899
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 615 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 615 spd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
..+ ..|++++.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|++++ |++++||+.... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 876 6799999999999999999999999999999999999999999999999 899999998776 78889999999
Q ss_pred ceEEEEEeCCCC---------EEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 694 KFHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 694 ~I~sl~fspdg~---------~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|..+.|+|++. .+++++.|++|++||+..+.++ ++..|..+|++++|+|+++|+|+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999863 5899999999999999999998 7779999999999999999999999999999995
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-33 Score=295.00 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=252.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
+..|++++|+.+|.+||+|+.||.++||+. ++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++.. ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EE
Confidence 467999999999999999999999999996 5678889999999999999999999999999999999999988764 66
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
.+.-|..+-.++.|-.+ .-|++++.|+.|+|+.+....++.++. ++++|.++.|+|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 77778888788999865 467789999999999999888887776 567799999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 638 QVCRLKLQGHKNQVHSVCWNTSG---------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 638 ~~~i~~l~~h~~~I~sl~~spdg---------~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
..+...+.+|...|+.+.|+|+| ..+++++ |++|++||+..+ .+++.+..|..+|++++|+|+++++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999965 3567776 999999999888 8999999999999999999999999
Q ss_pred EEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 708 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++|+.||.|.||++++++.+......+.|..++|+.+|.+|..+-.||.+++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999997777888899999999999999999999998754
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=305.69 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=252.9
Q ss_pred EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 470 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t-~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45778999999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~ 626 (761)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.+..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999886 33333 3456899999999988999999999999999999998888764 467899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeC
Q 004327 627 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 702 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~--~~I~sl~fsp 702 (761)
|+.++||+.+.+..+..... +.....||..+|++.++++-+ |+.|.+|.+...........+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554332 334567899999999999988 9999999986544333344455553 4456789999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEcC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg-~~LaSgs~DG~I~IWd 761 (761)
||.+|++|+.||.+.+||.++.+++ .+.+|+..+..+.|+|.. ..||||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999888 888999999999999975 5899999999999997
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-33 Score=276.09 Aligned_cols=273 Identities=16% Similarity=0.289 Sum_probs=229.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
..+.+++.|..+.+|.-..+ +...| ..++.+.||+..|..++.++||.+.++++.|+++++||+.+
T Consensus 29 ~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~ 94 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT 94 (315)
T ss_pred ceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC
Confidence 35566667766666622222 12222 45778999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec-CCCCeEEEEEcCCC-CcEEEEEeCCCc
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSK-EDLLCSCDNNSE 588 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~-h~~~V~sl~fsp~g-~~llasgs~Dg~ 588 (761)
++....|.+|...|.+++|++|++.|++|+.|.+|++|++.... .+..... +.+.|.|++|+|+. +.+|++++.|++
T Consensus 95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 99999999999999999999999999999999999999998633 2333222 37899999999985 678889999999
Q ss_pred EEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 589 IRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
|++||+++.+....+..+ +.++.+.++|||..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+.
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc
Confidence 999999998888777644 458999999999999999999999999999999988776 889999999999988888888
Q ss_pred CCeEEEEECCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 668 DELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~---------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
+..|+|||+.+. .++.++.. ......+++|++||..|+++..|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888999999887 44443321 13345788999999999999999999999874
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=269.24 Aligned_cols=283 Identities=24% Similarity=0.439 Sum_probs=239.5
Q ss_pred eEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCC---CeEEEEe-ccCCcceEEEEEcCCCCEEEEEeCCC
Q 004327 469 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t---~~~~~~l-~~h~~~V~~v~fspdg~~Lasgs~DG 543 (761)
+..+..+.+|++.|..++|+|- |..||+++.|+.|+||+... ..+...+ .+|+..|.+|+|+|.|++|+++++|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467789999999999999997 88999999999999999884 4455444 47999999999999999999999999
Q ss_pred eEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEe-cCCCeeEEEEecCC
Q 004327 544 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGATQMRFQPRL 618 (761)
Q Consensus 544 ~I~VWDl~t~~-~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~---~~~~~~~-~~~~i~~l~fspd~ 618 (761)
++.||.-..+. .++.++.+|...|.|++|+++| .+||+|+.|+.|.||.+..+ ++...+. +...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876554 3567899999999999999996 67889999999999999754 4555555 33458899999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 619 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~---t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3478999999999999999999999999999 899999986532 11235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCc------EE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEcC
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 761 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~------~~--~l~~h~~~V~slafspd-g~~LaSgs~DG~I~IWd 761 (761)
++.+.|. ...|++++.|+.|++|...... .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4459999999999999765431 11 33479999999999995 67999999999999994
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=292.57 Aligned_cols=290 Identities=20% Similarity=0.324 Sum_probs=243.4
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC---CeEEEEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 466 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 466 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t---~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
..+..+..++..|++.|+-+.||++|+|||+++.|.+..||++.. .+..+++.+|..+|..+.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456677888999999999999999999999999999999998754 45578999999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR 620 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~--~~~i~~l~fspd~~~ 620 (761)
..+.+||+.++......-.++...+.+++|.||+.. +++|+.|+.|..||++. ........ ...+.++++.+||.+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcE
Confidence 999999999987533333445688999999999866 55899999999999984 33333332 245889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc--eEE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS 697 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~--I~s 697 (761)
+++.+.|..|++|+.++...+..+. ...+|++++.+.|++++++.- +..|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665444 456899999999999988776 889999999854 556666666432 333
Q ss_pred EEEe-CCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEcC
Q 004327 698 CVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 761 (761)
Q Consensus 698 l~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg-~~LaSgs~DG~I~IWd 761 (761)
-||- .+..++++|++|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+|+||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3454 35589999999999999999999998 888999999999999976 5899999999999994
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.2e-32 Score=325.91 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC----e----EEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeE
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 545 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~----~----~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I 545 (761)
+..|.+.|++++|+|+|++||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 122333 346799999987 47899999999999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEe-cCCCEEEEE
Q 004327 546 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 624 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fs-pd~~~Llag 624 (761)
+|||+.++. .+..+.+|.+.|++++|+|....+|++|+.|+.|++||++++.++..+.....+.++.|+ +++.+|++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999765 477888999999999999865678889999999999999999998888877789999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC---CceeEEEeecCCCceEEEE
Q 004327 625 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 625 s~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~---~~~~i~~l~~~~~~I~sl~ 699 (761)
+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|++||+.... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788999999999997 677888888 9999999997532 2356778889999999999
Q ss_pred EeCCCCEEEEEEcCCcEEEEECCCCcEE--------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 700 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-32 Score=306.73 Aligned_cols=277 Identities=23% Similarity=0.382 Sum_probs=241.2
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC-------------------------------eEEEEec
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLE 518 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-------------------------------~~~~~l~ 518 (761)
.++.++..-...|+|+.|++|+++||.|..|..|++|.+... ....++.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 344455555567999999999999999999999999987631 1224467
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004327 519 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 598 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~ 598 (761)
+|.++|..+.|+|+.++|++++.|++|++|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC
Confidence 999999999999999999999999999999999866 478889999999999999995 888899999999999999988
Q ss_pred eeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 599 CAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 599 ~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
+++.+.++ +.+.|+.|+|+.+++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|+ |+.|++||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 88888744 6699999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-------------------------EEcc
Q 004327 677 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------------TLSA 731 (761)
Q Consensus 677 ~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------------------~l~~ 731 (761)
.++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+..
T Consensus 607 ~~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~t 683 (707)
T KOG0263|consen 607 ANG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYT 683 (707)
T ss_pred CCC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeee
Confidence 988 777888889999999999999999999999999999998542211 3334
Q ss_pred CCCCeeEEEEeCCCCEEEEE
Q 004327 732 HDKLVSSLAASTVNGMVASA 751 (761)
Q Consensus 732 h~~~V~slafspdg~~LaSg 751 (761)
...+|.++.|..-+-.|++|
T Consensus 684 K~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 684 KNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cCceEEEEEEeccceeEEec
Confidence 45678888888766455544
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=295.62 Aligned_cols=289 Identities=22% Similarity=0.350 Sum_probs=253.3
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
.+..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...+++++++|||.+||+|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 356677777777889999999999999999865 8999999999888889999999999999999999999999999999
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAA 624 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i--~~l~fspd~~~Llag 624 (761)
|||..++- ++.+|..|+..|+.+.|+..++ .+++.+-||+|+.||+......++|..+.++ .|++..|.|..+++|
T Consensus 376 vWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 376 VWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 99999754 6999999999999999999864 5558888999999999999999999987774 788888888888888
Q ss_pred EcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 625 AIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 625 s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
+.|. .|++|++.+|+.+-.+.+|.++|.+++|+|++..|++++ |.+|++||+-... ..+.++ .....+..+.|+|
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRP 530 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcC
Confidence 8875 799999999999999999999999999999999999999 9999999997542 122233 3466789999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EE----------------c----cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TL----------------S----AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l----------------~----~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|+.|++++-||.|.+||.+.+..+ .+ . ......+.+++++||.+|++|+....|+||+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999999999999999776544 11 1 1235689999999999999999999999985
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-31 Score=265.38 Aligned_cols=277 Identities=23% Similarity=0.379 Sum_probs=241.4
Q ss_pred cceEEEEecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEE
Q 004327 405 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 484 (761)
Q Consensus 405 ~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~ 484 (761)
....+.|+.|. +.+.+++.|+.+-+| |..+ -..+..++-....|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvW----------------Ds~T---tnK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVW----------------DSFT---TNKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEE----------------Eccc---ccceeEEecCceeEEE
Confidence 45667777765 566777887777666 3222 2345667777888999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCC------eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 485 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 485 lafSpdg~~Lasgs~Dg~I~VWdl~t~------~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
|+|+|.|+++|+|+-|+...||++.+. ...+.+.+|++.+.|+.|.+| ..|+|++.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 345778999999999999874 5799999999999999999875 88
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
.|.+|.+.|.++++.|...+.|++|+-|+..++||++.+.++..|.. ...|+.++|.|+|.-|++|+.|++.++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999995567788999999999999999999999984 46799999999999999999999999999999
Q ss_pred CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004327 638 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 638 ~~~i~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg 714 (761)
...+..+.. ...+|++++|+..|++|++|. |.++.+||.-.+ +.+..+.+|++.|.++..+|||..+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 887777763 345899999999999999988 889999999776 77888889999999999999999999999999
Q ss_pred cEEEEE
Q 004327 715 TLELWN 720 (761)
Q Consensus 715 ~I~IwD 720 (761)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-32 Score=302.53 Aligned_cols=252 Identities=23% Similarity=0.430 Sum_probs=220.9
Q ss_pred CCcccccCCeeeccccCCceeeccCCCC---------------CCCCCccccceecCCCceeEEEEEecCCCCCeEEEEE
Q 004327 423 PNQLTDMDRFVDDGSLDDNVESFLSPDD---------------ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF 487 (761)
Q Consensus 423 ~~~l~~~~~~i~~gs~d~~v~~~~s~~~---------------~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~laf 487 (761)
...+.+...++++|-.|..|++|..... ....|......|..++. ..+.+.+|.++|+.+.|
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~---~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG---TSRTLYGHSGPVYGCSF 459 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc---eeEEeecCCCceeeeee
Confidence 3445666678999999999999944320 11122233344433333 34558999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe
Q 004327 488 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 567 (761)
Q Consensus 488 Spdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V 567 (761)
+|+.++|++++.|++|++|++.+..++..+.+|..+|+++.|+|.|-||||++.|++.++|..+.. .+++.+.+|-+.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV 538 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDV 538 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 4799999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~ 646 (761)
.|+.|||+. .++++|+.|.+|++||+.+|..++.|.. .++|.+++|+|+|.+|++|+.||.|.+||+.+++.+..+.+
T Consensus 539 ~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 539 DCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred ceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 999999995 6677999999999999999999999984 46799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 647 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 647 h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
|++.|.++.|+.||..|++++ |+.|++||+...
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999 999999999753
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=296.06 Aligned_cols=289 Identities=21% Similarity=0.324 Sum_probs=260.3
Q ss_pred eEEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 469 FTEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafS-pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
+..++.+-|..+.|.+|+|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|++|+.|.++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 34566677888999999885 57789999999999999998887766 78899999999996667889999999999999
Q ss_pred EecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEE-------ecCCCeeEEEE
Q 004327 548 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRF 614 (761)
Q Consensus 548 WDl~t~~---~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~---~~~-------~~~~~i~~l~f 614 (761)
|.++++. .++....+|.+.|.+++++..+..+|++++.|++|++|++...+.. ..+ .+...|+++++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 9885432 2455678999999999999999999999999999999999862211 111 24567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 615 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 615 spd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
+|+...+++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |.+|+||.+.+. .|+.++.+|..
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~ 548 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTS 548 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccc
Confidence 99999999999999999999999999999999999999999999999999999 999999999887 89999999999
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|..+.|-.++..|++++.||-|+||+++++.++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999 8899999999999999999999999999999995
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-31 Score=272.05 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=262.4
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEc
Q 004327 429 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl 508 (761)
..+++++|+-|+.-. +|+..++. ....+.+|++.|+|+.|+.||.+||||+-+|.|+||..
T Consensus 75 ~~~l~aTGGgDD~Af----------------lW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAF----------------LWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEecCCCceEE----------------EEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 456777777666544 45555554 45668899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 509 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 509 ~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
.++.....+...-..|.-+.|+|.+.+|+.|+.||.|.+|.+.+.. ..+.+.+|..++++=.|.|+|++++ ++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEE-EEecCce
Confidence 9999998887667789999999999999999999999999999864 4788999999999999999986655 8889999
Q ss_pred EEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------CCCCCEEEEEEcC
Q 004327 589 IRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVCWNT 658 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~--~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~--------~h~~~I~sl~~sp 658 (761)
|++||+.++.++..+.. .....++.++..+..++.|..++.+++....+++.+.... .+...+.|+.+.|
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999999998887763 3457888899898899999999999999999998887766 3444455555544
Q ss_pred ---CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCC
Q 004327 659 ---SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 733 (761)
Q Consensus 659 ---dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~ 733 (761)
.=.+.++|+ ||+|.|||+... .++..-.|...|..+.|.+ ..+|++++.+|.|++||.++|.++ ++.+|.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred cccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence 556778888 999999999874 3334445778899999999 788999999999999999999988 888999
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 734 KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 734 ~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..|.+++++|+.++++|+|.|++.+||+
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999985
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-30 Score=282.26 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=253.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCc
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDY 555 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-G~I~VWDl~t~~~ 555 (761)
.....|+|++|++.-++||+|-..|...+|.+....+++.+.-....|..+.|+..|++|+.|+.. |.+.||++.+..+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 344789999999999999999999999999999999999998877899999999999999998865 8999999998776
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwD 634 (761)
+....+|...+++++++||| .++++|++||.|+|||...+-|..+|. +...++.+.|+..++.+++.+-||+|+.||
T Consensus 343 -VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 -VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred -eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 66778899999999999996 677799999999999999999999997 556799999999999999999999999999
Q ss_pred CCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 635 VETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 635 l~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
+...+..+++... .....|++.+|.|.++++|+ |. .|+||++.++ ..+..+.+|+++|.+++|+|++..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999988753 33567889999999999999 66 8999999998 88899999999999999999999999999
Q ss_pred cCCcEEEEECCCC-cEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 712 CYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 712 ~dg~I~IwDl~~~-~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|.+|++||+-.. ..+....+...+.+++|+|||+-|+++..||.|.|||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999998654 3344556788899999999999999999999999997
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.3e-31 Score=291.68 Aligned_cols=302 Identities=21% Similarity=0.330 Sum_probs=244.5
Q ss_pred CCCccccceecCCCceeEEEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC
Q 004327 453 PRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 531 (761)
Q Consensus 453 ~~d~~~r~~d~~~g~~~~~v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp 531 (761)
.+....++|....+ ..++.++. |+++|.-++|+|.+.+|++|+.|+.|+|||+..+.+...|++|.+.|.++.|+|
T Consensus 81 ~rs~llrv~~L~tg---k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTG---KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHP 157 (775)
T ss_pred eccceEEEEEcccc---hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCC
Confidence 34556677777777 45667777 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-
Q 004327 532 SLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG- 608 (761)
Q Consensus 532 dg~--~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~- 608 (761)
+-. .|++|..|++|++||+.+...++.+...|.+.|++++|.+++..++ +++.|..|.+||+...+..++......
T Consensus 158 ~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 158 HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhhe
Confidence 754 5899999999999999976666888899999999999999976555 888899999999865433222110000
Q ss_pred --------------------------------------------------------------------------------
Q 004327 609 -------------------------------------------------------------------------------- 608 (761)
Q Consensus 609 -------------------------------------------------------------------------------- 608 (761)
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV 316 (775)
T ss_pred eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence
Q ss_pred ---------eeEEEE------------------------------------------ecCCCEEEEEEcCCeEEEEECCC
Q 004327 609 ---------ATQMRF------------------------------------------QPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 609 ---------i~~l~f------------------------------------------spd~~~Llags~dg~I~IwDl~t 637 (761)
|.+++| ...|..|++++.|..+++|.+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 001111 01122455555566666664321
Q ss_pred Ce----------------------------------------------------EEE----EEcCCCCCEEEEEEcCCCC
Q 004327 638 QV----------------------------------------------------CRL----KLQGHKNQVHSVCWNTSGE 661 (761)
Q Consensus 638 ~~----------------------------------------------------~i~----~l~~h~~~I~sl~~spdg~ 661 (761)
+. .+. ....|...|+|++++|+.+
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk 476 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK 476 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence 10 000 1124778899999999999
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEE
Q 004327 662 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSL 739 (761)
Q Consensus 662 ~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~sl 739 (761)
+|++|+ |.+.+||++... .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+
T Consensus 477 LiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 477 LIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred eEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 999999 999999999854 788899999999999999999999999999999999999999999 889999999999
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 004327 740 AASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 740 afspdg~~LaSgs~DG~I~IWd 761 (761)
.|-.+++.|++|+.||.|+||+
T Consensus 554 ~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999999999996
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=7.1e-31 Score=289.71 Aligned_cols=281 Identities=20% Similarity=0.389 Sum_probs=255.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
-.+.+|...|.+++||.|...+++|+ .+.|+||+.++.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888776 579999999999999999654 899999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cee--------eeEEecCCCeeEEEEecCCC
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 619 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-----~~~--------~~~~~~~~~i~~l~fspd~~ 619 (761)
... +.+...|.+.|++++..|++..++ +|+.|.+|++||..- +.. .+++.....+.|+.++||+.
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 664 677789999999999999976555 999999999999741 111 14555678899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 620 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
+|+++--|++|+||-+++-+....+.+|.-+|.|+.++||++++++|+ |..|+||-+.-| .|-..+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999777 8888999999999999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|-|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999888777 8899999999999999999999999999999995
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=254.51 Aligned_cols=281 Identities=18% Similarity=0.351 Sum_probs=242.5
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+...+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEEe-cCCCeeEEEEecCCCEEEEEEc
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~--~~~~~~~-~~~~i~~l~fspd~~~Llags~ 626 (761)
+++++. ++.+.+|.+.|+.+.|+.+ ..++++|+.|..+++||.++. +++..+. ....|.++.+.. ..|++|+.
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred cccCee-eeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 999885 8999999999999999987 578889999999999999864 4455443 335677777654 57999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc--eEEEEEeCC
Q 004327 627 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPT 703 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~--I~sl~fspd 703 (761)
||+++.||++.+.....+.+ .+|+|++|++|+...++++ |+++++.|-.++ +.+..+.+|.+. -..+++...
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 99999999999987766654 4899999999999999888 999999999988 677777777654 346778888
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEE-EEccCCCC-eeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 704 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..++++|++||.|++||+.+...+ .+..+... |.+++++|.-..|+++...+ +.+|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 889999999999999999999888 55566666 89999999887777776444 4444
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=3.9e-32 Score=282.63 Aligned_cols=268 Identities=24% Similarity=0.420 Sum_probs=230.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
+-+.+|+..+.+.+| .|..|....++.+|..+|.++.|++++.++++|+.+|.|++|+..-
T Consensus 109 RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred ceeEeecccccEEEe-------------------cCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 456777777777777 4566666677889999999999999999999999999999998754
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
.........|...|++++|+|+...|++|+.||+|+|||....+. .+.+.+|.-.|.+++|+|. ..++++++.|..|+
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~-kgLiasgskDnlVK 247 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVK 247 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCc-cceeEEccCCceeE
Confidence 333333344559999999999999999999999999999987664 6677999999999999998 56888999999999
Q ss_pred EEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-
Q 004327 591 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS- 667 (761)
Q Consensus 591 vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs- 667 (761)
+||.+++.|+.++.. ...|..+.|++++++|++++.|..+++||+++.+.+..+.+|+..|+++.|+|-. .+|++++
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999999999988764 4568999999999999999999999999999999999999999999999999965 4566666
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 668 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
||.|..|.+.... .....-..|...|++++|+|-|..|++|+.|.++++|..
T Consensus 328 Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999997432 222233568899999999999999999999999999975
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.2e-32 Score=274.13 Aligned_cols=273 Identities=21% Similarity=0.385 Sum_probs=235.7
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
..+..-....+.|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.| +.+.|++|+.|.+|+|||
T Consensus 188 ~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 188 QRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWD 263 (499)
T ss_pred eeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEe
Confidence 3444444566789999985 558999999999999999999999999999999999999 456999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-cCCCeeEEEEecCCCEEEEEE
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~---~~~~-~~~~i~~l~fspd~~~Llags 625 (761)
+++++ ++.++..|...|..+.|+ +.++++|+.|.+|.+||+.....+ +.+. +...|..+.|+. +++++++
T Consensus 264 v~tge-~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS 337 (499)
T KOG0281|consen 264 VNTGE-PLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 337 (499)
T ss_pred ccCCc-hhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec
Confidence 99977 589999999999999998 457889999999999999865422 2222 335577777765 5999999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 626 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
.|.+|++|++.+.+.+.++.+|...|-|+.+ .++++++|+ |.+|++||+..+ .|+..+.+|+.-|.++.| +.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~ 410 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DN 410 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cC
Confidence 9999999999999999999999999998876 588999999 999999999988 899999999999999999 45
Q ss_pred CEEEEEEcCCcEEEEECCCCcEE----------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 705 PSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~----------~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.|++|+.||+|+|||+..+.-. ++..|.+.|..+.|. ...|++++.|.+|-|||
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 67999999999999999765421 566899999999985 56799999999999997
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=268.81 Aligned_cols=272 Identities=25% Similarity=0.466 Sum_probs=241.1
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 426 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 426 l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
+.+...++++.+.|.++++| |..++. ....+++|++.|.+|+|+..|++||+++.|-.+.+
T Consensus 116 ~hp~~~~v~~as~d~tikv~----------------D~~tg~---~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVF----------------DTETGE---LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred eccCceEEEEecCCceEEEE----------------Eccchh---hhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34444566666666666666 444443 36789999999999999999999999999999999
Q ss_pred EEcCC-CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 506 WCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 506 Wdl~t-~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
||.++ .++++.+.+|+..|.+++|-|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..++.+.|| .++++|+
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DG-ti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDG-TIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCe-eEEEecC
Confidence 99987 67788888999999999999999999999999999999999865 699999999999999999885 7899999
Q ss_pred CCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCC---------------CEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 004327 585 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL---------------GRILAAAIENYISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~---------------~~Llags~dg~I~IwDl~t~~~i~~l~~h~ 648 (761)
.|.+|++|-+.++.+...+. ++..+.+++|.|.. .++++++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999997776665 34567888887742 378888899999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 649 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.+|..++|+|.|+||+++. |++++|||+.+. .|.+.+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999 889999999887 899999999999999999999999999999999999974
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=278.85 Aligned_cols=281 Identities=22% Similarity=0.405 Sum_probs=255.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
.+..|+..|.|+.|+|...+++++-.+|.|.|||.++...++.+.-...+|.+..|-...+++++|+.|..|+||+..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 45568999999999999999999999999999999999999999989999999999999999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEecCCC-eeEEEEec-CCCEEEEEEcCCeE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQP-RLGRILAAAIENYI 630 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~~~~-i~~l~fsp-d~~~Llags~dg~I 630 (761)
+. +..|..|.+.|.|++.||...++| ++++|-.|++||.+. ..+..+|..+.. |.+++|.| |.+.+++++-|++|
T Consensus 88 ek-V~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 88 EK-VKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred ee-eEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 75 899999999999999999976555 999999999999986 467777876554 89999999 55779999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 631 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~h~~~I~sl~~spdg--~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
+||.+....+..++.+|...|+|++|-+.| .||++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcEE
Confidence 999999999999999999999999998755 5899999 779999999887 8999999999999999999999999
Q ss_pred EEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 708 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
++|+.||+|+||+..+.+.. ++.-.-..|+|++-.+.++.++.|.+.|.|.|
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999888777 55556678999999999899999999988764
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=251.07 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=250.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE--EeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 549 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~--~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWD 549 (761)
+.+.+|...|.+++|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5577899999999999999999999999999999998876554 3478999999999988 567899999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
++.++....+.. ++.-..+.|+|+|++++ .++.|..|.+.|.++.+..........+..++|+.+++.++.....|.
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999876443332 33345688999976555 778889999999999999998888888999999988888888888899
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
|.|......+++..+..|.....||.|+|+|+||++|+ |..+.+||+..- .|+..+..++-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999755 88899999999999999999999999
Q ss_pred EEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC---------CeEEEc
Q 004327 709 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 760 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D---------G~I~IW 760 (761)
++++|..|-|=++.+|..+.-..++++...++|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 567775
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-29 Score=249.57 Aligned_cols=281 Identities=19% Similarity=0.250 Sum_probs=239.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
.+.+|..+|+-+.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|+....+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEECCC-------CeeeeEEe-cCCCeeEEEEecCCCEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFK-CQSGATQMRFQPRLGRI 621 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs----~Dg~I~vWDl~t-------~~~~~~~~-~~~~i~~l~fspd~~~L 621 (761)
+. +..++ ...+|..+.|+++|+.++++.. ..+.|.++|++. .+++..+. ....++.+.|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 85 55544 5678999999999877776653 357899999983 34344443 45679999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 622 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 622 lags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+.++||+.+- .++.++. ...+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999998 55556677999999999999999999999 999999999876 6666665 467899999
Q ss_pred EeCCCCEEEEEEcCCcE--EEEECCCCc------------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 700 FHPTFPSLLVIGCYETL--ELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I--~IwDl~~~~------------~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
++|...+++.|+..... .--+.+.++ .+ .+.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999888888765533 222333332 22 667899999999999999999999999999973
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=260.46 Aligned_cols=285 Identities=19% Similarity=0.247 Sum_probs=246.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
.+..|..|+++|++|+.+|+.+++|||+.|....||++.++.....+.+|+..|+++.|+.+|.+||||.-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
.++.. ...+...-..|.=+.|||.+ .+|+.|+.||.|..|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98775 44454556778889999974 677799999999999999876666666 4456899999999999999999999
Q ss_pred EEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee--------cCC---CceE
Q 004327 630 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTG---NKFH 696 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~--------~~~---~~I~ 696 (761)
|++||+.++.++..+.. ......++.++..+..++.|+ ++.+++-+..++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 234677899999999999998 889998888777 3333333 222 3345
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 697 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 697 sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566677888999999999999999998888889999999999998 78999999999999997
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-28 Score=252.19 Aligned_cols=266 Identities=30% Similarity=0.546 Sum_probs=231.5
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.++.+.+|. ...+. ....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 22 ~~l~~~~~~g~i~i~~----------------~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 22 KLLATGSGDGTIKVWD----------------LETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CEEEEeecCcEEEEEE----------------eeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 4666676677777662 22221 3455778999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.+++|+|+ +.++++++.|+.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEE
Confidence 88888898999999999999998889988889999999998655 36677789999999999998 46676777799999
Q ss_pred EEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 004327 591 YWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 591 vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D 668 (761)
+||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||+++++.+..+..|...|.+++|++++.++++++ |
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999888887776544 799999999999999999999999999999998888888999999999999999999998 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
+.|++||+.++ ..+..+..+...+.+++|++++.+|++++.|+.|++|+
T Consensus 241 ~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999876 56666778888999999999999999999999999996
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-29 Score=272.88 Aligned_cols=274 Identities=20% Similarity=0.288 Sum_probs=243.2
Q ss_pred CCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 004327 423 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 502 (761)
Q Consensus 423 ~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~ 502 (761)
+..+++.+.++.++-..+++++|.. .+-..++.+.-..-+|.++.|-+..+++++|+.|..
T Consensus 18 sVd~HPtePw~la~LynG~V~IWny-------------------etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEec-------------------ccceeeeeeeecccchhhheeeeccceEEEecCCce
Confidence 3455677788888888888888822 223467777778889999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 004327 503 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 582 (761)
Q Consensus 503 I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llas 582 (761)
|+||+..+++.+..|..|.+.|.||+.+|.-.+++++|.|-+|++||.+..-.+..+|.+|...|++++|+|.+..-|++
T Consensus 79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 004327 583 CDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 583 gs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~--~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd 659 (761)
|+-|++|+||.+....+..++. +..+|+|++|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 9999999999999888888887 45679999998854 58999999999999999999999999999999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 004327 660 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 718 (761)
Q Consensus 660 g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 718 (761)
-.+|++|+ ||+++||+..+- +....+.-....++|++-.+.+..+++|..+|.|.+
T Consensus 239 lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999 999999998775 445556666788999999998888888877775543
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.9e-31 Score=264.65 Aligned_cols=280 Identities=23% Similarity=0.357 Sum_probs=245.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec--------cCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~--------~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
+...-+.|..|+|||.||++|+.||.|.|||..+|+..+.++ -+..+|.|+.|+.|...|++|+-||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445568899999999999999999999999999988765543 478899999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~d 627 (761)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++.-+++|++++.++.+. .|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998874444458999999999999977666 89999999999999999999998654 48899999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEee---cCCCceEEEEE
Q 004327 628 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVF 700 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~--h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~---~~~~~I~sl~f 700 (761)
|+|+||+.++.+|+.+|+. ...+|+++..-|.+ ..+++|. .++|+|.++.. ..+..+. ..++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 44578888777754 5677777 88999999864 4455543 34567889999
Q ss_pred eCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 701 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 701 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|.|.++++.+.|+.++.|.+.+|+.. ++..|+..|..++-+|..+.||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999887 7778999999999999999999999999999996
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.4e-29 Score=275.61 Aligned_cols=300 Identities=20% Similarity=0.270 Sum_probs=248.8
Q ss_pred CccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC
Q 004327 455 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 534 (761)
Q Consensus 455 d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~ 534 (761)
|..+++|+..++ .....+.+|...|+++.|+..|..||+|+.|+.|.|||+-...-...+.+|.+.|+..-|..+.+
T Consensus 86 DGsVqif~~~s~---~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~ 162 (888)
T KOG0306|consen 86 DGSVQIFSLESE---EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS 162 (888)
T ss_pred CceEEeeccCCC---ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe
Confidence 344455555544 45667889999999999999999999999999999999988777888888888888888887777
Q ss_pred EEEEEeCCCeEEEEecCCCCc-----------------------------------------------------------
Q 004327 535 RLATSSADRTVRVWDTENPDY----------------------------------------------------------- 555 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~----------------------------------------------------------- 555 (761)
+|++++.|+.|++||+++..+
T Consensus 163 ~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 163 FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred EEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 888888888888888761100
Q ss_pred --------------------------------------------------------------------------------
Q 004327 556 -------------------------------------------------------------------------------- 555 (761)
Q Consensus 556 -------------------------------------------------------------------------------- 555 (761)
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence
Q ss_pred ------------e------------------------------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004327 556 ------------S------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 556 ------------~------------------------------i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD 593 (761)
. ...+.+|...|.+++++.+ ..++++|+ .+.|++|+
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecC-CCcEEEEE
Confidence 0 0112356677888888876 34554554 67899999
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 004327 594 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 672 (761)
Q Consensus 594 l~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~ 672 (761)
..+.+|++++.+. .+.+..|.|.++++++|...|.+.+||+.+...+.++.+|.+.|++++.+||++.+++++ |.+|+
T Consensus 401 ~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 401 RDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence 9999999999875 889999999999999999999999999999999989999999999999999999999999 99999
Q ss_pred EEECCCC-----CCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEe
Q 004327 673 VWSIGSG-----SKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 742 (761)
Q Consensus 673 IWdl~s~-----~~~~~i~----~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafs 742 (761)
+||+.-. ...+.+. ..-.-...|.|+.+|||+++|+++--|.+|+||-+++-+.. .+.+|.-+|.|+.++
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 9998521 1111111 11123577999999999999999999999999999998877 899999999999999
Q ss_pred CCCCEEEEEECCCeEEEc
Q 004327 743 TVNGMVASASHDKCVKIW 760 (761)
Q Consensus 743 pdg~~LaSgs~DG~I~IW 760 (761)
||+++++|||.|..|+||
T Consensus 560 ~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIW 577 (888)
T ss_pred CCcCeEEeccCCCceEEe
Confidence 999999999999999999
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.1e-30 Score=253.54 Aligned_cols=278 Identities=21% Similarity=0.270 Sum_probs=246.3
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 475 IPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 475 l~~H~~~V~~lafSp---dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
-.+|+.+|..++|+| +|-+|++++.|+.-.+-+-+++.-+-+|.+|.+.|+...++.+...-++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 469999999999986 88899999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE-ecCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 552 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 552 t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~-~~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
++.. +..|. |+.-|.+++|+.|.++++ +|+.+..++|||++..+ ....+ .+.+.|..+.|....+.|++.+.|+.
T Consensus 90 tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 90 TGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 8875 55554 888999999999976555 99999999999998643 22333 35677999999999899999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
|++||.++++.+.++. .+.+|+++.++++|++|.++..+.|++||..+. ..+..+. -...|.+..++|+...+++
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFVA 241 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEEe
Confidence 9999999999999887 678899999999999999988889999999876 4444443 3456889999999999999
Q ss_pred EEcCCcEEEEECCCCcEE-E-EccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 710 IGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~-~-l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
|+.|..++.||..++..+ . ..+|.++|.|+.|+|||...++|+.||+|+||
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999999999999999988 3 37999999999999999999999999999999
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.5e-29 Score=280.62 Aligned_cols=276 Identities=26% Similarity=0.431 Sum_probs=233.5
Q ss_pred cccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 004327 425 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 504 (761)
Q Consensus 425 ~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~ 504 (761)
.+....++++.++.+..+..|.. ..... .....+.+|...|.+++|+||++++++++.|++|+
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~----------------~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKL----------------EGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeec----------------ccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 33444456777777777777633 11111 24455689999999999999999999999999999
Q ss_pred EEEc-CCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 004327 505 LWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 583 (761)
Q Consensus 505 VWdl-~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasg 583 (761)
|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||++++. ++..+.+|...|++++|++++. +++++
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~l~s~ 306 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-LLVSA 306 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-EEEEc
Confidence 9999 5668999999999999999999999999999999999999999855 5899999999999999999975 55577
Q ss_pred eCCCcEEEEECCCCe--eeeEEecCC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC---EEEEE
Q 004327 584 DNNSEIRYWSINNGS--CAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ---VHSVC 655 (761)
Q Consensus 584 s~Dg~I~vWDl~t~~--~~~~~~~~~---~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~---I~sl~ 655 (761)
+.|+.|++||+.++. ++..+.... .++++.|+|++.++++++.|+.+++||+..+.+...+.+|... +.+..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 889999999999998 455554322 4799999999999999999999999999999999999998875 34455
Q ss_pred EcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCcEEEEECC
Q 004327 656 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 722 (761)
Q Consensus 656 ~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~ 722 (761)
+++.+.++++++ |+.|++||+.++ ..+..+.+| ...+..+.+++..+++++.+ .|+.|++|...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 678999999999 999999999886 666777778 88899999999999999998 67789999754
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=266.84 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=246.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345678999999999999998999999999999999987766 678888889999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg 628 (761)
+++.... ..++.+|.+.|+++.|.-.... +++|+.|.+|++||+....|.+.+-....+..|+.. ...++++-.|+
T Consensus 247 nvd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 247 NVDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence 9998664 7899999999999999876444 779999999999999999998888776777777776 35577788899
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC----CCceEEEEEeCC
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPT 703 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~----~~~I~sl~fspd 703 (761)
.|++||+++..++.....+. .|+++..++++..|.+++ |+++.++|+++. ...+.+... ...++.++|||+
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCC
Confidence 99999999999999988765 999999999999999989 999999999986 444444322 234788999999
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEE-EEcc-CC-CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 704 FPSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~-~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999988 3332 22 2699999999999999999999999994
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-29 Score=276.89 Aligned_cols=282 Identities=21% Similarity=0.369 Sum_probs=248.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
+...+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|..|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEE
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 633 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd~~~Llags~dg~I~Iw 633 (761)
++.++.+|-+.|..+.||+.-. .++++++|-+|+||+..+++++..+..+.. |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999865 455999999999999999999999986654 8999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004327 634 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 683 (761)
Q Consensus 634 Dl~t~-----------------------------~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~ 683 (761)
|+..- ...+.+.+|...|+.++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 97521 12345789999999999999999999999 77999999976432 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 684 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 684 ~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.+.+..+|.+.|.++.|+|..+.|++.+.|++|+|||+...+.+ ++....+..+.++-+|..+++++|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56677899999999999999999999999999999999998888 6666678899999999998887665444 5554
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=257.66 Aligned_cols=244 Identities=22% Similarity=0.449 Sum_probs=220.9
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
.+....+.+|.++|.||++.|.+.+|++|+.|++|+|||+.++.. ..++.+|...|..+++++...++| +|+.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 455667889999999999999999999999999999999999774 778999999999999999865555 889999999
Q ss_pred EEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 004327 591 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 591 vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D 668 (761)
.||++..+.++.+.. -..|.|+..+|.-..|++++.|..++|||+++...+..+.+|..+|.++.+.|..--+++|+ |
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999887764 46799999999999999999999999999999999999999999999999999888888999 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCE
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 747 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~ 747 (761)
++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 99999999988 6777888899999999999999877776666 6999999999877 778999999999987665 8
Q ss_pred EEEEECCCeEEEcC
Q 004327 748 VASASHDKCVKIWK 761 (761)
Q Consensus 748 LaSgs~DG~I~IWd 761 (761)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 89999999999997
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-27 Score=241.01 Aligned_cols=284 Identities=22% Similarity=0.307 Sum_probs=237.5
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC--CCeEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVR 546 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~--DG~I~ 546 (761)
++..+.+..-.+.|+++.|+++|.+|++++.|.+|+|||..+++.+.++..+.-.|..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566677888999999999999999999999999999999999999998889999999887777777776 88999
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~ 626 (761)
..++.+.++ ++.|.||...|.+|+.+|-+ ..+++++.|++|++||++..++...+.. ..-..++|+|.|-.++++..
T Consensus 84 yLsl~dNky-lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 84 YLSLHDNKY-LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEeecCce-EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecC
Confidence 999998775 99999999999999999997 5666999999999999998888777664 34456899999888888887
Q ss_pred CCeEEEEECCCC--eEEEEEc---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC---ceEE
Q 004327 627 ENYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHS 697 (761)
Q Consensus 627 dg~I~IwDl~t~--~~i~~l~---~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~---~I~s 697 (761)
.+.|++||++.- .+..++. +.....+.|.|+|||++|+.+. .+.+++.|.-+|. ....+..+.. --..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCccee
Confidence 779999999863 3333333 3466789999999999999888 7899999998884 4444444332 3368
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 698 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 698 l~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.+|+||+++|++|+.||+|.+|+++++..+ .+.+ +.+++.++.|+|.-.++|+++ ..+.+|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 899999999999999999999999999888 5665 789999999999877777665 456666
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.8e-30 Score=261.04 Aligned_cols=246 Identities=20% Similarity=0.421 Sum_probs=212.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
..+.+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.++-+|.+.|..+.|+ +.++++++.|.+|.||
T Consensus 227 ~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVW 302 (499)
T ss_pred HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEE
Confidence 44677899999999999995 5699999999999999999999999999999999999997 4599999999999999
Q ss_pred ecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEE
Q 004327 549 DTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 549 Dl~t~~~--~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags 625 (761)
|+..+.. ..+.+.||...|+.+.|+ ..++++++.|.+|++|++.++++++++..+ .+|.|+.+ .++.+++|+
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC
Confidence 9987652 235678999999999998 348889999999999999999999998744 45666655 457888899
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc------eeEEEeecCCCceEEE
Q 004327 626 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSC 698 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~------~~i~~l~~~~~~I~sl 698 (761)
.|.+|++||++.|.++..+++|+.-|.|+.|+ .+.|++|. ||+|+|||+..+... .|+..+..|.+.|..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 99999999999999999999999999999994 56788888 999999999875432 3666677788899999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.|. ...|++++.|.+|.|||+.++...
T Consensus 456 QFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 456 QFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 994 456899999999999999877654
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.6e-28 Score=249.39 Aligned_cols=278 Identities=22% Similarity=0.329 Sum_probs=235.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC---EEEEEeCCCeEEEEecCCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSADRTVRVWDTENP 553 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~---~Lasgs~DG~I~VWDl~t~ 553 (761)
-|.+.|.++... +++|++|++||.++|||. .|+....+.+|.++|.+++|.-.+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888877 679999999999999997 5688889999999999998855333 5999999999999999876
Q ss_pred Ccee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-------------------------eeeeEEe-
Q 004327 554 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 604 (761)
Q Consensus 554 ~~~i---~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-------------------------~~~~~~~- 604 (761)
...+ ....||...|-+++..+++ ..|++|+.|..|+||+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5432 3445999999999999996 56779999999999993211 1111222
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004327 605 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 683 (761)
Q Consensus 605 ~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~ 683 (761)
+..+|.++.|++ ...+++++.|.+|++||+.++.++.++. ....++|+.++|..++|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 335688899988 5889999999999999999999888877 457899999999999999999 9999999999987777
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCcEEEEECCCCc-EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 684 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 684 ~i~~l~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~~~~-~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999998765 6778889999999999877 44 888999999999996 56799999999999997
Q ss_pred C
Q 004327 761 K 761 (761)
Q Consensus 761 d 761 (761)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=236.79 Aligned_cols=269 Identities=22% Similarity=0.390 Sum_probs=217.3
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
.++++++.|..+++| +...+..+.+...+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-.
T Consensus 28 ~ilAscg~Dk~vriw----------------~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 28 VILASCGTDKAVRIW----------------STSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred eEEEeecCCceEEEE----------------ecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 467777777666666 33334445555555 4799999999999999999999999999999765
Q ss_pred --CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 510 --SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 510 --t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~--~~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
.++++.++++|...|.|++|+++|.+||+|+.|+.|-||.+..+. .+...+..|...|..+.|||. ..+|++++.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dlL~S~SY 170 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSY 170 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-cceeEEecc
Confidence 457889999999999999999999999999999999999998443 356788999999999999998 468889999
Q ss_pred CCcEEEEECC-C--CeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC
Q 004327 586 NSEIRYWSIN-N--GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 661 (761)
Q Consensus 586 Dg~I~vWDl~-t--~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~ 661 (761)
|.+|++|+-. . ..++..+..+ ..+.+++|++.|.++++++.|++|+||-..+.-. ..|...++.+.|. ..
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~ 244 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NG 244 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--cc
Confidence 9999999876 2 4566666644 4789999999999999999999999998663211 1278899999998 44
Q ss_pred EEEEEe-CCeEEEEECCCCCCc---e-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCcEEEEECC
Q 004327 662 YLASVS-DELVRVWSIGSGSKG---E-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 662 ~Lasgs-Dg~I~IWdl~s~~~~---~-~i~~l~~~~~~I~sl~fspd-g~~L~sgs~dg~I~IwDl~ 722 (761)
.|++++ |+.|++|........ . ....-..|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 677766 999999987643111 1 11233467889999999995 6789999999999999864
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=256.99 Aligned_cols=291 Identities=17% Similarity=0.254 Sum_probs=233.9
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE----EEEe-ccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~----~~~l-~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
+......+.+|+..|.++++.|.|-.|++|+.|-+|++||+..... .+.+ ......|.++.|++.+..|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3445567899999999999999999999999999999999875322 1222 2344579999999999999999888
Q ss_pred CeEEEEecCCCCce-----------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecC----
Q 004327 543 RTVRVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ---- 606 (761)
Q Consensus 543 G~I~VWDl~t~~~~-----------i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~~~~---- 606 (761)
..++|+|-+..... +...++|...++|.+|+|.....|++|+.||++++||+++.+ ...+++..
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 89999997643210 123468999999999999999999999999999999998643 33444421
Q ss_pred --CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 607 --SGATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 607 --~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~---~i~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
-.++.++|++++..|++|+.||.|.+||..... ..+.-..|.. .|+||.|++||++|++-+ |+++++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 247899999999999999999999999986542 2333456777 899999999999999988 99999999997
Q ss_pred CCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEE
Q 004327 679 GSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 679 ~~~~~~i~~l~~--~~~~I~sl~fspdg~~L~sgs~------dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~La 749 (761)
.+ +++....+ ...+-+.|+|+|+.+.|++|++ .+.+++||..+...+ .+......|..+.|+|.-+.|+
T Consensus 396 ~k--kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 396 FK--KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cc--cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 65 44444433 3445678999999999998865 357999999888777 5556678899999999988899
Q ss_pred EEECCCeEEEc
Q 004327 750 SASHDKCVKIW 760 (761)
Q Consensus 750 Sgs~DG~I~IW 760 (761)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-28 Score=239.95 Aligned_cols=276 Identities=21% Similarity=0.367 Sum_probs=228.8
Q ss_pred EEEEEcC--CCCEEEEEE-------CCCeEEEEEcCCCeEEEEec--cCCcceEEEEEcCC-CCEEEEEeCCCeEEEEec
Q 004327 483 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 550 (761)
Q Consensus 483 ~~lafSp--dg~~Lasgs-------~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl 550 (761)
+++.||| +++ ||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++ .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5688998 443 33332 36899999986444333332 34577999999995 567889999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecC-CCEEEEEEcCC
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN 628 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd-~~~Llags~dg 628 (761)
..+..++..++.|..+|.++.|++..+..+++++.|++|++|+......+.++..+ ..|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999988888889999999999999999999988854 45888999995 56777888899
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P 705 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~ 705 (761)
.+++||++..-....+..|...|.|+.|+... ..|++++ |+.|++||++.-. ..+.++.+|.-.|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 99999999764444588899999999999855 5667777 9999999999754 5688889999999999999976 5
Q ss_pred EEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEcC
Q 004327 706 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 761 (761)
Q Consensus 706 ~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspd-g~~LaSgs~DG~I~IWd 761 (761)
.|++++.|-+++|||....... +...|...|..+.|++- ..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6788888999999998755443 66688999999999975 56999999999999996
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=245.28 Aligned_cols=287 Identities=25% Similarity=0.385 Sum_probs=239.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC------------------CeEEEEeccCCcceEEEEEcCC
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 532 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t------------------~~~~~~l~~h~~~V~~v~fspd 532 (761)
+...+..|..++.+.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566789999999999999999999999999999999861 1246788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----cCC
Q 004327 533 LSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS 607 (761)
Q Consensus 533 g~~Lasgs~DG~I~VWDl~t~~~~i-~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----~~~ 607 (761)
..+|++++.|++|++||+....... ........+|.++.|+|.|+.++ .|....++++||+++..|...-. +.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999998644211 11222456899999999986555 77778899999999988765443 446
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004327 608 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~-h~-~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~ 684 (761)
.|+++.+++.++.+++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++ ++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 799999999999999999999999999999999888754 54 4789999999999999988 999999999988 77
Q ss_pred EEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 685 IHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 685 i~~l~~~~~-----~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
+.++.+.+. --+...|.....|++.-.+. +.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|+.|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 777765421 12344677777777766653 48999999988766 44589999999999999999999999999
Q ss_pred EEEcC
Q 004327 757 VKIWK 761 (761)
Q Consensus 757 I~IWd 761 (761)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=271.54 Aligned_cols=248 Identities=21% Similarity=0.324 Sum_probs=206.7
Q ss_pred eEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC--------------------------------C----
Q 004327 469 FTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F---- 511 (761)
Q Consensus 469 ~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t--------------------------------~---- 511 (761)
+.....+. +|.+.|+|+.||+||+|||+||.|+.|+||.+.. .
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 34455566 9999999999999999999999999999997543 0
Q ss_pred ------------------------eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe
Q 004327 512 ------------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 567 (761)
Q Consensus 512 ------------------------~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V 567 (761)
+++..|.+|.+.|.+|.|+.+ .+|++++.|++|++|++.... ++..|. |.+.|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfV 412 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFV 412 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCee
Confidence 112235689999999999965 589999999999999999755 577776 99999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG- 646 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~- 646 (761)
+|++|+|.++.+|++|+-||.|+||+|...+.+....+..-|++++|.|+|...++|+.+|.+++|+....+....+.-
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999999999999999999999999999998888889999999999999999999999999999998776654321
Q ss_pred -C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCc
Q 004327 647 -H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYET 715 (761)
Q Consensus 647 -h------~~~I~sl~~spdg--~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~--~~I~sl~fspdg~~L~sgs~dg~ 715 (761)
| ...|+.+.|.|.. ++|++..|..|+|||.++. ..+..+.+.. ..-....|+.||++|++++.|..
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 1 2279999998754 3677666999999999765 4444444332 33456789999999999999999
Q ss_pred EEEEECC
Q 004327 716 LELWNMT 722 (761)
Q Consensus 716 I~IwDl~ 722 (761)
|+||++.
T Consensus 570 VYiW~~~ 576 (712)
T KOG0283|consen 570 VYIWKND 576 (712)
T ss_pred EEEEeCC
Confidence 9999973
No 58
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=264.26 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.8
Q ss_pred EECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCc-------eeEEeecCCCCeE
Q 004327 497 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 568 (761)
Q Consensus 497 gs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~-------~i~~~~~h~~~V~ 568 (761)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 004327 569 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 569 sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~ 648 (761)
+++|+|++..++++++.|+.|+|||++++..+..+.+...+.++.|+|++..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777789999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 004327 649 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 718 (761)
Q Consensus 649 ~~I~sl-----~~spdg~~Lasgs-Dg----~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 718 (761)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888877 54 7999999864332223333333444444445566888899999999999
Q ss_pred EECCCCcEEEE--ccCCCCeeEEEEeCCC
Q 004327 719 WNMTENKTLTL--SAHDKLVSSLAASTVN 745 (761)
Q Consensus 719 wDl~~~~~~~l--~~h~~~V~slafspdg 745 (761)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 2466788999999964
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.5e-29 Score=255.82 Aligned_cols=280 Identities=16% Similarity=0.310 Sum_probs=235.4
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 471 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 466789999999999999976 6899999999999999999999999999999999999976 6789999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEE-cC
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA-IE 627 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags-~d 627 (761)
++.+ ++.++.+ ...+..|+-+.. ...+++|+. .|.|||.....++..+... ..+.++.|+|-...+++++ .|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9864 4566653 455777776554 467778865 5999999988888888754 4589999999877666555 89
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
+.|.+||++...++..+. -...-+.|||+|.+..+++++ |..++.||++.-. ..+....+|.+.|.++.|+|.|..
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 999999999998877654 334557899999777777788 8899999998653 567778889999999999999999
Q ss_pred EEEEEcCCcEEEEECCCCcEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 707 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~~~~~l~--~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+++|+.|.+|+||.++.+....+. .--..|.|+.|+.|.+||++||+|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999887655222 2234699999999999999999999999996
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=238.44 Aligned_cols=267 Identities=20% Similarity=0.350 Sum_probs=226.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|..|.+|...++. ..+..+++|.++|..+.|.+|+..|++++.|++|+.||+++
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 466777777777777432221 23456779999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
++.++.+++|...|+.+.-+.-|. ++.+++.|++++|||++.... ++++. ....++++.|...+..++ +|+-|+.|
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~i 198 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDI 198 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-eccccCce
Confidence 999999999999999998444443 677889999999999997553 55543 456799999998876666 89999999
Q ss_pred EEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCCC----CEEEEEEcCCC
Q 004327 590 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCWNTSG 660 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t----~~~i~~l~~h~~----~I~sl~~spdg 660 (761)
++||++......++..+ ..|+.+..++++.++++-+.|+++++||++- ..++..+.+|.. ....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999988854 5689999999999999999999999999984 356777777543 34678999999
Q ss_pred CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 661 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 661 ~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.++.+++ |..+++||..+. .++..+.+|.+.|.++.|+|...+|.+++.|.+|++=.+
T Consensus 279 ~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999 999999999775 789999999999999999999999999999999987543
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=269.47 Aligned_cols=270 Identities=24% Similarity=0.420 Sum_probs=241.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEE-eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~-l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 466778899888 55899999999999999999999888 99999999999998778899999999999999988876
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwD 634 (761)
+...+.+|.+.|.++... ..++++|+.|.+|++|++.++.++..+. +...|.++.++ +..+++|+.|+.|.|||
T Consensus 283 C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 589999999999999987 4577789999999999999999999999 77889999988 68999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004327 635 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 635 l~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d 713 (761)
+.++++++.+.+|...|+++.+... .++++|+ |++|++||+++.. .|+..+..|...+..+.+ .+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988766 7888898 9999999998764 688899988888865554 66789999999
Q ss_pred CcEEEEECCCCcEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 714 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 714 g~I~IwDl~~~~~~-~l~~-h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.|++||..+++++ ++.+ |...|+++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 66889998876 46789999999999997
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=7.4e-29 Score=263.31 Aligned_cols=248 Identities=18% Similarity=0.300 Sum_probs=219.6
Q ss_pred CeEEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....++++|.+|..+|.+++|+.++..+| +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 355678889999999999999 8899999999999999999987778999999999999999999987666 89999999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 004327 590 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 667 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs- 667 (761)
++||+++|.++..+.....++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE----EEccCC--CCeeEEEE
Q 004327 668 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 741 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~----~l~~h~--~~V~slaf 741 (761)
|+.++||+.+.+.....+... .-....+|..+|.++++++-+.|+.|.||.+...-.. .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 889999999887443333332 3345678899999999999999999999987543322 566774 45677899
Q ss_pred eCCCCEEEEEECCCeEEEcC
Q 004327 742 STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 742 spdg~~LaSgs~DG~I~IWd 761 (761)
||||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.8e-26 Score=276.96 Aligned_cols=280 Identities=14% Similarity=0.226 Sum_probs=220.7
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 505 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~V 505 (761)
.....++++|+.|+.+++|........ . .... ..+..+. +...|.+++|++ ++.+||+++.||+|+|
T Consensus 492 s~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 492 DRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 344568889999999999843211000 0 0000 0112223 346799999987 5789999999999999
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.++.. +..+..+ ..|.++.|++....+|++|+
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 99999999999999999999999997 788999999999999999987653 5566544 67999999776567888999
Q ss_pred CCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCEEEEEE
Q 004327 585 NNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCW 656 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~-~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t------~~~i~~l~~h~~~I~sl~~ 656 (761)
.|+.|++||+++.. .+..+. +...|.++.|. ++.+|++++.|+.|++||++. ..++..+.+|...+.+++|
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 99999999998765 344443 44678999997 678999999999999999974 3567889999999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCCCCceeE----------EEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 657 NTSGEYLASVS-DELVRVWSIGSGSKGECI----------HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 657 spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i----------~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
++++.+|++|+ |+.|++|+.......... .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999 999999998654211000 011234556999999999999999999999999996
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=251.58 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=240.3
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 479 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 479 ~~~V~~lafSpdg~~-Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
.+.|++++|+|...+ +|+++ .-.+.||+..+....+++......|++++|..||++|++|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999995544 44443 46899999998888888888889999999999999999999999999999554 5568
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEEC
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 635 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~-~Llags~dg~I~IwDl 635 (761)
+.+.+|..+|..+.|+|.++.+|++|++|+.+++||+.+......+. +...|.|.+|+|-.. .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999887643444 456699999999766 5778888999999999
Q ss_pred CCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004327 636 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 636 ~t~-~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg 714 (761)
+.. ..+.++. |..+|.++.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999998764 44445555889999999999999999999999
Q ss_pred cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 715 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 715 ~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
.|++||+.+.+.+.-....++|.+|+.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999988888866678899999999999999999999998764
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.6e-28 Score=238.25 Aligned_cols=252 Identities=18% Similarity=0.226 Sum_probs=226.9
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
-.-+.++.+|.+.|+..+++.+....|+++.|-+.+|||.-++..+.+| .|...|..++|+.|.++|++|+.++.++||
T Consensus 49 gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 49 GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhh
Confidence 3457889999999999999999999999999999999999999999998 588899999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg 628 (761)
|++.++.+...+.+|.+.|..+.|+.....+| +...|++||+||.+++..+..+..+.+++++.+++++. +++....+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCc
Confidence 99999999999999999999999998866666 66889999999999999999999999999999999955 56667778
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~-l~~~~~~I~sl~fspdg~~ 706 (761)
.|.+||..+...++.++ -...|.+...+|+..++++|+ |..++.||..++. .+.. ..+|.++|.|+.|+|+|..
T Consensus 206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCCCce
Confidence 99999999998888776 456789999999998888888 9999999999984 4444 4789999999999999999
Q ss_pred EEEEEcCCcEEEEECCCCcEE
Q 004327 707 LLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.++|+.||+|+||-+..++..
T Consensus 282 yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeccCCCceEEEEEecCCCch
Confidence 999999999999988665543
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.1e-27 Score=269.55 Aligned_cols=281 Identities=20% Similarity=0.295 Sum_probs=236.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEEcCC------------CeEEEEeccCCcceEEEEEcCCCCEEEEEeC
Q 004327 476 PASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 541 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs--~Dg~I~VWdl~t------------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 541 (761)
..+...|.+++.+|||..+|+|+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||.+||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456799999999999999999 999999998652 2334566789999999999999999999999
Q ss_pred CCeEEEEecCC----CC-------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004327 542 DRTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 604 (761)
Q Consensus 542 DG~I~VWDl~t----~~-------------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~ 604 (761)
|+.|.||+... .. ..+..+.+|+..|.+++|+|+ ..++++++.|++|.+||..+.+++..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccceeeeeee
Confidence 99999999872 00 146688899999999999997 4788899999999999999999888887
Q ss_pred c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEcCCCCEEEEEe--CC---eEE
Q 004327 605 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVR 672 (761)
Q Consensus 605 ~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg---~I~ 672 (761)
. .+.|..+.|+|-|++|++-+.|++|+||++.+....+.+.++. ..+..+.|+|||.||++.. .+ ++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 4 4668999999999999999999999999988776766665543 3578899999999999976 33 788
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCcEEEEECCCCcEEE--EccCC
Q 004327 673 VWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FP------------SLLVIGCYETLELWNMTENKTLT--LSAHD 733 (761)
Q Consensus 673 IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd-----g~------------~L~sgs~dg~I~IwDl~~~~~~~--l~~h~ 733 (761)
|.+-.+. .+-..+-+|..++.++.|+|. .. .+++|+.|++|.||.....+++. ..-..
T Consensus 249 IieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 249 IIERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 8887554 667788899999999999873 11 57888999999999997777762 23346
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 734 KLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 734 ~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..|.+++|+|||..|+.||.||+|.++
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 789999999999999999999999875
No 67
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.4e-26 Score=258.98 Aligned_cols=263 Identities=15% Similarity=0.221 Sum_probs=209.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE-------------EEeccCCcceEEEEEcC-CCCEEEEEeCCCeE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 545 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~-------------~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I 545 (761)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34556666677666677776776777765443222 24678999999999999 88899999999999
Q ss_pred EEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCC
Q 004327 546 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 618 (761)
Q Consensus 546 ~VWDl~t~~------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~ 618 (761)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|+|||+++++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24667889999999999999977889999999999999999998888776 44679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEECCCCCCceeEEEeec-C
Q 004327 619 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 691 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~~spdg~~Lasgs-----Dg~I~IWdl~s~~~~~~i~~l~~-~ 691 (761)
..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++.+|++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678999887777643 67999999987542 3333222 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCcEEEEECCCCcEEEE--ccCCCCeeEEEEeCC
Q 004327 692 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTV 744 (761)
Q Consensus 692 ~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l--~~h~~~V~slafspd 744 (761)
...+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 34566678999999999888 499999999999887732 245567788888875
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6e-27 Score=245.55 Aligned_cols=276 Identities=24% Similarity=0.361 Sum_probs=242.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
..|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 348888888887899999999999999999999999999999999999999999999999999999999988765 4667
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~---~~i~~l~fspd~~~Llags~dg~I~IwDl~ 636 (761)
...|..+|+.+..+|.|++++ ++++|+++.+.|++++.++...... -.+++..|+|||..|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 788999999999999986655 8899999999999999988877654 348999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 004327 637 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 637 t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg 714 (761)
+...+..|.+|.++|..|.|+.+|.||++++ |+.|++||++... .+.++.. ....+.++.|+..|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999 7789999998763 3333332 233799999999999999998877
Q ss_pred cEEEEECCC--CcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 715 TLELWNMTE--NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 715 ~I~IwDl~~--~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.|++++-.+ +.++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 777777444 3344 666788899999999999999999999999886
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=7.9e-27 Score=241.43 Aligned_cols=268 Identities=21% Similarity=0.358 Sum_probs=227.6
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCC---CEEEEEECCCeEEEE
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLW 506 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg---~~Lasgs~Dg~I~VW 506 (761)
..+|.+|+.|+.+++|.. +| .....+.+|+++|.+++|.-.. ..|++++.|.++++|
T Consensus 115 ~~~IltgsYDg~~riWd~-----------------~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-----------------KG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred CceEEEeecCCeeEEEec-----------------CC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 567888888887777722 22 3577889999999988885433 359999999999999
Q ss_pred EcCCCeEE----EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC------------------------CceeE
Q 004327 507 CTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLR 558 (761)
Q Consensus 507 dl~t~~~~----~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~------------------------~~~i~ 558 (761)
..+.++.. ....+|...|-+|+..+++..+++|+.|.+|.||+..+. +.++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 88876543 334599999999999999999999999999999993311 12456
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 638 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~ 638 (761)
++.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+.....+.++.++|....|++|+.|..|++||.+++
T Consensus 255 tl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 7889999999999998 46788999999999999999999999999999999999999999999999999999999976
Q ss_pred ---eEEEEEcCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004327 639 ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 639 ---~~i~~l~~h~~~I~sl~~spdg~~-Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d 713 (761)
.....|.+|...|.++.|+|...+ |++++ |+++++||+++.. ..++.+..|...|.++.|... ..|++|+.|
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGGaD 409 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGGAD 409 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEeccCc
Confidence 456788999999999999998765 55566 9999999999863 478889999999999999754 469999999
Q ss_pred CcEEEEECC
Q 004327 714 ETLELWNMT 722 (761)
Q Consensus 714 g~I~IwDl~ 722 (761)
..|+|+...
T Consensus 410 ~~l~i~~~~ 418 (423)
T KOG0313|consen 410 NKLRIFKGS 418 (423)
T ss_pred ceEEEeccc
Confidence 999998643
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-27 Score=243.66 Aligned_cols=283 Identities=20% Similarity=0.312 Sum_probs=238.2
Q ss_pred CcceEEEEecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeE
Q 004327 404 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 483 (761)
Q Consensus 404 ~~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~ 483 (761)
+..-.+.|+.+| +++++++.|.+.-.|. +.....+....++.+|..+|.
T Consensus 225 dEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~----------------v~~d~~~kl~~tlvgh~~~V~ 273 (519)
T KOG0293|consen 225 DEVWFLQFSHNG---------------KYLASASKDSTAIIWI----------------VVYDVHFKLKKTLVGHSQPVS 273 (519)
T ss_pred CcEEEEEEcCCC---------------eeEeeccCCceEEEEE----------------EecCcceeeeeeeecccCceE
Confidence 345666777766 5788888887777662 222233677889999999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~ 562 (761)
.+.||||.++|++++.|..+.+||+.++.....+. +|...+.+++|.|||..+++|+.|+.|..||++... +....+
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~g 351 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEG 351 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccc
Confidence 99999999999999999999999999999887774 356889999999999999999999999999998643 333333
Q ss_pred CC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004327 563 HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 641 (761)
Q Consensus 563 h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i 641 (761)
-. -.|.+++..+||+.+++++ .|..|++|+.++......+..+.++++++++.++.++++.-.+..|.+||++..+.+
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV 430 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence 22 4599999999998888665 699999999998887778888899999999999999999999999999999998999
Q ss_pred EEEcCCCC--CEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcE
Q 004327 642 LKLQGHKN--QVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETL 716 (761)
Q Consensus 642 ~~l~~h~~--~I~sl~~sp-dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I 716 (761)
..+.+|.- .|..-||.- +..++++|+ |+.|+||+..++ ..+.++.+|...|.+++|+|..+ .+++++.||+|
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 99988865 455556654 448999999 999999999888 89999999999999999999774 57888999999
Q ss_pred EEEECCC
Q 004327 717 ELWNMTE 723 (761)
Q Consensus 717 ~IwDl~~ 723 (761)
+||....
T Consensus 508 RIWg~~~ 514 (519)
T KOG0293|consen 508 RIWGPSD 514 (519)
T ss_pred EEecCCc
Confidence 9997654
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-26 Score=253.26 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=230.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec-
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 562 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~- 562 (761)
-+.|+. ...||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367774 44677665 46899999999887766666689999999999999999999999999999998664 677777
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004327 563 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 640 (761)
Q Consensus 563 h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~-~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~ 640 (761)
|...|-+++|. ..++.+|+.|+.|.++|++....... +. +...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 56788999999999999998665544 33 456689999999999999999999999999988899
Q ss_pred EEEEcCCCCCEEEEEEcCC-CCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 004327 641 RLKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 714 (761)
Q Consensus 641 i~~l~~h~~~I~sl~~spd-g~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~--dg 714 (761)
...+..|...|..++|+|- ..+||+|+ |++|++||+.++ ..+..+. ....|.++.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999995 46777766 999999999987 4554443 4778999999999988877655 45
Q ss_pred cEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 715 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 715 ~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999997777 7889999999999999999999999999999996
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=225.97 Aligned_cols=255 Identities=23% Similarity=0.320 Sum_probs=220.6
Q ss_pred CCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCC
Q 004327 454 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 533 (761)
Q Consensus 454 ~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg 533 (761)
.|+++++|+..+|. .++++.+|...|..++.+.|...|++|+.|+.|.+||+++|+..+.+.+|.+.|+.|+|+.+.
T Consensus 37 sdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees 113 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES 113 (307)
T ss_pred CCceEEeecccccc---eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc
Confidence 34555666666663 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEE
Q 004327 534 SRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 612 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~-~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l 612 (761)
..+++|+.|.++++||.++.. .++..+......|.++... ++.+++|+.||+++.||++.|.....+- ..+|+++
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~v 189 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSV 189 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc-CCcceeE
Confidence 999999999999999998654 3577788888999999998 5678899999999999999988766553 4789999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE--EEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 689 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I--~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~ 689 (761)
+|+++++..++++.|+.|++.|-++++.+..+++|...- ..++++....++++|+ ||.|++||+... ..+..+.
T Consensus 190 s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~ 266 (307)
T KOG0316|consen 190 SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLS 266 (307)
T ss_pred EecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeec
Confidence 999999999999999999999999999999999997643 3556777788999999 999999999876 6677777
Q ss_pred cCCCc-eEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 690 CTGNK-FHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 690 ~~~~~-I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.+... +.++.++|....++++...+ +.+|
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred cCCceeEEeeecccCccceeEecCCc-eece
Confidence 77766 89999999988777776654 4444
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=230.08 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=223.7
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CeEE-EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 475 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 475 l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t-~~~~-~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
-....+.|.+++||| ...+|+.++.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 345567899999999 556777999999999999976 3333 4556899999999999999999999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 552 NPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 552 t~~~~i~~~~~h~~~V~sl~fsp~g~-~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
++. ...+..|.++|.++.|.+... .+|++|+.|.+|++||.+....+..+..++.+.++..-. ..+++++.+..|
T Consensus 103 S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i 178 (347)
T KOG0647|consen 103 SGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHI 178 (347)
T ss_pred CCC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcE
Confidence 975 678888999999999987643 478899999999999999999999999888888877654 468889999999
Q ss_pred EEEECCCCeEEEE-Ec-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------CceEEE
Q 004327 631 SILDVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSC 698 (761)
Q Consensus 631 ~IwDl~t~~~i~~-l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~---------~~I~sl 698 (761)
.+|+++++..... .. .-+-.+.||+...|....+.|+ +|.+.|..+..+.. ..-..+++|. ..|.++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecce
Confidence 9999987643322 11 1234578999888888888899 99999999987533 3333444443 247889
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 751 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSg 751 (761)
+|+|....|+++++||++.+||-.....+ +...|..+|+|++|+.+|.++|-+
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999999999998776555 667899999999999999987754
No 74
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-26 Score=256.24 Aligned_cols=271 Identities=22% Similarity=0.404 Sum_probs=225.6
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 506 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VW 506 (761)
++...||.++-..+.|.+| |..-+ ..+..|.+|.++|..++|+|...++++|+.|-+|+||
T Consensus 18 HP~rPwILtslHsG~IQlW----------------DYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLW----------------DYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred CCCCCEEEEeecCceeeee----------------hhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 3444567766666555555 44333 2455688999999999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 507 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 507 dl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
++++.+++.++.+|-+.|..+.|++.-.+|+++|.|.+|+||+..+.+ ++..+.||...|+|..|+|. +.++++++-|
T Consensus 79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhpt-EDlIVSaSLD 156 (1202)
T KOG0292|consen 79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPT-EDLIVSASLD 156 (1202)
T ss_pred ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCc-cceEEEeccc
Confidence 999999999999999999999999999999999999999999999866 59999999999999999997 4688899999
Q ss_pred CcEEEEECCCCe---------------------------ee--eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004327 587 SEIRYWSINNGS---------------------------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 587 g~I~vWDl~t~~---------------------------~~--~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~ 636 (761)
-+|+|||+..-+ .+ ..+. +..+|+.++|+|.-..|++|+.|..|++|.+.
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 999999985211 01 1111 33468899999999999999999999999987
Q ss_pred CCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004327 637 TQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 637 t~~--~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d 713 (761)
.-+ .+-+..+|...|.|+-|+|..++|++.+ |++|+|||+... ..+..+......++.++.+|..+. ++++.|
T Consensus 237 etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNL-fAAgHD 312 (1202)
T KOG0292|consen 237 ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNL-FAAGHD 312 (1202)
T ss_pred cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcce-eeeecC
Confidence 543 4566789999999999999999999999 999999999765 778888888899999999999984 444555
Q ss_pred CcEEEEECC
Q 004327 714 ETLELWNMT 722 (761)
Q Consensus 714 g~I~IwDl~ 722 (761)
+.+.+|.+.
T Consensus 313 sGm~VFkle 321 (1202)
T KOG0292|consen 313 SGMIVFKLE 321 (1202)
T ss_pred CceEEEEEc
Confidence 555555554
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.2e-25 Score=212.27 Aligned_cols=290 Identities=19% Similarity=0.256 Sum_probs=238.8
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC------C---------eEEEEeccCCcceEEEEEcC
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 531 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t------~---------~~~~~l~~h~~~V~~v~fsp 531 (761)
..|..+.++.. +..|.+++|+|.|.+.|+|+..++++|.-... + -..+.-+.|.+.|+|++|+|
T Consensus 21 ~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 34556665554 45699999999999999999999999874321 1 11133357899999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCeeeeEE
Q 004327 532 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 603 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~----~i~~~~~h~~~V~sl~fsp~---g~~llasgs-~Dg~I~vWDl~t~~~~~~~ 603 (761)
+|.+|++|+.|++|++.-++...+ .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987764332 12467789999999999643 456776665 5788888899999888888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 004327 604 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 675 (761)
Q Consensus 604 ~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~--h-----~~~I~sl~~spdg~~Lasgs-Dg~I~IWd 675 (761)
..+.+-.-..++-++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7665544445566778899999999999999999888887643 2 25789999999999999999 99999999
Q ss_pred CCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc-----EEEEccCCCCeeEEEEeCCCCEEEE
Q 004327 676 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVAS 750 (761)
Q Consensus 676 l~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~-----~~~l~~h~~~V~slafspdg~~LaS 750 (761)
++.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+.... .+.+..|+..+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9988 8899999999999999999999999999999999999986542 2356689999999999999989999
Q ss_pred EECCCeEEEc
Q 004327 751 ASHDKCVKIW 760 (761)
Q Consensus 751 gs~DG~I~IW 760 (761)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=261.15 Aligned_cols=245 Identities=18% Similarity=0.315 Sum_probs=202.4
Q ss_pred EEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC--------------------------------CC------
Q 004327 514 KSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD------ 554 (761)
Q Consensus 514 ~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t--------------------------------~~------ 554 (761)
...+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998754 00
Q ss_pred ---------------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEE
Q 004327 555 ---------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR 613 (761)
Q Consensus 555 ---------------------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~ 613 (761)
.++..|.||.+.|.+|.|+.+ .+|++++.|.+|++|++....|+.+|.+..-|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 123457899999999999976 567799999999999999999999999999999999
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee--
Q 004327 614 FQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-- 689 (761)
Q Consensus 614 fsp-d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-- 689 (761)
|+| |.++|++|+-||.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+..........+...
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 67889999999999999999887776554 347899999999999999999 9999999998653211111111
Q ss_pred ---cCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCCCcEE-EEccCC--CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 690 ---CTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 690 ---~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~~~~-~l~~h~--~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.....|+.+.|.|... .|++.+.|..|+|||.++..++ .+.++. ..-....|+.||++|+++++|..|+||+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1123799999997654 5999999999999999887777 555432 2345667889999999999999999996
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.6e-27 Score=237.23 Aligned_cols=273 Identities=20% Similarity=0.333 Sum_probs=232.6
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++.+|+.|+.+++|....+..- +...+..-..+--|..+|.|++|+.|...||+|+.||.|+||.+.+
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 78999999999999954333211 2223333344566889999999999999999999999999999999
Q ss_pred CeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 511 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
|.+++.|. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+++. ++.+.+|...|+...|.++|.+++ +++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccE
Confidence 99999996 8999999999999999999999999999999999875 899999999999999999986655 99999999
Q ss_pred EEEECCCCeeeeEEecCC---CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCE
Q 004327 590 RYWSINNGSCAGVFKCQS---GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEY 662 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~---~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~~spdg~~ 662 (761)
++|+.++.+|+.+|+..+ .|..+..-|.+ ..++++...++|+|.++. +..++.+.. ..+...+.+.+|.|++
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcE
Confidence 999999999999887533 46777776644 568888889999999986 455666643 3456778889999999
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 663 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
+++.+ |+.+++|.+.++ ..-+.+..|+..+..++-+|..+.|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99988 999999999888 66777888999999999999999999999999999995
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=232.04 Aligned_cols=289 Identities=19% Similarity=0.321 Sum_probs=245.4
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EecC------C---------------------------------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 548 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 548 WDl~------t---------------------------------~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
|... . -..++..+.+|.+.|.+..|...+.. +++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccc
Confidence 9621 0 01245678899999999999887654 559999999
Q ss_pred EEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 589 IRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
..+||+++++.+..+..+ ...+.++-+|..+.+++.+.|.++++||++.. ..+..|.+|...|+++.|..+.+ ++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 999999999999988754 45788888999888899999999999999854 56778999999999999987665 5556
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEE-----ccCCCCeeEEE
Q 004327 667 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL-----SAHDKLVSSLA 740 (761)
Q Consensus 667 s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l-----~~h~~~V~sla 740 (761)
+ |.+|+|||+++.. ..+.++. ...++..++++..++.|+.--.+..|++||+...++..+ .+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 8899999998754 3444444 367788999999998888888888999999998876633 48999999999
Q ss_pred EeCCC--CEEEEEECCCeEEEcC
Q 004327 741 ASTVN--GMVASASHDKCVKIWK 761 (761)
Q Consensus 741 fspdg--~~LaSgs~DG~I~IWd 761 (761)
|..+. .-|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 98654 3588999999998885
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=256.17 Aligned_cols=243 Identities=23% Similarity=0.419 Sum_probs=215.5
Q ss_pred EEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 471 EFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 471 ~v~~-l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+..++.+|.+.|.++... ..++++|+.|.+|+||+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEe
Confidence 4444 99999999999999878899999999999999999999999999999999999885 45788899999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCC
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg 628 (761)
+.++. .+..+.+|.++|.++.++ ..++++|+.|++|++||+.++++++.+..+ ..|.++.+... .+++.|+.|+
T Consensus 318 v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 318 VTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred ccCcc-eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc
Confidence 99876 488888899999999998 467779999999999999999999999854 45888877766 8999999999
Q ss_pred eEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCC
Q 004327 629 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFP 705 (761)
Q Consensus 629 ~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-~~~~I~sl~fspdg~ 705 (761)
.|++||+++. +++..+.+|..-+.++.+ .+++|++++ |++|++||..++ .++..+.+ +...|..+++. ..
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~ 465 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KE 465 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC--cc
Confidence 9999999999 999999999998866654 567888888 999999999887 78888877 56778877776 46
Q ss_pred EEEEEEcCCcEEEEECCCCcEE
Q 004327 706 SLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 706 ~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.+++++.++.+++||++++...
T Consensus 466 ~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eEEEEecCCeeEEEecccCchh
Confidence 6999999999999999999877
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.4e-27 Score=254.17 Aligned_cols=270 Identities=23% Similarity=0.421 Sum_probs=233.8
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCe------EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC-ceeEEee
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFT 561 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~------~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~-~~i~~~~ 561 (761)
|.++||++|+.||.|++|++.... ...++..|.++|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 367789999999999999876432 356788999999999999999999999999999999998764 6688899
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe----------cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 562 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--~~~~~~----------~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
.|++.|.|+++-...+.++++|+-|+.|.+||++++. .+..+. ....+++++..+.+..|+.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999955557899999999999999999873 232222 2345889999999988999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+.-. +|+.++..|...|+++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999999999999999999999999999999988 999999999766 89999999999999999999999999
Q ss_pred EEEcCCcEEEEECCCC-cEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 709 VIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~-~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999884 3445556677888888876666567788899999884
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=242.09 Aligned_cols=263 Identities=22% Similarity=0.355 Sum_probs=224.1
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 511 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~ 511 (761)
.+++|+.|..|..|.. . +.....+.++.+..+.|+++.|.++++++++++.|+.+++|+++..
T Consensus 189 tlatgg~Dr~Ik~W~v----------------~-~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNV----------------L-GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hhhhcchhhhhhhhhc----------------c-cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 4578888887777722 1 2224567778889999999999999999999999999999999999
Q ss_pred eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 004327 512 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 591 (761)
Q Consensus 512 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~v 591 (761)
+...++.+|.+.|+++.|.-....+++|+.|.+|++||+....+ .+++. ....+.+|+.. ...+++|-.|+.|++
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRF 326 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccceEE
Confidence 99999999999999999998777799999999999999998554 44433 23446666665 356779999999999
Q ss_pred EECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC----CCCEEEEEEcCCCCEEEEEe
Q 004327 592 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 592 WDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h----~~~I~sl~~spdg~~Lasgs 667 (761)
||+++..++......+.|+++..++++..+++++.|.++.++|+++......+... ....+.++|+|++.|+++|+
T Consensus 327 wD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred EeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999887776542 23478899999999999999
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~--~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
||.|+||++.++ ++...+..... .|++++|+|.|.++++++.++.+.+|
T Consensus 407 ~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 407 ADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999987 55555544433 59999999999999999999999999
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.4e-25 Score=224.77 Aligned_cols=268 Identities=19% Similarity=0.302 Sum_probs=223.3
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC--EEEEEeCCC
Q 004327 466 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 543 (761)
Q Consensus 466 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~--~Lasgs~DG 543 (761)
.+.+.....+..|.++|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 45566777889999999999996 88999999999999999999999999999999999999998765 899999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Lla 623 (761)
.|.+|+...- ..+.++++|.+.|+.+++||.+ .+.++.+.|+.++.||+-.|+.-...+.....+.+.|+|.|.+|++
T Consensus 108 ~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCCe-EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 9999999976 4689999999999999999996 5666777899999999999998888887778888999999998887
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE--e
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--H 701 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f--s 701 (761)
+.. +.|-||.+++......+. ....+.|+.|...+.+++.+.|+.|++||..+. .+...+..|..+|..+.+ .
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEec
Confidence 766 568889888776655554 336688888865554444444889999999875 788899999999999884 4
Q ss_pred CCCCEEEEEEcCCcEEEEECCCC-----cEEEEccCCCCeeEEEEe
Q 004327 702 PTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 742 (761)
Q Consensus 702 pdg~~L~sgs~dg~I~IwDl~~~-----~~~~l~~h~~~V~slafs 742 (761)
|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 56789999999999999999776 333333445667777643
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.7e-26 Score=240.87 Aligned_cols=242 Identities=19% Similarity=0.260 Sum_probs=211.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~ 553 (761)
+.-..+.|++++|-.||++||+|+..|.|+|||+.+...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999998776677889999999999999995 567888999999999999987
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
.. ...+.+|++.|.|.+|+|-.++++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 64 67899999999999999999999999999999999999987 7888999999999999999977666554 578999
Q ss_pred EECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 633 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 633 wDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
||+-++ +.+..+..|...|+|+++..++..|++++ |+.|++||+.+- +.++.+. -.++|.+|+++|++..+++|
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEe
Confidence 999965 55555666999999999999999999999 999999997654 5666665 47889999999999999999
Q ss_pred EcCCcEEEEECC
Q 004327 711 GCYETLELWNMT 722 (761)
Q Consensus 711 s~dg~I~IwDl~ 722 (761)
..+|.+.+-+..
T Consensus 298 msnGlv~~rr~~ 309 (487)
T KOG0310|consen 298 MSNGLVSIRRRE 309 (487)
T ss_pred cccceeeeehhh
Confidence 999988776543
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=222.15 Aligned_cols=251 Identities=20% Similarity=0.307 Sum_probs=208.0
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcC-CCeEEEEeccCCcceEEEEEcC-CCCEEEEEeCCC
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR 543 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~-t~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG 543 (761)
..+.+...+.. .+.++.++|+++. ..+++++.||+++|||+. ...++..+++|...|.++.|++ +...+++++.|+
T Consensus 49 ~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~ 127 (311)
T KOG0277|consen 49 KGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG 127 (311)
T ss_pred CCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCC
Confidence 33445554443 3459999999954 578888999999999964 3467888999999999999998 566788889999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecC-CCEE
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPR-LGRI 621 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~~~~i~~l~fspd-~~~L 621 (761)
+|++|+...+. .+.++.+|...|+...|+|....+|++++.|+++++||++. |+......+...+.++.|+.- .+.+
T Consensus 128 TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 128 TIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 99999998766 58999999999999999999999999999999999999986 454443334458999999874 4567
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 622 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 622 lags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
++++.|+.|++||++.- .++..+.+|.-.|..++|+|.. .+|++++ |=+++|||..... .++.....|..-+..+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGL 284 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecc
Confidence 77888999999999975 6788899999999999999975 5788888 9999999997543 4566666777888888
Q ss_pred EEeC-CCCEEEEEEcCCcEEEEEC
Q 004327 699 VFHP-TFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 699 ~fsp-dg~~L~sgs~dg~I~IwDl 721 (761)
.|++ +..+++.++-|+.++||+.
T Consensus 285 Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccCceeeecccccceeeecc
Confidence 8887 4567999999999999984
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=223.35 Aligned_cols=241 Identities=24% Similarity=0.363 Sum_probs=216.2
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004327 515 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 515 ~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i-~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD 593 (761)
+.+.+|...|.+|+|+-+|..|++|+.|+++.||+++..+... ..+.+|.+.|-.++|+|....+|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4566899999999999999999999999999999998764322 356789999999999999999999999999999999
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 004327 594 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 672 (761)
Q Consensus 594 l~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~ 672 (761)
++.++++..+....+-..+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988777665 556788899998777776666 79999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004327 673 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 751 (761)
Q Consensus 673 IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSg 751 (761)
|.....- +.+..+..|.....|+.|+|+|+++++|+.|..+.+||+.+--++ .+..++-+|..++|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998754 788899999999999999999999999999999999999988877 677899999999999999999999
Q ss_pred ECCCeEEE
Q 004327 752 SHDKCVKI 759 (761)
Q Consensus 752 s~DG~I~I 759 (761)
+.|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988754
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.9e-25 Score=257.40 Aligned_cols=252 Identities=23% Similarity=0.352 Sum_probs=214.5
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC------------------CCeEEEEeccCCcceEEEEEcC
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------------------SFTVKSTLEEHTQWITDVRFSP 531 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~------------------t~~~~~~l~~h~~~V~~v~fsp 531 (761)
..+.....|.+.|+|+.|++||++||+|+.|+.|.||... .++.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 4567788999999999999999999999999999999766 2346778899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-----
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----- 606 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~----- 606 (761)
++.+|++++.|++|.||+..+. ..++.+.+|.+.|..+.|.|-| .+||+-++|++|+||++.+..+.+.+..+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999998 5689999999999999999997 56778999999999998877666666532
Q ss_pred --CCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC--------C-----C----EE
Q 004327 607 --SGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS--------G-----E----YL 663 (761)
Q Consensus 607 --~~i~~l~fspd~~~Llags~----dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd--------g-----~----~L 663 (761)
..+..+.|+|||.+|++... ...+.|++-.+.+.-..|-+|.+++.++.|+|. | . .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 23678999999999988765 237899999999999999999999999999981 1 1 46
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 664 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 664 asgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
|+|+ |++|.||..........++ ......|..++|+|||..|++++.||+|.++.+...+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6677 9999999996654333333 3346789999999999999999999999999987643
No 87
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=5.2e-24 Score=226.22 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=207.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCceeEEeecCCCCeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 569 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~s 569 (761)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++..+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999998888876544 6789999999876 5667889999999987654 44444443 3567
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCC
Q 004327 570 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 570 l~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg-~I~IwDl~t~~~i~~l~~h~ 648 (761)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++.+..+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999988787777788999999999988888777666678999999999998888765 57788999887766544 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCcEEE
Q 004327 649 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 718 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~-------~~~I~sl~fspdg~~L~sg-s~dg~I~I 718 (761)
..+.+++|++++.+|++++ ++.|++||+.++ .++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999886 333333211 1123568899999986665 45668999
Q ss_pred EECCCCcEEEEccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEcC
Q 004327 719 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 761 (761)
Q Consensus 719 wDl~~~~~~~l~~h~~~V~slafspdg~~LaSg-s~DG~I~IWd 761 (761)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887544556689999999999999876 4689999997
No 88
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.8e-24 Score=243.21 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=190.4
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------eEEEEeccCCcceEEEEEcCCC-CEEEEEeCCC
Q 004327 473 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 543 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~DG 543 (761)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. ..+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34789999999999999 8899999999999999999764 3467889999999999999975 6999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEE
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 621 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~L 621 (761)
+|+|||+.++. .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+..+.. +..+.|.++++.+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 477888899999999999986 5677999999999999999998887765543 4567899988888
Q ss_pred EEEEc----CCeEEEEECCCCe-EEEEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEee-cCC
Q 004327 622 LAAAI----ENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELS-CTG 692 (761)
Q Consensus 622 lags~----dg~I~IwDl~t~~-~i~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~-~~~ 692 (761)
++++. |+.|++||+++.. ++..... +...+....|++++.+|++++ |+.|++||+.++. .+.... .+.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 87653 6899999998754 3333332 334566678999999888776 8999999998863 333322 234
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 693 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
.++..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888887532 11222223455555443
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=242.93 Aligned_cols=304 Identities=14% Similarity=0.195 Sum_probs=243.5
Q ss_pred cccceecCCCceeEEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCeEEEEEcCCCeEEEE---------
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST--------- 516 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpd-----------g~~Lasgs~Dg~I~VWdl~t~~~~~~--------- 516 (761)
..-+||+.+-........+--|...|+.+.--|- ...+++++.|++|++||++.+..-.+
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 3357887777777777777889988988876651 23589999999999999875211100
Q ss_pred ----------------------------eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeE
Q 004327 517 ----------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 568 (761)
Q Consensus 517 ----------------------------l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~ 568 (761)
.......|.+++.+|++.+||+|..-|+++||++.+-.+ ..+...|..+|.
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEil 505 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESEIL 505 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccceeE
Confidence 002334699999999999999999999999999987664 667788999999
Q ss_pred EEEEcCC--CCcEEEEEeCCCcEEEEECCC-CeeeeEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEE
Q 004327 569 SLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRL 642 (761)
Q Consensus 569 sl~fsp~--g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~-~~~i~~l~fspd~--~~Llags~dg~I~IwDl~t~~~i~ 642 (761)
|+.|+.. +..+|++++.|.-|.|||+.. ..++.++.. ...|+++.|.-.+ ..+++++.|..|.+--........
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 9999853 467899999999999999964 344555553 5679999998876 668888888877654433211111
Q ss_pred EEcC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 643 KLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 643 ~l~~-----h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
.+.. ....++.++..|..+++++++ |..|+|||+.+++..+.++--..+++....+...|.|.||++.+.|.++
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 1211 234689999999999999999 9999999999986555555555677888999999999999999999999
Q ss_pred EEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 717 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 717 ~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+||..+++++ ...+|...|+.+.|.+|.+.|++.+.||+|.||+
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 99999999999 8889999999999999999999999999999995
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=220.72 Aligned_cols=286 Identities=19% Similarity=0.276 Sum_probs=214.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE--EEe--ccCCcceEEEEEcCCCCEEEEE-eCCCeE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLATS-SADRTV 545 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~--~~l--~~h~~~V~~v~fspdg~~Lasg-s~DG~I 545 (761)
.+..+++|.+.|+|++|+.||++||+++.|++|+||+++++... +.+ .-.-+..+.|+|.||.+-+++. -...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 35668999999999999999999999999999999999875322 111 1112356889999997765554 445689
Q ss_pred EEEecCC---CCcee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEE
Q 004327 546 RVWDTEN---PDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 613 (761)
Q Consensus 546 ~VWDl~t---~~~~i--------~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~ 613 (761)
++|.+.. +.... ..-..|.-.|..+-...+ ..++++|+.|..|.+|+++ |..+..+..+ ...+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 9997653 22111 122335556666666544 5678899999999999999 8877777643 3456788
Q ss_pred EecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC----C
Q 004327 614 FQPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----S 680 (761)
Q Consensus 614 fspd~~~Llags~dg~I~IwDl~---t~-----~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~----~ 680 (761)
.+|+|+++++++..-.|+||++- .| ..+..+++|...|..++|+++.+.+++.+ ||+++|||+.-. .
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999863 22 34677899999999999999999999999 999999998531 2
Q ss_pred CceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 681 KGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 681 ~~~~i~~l----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
..+.+.+. ...+.....+.++|.|..|++ +....|.+|..++++.. ....|...|.+|+|+++|++++||+ |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 22233322 222344458999999995554 45558999999998877 3347999999999999999999987 4
Q ss_pred CeEEEc
Q 004327 755 KCVKIW 760 (761)
Q Consensus 755 G~I~IW 760 (761)
..++++
T Consensus 394 r~vrv~ 399 (420)
T KOG2096|consen 394 RYVRVI 399 (420)
T ss_pred eeeeee
Confidence 566654
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.5e-25 Score=240.24 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=231.9
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE--EEeccCCcceEE-EEEcC-CCCEEEEEeCCCeE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 545 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~--~~l~~h~~~V~~-v~fsp-dg~~Lasgs~DG~I 545 (761)
...+.+.+|...|..|++.++ ..+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 445678999999999998754 48999999999999997654433 557788888888 88886 45569999999999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEE
Q 004327 546 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llag 624 (761)
.+|...... ++.++++|...|.|++...++. +++|+.|.++++|.+. ++...+. +...|..+.+-|+. .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998765 6899999999999999877653 6799999999999874 4444444 45668889998886 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 625 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
+.|..|++|.- ++.+.+|.+|.+.|+.+++-+++.++.++.||.|++|++. + .++.++.+|.+.++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 6788899999999999999998887776669999999994 4 7999999999999999988888
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEEEccCCC-CeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 705 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~-~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..|+++++|++++||+.. .+.....|.. .|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 889999999999999976 5554444544 899999888776 6778899999998
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=202.41 Aligned_cols=293 Identities=18% Similarity=0.269 Sum_probs=229.6
Q ss_pred cCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 004327 422 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 501 (761)
Q Consensus 422 ~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg 501 (761)
....+.....+.+.|+...+.++-..++-.+.+.. -...+..+....+.-+.|.+.|+|.+|+|+|.+||+|+.|+
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 33444555567778887777766544333322211 11223334455666778999999999999999999999999
Q ss_pred eEEEEEcCCCeE-----EEEeccCCcceEEEEEcCC----CCEEEEEe-CCCeEEEEecCCCCceeEEeecCCCCeEEEE
Q 004327 502 KAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 571 (761)
Q Consensus 502 ~I~VWdl~t~~~-----~~~l~~h~~~V~~v~fspd----g~~Lasgs-~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~ 571 (761)
+|++.-.....+ ..+|.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+. .+..+.+|++.|.++-
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghilaly 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILALY 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEEEE
Confidence 999975543221 2456679999999999653 45666654 36677777887766 4889999999998874
Q ss_pred -EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004327 572 -FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 642 (761)
Q Consensus 572 -fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~--------~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~ 642 (761)
|+ +.+|++|+.|.+|++||++-..++.++.. ...|..+++.|.|+.|+++-.|....+||++.++.+.
T Consensus 191 swn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 191 SWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred Eec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 54 57899999999999999999888887652 1347899999999999999999999999999999999
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 643 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 643 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~-~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
.+..|...|.|+.|+|...|+++|+ |..|++-|+...- ....+.....|...+..|.|+|..-.+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 9999999999999999999999999 9999999987531 1123445567889999999999998899999999999997
Q ss_pred CC
Q 004327 721 MT 722 (761)
Q Consensus 721 l~ 722 (761)
+.
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 64
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.8e-24 Score=218.01 Aligned_cols=269 Identities=19% Similarity=0.266 Sum_probs=219.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
..+.|.++.|+|.+..|+++++||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 3567999999999899999999999999999987666556 5889999999986 4679999999999999999866 4
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
..+..|...|.||.+.+.. ..+++|++|++|++||.+....+..+.....|.++... ++.|++|+.+..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 6677799999999999874 55669999999999999987777777766777777664 57899999999999999998
Q ss_pred CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC-CceeEEEeecCC---------CceEEEEEeCCC
Q 004327 638 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTF 704 (761)
Q Consensus 638 ~~~i~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~-~~~~i~~l~~~~---------~~I~sl~fspdg 704 (761)
........ .-+-.+.||++.|++.-+++++ ||.|.+=.+.... ....-..|++|. .+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 75544322 2345689999999888788888 9988877665541 112233444442 468999999999
Q ss_pred CEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 705 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
..|++|+.||.|.+||+.+.+.+ .+...+..|.+++|+.+|..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999988877 55566788999999999999999874
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.7e-25 Score=230.91 Aligned_cols=280 Identities=21% Similarity=0.283 Sum_probs=219.1
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecC-CCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~-~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
.+.+.++.+++.++++.-|....+.+......+--... .+.++.+-+ ++|.+.|.+++.++||+|||+|+.|..|.|
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 34445667777777776663332221111111100011 233333322 499999999999999999999999999999
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
|+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++...+ +.++.+|.+.|..|..... ..++.+|+.
T Consensus 229 w~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~r-eR~vtVGgr 306 (479)
T KOG0299|consen 229 WDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSR-ERCVTVGGR 306 (479)
T ss_pred ecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcc-cceEEeccc
Confidence 99999999999999999999999998888999999999999999997664 7889999999999988765 467778889
Q ss_pred CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-C-----------CCCEEE
Q 004327 586 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-H-----------KNQVHS 653 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~-h-----------~~~I~s 653 (761)
|+++++|++.....+......+.+.|++|..+ .+|++|+.+|.|.+|++-+.+++++... | +.+|++
T Consensus 307 DrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 307 DRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred cceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 99999999965444444445567899999876 7899999999999999999988876532 2 238999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004327 654 VCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 654 l~~spdg~~Lasgs-Dg~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~ 712 (761)
++..|...++++|+ +|.|++|-+..+.. ...+..+. ..+.|++++|+++|++|++|..
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 99999999999999 99999999987632 34445554 5678999999999997777754
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-23 Score=232.93 Aligned_cols=302 Identities=17% Similarity=0.267 Sum_probs=239.6
Q ss_pred CccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC
Q 004327 455 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 534 (761)
Q Consensus 455 d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~ 534 (761)
.....+|+..++ +.+..+.++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|+...+.|+.++|.-||.
T Consensus 181 ~G~lql~Nvrt~---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 181 QGRLQLWNVRTG---KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred CCcEEEEEeccC---cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence 344567777776 46777889999999999999888999999999999999999999999976569999999999987
Q ss_pred E-EEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC------------------
Q 004327 535 R-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------ 595 (761)
Q Consensus 535 ~-Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~------------------ 595 (761)
. +++|+..|.+.+||++..+........|.+.|..+.|.|. ..++++++.|..+++|=.+
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 5 5666677999999999766544444456666666666554 3444455555554444211
Q ss_pred --------------------------------------------------------------------------------
Q 004327 596 -------------------------------------------------------------------------------- 595 (761)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (761)
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence
Q ss_pred --------------CCee-eeEEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCE
Q 004327 596 --------------NGSC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQV 651 (761)
Q Consensus 596 --------------t~~~-~~~~~~~------~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l---~~h~~~I 651 (761)
+... ...+... ..+++++.++.|++.+.|...|.|.+|++.+|.....+ ..|.++|
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence 0000 0001111 23678899999999999999999999999999988888 4799999
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc--------------------------------------eeEEEeecCC
Q 004327 652 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------------------------------------ECIHELSCTG 692 (761)
Q Consensus 652 ~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~--------------------------------------~~i~~l~~~~ 692 (761)
++++.+.-++.+++++ +|.+++||+...... +.++.+.+|.
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~ 576 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG 576 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc
Confidence 9999999899899888 999999998764310 0112355789
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEc
Q 004327 693 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 760 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D-G~I~IW 760 (761)
+.|++++|||||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999999999999999999777788999999999999999999988 679998
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.5e-24 Score=235.43 Aligned_cols=239 Identities=21% Similarity=0.326 Sum_probs=210.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 88899999999999999999999999999999999999988 99999999997 6789999999999999999877656
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCC-CEEEEEE--cCCeEEEE
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRL-GRILAAA--IENYISIL 633 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~-~~Llags--~dg~I~Iw 633 (761)
..+.+|...|..+.|++++ ..+++|+.|+.|.|||.........+ .+...|..++|+|-. +.|++|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 6688999999999999996 67779999999999999665555544 466789999999954 5555554 38999999
Q ss_pred ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 634 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 634 Dl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
|..+++.+..+. ....|.+|.|++..+-|+++. ++.|.||+..+. ..+..+.+|...|..++++|||.+|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999988876 567899999999986666554 779999999875 7888999999999999999999999999
Q ss_pred EcCCcEEEEECCCC
Q 004327 711 GCYETLELWNMTEN 724 (761)
Q Consensus 711 s~dg~I~IwDl~~~ 724 (761)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=225.60 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=236.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC--CeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t--~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~ 554 (761)
..+.|+||.|+|...+|++++.|++++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 346899999999999999999999999998764 345666666778999999999999 89999999999999998866
Q ss_pred ce-eEEeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 555 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 555 ~~-i~~~~~h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
.. +....++. ..+.....+++++ +|+..+..|.|.+....+++.+..++.++.+..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22233333 3567788899975 666888899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEECCC---CCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 633 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGS---GSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 633 wDl~t~~~i~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s---~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+ ...++++..+..-...|+++.|++|...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998874322 336788889999999999 88999999764 23456677777777889999999999988
Q ss_pred EEEEc--CCcEEEEECCCCcEE-EEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 708 LVIGC--YETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 708 ~sgs~--dg~I~IwDl~~~~~~-~l~---~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+.++. +..+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 88776 458999998887766 222 2346799999999999999999999999996
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.3e-24 Score=214.35 Aligned_cols=259 Identities=18% Similarity=0.310 Sum_probs=208.3
Q ss_pred EEEEECCCeEEEEEcCC------------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee
Q 004327 494 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 494 Lasgs~Dg~I~VWdl~t------------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
|++|++...|.-+++.. ...+..+..|.+.|++++. ++.++|+|+.|-+|+|||+.... .+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 56677666666665431 2335667899999999999 58899999999999999999755 477888
Q ss_pred cCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004327 562 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 639 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~-~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~ 639 (761)
.|.+.|+++.|.+.-. ..|++|+.||.|.+|+.....++..++.+ +.|+.++++|.++..++.+.|+.++.||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998642 24559999999999999999999988844 559999999999999999999999999999887
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 640 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 640 ~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.-+.+.- ...-+.+.|+|.|.+++.+....|-||.+.+. ..+.++. ....+.++.|. ++.++++|+.++.|.+|
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhh-ccccceeeeec-CCceEEEecCCceEEEe
Confidence 6655542 22334499999999999999888999999775 2222222 22446666664 45679999999999999
Q ss_pred ECCCCcEE-EEccCCCCeeEEEE--eCCCCEEEEEECCCeEEEcC
Q 004327 720 NMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 720 Dl~~~~~~-~l~~h~~~V~slaf--spdg~~LaSgs~DG~I~IWd 761 (761)
|.++..+. .+.+|+..|-++.+ .|++.||+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987777 77899999999985 35678999999999999997
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.7e-24 Score=224.12 Aligned_cols=274 Identities=20% Similarity=0.282 Sum_probs=223.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE----EE-------------e-ccCCcceEEEEEcCCC
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST-------------L-EEHTQWITDVRFSPSL 533 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~----~~-------------l-~~h~~~V~~v~fspdg 533 (761)
+..+..|.-+|+||+++||++++++++.|++|.-|++.+++.. .+ - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6778899999999999999999999999999999999877633 11 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEE
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 612 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l 612 (761)
+||++|+.|..|.||+.++... +..+.+|.+.|.+++|-.. ..-+++++.|+.|++|++.....+.++ .+...|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998764 7889999999999999865 445558889999999999876666544 466778888
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 690 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-~ 690 (761)
.....+..+-+++.|.++++|++.. +....+.+|.+.+-|++|-.+.. +++|+ +|.|.+|++...+ ++.... .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC---ceeEeecc
Confidence 8888877777777999999999943 44556778999999999976654 55566 9999999997753 332211 1
Q ss_pred -----------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc----EEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 691 -----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 691 -----------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~----~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
+..+|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++++|+++|++|++|.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 12389999999999999999999999999998872 223334678999999999999666553
No 100
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=4.8e-23 Score=235.61 Aligned_cols=243 Identities=17% Similarity=0.204 Sum_probs=184.4
Q ss_pred CCccccceecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCCCe--------EEEEeccCCcce
Q 004327 454 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWI 524 (761)
Q Consensus 454 ~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~--------~~~~l~~h~~~V 524 (761)
.+...++|+..+. ..+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|
T Consensus 52 ~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 52 LIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred ceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 3445666665554 356778999999999999996 7899999999999999997542 344678899999
Q ss_pred EEEEEcCCCCE-EEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004327 525 TDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 603 (761)
Q Consensus 525 ~~v~fspdg~~-Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~ 603 (761)
.+|+|+|++.. |++++.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999998875 57899999999999998764 44444 567899999999975 5667778999999999999988887
Q ss_pred ecCCC-eeE-----EEEecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CC
Q 004327 604 KCQSG-ATQ-----MRFQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DE 669 (761)
Q Consensus 604 ~~~~~-i~~-----l~fspd~~~Llags~dg----~I~IwDl~t-~~~i~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg 669 (761)
..+.. +.. ..|++++++|++++.++ .|+|||+++ ..++..+. .+.+.+......+++.++++|+ |+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 75543 222 23458889999988774 799999995 45555443 2333444444455688888887 99
Q ss_pred eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 670 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 670 ~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
.|++|++..+. ...+..+. +..++..++|.|..
T Consensus 286 tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 99999997652 23333333 55678889999975
No 101
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-24 Score=214.58 Aligned_cols=276 Identities=20% Similarity=0.324 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
..||.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|++||+.|++++.|..|.+||+..+. ++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999887 355554
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004327 562 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 635 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~------~~~i~~l~fspd~~~Llags~dg~I~IwDl 635 (761)
...+|+.+.|+|...+.++++-.+..-.+.++...+.. .+.. .....+..|++.|+++++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 67899999999987777766655555666666542211 1111 112344578999999999999999999999
Q ss_pred CCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC------CceeEEEee--cCCCceEEEEEeCCCC
Q 004327 636 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFP 705 (761)
Q Consensus 636 ~t~~~i~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~------~~~~i~~l~--~~~~~I~sl~fspdg~ 705 (761)
.+.+++..++-.. ..|..+.|+..|++|+.-+ |..|+.|++..-. .....+.+. .....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999999887655 6899999999999998877 9999999986311 111112211 1234457899999999
Q ss_pred EEEEEEcCC-cEEEEECCCCcEEE-EccCC-CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 706 SLLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 706 ~L~sgs~dg-~I~IwDl~~~~~~~-l~~h~-~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|+++++... .++||....|.++. +.+.+ ....++.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 998888544 89999999999884 44555 568899999998888877 779999993
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-24 Score=236.51 Aligned_cols=316 Identities=15% Similarity=0.225 Sum_probs=253.1
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEc
Q 004327 429 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl 508 (761)
..+++.+|+.|+.++.|....+... ..-.....+..|.+.|..+....+++.|++++.|.+|++|+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 4467889999999988844333211 111146678899999999999999999999999999999999
Q ss_pred CCC--eEEEEeccCCcceEEEEE-cCCCCEEEEEeCCCeEEEEecCCCCc---------eeEEee-cCCCCeEEEEEcCC
Q 004327 509 ESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPS 575 (761)
Q Consensus 509 ~t~--~~~~~l~~h~~~V~~v~f-spdg~~Lasgs~DG~I~VWDl~t~~~---------~i~~~~-~h~~~V~sl~fsp~ 575 (761)
..+ -++.++..|.+.|.|+++ .++...+|+|+.|+.|.|||++++.. ....+. ++...|++++.++.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 877 577889999999999999 77888999999999999999996522 122333 88899999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl 654 (761)
+ .+|++|+..+.|++||.++++.+..+.. ...|.++..++||..+++++.||+|++||+...+|+.++..|...|+++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred c-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 6 7888999999999999999887777664 4569999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEE----
Q 004327 655 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL---- 729 (761)
Q Consensus 655 ~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l---- 729 (761)
..+|+-.++++|+ |+.|+.-|+++... +.. +-....+|..+..+.+..-+.+++.|+.|+-|...-...+..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tl-ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~ 338 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAK--STL-ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDL 338 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchh--heE-eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCC
Confidence 9999999999999 99999999988532 222 223456777777776666678888899999886543221100
Q ss_pred ---------------------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 730 ---------------------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 730 ---------------------~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
......|...+.-.|.++++|-..+|.+.+||
T Consensus 339 ~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 339 DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 01112233444555778999999999999997
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-23 Score=208.91 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=211.0
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004327 516 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 595 (761)
Q Consensus 516 ~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~ 595 (761)
.+.+|+.+++-|.|+.+|.+|++|+.|.++.||-..+++. +-++.+|.+.|+|++.+.+.. .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 3578999999999999999999999999999998877664 899999999999999988854 55599999999999999
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECC-------CCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 004327 596 NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-----ENYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 663 (761)
Q Consensus 596 t~~~~~~~~~~~~i~~l~fspd~~~Llags~-----dg~I~IwDl~-------t~~~i~~l~~h~~~I~sl~~spdg~~L 663 (761)
+|+++..++.+..+..+.|++++++++++.. .+.|.+||++ ..+++..+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999998888775 3579999998 456788888899999999999999999
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEe
Q 004327 664 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 742 (761)
Q Consensus 664 asgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafs 742 (761)
++|. ||.|.+||++++. ..+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999874 456666778889999999999999999999999999999999999777888999999999
Q ss_pred CCCCEEEEEEC
Q 004327 743 TVNGMVASASH 753 (761)
Q Consensus 743 pdg~~LaSgs~ 753 (761)
|....++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.7e-22 Score=213.01 Aligned_cols=264 Identities=15% Similarity=0.137 Sum_probs=197.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 004327 472 FQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWD 549 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWD 549 (761)
+..+..|.. +.+++|+|+++.+ ++++.++.|++||+.+++....+..+.. +..++|+|+++.++++ +.|+.|++||
T Consensus 24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 344455543 6789999999976 5667889999999999988877765544 5788999999977655 5689999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCC
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 628 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags-~dg 628 (761)
+.+... +..+. +...+.+++|+|++..++++...+..+.+||.++++.+..+.....+..+.|++++.++++++ .++
T Consensus 102 ~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 102 IETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCC
Confidence 987543 44444 234578899999986655444333467888999888776665556678899999999887665 589
Q ss_pred eEEEEECCCCeEEEEEcCCC-----C--CEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 629 YISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~-----~--~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
.|++||+++++.+..+..+. . ....++|+|++++++++. ++.|.+||+.++ +.+..+. +...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEE
Confidence 99999999988776654221 1 235688999999865543 678999999876 3333332 345788999
Q ss_pred EeCCCCEEEEEE-cCCcEEEEECCCCcEEEEccCCCCeeEEEEeC
Q 004327 700 FHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAAST 743 (761)
Q Consensus 700 fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~slafsp 743 (761)
|+|++.+|++++ .++.|++||+.+++++.........+.++++|
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999998875 58899999999999874334556778888875
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8e-25 Score=225.30 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=232.4
Q ss_pred ecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCC
Q 004327 412 GSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG 491 (761)
Q Consensus 412 s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg 491 (761)
..||..+++-.+..+.. +++|+.|+.|.+|. . ....++..+.+|.+.|..|++..
T Consensus 65 HrdGV~~lakhp~~ls~----~aSGs~DG~VkiWn----------------l---sqR~~~~~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLST----VASGSCDGEVKIWN----------------L---SQRECIRTFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred cccccchhhcCcchhhh----hhccccCceEEEEe----------------h---hhhhhhheeecccCceeeEEecc--
Confidence 33677777666666543 48899988888882 1 22246778999999999999987
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEE
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 571 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~ 571 (761)
..+++++.|++|+.|.++. .++.++.+ ...+..|.-+..+..++||+.+ |.|||..... ++..+.-....|.++.
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVK 194 (433)
T ss_pred cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEe
Confidence 6788999999999998866 36666643 3557788877778889998765 9999998644 5778877788899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCC
Q 004327 572 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQ 650 (761)
Q Consensus 572 fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-~~i~~l~~h~~~ 650 (761)
|+|....+|++|+.|+.|.+||++.+.++..+...-..+.++|+|..-.|+++..|..++.||++.. .++..+.+|.+.
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA 274 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccccee
Confidence 9999999999999999999999999999988888788899999997777888888999999999975 677888899999
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 651 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 651 I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
|.++.|+|.|.-|++|+ |.+|+||.++.+......++- .-..|.++.|+-|..||++|+.|+.|++|.....+
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999999999999 999999999876433322221 23468999999999999999999999999876544
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.6e-24 Score=227.40 Aligned_cols=278 Identities=18% Similarity=0.257 Sum_probs=232.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC---eEEEEec--cCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 476 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~---~~~~~l~--~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
-.|..-|.++.+|...++++||+ .|.|+|||+... ..+..+. .....|.++.+.|||+.|++|++-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36888889999999999999998 489999999643 2333332 24567999999999999999999999999999
Q ss_pred CCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 004327 551 ENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 551 ~t~~~~i~-~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg 628 (761)
..+...++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.. ..++.||.++++|..|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 87664333 2333334578899999964 555777799999999999999999984 46799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
+|+.||+++++.+.... ....|.++.++|.+.+|++|- ++.+.|...... ..+.+.-|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987665543 567899999999999999999 778888877543 344566789999999999999999
Q ss_pred EEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 708 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
++.+.|+.+-.|...-|..+.-....+.|.++.++.|++||+||+.|....||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999988887666677899999999999999999999887776
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=219.32 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=227.3
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++.+|+.|.++.+| ++..-..+.+++||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 466788888777777 2222345678999999999999999999999999999999999988
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
.........|..+|+.+..+|.|+||++++.||+..+.|++++........ ...-.+++++||||| .+|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceE
Confidence 888888889999999999999999999999999999999998775322222 122458999999996 788899999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 004327 590 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs 667 (761)
+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+...++... ..+|.+++|++.|.||+.++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999888877774 467999999999999999999999999999998877776543 34799999999999999986
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
|=.|++++-.+ ..+.++..+..|.+..+.+.|.....++++++.|..+++|.+
T Consensus 452 ~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEeccc-ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 55666666544 345778888888889999999999999999999999888864
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=7.9e-24 Score=213.83 Aligned_cols=288 Identities=13% Similarity=0.215 Sum_probs=225.8
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|..|+++....-- -......+...+....-..++++-.|.++|+++.|+|....|++|+.|++|++||+..
T Consensus 125 ~lvATGsaD~SIKildverml-aks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERML-AKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred cEEEccCCcceEEEeehhhhh-hhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence 689999999999998332110 0001111111111122346889999999999999999999999999999999999875
Q ss_pred CeEEEEe--ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE--EeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 511 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 511 ~~~~~~l--~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~--~~~~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
-...+.+ -....+|.++.|+|.|.+|++|..--++++||+++-.+-+. .-..|++.|+++.+++.+ .+.++++.|
T Consensus 204 ~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkD 282 (430)
T KOG0640|consen 204 TSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKD 282 (430)
T ss_pred HHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccC
Confidence 4333222 23456899999999999999999999999999998664332 224689999999999996 566699999
Q ss_pred CcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--C---CEEEEEEcC
Q 004327 587 SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHSVCWNT 658 (761)
Q Consensus 587 g~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~--~---~I~sl~~sp 658 (761)
|.|++||--+++|+.++. ....|.+..|..+++++++.+.|..+++|++.+++++..+.+.. + .-+...|+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh 362 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH 362 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC
Confidence 999999999999998876 23458899999999999999999999999999999999887642 1 224456788
Q ss_pred CCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 659 SGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 659 dg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
...|++.-. .+.+.-||.++..... ..-.+|.+.+..+.-+|.+.-+++++.|..+++|-.+
T Consensus 363 tEdyVl~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 363 TEDYVLFPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccceEEccccccCceeeccccchhhhh--hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 888888877 6689999999874322 2234789999999999999999999999999999643
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.3e-24 Score=209.42 Aligned_cols=249 Identities=20% Similarity=0.294 Sum_probs=204.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC---eEEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 548 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~---~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VW 548 (761)
.-..|.+.|..+...-.|+.|||++.|++|+||.+.+. ..+.++.+|.++|+.++|.. .|.+||++++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999989999999999999999998753 57789999999999999976 79999999999999999
Q ss_pred ecCCCCce-eEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC-e-ee--eEEecCCCeeEEEEecC---C-
Q 004327 549 DTENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L- 618 (761)
Q Consensus 549 Dl~t~~~~-i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~-~-~~--~~~~~~~~i~~l~fspd---~- 618 (761)
.-+++... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+++.. . .. ....+.-++++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 99887542 34567899999999999975 456778889999999998764 1 11 12235567899999986 4
Q ss_pred ----------CEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEECCCCCC
Q 004327 619 ----------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 619 ----------~~Llags~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
.+|++|+.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 56999999999999999875 3445588999999999999964 5799999 99999999874322
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
.-....+......+..+.|+..|+.|++++.|+.|++|.-.
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 22333344456789999999999999999999999999643
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.7e-23 Score=228.84 Aligned_cols=242 Identities=17% Similarity=0.311 Sum_probs=210.6
Q ss_pred ceeEEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 467 FTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~-lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|......++.++.+|...|+|+....++. +++||.|.+
T Consensus 45 ~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 45 KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 344556678888888888 88886 555799999999999999999999999999999999999887776 999999999
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEE
Q 004327 545 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 623 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Lla 623 (761)
++||.+.. +...+.+|...|+++.+.|++ .+++|+.|.+|++|.- ++++++|..+ ..|..+++-++ ..|++
T Consensus 124 akvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flS 195 (745)
T KOG0301|consen 124 AKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLS 195 (745)
T ss_pred eEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEe
Confidence 99998865 345689999999999999985 5669999999999986 6777887754 45788998887 67999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
++.||.|+.|++ +++++.++.+|...|+++....++..|++++ |++++||+.. .|...+......|+++.+-+
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEee
Confidence 999999999999 7899999999999999999878888888888 9999999976 67788877777899999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCC
Q 004327 703 TFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~ 724 (761)
+|. |++|++||.|+||.....
T Consensus 270 NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 270 NGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCC-EEEeccCceEEEEEeccc
Confidence 988 999999999999987643
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-23 Score=225.74 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=232.9
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC--EEEEEeCCC
Q 004327 466 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 543 (761)
Q Consensus 466 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~--~Lasgs~DG 543 (761)
-++..+...+++|++.|.||...|.|.+||+|+.||+|+||.+.++.++.++. ..+.|.||+|+|.++ .||++-.+
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~- 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE- 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-
Confidence 35556777899999999999999999999999999999999999999999885 446899999999765 34444333
Q ss_pred eEEEEecCCC------------------------------------CceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--
Q 004327 544 TVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-- 585 (761)
Q Consensus 544 ~I~VWDl~t~------------------------------------~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~-- 585 (761)
.+.|.+..-+ ..-++....|...|..+.||..|.++..++..
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3444332211 11123445688899999999998877766653
Q ss_pred CCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 586 NSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~La 664 (761)
...|.|+++........| +..+.+.++.|+|...+|++++. ..|+|||+.....++.+......|.+++.+|.|..|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 357999999877766666 35577899999999877777664 7899999998888888877888999999999999999
Q ss_pred EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE------CCCCc-EE---EEccCC
Q 004327 665 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN------MTENK-TL---TLSAHD 733 (761)
Q Consensus 665 sgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD------l~~~~-~~---~l~~h~ 733 (761)
.++ |+.+..||+.-.. +....+..|...+++++||+..+.+++|+.|+++.||. +-.+. ++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 998 9999999997653 56777888999999999999999999999999988874 22222 22 566786
Q ss_pred CC----eeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 734 KL----VSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 734 ~~----V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.. |.++.|+|.-.+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 9999999999999999999999999
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.3e-22 Score=203.08 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=203.6
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs-~Dg~I 589 (761)
.+..+.+......|+++.|+++|.++++++.|.+++|||..+++. ++++..++..|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666778899999999999999999999999999998875 7777777788899999776556554332 48899
Q ss_pred EEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 004327 590 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 667 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs- 667 (761)
++.++.+.+.++.|..+. .|..++.+|-+..+++++.|++|++||++..++...+..-.. ..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 999999999999998654 589999999999999999999999999998887776654333 4579999999999999
Q ss_pred CCeEEEEECCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCC---eeEEE
Q 004327 668 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 740 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~---V~sla 740 (761)
.+.|++||++.-.. .+...+. ........+.|+|||++|+.++..+.+++.|.-+|... ++..+... ....+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999997533 2223332 34677899999999999999999999999999999877 55444332 26778
Q ss_pred EeCCCCEEEEEECCCeEEEcC
Q 004327 741 ASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 741 fspdg~~LaSgs~DG~I~IWd 761 (761)
|+||+++|++|+.||+|+||+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=203.93 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=211.2
Q ss_pred ccccCCCCcceEEEEecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEec
Q 004327 397 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 476 (761)
Q Consensus 397 ~~~~~~s~~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~ 476 (761)
....++.+..+.+.|++- .+.++++||.|+.|++|...+. |. +.. +...
T Consensus 21 ev~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~---------------g~-~~~-ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNS---------------GQ-LVP-KAQQ 69 (347)
T ss_pred ecCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecC---------------Cc-ccc-hhhh
Confidence 334445556777777761 2357789999988888833221 11 111 4466
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC--EEEEEeCCCeEEEEecCCCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~--~Lasgs~DG~I~VWDl~t~~ 554 (761)
.|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+||+.|++|+.||.+...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 899999999999999999999999999999999984 556678999999999988665 89999999999999999755
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~~--~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
++.++. -.+.|++++.- ..+++.+..+..|.+|+++++... +... ..-.+.|++...+...++.|+-+|.+.
T Consensus 149 -pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 -PVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -eeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 344444 45678888765 346667777999999999765432 2222 234578999999988899999999999
Q ss_pred EEECCCC--eEEEEEcCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 632 ILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 632 IwDl~t~--~~i~~l~~h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
|..+..+ +.-..|+.|.. .|++|+|+|....|++.+ ||++.+||-... ..+.....+..+|+++.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence 9988876 44455555542 578899999877777766 999999998665 55667778899999999
Q ss_pred EeCCCCEEEEEEc
Q 004327 700 FHPTFPSLLVIGC 712 (761)
Q Consensus 700 fspdg~~L~sgs~ 712 (761)
|+.+|.+++.+..
T Consensus 301 fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 301 FNRNGSIFAYALG 313 (347)
T ss_pred ecCCCCEEEEEee
Confidence 9999998877654
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=233.96 Aligned_cols=274 Identities=19% Similarity=0.359 Sum_probs=215.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCC----eEEEEecc---CCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCC-
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN- 552 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~----~~~~~l~~---h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t- 552 (761)
+.+|..+++-..|++++. ..++||.+... ++...+.. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 566777788888888775 46777765432 22222211 112456788875 567999999999999999986
Q ss_pred -CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecC-CCEEEEEEcCCe
Q 004327 553 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIENY 629 (761)
Q Consensus 553 -~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd-~~~Llags~dg~ 629 (761)
....+..|..|...|.+++|++...++|++|+.||.|++||++..+...++... ..|..+.|+|. +.+|+++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 233456889999999999999999999999999999999999988887777654 45899999995 456777777899
Q ss_pred EEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 630 ISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 630 I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
+.+||++.. ++...+.+|.++|.|+.|+|++.+||+|+ |+.|+|||+.+... ..++++. ...+|.++.|-|...+.
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSYH 278 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccch
Confidence 999999975 67788889999999999999999999999 99999999987543 3333333 36789999999998765
Q ss_pred EEEEc---CCcEEEEECCCCcEE--EEccCCCCeeEEEEeC-CCCEEEEEECCCeEE
Q 004327 708 LVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 758 (761)
Q Consensus 708 ~sgs~---dg~I~IwDl~~~~~~--~l~~h~~~V~slafsp-dg~~LaSgs~DG~I~ 758 (761)
++.+. |-.|+|||++..-+. ++..|...++.++|.. |...|.+++.||+|.
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 54443 558999999776544 7889999999999965 345889999999864
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.3e-22 Score=221.48 Aligned_cols=329 Identities=21% Similarity=0.283 Sum_probs=246.4
Q ss_pred cCCeeeccccCCceeec--cCCCCCCCCCccccceecCCCceeEEE----------EEecCCCCCeEEEEEcCCCCEEEE
Q 004327 429 MDRFVDDGSLDDNVESF--LSPDDADPRDRVGRSAEVGKGFTFTEF----------QLIPASTSKVESCHFSPDGKLLAT 496 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~--~s~~~~~~~d~~~r~~d~~~g~~~~~v----------~~l~~H~~~V~~lafSpdg~~Las 496 (761)
.+-++++++-|..|++| ...++.+...+........+...+... ..+.||++.|+++.|+|++..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 46799999999999999 222222222222211112223333222 334599999999999999999999
Q ss_pred EECCCeEEEEEcCCCe----EE---EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--eeEEeecCCCCe
Q 004327 497 GGHDKKAVLWCTESFT----VK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTV 567 (761)
Q Consensus 497 gs~Dg~I~VWdl~t~~----~~---~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~--~i~~~~~h~~~V 567 (761)
++.|+++.+|..++.. .. -...+.....+...|+|+++.|++-++.|-.++|....... ....+.||.+.|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 9999999999766432 11 12234455688999999999999999999999999433222 234567999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC------
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 636 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~----~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~------ 636 (761)
.+++|+|.|++++ +.+.|-+-|+|-.-..+ .-+.+ .+....+|++|-+..-.|++|..+..+++|+..
T Consensus 365 ~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~ 443 (764)
T KOG1063|consen 365 KDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKS 443 (764)
T ss_pred eeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHH
Confidence 9999999987555 78889999988654111 11111 134457899998865677888888889999731
Q ss_pred -------------------------------------CCeE---------------------------------EEEEcC
Q 004327 637 -------------------------------------TQVC---------------------------------RLKLQG 646 (761)
Q Consensus 637 -------------------------------------t~~~---------------------------------i~~l~~ 646 (761)
++.. +.++.+
T Consensus 444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG 523 (764)
T KOG1063|consen 444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG 523 (764)
T ss_pred HHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc
Confidence 0000 112347
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 647 HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 647 h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
|...|++++.+|+++++++++ . ..|++|+..+. ..+..+..|.-.|+.++|+||+++|++++.|.++.+|.
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 888999999999999999987 2 27999999776 56668889999999999999999999999999999998
Q ss_pred CCCCcEE-----EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 721 MTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 721 l~~~~~~-----~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
....... ....|..-|+++.|+|++.++||+|.|.+|+||.
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 8554433 3568999999999999999999999999999994
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-23 Score=205.72 Aligned_cols=243 Identities=23% Similarity=0.405 Sum_probs=201.3
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC--ceeEEeecCCCCeEEEEE-cCCCCcEEEEEeCCCcEEEEEC
Q 004327 518 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 594 (761)
Q Consensus 518 ~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~--~~i~~~~~h~~~V~sl~f-sp~g~~llasgs~Dg~I~vWDl 594 (761)
..|.+.|.++...-.|++|+||+.|++|+|+.+++.. ..+.++.+|.++|..++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999999888899999999999999999998765 567899999999999999 4666789999999999999999
Q ss_pred CCCeeeeEEe---cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCC---C---
Q 004327 595 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 660 (761)
Q Consensus 595 ~t~~~~~~~~---~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~~spd---g--- 660 (761)
.++....... +...+++++|.|. +-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8885544333 4567999999986 346788889999999988754 333445679999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCcEEEEECCCC---
Q 004327 661 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 724 (761)
Q Consensus 661 --------~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~~~--- 724 (761)
+.|++|+ |..|+||+..++ ....-..+..|...|..++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4588888 999999999886 334445588999999999999975 56999999999999976532
Q ss_pred -cEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 725 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 725 -~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+...+......++.+.||..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445678899999999999999999999999995
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=8.7e-23 Score=218.02 Aligned_cols=275 Identities=16% Similarity=0.237 Sum_probs=209.9
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
+.....+.+|++|.+|+.|.-.. -+... ..++.+ ..-...|.++.|++.|..|++.+....++|
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~g----Mdas~-----------~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQG----MDASM-----------RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred cCCCceeeeccccceEEEEeccc----ccccc-----------hhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 33334668899999999993222 11111 112222 234456999999999999988888899999
Q ss_pred EEcCCCeEEEEe------------ccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCceeEEee-----cCCCCe
Q 004327 506 WCTESFTVKSTL------------EEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFT-----GHSTTV 567 (761)
Q Consensus 506 Wdl~t~~~~~~l------------~~h~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~-----~h~~~V 567 (761)
+|-+........ ++|...++|.+|+|+. ..|++++.||+++|||+++.+.-...++ +..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 997766554433 5899999999999965 4799999999999999997664343333 234568
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--e--cC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eE
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--CQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VC 640 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~--~--~~--~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-~~ 640 (761)
+.++|++++.. ||+|..||.|.+|+.........+ + +. ..|+|+.|+++|++|++-+.|+.+++||++.. ++
T Consensus 321 tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 99999999865 667788999999998653322211 1 22 36999999999999999999999999999975 55
Q ss_pred EEEEcC--CCCCEEEEEEcCCCCEEEEEe-------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 641 RLKLQG--HKNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 641 i~~l~~--h~~~I~sl~~spdg~~Lasgs-------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
+....+ ...+-+.++|+|+.++|++|. .+.+.+||..+- ..+..+......|..|.|+|.-+-|++++
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecchhhheeeec
Confidence 655544 233567899999999999986 247999998776 67777777788999999999999999999
Q ss_pred cCCcEEEEE
Q 004327 712 CYETLELWN 720 (761)
Q Consensus 712 ~dg~I~IwD 720 (761)
.||.++||-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999873
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=7.5e-23 Score=216.92 Aligned_cols=254 Identities=19% Similarity=0.333 Sum_probs=206.0
Q ss_pred EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCe----------EEEEeccCCcceEEEEEcCC-CCEEE
Q 004327 470 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLA 537 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~----------~~~~l~~h~~~V~~v~fspd-g~~La 537 (761)
.++...-.|.+.|+.+.+-| +..++|+++..+.|.|||..+.. +-.++.+|...-++++|++. .-.|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 34455567999999999999 45578888999999999986432 22377899988889999985 44799
Q ss_pred EEeCCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC--CeeeeEEe-cCCC
Q 004327 538 TSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSG 608 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t--~~~~~~~~-~~~~ 608 (761)
+++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..+
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 999999999999975433 34678999999999999999999999999999999999994 44444444 4678
Q ss_pred eeEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCC----
Q 004327 609 ATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS---- 680 (761)
Q Consensus 609 i~~l~fspd~~~-Llags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~---- 680 (761)
+.|++|+|-+.+ |++++.|++|.+||+++. .++.++.+|...|.+|.|+|+.. .|++++ |+.+.|||+..-.
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 999999996655 555666999999999985 67889999999999999999875 455555 9999999996522
Q ss_pred -------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCcEEEEECCC
Q 004327 681 -------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 723 (761)
Q Consensus 681 -------~~~~i~~l~~~~~~I~sl~fspdg~~L-~sgs~dg~I~IwDl~~ 723 (761)
..+.+..-.+|...|..+.|+|..+++ ++++.|+.+.||.+..
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234456677899999999999999875 5567788999999864
No 119
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=6.1e-23 Score=224.17 Aligned_cols=276 Identities=22% Similarity=0.323 Sum_probs=211.3
Q ss_pred EEEEcC---CCCEEEEEECCCeEEEEEcCCCeEE------EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 484 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 484 ~lafSp---dg~~Lasgs~Dg~I~VWdl~t~~~~------~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
++.|++ ...+||.+.+||.|.++|....... ..+..|...|.++.|.|....|++++.|.++++||+....
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366665 3457999999999999998764433 4556899999999999977789999999999999999866
Q ss_pred ceeE--EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----------EEe------------------
Q 004327 555 YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----------VFK------------------ 604 (761)
Q Consensus 555 ~~i~--~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~----------~~~------------------ 604 (761)
. .. .+.+|.+.|.++||.|.+..+||+|+.||.|.|||++....-. ..+
T Consensus 134 l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 134 L-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred e-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 4 43 4899999999999999999999999999999999987432000 000
Q ss_pred cCCCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEE--------EcCC---CCCEEEEEEcCCCCEEEEEe-C
Q 004327 605 CQSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLK--------LQGH---KNQVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 605 ~~~~i~~---l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~--------l~~h---~~~I~sl~~spdg~~Lasgs-D 668 (761)
....|.. +.+..|...|++++. |+.|+|||+++...... +..| ...+.+++.+..|.+|++.+ |
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0112333 556667788888887 99999999997654332 2223 33577888888888877666 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCC
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV 744 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~--~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspd 744 (761)
+.|++|++.+... ..+..+.++.. ....-..+|++.++++|+.|...++|.+.+...- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999999987432 33333333322 2334468999999999999999999999876544 67799999999999886
Q ss_pred C-CEEEEEECCCeEEEcC
Q 004327 745 N-GMVASASHDKCVKIWK 761 (761)
Q Consensus 745 g-~~LaSgs~DG~I~IWd 761 (761)
. .-+|+|++|-.++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 4 3578889999999996
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=9.9e-23 Score=223.65 Aligned_cols=247 Identities=21% Similarity=0.340 Sum_probs=214.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC---CCCEEEEEeCCCeEEEEecCC
Q 004327 476 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp---dg~~Lasgs~DG~I~VWDl~t 552 (761)
-+....|.|++.+|+|.+||+|..-|+++||++...+....++.|+..|.|+.|+. ..++||+++.|..|+|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34556799999999999999999999999999999999999999999999999986 357899999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEecCCCEEEEEE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~~~~------~~~~i~~l~fspd~~~Llags 625 (761)
.-..+.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........|. .+..+..+++.|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 777788999999999999998765 3456689989888754433222222222 234578999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004327 626 IENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 701 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fs 701 (761)
.|..|+|||+.+++.++.|++ |.+....+..+|.|.||++.. |.++.+||+.++ +|+....+|...|+.+.|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeec
Confidence 999999999999999999986 667788899999999999987 999999999988 8999999999999999999
Q ss_pred CCCCEEEEEEcCCcEEEEECCCCc
Q 004327 702 PTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 702 pdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
+|.++|++++.||.|.||.+....
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred ccchhheeecCCceEEEEECchhH
Confidence 999999999999999999986543
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=6.1e-21 Score=203.57 Aligned_cols=254 Identities=17% Similarity=0.279 Sum_probs=206.4
Q ss_pred cceecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE
Q 004327 459 RSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 537 (761)
Q Consensus 459 r~~d~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La 537 (761)
-.|....+..++....++.+. .-|.|++|.++|. +++|.++|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee
Confidence 347777777777777787765 5699999999884 78999999999999988888877779999999999999987555
Q ss_pred EEeCCCeEEEEecCCCCc----------e-----------------------------eEEeecCCCCeEEEEEcCCCCc
Q 004327 538 TSSADRTVRVWDTENPDY----------S-----------------------------LRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~----------~-----------------------------i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
|+.|..|..||-.-.+. . .....+|....+.++.+|+. .
T Consensus 304 -GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~ 381 (626)
T KOG2106|consen 304 -GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-N 381 (626)
T ss_pred -cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-h
Confidence 99999999998321000 0 01234688888999999985 5
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 004327 579 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 658 (761)
Q Consensus 579 llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~sp 658 (761)
.+++|+.|+.+++|+ ..+.+.......++.|+.|+|.+ .+++|+..|...++|.++...+..... +.+++++.|+|
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp 457 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP 457 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC
Confidence 566999999999999 56777777777999999999998 999999999999999999766655554 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 659 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 659 dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
+|.+|+.++ |+.|+||.+..... .....-.++..+|+.+.|++|+.+|.+-+.|-.|..|.
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999 99999999976543 22222334558999999999999988888888888884
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9e-23 Score=216.49 Aligned_cols=247 Identities=22% Similarity=0.250 Sum_probs=208.8
Q ss_pred cccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEE
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 536 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~L 536 (761)
...+|.+.+...+. ...--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 44556665554333 222335679999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEecCC--------CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 004327 537 ATSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 607 (761)
Q Consensus 537 asgs~DG~I~VWDl~t--------~~~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~ 607 (761)
++|+.||.|.+|++.. .-.++..+..|+-+|+++...+.+ +..+++++.|.+|++||+..+..+..+..+.
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998642 224578899999999999987653 4567799999999999999999999999999
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------------eEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-C
Q 004327 608 GATQMRFQPRLGRILAAAIENYISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~dg~I~IwDl~t~----------------~~i~~l~~h~~--~I~sl~~spdg~~Lasgs-D 668 (761)
.+.+++.+|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ |
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 9999999999999999999999999887532 34556778888 999999999999999999 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
|.|+|||+.+. .|++++....++|+.+.+.|-.+.++.
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceec
Confidence 99999999876 677777767888988888665544444
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=221.84 Aligned_cols=277 Identities=14% Similarity=0.222 Sum_probs=219.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC-eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 476 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
.+|+...+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 478999999999999999999999999999987765 4455555577888888874 4599999999999999998866
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 633 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~Iw 633 (761)
. -..+...+-++.+++|+.+| .+++.|++|-.|++.++.+......+. +.++|.++.|+|.+++|++.+.||.|+||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 34555567889999999886 566688889999999999877776665 56789999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC--------CCCEEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 634 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 634 Dl~t~~~i~~l~~h--------~~~I~sl~~spdg~-~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
|+.++.+...+.+- ...+..++|+|+|. +++.+.|+.|++|+..+......+. ...+...+.++.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877665431 33567789999955 5555559999999998874322222 22334459999999999
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 705 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.||++++.+|.|.|||+++-.. ......|.+++|.|+..-|-.-..-|...+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999988222 3345679999999998766555555544443
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.8e-22 Score=212.55 Aligned_cols=242 Identities=20% Similarity=0.319 Sum_probs=197.6
Q ss_pred ccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCc---------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 518 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 518 ~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~---------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
..|.+.|+.+++-|. ..+|++.+..+.|.|||...... +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 369999999999995 45677788899999999864321 12378899998899999999888899999999
Q ss_pred cEEEEECCCCee-------eeEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEE
Q 004327 588 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 656 (761)
Q Consensus 588 ~I~vWDl~t~~~-------~~~~~-~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~~ 656 (761)
.|++||+..... ...+. +...|..++|++-. ..|.+++.|+.+.|||++ +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975332 22333 34568899999954 456677788999999999 56777888899999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEECCCCc--------
Q 004327 657 NTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK-------- 725 (761)
Q Consensus 657 spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~-------- 725 (761)
+|-+ .+||+|+ |++|++||+++.. .+++.+.+|+..|..+.|+|.. ..|++++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9965 5667777 9999999999765 5899999999999999999987 567778889999999985421
Q ss_pred -------EEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEcC
Q 004327 726 -------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 761 (761)
Q Consensus 726 -------~~~l~~h~~~V~slafspdg~-~LaSgs~DG~I~IWd 761 (761)
+..-.+|...|..+.|+|+.. .|++++.|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124458999999999999986 677889999999995
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-21 Score=197.67 Aligned_cols=258 Identities=19% Similarity=0.304 Sum_probs=199.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC----CCeEEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 548 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~----t~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VW 548 (761)
..+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|++++|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35789999999999999999999999999999954 3456677889999999999966 58999999999999999
Q ss_pred ecCCCC--------ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 004327 549 DTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 619 (761)
Q Consensus 549 Dl~t~~--------~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~ 619 (761)
.-.... ....++....+.|+++.|.|.. ...+++++.||.||||+.-.--.+........+..+.-
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~----- 163 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID----- 163 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-----
Confidence 752111 1234666778899999999863 45678899999999998764322222221111111100
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CceeEEEee
Q 004327 620 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELS 689 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd---g~~LasgsDg------~I~IWdl~s~~-~~~~i~~l~ 689 (761)
....+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++.
T Consensus 164 -----------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 164 -----------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred -----------------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 11125566788889874 3578888865 89999887654 556777888
Q ss_pred cCCCceEEEEEeCCC----CEEEEEEcCCcEEEEECCCCc--------------------EE-EEccCCCCeeEEEEeCC
Q 004327 690 CTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTV 744 (761)
Q Consensus 690 ~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~~~~--------------------~~-~l~~h~~~V~slafspd 744 (761)
.+..+|+.++|.|+- ..|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 999999999999964 5688899999 9999987311 11 46689999999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 004327 745 NGMVASASHDKCVKIWK 761 (761)
Q Consensus 745 g~~LaSgs~DG~I~IWd 761 (761)
|.+|++.++||+||+|+
T Consensus 300 GtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeEEeecCCCceeeehh
Confidence 99999999999999996
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.3e-21 Score=196.90 Aligned_cols=283 Identities=21% Similarity=0.334 Sum_probs=219.4
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeE----------EEE-----eccCCcceEEEEEcC-CCCEE
Q 004327 474 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV----------KST-----LEEHTQWITDVRFSP-SLSRL 536 (761)
Q Consensus 474 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~----------~~~-----l~~h~~~V~~v~fsp-dg~~L 536 (761)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++.... +.. -.+|.-.|.++.|.| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567999999999988 789999999999999999875321 111 136888999999999 66688
Q ss_pred EEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEE
Q 004327 537 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 613 (761)
Q Consensus 537 asgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g--~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~ 613 (761)
.+++.|.+++|||.++... ...|+ ..+.|++-+++|-. ..++++|..|-.|++.|+.+|.+.+.+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998654 33333 55778888888753 46888888999999999999999998884 46799999
Q ss_pred EecCCCEEE-EEEcCCeEEEEECCCC-eEEEEE--------------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 614 FQPRLGRIL-AAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 614 fspd~~~Ll-ags~dg~I~IwDl~t~-~~i~~l--------------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
|+|...+++ +|+.||.|++||++.. -+...+ ..|.+.|.+++|..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999888755 5667999999999864 333332 24677899999999999999998 999999999
Q ss_pred CCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004327 677 GSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 751 (761)
Q Consensus 677 ~s~~~~~~i~~l~~~~----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSg 751 (761)
.++.....-..-..+. ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+=....++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875322111111111 1122 22 334444555566689999999888887 667898899999999998899999
Q ss_pred ECCCeEEEc
Q 004327 752 SHDKCVKIW 760 (761)
Q Consensus 752 s~DG~I~IW 760 (761)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.4e-20 Score=197.90 Aligned_cols=295 Identities=14% Similarity=0.165 Sum_probs=227.3
Q ss_pred CCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEE---eccC-CcceEEE
Q 004327 452 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWITDV 527 (761)
Q Consensus 452 ~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~---l~~h-~~~V~~v 527 (761)
++.+....+|+|.++....+++ ..+..|..+.|+|.+..|++....+.+.+|+.+.+.+.++ ++.+ ...|.|+
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v 252 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCV 252 (626)
T ss_pred CCCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEE
Confidence 4556677889999887666654 4456799999999655555555578999999998766544 3332 3679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------
Q 004327 528 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--------- 598 (761)
Q Consensus 528 ~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--------- 598 (761)
+|.++|. +++|..+|.|.||+..+........ .|.+.|.+++...+| .++ +|+.|..|..||-.-.+
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc-cEe-ecCccceEEeccccccccccccCchh
Confidence 9999886 7899999999999998766544444 999999999999886 455 69999999999832111
Q ss_pred --eeeE------------------------------EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004327 599 --CAGV------------------------------FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 599 --~~~~------------------------------~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~ 646 (761)
.++. +-+......++.+|+.+.+++++.|+.+++|+ ..+++.+..
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~- 405 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI- 405 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-
Confidence 0000 01122345678889999999999999999999 445555443
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 647 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 647 h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
...++.|+.|+|.| .++.|. .|...+.|.++. ..+..-. ...++.++.|+|+|.+|++|+.|+.|+||.+..+.
T Consensus 406 ~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 406 IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 45788999999999 888888 999999999874 3333333 38899999999999999999999999999886544
Q ss_pred EE--EE-ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 TL--TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 ~~--~l-~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.. .. ..|..+|+.+.|++|+++|.+-+.|-.|-.|+
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 33 22 24458999999999999999999999999994
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=4.6e-22 Score=211.55 Aligned_cols=262 Identities=17% Similarity=0.301 Sum_probs=216.4
Q ss_pred CCCccccceecCCCceeEEEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE--EEEeccCCcceEEEE
Q 004327 453 PRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVR 528 (761)
Q Consensus 453 ~~d~~~r~~d~~~g~~~~~v~~l~~--H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~--~~~l~~h~~~V~~v~ 528 (761)
+....+++|+......-..+..+.. ..+-|.+|.+.|||+.|++|++-.++.|||+..... ...+....-.+.+++
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa 516 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 516 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhh
Confidence 3445667777654433333444432 346799999999999999999999999999976443 344544445678899
Q ss_pred EcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC
Q 004327 529 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 608 (761)
Q Consensus 529 fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~ 608 (761)
.+||.+..++++.||.|.|||+.+.. .++.|.+|.+.+.||+++++|.. |.+|+-|.+|+.||++++..+....+...
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999755 58999999999999999999755 55999999999999999998888888889
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~ 687 (761)
|.++.++|.+.++++|-.++.+.|....... .+.+.-|...|.++.|.+.|+++++.+ |+.+..|...-+ ..+..
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFq 670 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQ 670 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceee
Confidence 9999999999999999999999999876543 344556999999999999999999988 999999998766 33333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.. ....|.+|.++.|.++|++|+.|....||.+
T Consensus 671 sk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 SK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 32 3578999999999999999999998888865
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-23 Score=229.97 Aligned_cols=253 Identities=21% Similarity=0.370 Sum_probs=222.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 570 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl 570 (761)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34455555566777887543 456888899998877888999999999999999987664 66799999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 649 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~ 649 (761)
.|++. ..+|++|+.+|+|++||++..+.++.+.++ ..+..+.|+|-+.+++.++.|+.+.+||++..-|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 578889999999999999999988877643 5688999999999998899999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 727 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~- 727 (761)
.|.++.|+|+|++++.++ |..++|||...+ +.+.+|..|...+.++.|+|..-.++.|+.|++|++||+++...+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 789999999887 788899999999999999999999999999999999999988887
Q ss_pred EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 728 TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 728 ~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
........|.+++|+|++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 444557889999999999988887654
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2e-23 Score=230.45 Aligned_cols=239 Identities=26% Similarity=0.415 Sum_probs=215.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
..+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|+.+|.+|.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 44556789999999999778899999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCe
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~dg~ 629 (761)
+..+ .++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+..+. .+.++.|+|+|.+++.++.|..
T Consensus 100 eeAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 9866 4889999999999999999964 55899999999999999888988888543 4678899999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
++|||+..++....|..|.+.|.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999999999999 999999999865 66666666778899999999999777
Q ss_pred EEEcCC
Q 004327 709 VIGCYE 714 (761)
Q Consensus 709 sgs~dg 714 (761)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 776654
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-20 Score=210.26 Aligned_cols=284 Identities=19% Similarity=0.295 Sum_probs=223.0
Q ss_pred ecCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 475 IPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 475 l~~H~~~V~~lafSpd--g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
++.-.+.|+++. +|. =+.++.|+.+|.+.||++.+++.++++.++...|+++.=+|--+.++.|..+|+|.+++++.
T Consensus 155 ~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 155 LKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF 233 (910)
T ss_pred eeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc
Confidence 333333377774 453 34589999999999999999999999999999999999999888999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
++. +.+|+-.-+.|++++|..||+.++++++..|.+.+||++..+...... +.+.+....|.|....+++++.|+.+
T Consensus 234 dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 234 DKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred CcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 774 777774459999999999999999999999999999999887776655 33556666676666666666666654
Q ss_pred EEE--ECCCC----------------------------------------------------------------------
Q 004327 631 SIL--DVETQ---------------------------------------------------------------------- 638 (761)
Q Consensus 631 ~Iw--Dl~t~---------------------------------------------------------------------- 638 (761)
++| |...+
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 444 31000
Q ss_pred ----------------------------------------eE-EEEEcCCC------CCEEEEEEcCCCCEEEEEe-CCe
Q 004327 639 ----------------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DEL 670 (761)
Q Consensus 639 ----------------------------------------~~-i~~l~~h~------~~I~sl~~spdg~~Lasgs-Dg~ 670 (761)
.. .+.+ .+. ..+++++.++.|++.+.|. .|.
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 00 0000 111 3577888889999988888 889
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-----------------------
Q 004327 671 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----------------------- 727 (761)
Q Consensus 671 I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------------------- 727 (761)
|.+|++.++-....+..-..|+.+|+.++.+.-++.+++++.+|.+++||.++...+
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 999999887322222223578999999999999999999999999999998765411
Q ss_pred -------------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 728 -------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 728 -------------------~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2346999999999999999999999999999998
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=218.42 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=200.5
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004327 518 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 597 (761)
Q Consensus 518 ~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~ 597 (761)
..|+...+.|+|.|+|++|++++.||.|++|+.......-.++..+...|.+++... ..|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence 368888999999999999999999999999998766322334444778888888763 36779999999999999887
Q ss_pred eeeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 004327 598 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 675 (761)
Q Consensus 598 ~~~~~~-~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWd 675 (761)
..-..+ +..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 654322 2447899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE--ccCCCCeeEEEEeCCCCE
Q 004327 676 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGM 747 (761)
Q Consensus 676 l~s~~~~~~i~~l~----~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l--~~h~~~V~slafspdg~~ 747 (761)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..++... .+ ..+...+.++.|+|.|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98863322222111 11 344677899999999999999999999999998876 33 345556999999999999
Q ss_pred EEEEECCCeEEEcC
Q 004327 748 VASASHDKCVKIWK 761 (761)
Q Consensus 748 LaSgs~DG~I~IWd 761 (761)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=205.02 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=230.0
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-EEEEeccCC-cceEEEEEcCCCCEEEEEeCCCeEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-~~~~l~~h~-~~V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
....+.+.--..+|+|++|+.+.+.||.+-.||.|.||++...= ....+.++. ..|.+++|. ++..|++.+.+|.|.
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 34555566667889999999999999999999999999998643 345555544 679999999 556788999999999
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~Lla 623 (761)
-||+.+.+. +..+....+.|++++.+|.+ ..++.|++||.++++++..++...... ..+.+.++.|+|++.+++.
T Consensus 94 EwDl~~lk~-~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 94 EWDLHTLKQ-KYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred EEecccCce-eEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 999998764 66677778999999999996 555577779999999998887765443 2367999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEc-------C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 624 AAIENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~-------~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
|+.||.|++||..++..++... . ...-|+++.|-.++. |++|. .|+|.+||...+ ..+..+..|...
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~ad 247 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDAD 247 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcc
Confidence 9999999999999987666221 1 223477888876665 45555 999999999887 677888899999
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcE--E---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~--~---~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
|.+++..++++++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|+.+.|
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999999998877643 1 45578999999999876 8999999998875
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=204.28 Aligned_cols=276 Identities=16% Similarity=0.222 Sum_probs=222.0
Q ss_pred CcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCe
Q 004327 424 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKK 502 (761)
Q Consensus 424 ~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~ 502 (761)
..++....++.++++|+++++|-.. |..-..+..+.--..+|.+++|.|+|. .+++++....
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvD-----------------Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVD-----------------GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEec-----------------CccChhheeeeeccCccceeeecCCCceEEEecccceE
Confidence 3445555688889999999998331 222224555666677899999999999 8999999999
Q ss_pred EEEEEcCCCeEE--EEeccCC-cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 004327 503 AVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 503 I~VWdl~t~~~~--~~l~~h~-~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
++.||+.+.+.. ....++. ..+.....++++++|+..+..|.|.|....++.. +..++ -.+.|..++|+.++..+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEE
Confidence 999999887654 3334444 3577788899999999999999999999988664 55554 46789999999998777
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCE
Q 004327 580 LCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQV 651 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~~~~~~~~~~~~i--~~l~fspd~~~Llags~dg~I~IwDl~t------~~~i~~l~~h~~~I 651 (761)
+++|+ +|.|++||++...+++.+...+.+ ++++.++++.+|++|+..|.|.|||.++ .+++..+..-...|
T Consensus 360 ~~~~~-~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 360 LASGG-TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEEcC-CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 75555 889999999999999999877765 6678889999999999999999999653 46777777777889
Q ss_pred EEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 652 HSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 652 ~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~~---~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
+++.|++|..+|+.++ ++.+++-.+.+. ..+..+.. .-+.|+|++|+|.+.++++|...|.|.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999988 668999988765 33333333 34568999999999999999999999999874
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=202.92 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=202.3
Q ss_pred CeEEEEEcCCCeEEEEeccC-CcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 004327 501 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h-~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
.++.+||+.+|.....+++. ...-.++..- ++.+++++.. ...|.+|.+....... .+.--.++|.+++-+|+| +
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G-~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLG-Y 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCc-e
Confidence 46999999999999888765 2211222221 3356666654 4579999987654322 344456889999999997 4
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEEEcCCC
Q 004327 579 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLKLQGHK 648 (761)
Q Consensus 579 llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~---------t~~~i~~l~~h~ 648 (761)
+++.|...|.|++|.+.+|..+..+.. --.|+|+.|+.|+.+|++++.||.|.+|++- +.++++.|..|.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 555666889999999999999888763 3569999999999999999999999999763 346788899999
Q ss_pred CCEEEEEEcCCC--CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 649 NQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 649 ~~I~sl~~spdg--~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
-+|+.+...+.| .+|++++ |.++++||+..+ ..+..+. ....+.+|+++|.+..+++|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999999887653 5788888 999999999887 4444443 46789999999999999999999999988874432
Q ss_pred -----------------EEEEccCCC--CeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 -----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 -----------------~~~l~~h~~--~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 115668888 999999999999999999999999997
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=195.94 Aligned_cols=258 Identities=19% Similarity=0.294 Sum_probs=214.8
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 004327 493 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 572 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~f 572 (761)
.|++.-.+++++ ...++.+.+|.+.|+.++....-.++.+++.|.+.+||.++++.+ +..|.+|.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEe
Confidence 344555555533 245677889999999999987777999999999999999999875 8999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEC------CC--------Ce--------------------------eeeEEe-cCCCeeE
Q 004327 573 HPSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQ 611 (761)
Q Consensus 573 sp~g~~llasgs~Dg~I~vWDl------~t--------~~--------------------------~~~~~~-~~~~i~~ 611 (761)
++.+ .++++++.|++-.||.. .. ++ ++..+. +...+.+
T Consensus 199 h~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred cccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9985 67779999999999962 11 00 111122 2234667
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004327 612 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 690 (761)
Q Consensus 612 l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~ 690 (761)
..|-..+..+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+ |.++++||++. ....+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecc
Confidence 77888889999999999999999999999999999999999999999999999999 99999999983 3467888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 691 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 691 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|...|+++.|..+.+ +++|+.|.+|+|||+++-+.. ......++++.++.+..+.+|+.--++..|++||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998876 899999999999999886543 4456678899999998888888888888999987
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.6e-21 Score=192.39 Aligned_cols=234 Identities=18% Similarity=0.273 Sum_probs=191.6
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004327 520 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 599 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~ 599 (761)
....|++|.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++ .-+++|+.||.|+.+|++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence 35789999999999999999999999999998764 4445568999999999975 3456899999999999999998
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 600 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 600 ~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
...-.+..++.|+.+.+..+.+++|+.|+.|++||.+.......+. ....|.++... +..|++|. |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 8888899999999999999999999999999999999866665555 34578888764 55566655 99999999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC-----cEEEEccCCC---------CeeEEEEeCC
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDK---------LVSSLAASTV 744 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~-----~~~~l~~h~~---------~V~slafspd 744 (761)
..... ...-...+..+.++++.|++.-+++++-||.|.+=.++.. +...+..|.. +|++|+|+|-
T Consensus 165 ~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 64322 1222334567899999998888999999998877655544 2336666643 6999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 004327 745 NGMVASASHDKCVKIWK 761 (761)
Q Consensus 745 g~~LaSgs~DG~I~IWd 761 (761)
...||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1.9e-20 Score=206.49 Aligned_cols=357 Identities=17% Similarity=0.238 Sum_probs=257.6
Q ss_pred cccCCCCcceEEEEecCCCccccccCCcccccCCeeeccccCCce-eeccCCCC---CCCCCccccceecCCCceeEEEE
Q 004327 398 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNV-ESFLSPDD---ADPRDRVGRSAEVGKGFTFTEFQ 473 (761)
Q Consensus 398 ~~~~~s~~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v-~~~~s~~~---~~~~d~~~r~~d~~~g~~~~~v~ 473 (761)
...+++.++++++|.++...++-.....+..+. |+.-+-. ..|..+.. .-++..-.++|...+...+....
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc-----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 445677789999999986655444443333322 1111111 12222221 12344455777755556667778
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC----CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~----t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+.||.+.|..++|.|.|++|++++.|-+-+||-.- +...+..-.-|...++|++|-+....|++|...+.+++|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 899999999999999999999999999999998643 1223333456888899999998767888988889999997
Q ss_pred cCC-------------------------------------------CCc-------------------------------
Q 004327 550 TEN-------------------------------------------PDY------------------------------- 555 (761)
Q Consensus 550 l~t-------------------------------------------~~~------------------------------- 555 (761)
... +..
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 540 000
Q ss_pred -eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCC
Q 004327 556 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 556 -~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg 628 (761)
.+..+.||...|++++.+|++ ++++++... ..|++|+..+...+..+..+ -.|+.++|+||+++|++++.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 122355799999999999996 567676543 46999999987777766543 4689999999999999999999
Q ss_pred eEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEE--EeecCCCceEEEEEe
Q 004327 629 YISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCTGNKFHSCVFH 701 (761)
Q Consensus 629 ~I~IwDl~t~~----~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~--~l~~~~~~I~sl~fs 701 (761)
++.+|...... .....+.|..-|.++.|+|++.++++++ |.+|+||....... .++. ....+...|+.++|.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEee
Confidence 99999875431 2233677999999999999999999999 99999999877532 2222 334467889999887
Q ss_pred CCC-----CEEEEEEcCCcEEEEECC------CCcEE-------EEccCCCCeeEEEEeCCC----------CEEEEEEC
Q 004327 702 PTF-----PSLLVIGCYETLELWNMT------ENKTL-------TLSAHDKLVSSLAASTVN----------GMVASASH 753 (761)
Q Consensus 702 pdg-----~~L~sgs~dg~I~IwDl~------~~~~~-------~l~~h~~~V~slafspdg----------~~LaSgs~ 753 (761)
|-. ..+++|-..|.|.+|... +.... ....|...|+.+.|.|.. ..|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 732 357888889999999865 11111 234677889999999752 26799999
Q ss_pred CCeEEEcC
Q 004327 754 DKCVKIWK 761 (761)
Q Consensus 754 DG~I~IWd 761 (761)
|..++|++
T Consensus 754 D~~vri~n 761 (764)
T KOG1063|consen 754 DESVRIFN 761 (764)
T ss_pred cceeEEee
Confidence 99999985
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.8e-20 Score=198.53 Aligned_cols=294 Identities=18% Similarity=0.258 Sum_probs=212.9
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEEcCC----CeEEEEeccCCcceEEEEEcC-CCCEEEE
Q 004327 466 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLAT 538 (761)
Q Consensus 466 g~~~~~v~~l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~v~fsp-dg~~Las 538 (761)
...+.....++-|.++|+|++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.++.|+| +...|++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34456667788899999999999943 5899999999999999952 234566788999999999999 4568999
Q ss_pred EeCCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEe
Q 004327 539 SSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQ 615 (761)
Q Consensus 539 gs~DG~I~VWDl~t~~~~-i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~-~~~~~-~~~~i~~l~fs 615 (761)
.++||+|++-|+++.... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999875421 122222344567788888766665 555556999999997654 33232 34579999999
Q ss_pred cCCCE-EEEEEcCCeEEEEECCCC---e-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC-CCceeEEEe
Q 004327 616 PRLGR-ILAAAIENYISILDVETQ---V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 688 (761)
Q Consensus 616 pd~~~-Llags~dg~I~IwDl~t~---~-~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~-~~~~~i~~l 688 (761)
|...+ +++++.|++++|||++.- . ++.....|...|.+.+|+|.+-.|++.+ |+.|+|||..-- ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 97655 667778999999999853 2 2344556999999999999876677777 999999998410 111111111
Q ss_pred e---cCCCc--eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCC-CCeeE-EEEeCCCCEEEE-EECCCeEEE
Q 004327 689 S---CTGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNGMVAS-ASHDKCVKI 759 (761)
Q Consensus 689 ~---~~~~~--I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~V~s-lafspdg~~LaS-gs~DG~I~I 759 (761)
. .+... .....|.|+..+|+++-.-..|-|||-..++.+ .+.... ..|.+ ..|+|-+..+++ ++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 11122 345689999999999999999999999888855 433222 24444 479998884554 457789998
Q ss_pred c
Q 004327 760 W 760 (761)
Q Consensus 760 W 760 (761)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 140
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=204.79 Aligned_cols=270 Identities=18% Similarity=0.286 Sum_probs=214.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+||+|+.||+.+++|+.|+.|.||.-.-.. +..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILK- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eee-
Confidence 699999999999887775 4689999999999999999999999999999999999999999999999876433 222
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 640 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~ 640 (761)
..|.+.|.|+.|+|-. ..+++|+- ...-+|.... +.+...+....+.+.+|..||.+++.|-.+|+|.+-+-...+.
T Consensus 90 YSH~D~IQCMsFNP~~-h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-HQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchH-HHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 3499999999999984 66668873 3577888763 3344444556788999999999999999999999986543332
Q ss_pred EEE--EcCCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004327 641 RLK--LQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 641 i~~--l~~h~~~I~sl~~spdg-----~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~ 712 (761)
+.. -.+.+++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-...+-...|+.+.++|.++++|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 222 22467899999999964 4566666 66777777653 233323333455678899999999999999
Q ss_pred CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 713 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 713 dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|+.+++|..+.-..-++...+.+|+.++..|++.+++.|+.||+|..|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999765544447777889999999999999999999999998764
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.1e-20 Score=190.97 Aligned_cols=285 Identities=19% Similarity=0.339 Sum_probs=219.0
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEEcCCCe---EEEEe--ccCCcceEEEEEcCC----CCEEEE
Q 004327 473 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 538 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSp-----dg~~Lasgs~Dg~I~VWdl~t~~---~~~~l--~~h~~~V~~v~fspd----g~~Las 538 (761)
.....|+.+|..++|++ +...+|+++ ...|.+|.....- .+..+ ..|......++|+-+ ..++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999985 233566665 4678888765432 33333 247778888999764 347899
Q ss_pred EeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEEEE
Q 004327 539 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRF 614 (761)
Q Consensus 539 gs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----~~~~i~~l~f 614 (761)
++.-|.|+|.|+.+... ...+.+|...|+.|.|+|+...++++|+.|..|++|++.+..|+..|- +...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998764 788999999999999999999999999999999999999999999886 4456999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeE------EE----------------------EEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 615 QPRLGRILAAAIENYISILDVETQVC------RL----------------------KLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 615 spd~~~Llags~dg~I~IwDl~t~~~------i~----------------------~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
++++.+|++++.|..|.+|++...+. .. +-..|...|-|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 99999999999999999999973211 10 112356666666664 5778887
Q ss_pred e-CCeEEEEECCC-C----------CCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCcEEEEECCCCcEE---EE
Q 004327 667 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTL---TL 729 (761)
Q Consensus 667 s-Dg~I~IWdl~s-~----------~~~~~i~~l~~~~~~I~s--l~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l 729 (761)
+ ++.|..|.... . .....+.++.-....|+- .+|.+-.+.|+.|...|.|++||++..... ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 99999998721 1 111233344444444444 456777899999999999999999887764 22
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 730 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 730 ~--~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
. .....|...+|+.|+.+|+..++|+.|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 3346799999999999999999999999886
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2e-21 Score=216.35 Aligned_cols=222 Identities=19% Similarity=0.363 Sum_probs=184.4
Q ss_pred cccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC-CCC
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLS 534 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp-dg~ 534 (761)
.+.+|+..+...-..+..|..|+..|++++|++ ...+|++|+.||+|++||+...+...++.+....|.+|.|+| .+.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 444556555332334557889999999999998 556899999999999999999888889989999999999999 577
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEecCCCeeEE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQM 612 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--~~~~~~~~~~i~~l 612 (761)
+|+++...|.+.+||++.+..+...+..|.++|.|+.|+|+ ..+||+|+.|+.|+|||+.+.+ ...++....++.++
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 89999999999999999998888999999999999999996 6788899999999999998654 45566666789999
Q ss_pred EEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEECCCC
Q 004327 613 RFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 613 ~fspd~~~Llags~---dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
.|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |-..+.+++ |++|..-.+++.
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99998777665554 779999999876 56778888999999999976 345667777 887766555543
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=205.00 Aligned_cols=281 Identities=15% Similarity=0.214 Sum_probs=203.4
Q ss_pred ccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 004327 428 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 507 (761)
Q Consensus 428 ~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 507 (761)
..+++++.+..++.|.+|.... ..+. ..-..+.....|.+.|..+.|.|....|++++.|.+|++||
T Consensus 62 n~eHiLavadE~G~i~l~dt~~---------~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKS---------IVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred CccceEEEecCCCceeeecchh---------hhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 4456777777888887772211 1111 01112455678999999999999666899999999999999
Q ss_pred cCCCeEEEE--eccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCc------e--------------------eE
Q 004327 508 TESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LR 558 (761)
Q Consensus 508 l~t~~~~~~--l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~------~--------------------i~ 558 (761)
++..+++.. +.+|...|.+++|.+. ...|++|+.||.|.|||++.... + +.
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999888866 8899999999999995 45789999999999999874331 0 11
Q ss_pred EeecCCCCeEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEe------c------CCCeeEEEEecCCCEEE
Q 004327 559 TFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK------C------QSGATQMRFQPRLGRIL 622 (761)
Q Consensus 559 ~~~~h~~~V~s---l~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~~~------~------~~~i~~l~fspd~~~Ll 622 (761)
....+...|.+ +.+..|. ..|++++. |+.|+|||+++........ . .-++.++..+..|.+|+
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 12234444444 4444553 45556665 9999999998755432211 1 23467888888889999
Q ss_pred EEEcCCeEEEEECCCC--eEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 623 AAAIENYISILDVETQ--VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 623 ags~dg~I~IwDl~t~--~~i~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
+.|.|+.|+.|++.+. .++..+.++.. .-..-..+||+.+|++|+ |...++|.+.+.. .....+.+|.-.|++
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTT 365 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEEE
Confidence 9999999999999864 34444444322 112335689999999999 9999999998764 345556788899999
Q ss_pred EEEeCCC-CEEEEEEcCCcEEEEECCCC
Q 004327 698 CVFHPTF-PSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 698 l~fspdg-~~L~sgs~dg~I~IwDl~~~ 724 (761)
++|.|.. .-+++++.|..++||++..+
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCc
Confidence 9998854 33777799999999999654
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.6e-19 Score=193.84 Aligned_cols=266 Identities=14% Similarity=0.179 Sum_probs=207.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H-~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
+-++.+..+++++.|.... + +.....+.+| ...|.+++|++ +..|++.+.+|+|.-||+.
T Consensus 38 ~~lAvsRt~g~IEiwN~~~----------------~--w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSN----------------N--WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred CceeeeccCCcEEEEccCC----------------C--ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 4578888999999884322 1 1233344544 56899999995 5577788889999999999
Q ss_pred CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 510 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 510 t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~-~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
+++....+....+.|++++.+|.+..++.|+.||.+..++...+..... .+...++.|.+++|+|++.. +++|+.||.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGV 177 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCce
Confidence 9999999999999999999999999999999999888888876554332 34455689999999999744 558999999
Q ss_pred EEEEECCCCeeeeEEe-----cCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 004327 589 IRYWSINNGSCAGVFK-----CQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~-----~~~----~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd 659 (761)
|++||..++..+.... ... -+.++.|-.+ +.|++|...|.|.+||...+..+..+..|...|.|++..++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 9999999988777332 112 2556666644 78999999999999999999999999999999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 660 GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 660 g~~Lasgs-Dg~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
+.++++++ |+.|..|...+... .........|...|.+++..++ .+++|+.|..+.+-
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 99999888 99988888776543 2233334566777888777666 56666666655544
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.3e-20 Score=185.25 Aligned_cols=208 Identities=19% Similarity=0.318 Sum_probs=174.1
Q ss_pred cCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCc------ee--------EEeecCCCCeEEEEEcCCCCcEEEEE
Q 004327 519 EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY------SL--------RTFTGHSTTVMSLDFHPSKEDLLCSC 583 (761)
Q Consensus 519 ~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~------~i--------~~~~~h~~~V~sl~fsp~g~~llasg 583 (761)
.|.+.|+++...+ .|+|+++|+.||.|.|||+.+... .. ..-.+|+..|.++.|.|-+.-+|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999987 689999999999999999975430 00 12346888999999999988999999
Q ss_pred eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC
Q 004327 584 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 660 (761)
Q Consensus 584 s~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~---~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg 660 (761)
+.|.+++|||.++......|+.++.|.+-+++|-.. .+++|..+-.|++.|+.++.+.+.+.+|...|.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 999999999999999999999999999999988432 45666667899999999999999999999999999999998
Q ss_pred CEEE-EEe-CCeEEEEECCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcE
Q 004327 661 EYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 726 (761)
Q Consensus 661 ~~La-sgs-Dg~I~IWdl~s~~------------~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~ 726 (761)
++++ +|+ ||.|++||++... ....+..-..|.+.|..++|+.++.++++++.|..+++|+..+|+.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 8755 555 9999999998542 1111222335667899999999999999999999999999987753
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5.2e-20 Score=190.84 Aligned_cols=244 Identities=18% Similarity=0.364 Sum_probs=188.3
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEEcC----------------CCeEEEEeccCCcceEEEEEcCC-CCE
Q 004327 475 IPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSR 535 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWdl~----------------t~~~~~~l~~h~~~V~~v~fspd-g~~ 535 (761)
...|.+.|+.+..++-+ .+.|+=+..|.|.||++. ..+++.++.+|...=+.++|+|- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677778888777744 456666788999999874 23567888999999999999993 335
Q ss_pred EEEEeCCCeEEEEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEecCCCee
Q 004327 536 LATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGAT 610 (761)
Q Consensus 536 Lasgs~DG~I~VWDl~t~~~~i--~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~---~~~~~~~~~~~i~ 610 (761)
|++|..-+.|++|...++...+ ..+.+|+..|..++|+|..+.+|++|+-||+|+|||++.+ .++.+-.+.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888888899999998876543 4677899999999999999999999999999999999987 5666656778899
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCce--
Q 004327 611 QMRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGE-- 683 (761)
Q Consensus 611 ~l~fspd~~~Llags~dg~I~IwDl~t---~~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~-- 683 (761)
.+.|+.+...|++|+.||+++|||++. +.++..|+-|..+|++|.|+|... .|++++ |..|.+||+.......
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999988899999999999999985 578889999999999999999543 444444 9999999996432200
Q ss_pred -------------eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEE
Q 004327 684 -------------CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 719 (761)
Q Consensus 684 -------------~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~Iw 719 (761)
.+..+.-....+..+.|++.-+ +|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 0111111234567788888764 455555555 4444
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.7e-20 Score=196.21 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=200.5
Q ss_pred eEEEEEcCCCCE-EEEEECCCeEEEEEcCCC--eEE--EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce
Q 004327 482 VESCHFSPDGKL-LATGGHDKKAVLWCTESF--TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 556 (761)
Q Consensus 482 V~~lafSpdg~~-Lasgs~Dg~I~VWdl~t~--~~~--~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~ 556 (761)
|.+++|+....+ +++.+.|..|++|.-... +.. ....+. .-.||+......|+++|+..++|+|||+.. +.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HHH
Confidence 899999976532 344457889999964432 222 222222 334444444458999999999999999994 566
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCCEEE-EEEcCCeEEEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISIL 633 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~--~i~~l~fspd~~~Ll-ags~dg~I~Iw 633 (761)
.+.+++|...|+++.++.. +.+|++++..|.|.|..+.++.....|.+.. .+.-+.|++..++++ +++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 8899999999999999877 4677799999999999999988888887653 356899999877655 56678999999
Q ss_pred ECCCCeEEEEE-cCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 634 DVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 634 Dl~t~~~i~~l-~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
|+....++..+ ..|..+...|||+|... +|++.+ |..|.+||++......++. ...++..++|.++|.+|++|
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEee
Confidence 99988776655 45999999999999775 555556 9999999998753333332 36788999999999999999
Q ss_pred EcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCC
Q 004327 711 GCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 745 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg 745 (761)
...|.|+.||++..+.. .+.+|...|++++|-+..
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999876644 677999999999998764
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=7.7e-18 Score=182.57 Aligned_cols=284 Identities=30% Similarity=0.504 Sum_probs=228.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-EEEEeccCCc-ceEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQ-WITDVRF-SPSLS-RLATSSA-DRTVRVW 548 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-~~~~l~~h~~-~V~~v~f-spdg~-~Lasgs~-DG~I~VW 548 (761)
.+..|...|.++.|.+++..++.++.|+.+.+|+..... ....+..+.. .+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999998876 6666666443 7777777 78777 5555445 9999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE-E
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA-A 625 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llag-s 625 (761)
++.........+..|...|.+++|+|++. ++++++. |+.+++|++..+..+..+.. ...+.++.|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99873445788889999999999999986 5556664 99999999998777777774 6679999999998744444 8
Q ss_pred cCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004327 626 IENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd 703 (761)
.|+.|.+||...+..+. .+..|...+ ...|++++.++++++ |+.+++|++..... .+..+..|...+.++.|+|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999887777 688888875 448999998888777 99999999987643 23333567889999999998
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEE-EE--ccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEcC
Q 004327 704 FPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 761 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~-~l--~~h~~~V~slafspdg~~LaSg-s~DG~I~IWd 761 (761)
+..+++++.|+.+.+||....... .. ..|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888988999999888766 33 3788889999994332455555 6888998885
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-21 Score=222.26 Aligned_cols=274 Identities=21% Similarity=0.303 Sum_probs=215.2
Q ss_pred EEEEcCCCC-EEEEEE----------CCCeEEEEEcCC--C----eEEEEeccCCcceEEEEEcCCCCE----EEEEeCC
Q 004327 484 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 542 (761)
Q Consensus 484 ~lafSpdg~-~Lasgs----------~Dg~I~VWdl~t--~----~~~~~l~~h~~~V~~v~fspdg~~----Lasgs~D 542 (761)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+ .-....++++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 478999886 566553 345666775432 2 222233 23356789999987665 8899999
Q ss_pred CeEEEEecCCC-----CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---ecCCCeeEEEE
Q 004327 543 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRF 614 (761)
Q Consensus 543 G~I~VWDl~t~-----~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~---~~~~~i~~l~f 614 (761)
|.|.+||...- ...+..+..|++.|..++|++..++++++|++||.|.|||+++-+.-..+ ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998652 12356778899999999999999999999999999999999875443333 23467999999
Q ss_pred ecCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEECCCCCCceeEE
Q 004327 615 QPRLGRILA-AAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 686 (761)
Q Consensus 615 spd~~~Lla-gs~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~~spdg~-~Lasgs--Dg--~I~IWdl~s~~~~~~i~ 686 (761)
+..-.++++ ++.+|.+.|||++..+.+..+..+.. .+..+.|+|++. .|++++ |+ .|.+||++... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 987666554 55578999999999988888876655 477899999873 444454 33 89999998653 5667
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEc
Q 004327 687 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 760 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~-~LaSgs~DG~I~IW 760 (761)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+.....++..+.|.|... .|+.++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88999999999999999999999 6777788999999999876 88889999999987
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.4e-20 Score=193.42 Aligned_cols=236 Identities=19% Similarity=0.371 Sum_probs=186.4
Q ss_pred CCCEEEEEECCCeEEEEEcCCCe---EEEE------------------eccCCcceEEEEEcCC-CCEEEEEeCCCeEEE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRV 547 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~---~~~~------------------l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~V 547 (761)
-|+|+|.|+.|..|.|||++=-. +... -.+|+..|.++.|+.+ .+.||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 1111 2369999999999875 458999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCC-EEEEEE
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 625 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~~~~i~~l~fspd~~-~Llags 625 (761)
||+.+++. ..++..|.+.|.++.|+|....++++|+.|++|.+.|++. ...-..++..+.|..+.|.|... .+++++
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999874 7788889999999999999999999999999999999994 44445667779999999999654 566777
Q ss_pred cCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 626 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 626 ~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
.||+|+-||+|.. ++++++..|..+|.+|++++.-. ++++++ |+.|++|++..... ..+..-...-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 8999999999986 99999999999999999988654 566666 99999999975432 22222222233466777888
Q ss_pred CCCE-EEEEEcCCcEEEEECCCCcEE
Q 004327 703 TFPS-LLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 703 dg~~-L~sgs~dg~I~IwDl~~~~~~ 727 (761)
+-.+ +++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 7655 556666668999999887654
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.6e-17 Score=180.12 Aligned_cols=297 Identities=28% Similarity=0.444 Sum_probs=234.9
Q ss_pred CccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCC
Q 004327 455 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 533 (761)
Q Consensus 455 d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg 533 (761)
+....+|+... .......+..|...|.+++|+|+++++++++. |+.+++|++..+..+..+.+|...|.+++|+|++
T Consensus 133 d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 133 DGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 44566666555 23567778899999999999999999988886 9999999999988999999999999999999998
Q ss_pred C-EEEEEeCCCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-ecCCCe
Q 004327 534 S-RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGA 609 (761)
Q Consensus 534 ~-~Lasgs~DG~I~VWDl~t~~~~i~-~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~-~~~~-~~~~~i 609 (761)
. ++++++.|+.|++||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 8 555559999999998885543 44 688888775 44899997 5666899999999999987654 3333 335678
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEECCCCCCceeE
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IWdl~s~~~~~~i 685 (761)
.++.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~ 364 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PL 364 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---ee
Confidence 999999988888888889889999999887766665 788889999994333566655 4 8889999998763 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEE-EEcCCcEEEEECCCCcEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~s-gs~dg~I~IwDl~~~~~~~l~~h~-~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...... ..+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 365 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 365 KTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222222 2288888888 543444 578889999999998888555444 8899999999999999999999999995
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=182.31 Aligned_cols=268 Identities=18% Similarity=0.294 Sum_probs=205.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCC------------eEEEEec-cCCcceEEEEEc-------CCCCEEEEEeC
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 541 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~------------~~~~~l~-~h~~~V~~v~fs-------pdg~~Lasgs~ 541 (761)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|.+.+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999987421 1111111 233568888886 56779999999
Q ss_pred CCeEEEEecCCCCceeEEeec--CCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeEE---ec-----CC
Q 004327 542 DRTVRVWDTENPDYSLRTFTG--HST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF---KC-----QS 607 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~--h~~---~V~sl~fsp~g~~llasgs~Dg~I~vWDl-~t~~~~~~~---~~-----~~ 607 (761)
|.-|++||.-+++. ...+.+ |-. ...+++|+|||..++ ++....|++||+ +.|.-...+ .. .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998774 333332 333 356899999998777 445789999999 555432221 11 34
Q ss_pred CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCcee
Q 004327 608 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 608 ~i~~l~fspd~~-~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~ 684 (761)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 578999999655 677888888999999999999999999999999999999999999999 8899999998643 34
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCcEEEEECCC-CcEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 685 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 685 i~~l~~~~~---~I~sl~fspdg~~L~sgs~dg~I~IwDl~~-~~~~-~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
+..+..|.. .-.-....|++++|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.++|+++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 444444433 223345678999999999999999999988 5534 777899999999999998888887754
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=217.55 Aligned_cols=243 Identities=19% Similarity=0.352 Sum_probs=201.6
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCeEEEEEcCCC------eEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEE
Q 004327 480 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 548 (761)
Q Consensus 480 ~~V~~lafSpdg~~----Lasgs~Dg~I~VWdl~t~------~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VW 548 (761)
.+.++++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34778999886665 899999999999998652 33466778999999999999654 99999999999999
Q ss_pred ecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC---eeEEEEecCCCE-EEE
Q 004327 549 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 623 (761)
Q Consensus 549 Dl~t~~~~i~~-~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~---i~~l~fspd~~~-Lla 623 (761)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986643332 2224578999999988889999999999999999998877766654444 778999998654 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 624 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 624 gs~dg---~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
++.|. .|.+||++.- .++..+.+|...|.++.|++.+ +++++++ |+.|.+|+..++ +.+.++....+++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999864 6777788999999999999976 7788877 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCcEEEEECCCCc
Q 004327 698 CVFHPTFP-SLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 698 l~fspdg~-~L~sgs~dg~I~IwDl~~~~ 725 (761)
+.|.|... .+++.+-||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999987 67778889999999987665
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-19 Score=190.37 Aligned_cols=246 Identities=17% Similarity=0.242 Sum_probs=194.6
Q ss_pred CCCccccceecCCCc-eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC
Q 004327 453 PRDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 531 (761)
Q Consensus 453 ~~d~~~r~~d~~~g~-~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp 531 (761)
..|+..++|...... .+..+..+.+. .-+|++......|+++|+..++|+|||+....+.+.+++|...|++|.++.
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~ 131 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN 131 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC
Confidence 345555665543331 22223333332 345555555558999999999999999998777888999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCC
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSG 608 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~ 608 (761)
...|||+++..|.|.|..+.++.. ...|... ...|.-+.|++..+.+|.+++++|.|.+||+.....+..+. +..+
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP 210 (673)
T ss_pred CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence 999999999999999999998664 3444433 34566899999999999999999999999998776665543 5567
Q ss_pred eeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004327 609 ATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 609 i~~l~fspd~~-~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~ 686 (761)
...++|+|... .|++.+.|..|++||++..+....+. ...+...++|.++|.+|++|. .|.|..||++... ..+.
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~ 287 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVA 287 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCce
Confidence 78899999654 56778899999999999877666654 567899999999999999999 9999999999654 5777
Q ss_pred EeecCCCceEEEEEeCCC
Q 004327 687 ELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg 704 (761)
.+..|...|++++|-+.-
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 888899999999998764
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2e-19 Score=190.59 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=200.5
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCC--CEEEEEeCCCeEEEEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLL 580 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg--~~Lasgs~DG~I~VWDl~t---~~~~i~~~~~h~~~V~sl~fsp~g~~ll 580 (761)
+|+.+......++.+.+.|++++|+|.. +++++|..-|.|-+||+.+ ....+..+..|..+|.++.|+|.....+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444555556667788999999999954 5788999999999999952 2233567888999999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEE
Q 004327 581 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 656 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~~~~~~~---~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~~ 656 (761)
++.+.||+|++-|++.......+.. ...+..+.|+.+...++++..-|.+.+||++++.. ...+.-|...|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999987654333332 23467788888888899998888999999998754 6667779999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEECCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC----CCcEEEE
Q 004327 657 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 729 (761)
Q Consensus 657 spdg-~~Lasgs-Dg~I~IWdl~s~~~~~-~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~----~~~~~~l 729 (761)
+|-. .+|++++ |++++|||++.-.... .+.....|...|.+..|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9966 5677778 9999999998744333 244455688999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 730 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 730 ~~h~~------~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..|.. ......|.|+..+|++|..-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33432 244568999999999998877787775
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=6.8e-19 Score=186.15 Aligned_cols=236 Identities=15% Similarity=0.296 Sum_probs=184.3
Q ss_pred eEEEEEcC-------CCCEEEEEeCCCeEEEEecCCCCc--eeE------------------EeecCCCCeEEEEEcCCC
Q 004327 524 ITDVRFSP-------SLSRLATSSADRTVRVWDTENPDY--SLR------------------TFTGHSTTVMSLDFHPSK 576 (761)
Q Consensus 524 V~~v~fsp-------dg~~Lasgs~DG~I~VWDl~t~~~--~i~------------------~~~~h~~~V~sl~fsp~g 576 (761)
..|++|.. .|+|+|.|+.|..|.|||+.--.. +.. .-.+|+..|.++.|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35777743 367999999999999999863211 111 123688899999999988
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004327 577 EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 577 ~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl 654 (761)
+++|++|+.|.+|++||+.++++..++. +...|.++.|+|.. ..|++|+.|++|.++|.+........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 9999999999999999999999999998 55679999999965 567888899999999999532222222245789999
Q ss_pred EEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCCCcEEEEcc
Q 004327 655 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTLTLSA 731 (761)
Q Consensus 655 ~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~~~~~l~~ 731 (761)
+|.|.....+.++ ||+|+-+|++... .++.++..|...|.+++++..-+ .+++++.|+.|++|++..........
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999876554444 9999999999765 78999999999999999998764 57788889999999987665543333
Q ss_pred CC---CCeeEEEEeCCCC-EEEEEECCCeEEEcC
Q 004327 732 HD---KLVSSLAASTVNG-MVASASHDKCVKIWK 761 (761)
Q Consensus 732 h~---~~V~slafspdg~-~LaSgs~DG~I~IWd 761 (761)
|. +...|+++.|+-. ++|.|+..+.++|||
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEee
Confidence 32 3366677777754 778888888999997
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.4e-19 Score=193.65 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=199.3
Q ss_pred EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004327 513 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 513 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vW 592 (761)
+-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.|++|+|.+...++....+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999999999999999999999999999999875 55554 456899999999876544444444444444
Q ss_pred ECCCC--------------------------------------eeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEE
Q 004327 593 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 631 (761)
Q Consensus 593 Dl~t~--------------------------------------~~~~~~~~~~~i~~l~fspd~~~Llags~d---g~I~ 631 (761)
+..-| .....+.+...|..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32211 012344566778999999999999998875 4799
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
|+++........|....+.|.++.|+|...+|++++...|+|||+... ..+..+......|.+++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988877777766778899999999999999999999999999765 55666666677899999999999999999
Q ss_pred cCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 712 CYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 712 ~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.|+.+..||+.-.... ++..|...|++++|++.-.++++|+.||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999766433 788999999999999999999999999999986
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.6e-19 Score=179.09 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=182.0
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 515 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 515 ~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~----~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
..+++|.+.|++++|+.||++|++++.|++|+||+++.-.. +++.-. .-+..+.+.|.||-..+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35789999999999999999999999999999999985321 111111 1235688999999999999998889999
Q ss_pred EEECCC---CeeeeEEe----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 004327 591 YWSINN---GSCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 657 (761)
Q Consensus 591 vWDl~t---~~~~~~~~----------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s 657 (761)
+|.+.. |.....+. +...+..+-....+.+|++++.|..|.+||++ |..+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998753 22111111 12234556666677889999999999999999 78887777666667788999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC-------
Q 004327 658 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 724 (761)
Q Consensus 658 pdg~~Lasgs-Dg~I~IWdl~s~~-----~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~------- 724 (761)
|+|++|++++ --.|+||.+--.+ ....+..+.+|...|..++|+++...+++.+.||.++|||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999974322 23455678899999999999999999999999999999997422
Q ss_pred cEE-----EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 725 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 725 ~~~-----~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+.+ .+.+-.+....++++|.|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 111 1122334455899999999887654 2345544
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.3e-18 Score=182.39 Aligned_cols=296 Identities=19% Similarity=0.273 Sum_probs=204.9
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC--
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 509 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~-- 509 (761)
++++|+.|..+++|....+... +.+..+..+..+..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~----------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPG----------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCC----------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 7899999999999933322211 1224667788899999999999999999999999999999999654
Q ss_pred ------C--------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 004327 510 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 575 (761)
Q Consensus 510 ------t--------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~ 575 (761)
+ ....+.+.+|...|..++|+|++.++++++.|..+++||+..+.. ...+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998774 8889999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEE
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 655 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~ 655 (761)
+ .++++-+.|...+.+.+.....+..... .....-.+.+. .....++|.-++.+ .....++
T Consensus 177 ~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTlk---------sFFrRls 237 (434)
T KOG1009|consen 177 N-QYVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETLK---------SFFRRLS 237 (434)
T ss_pred h-hhhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCchh---------hhhhhcc
Confidence 5 4555777787777777654433332221 00000011111 01122333222221 2345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEECCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEE
Q 004327 656 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLL 708 (761)
Q Consensus 656 ~spdg~~Lasgs-----Dg-----~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp-----------------dg~~L~ 708 (761)
|+|+|.+|++.+ ++ ..++|+-... ...+..+.+.......+.|+| -.+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 888888877643 22 2344443321 133334444444444444433 123466
Q ss_pred EEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 709 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
+....+.|+|||...-.++ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6677779999999987777 34468899999999999999999999997643
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=179.12 Aligned_cols=273 Identities=16% Similarity=0.265 Sum_probs=202.8
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 426 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 426 l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
+..+..+++.|+.++.+.+| +-.++..-+.+.+|..+|+|++||+||++|+|++.|..|.+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~-------------------D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIY-------------------DFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred eccCcceeeeeccCCcEEEE-------------------EccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 34455688999999988887 12234456678899999999999999999999999999999
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeec---CCCCeEEEEEcCCCCcEEE
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLC 581 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~---h~~~V~sl~fsp~g~~lla 581 (761)
||+..+.+++.+. ...+|+.+.|+|... .+++.-.+..-.+.++..+...+..... ......+..|++.|+ +++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIi 169 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YII 169 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEE
Confidence 9999999998885 568899999999533 3333334444556666543321111110 011122335777765 555
Q ss_pred EEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEcC--CC
Q 004327 582 SCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HK 648 (761)
Q Consensus 582 sgs~Dg~I~vWDl~t~~~~~~~~~~~--~i~~l~fspd~~~Llags~dg~I~IwDl~t~-------~~--i~~l~~--h~ 648 (761)
+|...|.+.++|..+-+++..++... .|..+.|+..+..|+.-+.|..|+.|+++.- ++ ..++.. ..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 88889999999999999998887544 6888999999999999999999999998731 11 111111 12
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 649 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
..-.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-...|++. ..|.|+||....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 3446899999999999988 558999999888 6777777766 567889999999877776 778999998643
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=5.9e-19 Score=183.08 Aligned_cols=241 Identities=22% Similarity=0.337 Sum_probs=189.8
Q ss_pred ccCCcceEEEEEcCCC--CEEEEEeCCCeEEEEecCC---------------CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 004327 518 EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 580 (761)
Q Consensus 518 ~~h~~~V~~v~fspdg--~~Lasgs~DG~I~VWDl~t---------------~~~~i~~~~~h~~~V~sl~fsp~g~~ll 580 (761)
..|.+.|..++-.+-+ .+.++-+..|.|.||++.. ...++.++.+|...=+.|+|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4677788888777644 4566667789999999852 1235678889999999999999765567
Q ss_pred EEEeCCCcEEEEECCCCeeee----EEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004327 581 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 652 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~~~----~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~---~~i~~l~~h~~~I~ 652 (761)
++|+--+.|++|...++.... ...+...|..++|+|.. +.|++|+.||.|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999998865432 12245668899999965 55777888999999999987 34443 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEECCCCcE----
Q 004327 653 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 726 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~---- 726 (761)
.|.|+.+-.+|++|+ ||+++|||++.-+....+..+..|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8999999999877778899999999999999999965 5688888999999999853221
Q ss_pred -------------EEEccC--CCCeeEEEEeCCC-CEEEEEECCCeEEEc
Q 004327 727 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 760 (761)
Q Consensus 727 -------------~~l~~h--~~~V~slafspdg-~~LaSgs~DG~I~IW 760 (761)
-.+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 022334 4568889999864 5899999999 4454
No 162
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1.8e-18 Score=188.23 Aligned_cols=113 Identities=24% Similarity=0.417 Sum_probs=96.3
Q ss_pred CCEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCCCc----eeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEEC
Q 004327 649 NQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKG----ECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM 721 (761)
Q Consensus 649 ~~I~sl~~sp-dg~~Lasgs-Dg~I~IWdl~s~~~~----~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl 721 (761)
..|+.+.|+| |...|++++ ||.|++|.+..+... ..-..+..|...|+++.|+|-. ..|+++++|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4577888888 456677777 999999999875432 3445678899999999999954 67889999999999999
Q ss_pred CCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 722 TENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 722 ~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|+||+
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 998877 8899999999999999999999999999999985
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=178.94 Aligned_cols=284 Identities=15% Similarity=0.213 Sum_probs=211.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC------CeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t------~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
.+-+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|...+.+|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345679999999999999999999999999999999863 34444443 45589999999999999999999999
Q ss_pred EEEEecCCCCceeEEeecCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----eeeEEecCCCeeEEEEecC
Q 004327 545 VRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPR 617 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~---~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~----~~~~~~~~~~i~~l~fspd 617 (761)
|.+.|+++... +..+. |. +.|+.+..+|. .++|++.+.++.|.+||++... ++...........+.|+|.
T Consensus 129 VI~HDiEt~qs-i~V~~-~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVAN-ENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeeccccee-eeeec-ccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999998553 33333 43 58999999999 5667788889999999998643 3333334456788999997
Q ss_pred CCEEE-EEEcCCeEEEEECCCCe-EEEEE------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004327 618 LGRIL-AAAIENYISILDVETQV-CRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 618 ~~~Ll-ags~dg~I~IwDl~t~~-~i~~l------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l 688 (761)
...|+ +....+.+-+||.+... .+... ......-.++.|+|.|.-|.+-- ...-.+||+.+.. ..+..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEec
Confidence 76555 55567899999998653 22221 11122335788999998887766 4456678876631 122222
Q ss_pred ec------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC------------------------cEEEEccCCCCeeE
Q 004327 689 SC------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------------------------KTLTLSAHDKLVSS 738 (761)
Q Consensus 689 ~~------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~------------------------~~~~l~~h~~~V~s 738 (761)
.. ....+.+|+|..|.. +++|+.+-.|++|.+... ....+.+|...++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 21 123467788887766 888888889999987421 12267799999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEcC
Q 004327 739 LAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 739 lafspdg~~LaSgs~DG~I~IWd 761 (761)
+.|+|...+|++.+-.+.++||-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999993
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=3.1e-17 Score=178.99 Aligned_cols=266 Identities=10% Similarity=0.183 Sum_probs=183.9
Q ss_pred EEEEECCCeEEEEEcCC-Ce--EEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCC-CCceeEEeecCCCCeE
Q 004327 494 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 568 (761)
Q Consensus 494 Lasgs~Dg~I~VWdl~t-~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t-~~~~i~~~~~h~~~V~ 568 (761)
+++...++.|.+||+.+ ++ .+..+. +.+....++|+|++++|++++ .++.|.+|+++. +...........+...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 345678899999999987765 478899999973 2221111112334567
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCC-Ce---eeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 004327 569 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 642 (761)
Q Consensus 569 sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~---~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~- 642 (761)
.++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|+++++++++. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999988887777799999999974 32 2233333345678899999999877765 5899999998632221
Q ss_pred ------EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 004327 643 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 707 (761)
Q Consensus 643 ------~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~l~~~------~~~I~sl~fspdg~~L 707 (761)
... .......+.|+|+|+++++++ ++.|.+|++... .....+..+... ......+.|+|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 223457899999999998887 789999999742 122334333221 1123468899999999
Q ss_pred EEEEc-CCcEEEEECCCCc-EEEEccC---CCCeeEEEEeCCCCEEEEEEC-CCeEEEcC
Q 004327 708 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 761 (761)
Q Consensus 708 ~sgs~-dg~I~IwDl~~~~-~~~l~~h---~~~V~slafspdg~~LaSgs~-DG~I~IWd 761 (761)
+++.. ++.|.+|++.... ...+..+ ......+.|+|||++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 5799999985432 2222222 235678999999999988775 89999984
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1e-16 Score=174.82 Aligned_cols=279 Identities=12% Similarity=0.122 Sum_probs=187.1
Q ss_pred cceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEcC-CCeE--EEEeccCCcceEEEEEcCCCC
Q 004327 459 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SFTV--KSTLEEHTQWITDVRFSPSLS 534 (761)
Q Consensus 459 r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWdl~-t~~~--~~~l~~h~~~V~~v~fspdg~ 534 (761)
.+|+......+..+..+.. .+....++|+||+++|++++ .++.|.+|+++ +++. +.... .......++|+|+++
T Consensus 15 ~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~ 92 (330)
T PRK11028 15 HVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGR 92 (330)
T ss_pred EEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCC
Confidence 3444432223344555543 35577899999999987765 57899999986 3332 22222 334567899999999
Q ss_pred EEEEEeC-CCeEEEEecCCCCce---eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-------EE
Q 004327 535 RLATSSA-DRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------VF 603 (761)
Q Consensus 535 ~Lasgs~-DG~I~VWDl~t~~~~---i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~-------~~ 603 (761)
+|++++. ++.|.+|++++.... +..+. +.....+++|+|+++.++++...++.|.+||+.+...+. ..
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 9888875 889999999753321 22222 234467789999998888888888999999998633221 12
Q ss_pred ecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEcCC------CCCEEEEEEcCCCCEEEEEe--CCe
Q 004327 604 KCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------KNQVHSVCWNTSGEYLASVS--DEL 670 (761)
Q Consensus 604 ~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t--~--~~i~~l~~h------~~~I~sl~~spdg~~Lasgs--Dg~ 670 (761)
........+.|+|++++++++.. ++.|.+||++. + +.+..+..+ ......+.|+|++++++++. ++.
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence 23455778999999999988877 89999999973 2 333333221 12334688999999999886 679
Q ss_pred EEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECC--CCcEEE--EccCCCCeeEEEE
Q 004327 671 VRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTLT--LSAHDKLVSSLAA 741 (761)
Q Consensus 671 I~IWdl~s~~-~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~--~~~~~~--l~~h~~~V~slaf 741 (761)
|.+|++.... ....+..... ......+.|+|+|++|+++.. ++.|.+|+++ ++.... .........|++|
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 9999996542 2223333332 234567899999999998886 7799999874 344331 1122344555555
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.7e-19 Score=177.14 Aligned_cols=285 Identities=19% Similarity=0.199 Sum_probs=201.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
++..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+....++ .|...|+.+...|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4566789999999999998774 8899999999999999988888887 67788999998887 5788899999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCC-----C---cEEEEEeCCC-cEEEEECCCCeeeeEEe-----cCCCeeEEEEe
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSK-----E---DLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 615 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g-----~---~llasgs~Dg-~I~vWDl~t~~~~~~~~-----~~~~i~~l~fs 615 (761)
+....+ ...|.-.++++.|++.. . .+++.-+... .+.+-|......+.... ..+.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986432 23344455666665321 0 1111111100 11112221111111111 11334555533
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCCeEE----------EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC
Q 004327 616 P-RLG--RILAAAIENYISILDVETQVCR----------LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 616 p-d~~--~Llags~dg~I~IwDl~t~~~i----------~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
. ++. .+++|..+|.|.+||+.++..+ .....|..+|.++.|.+.-..=++++ +..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 3 222 2455667899999999997433 33446889999999987544444555 77889998875421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 682 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 682 -~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
...-.+.......|..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|++++|+|+..++|+++.|+.|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 1122233334556888899999999999999999999999999988 77789999999999999999999999999999
Q ss_pred cC
Q 004327 760 WK 761 (761)
Q Consensus 760 Wd 761 (761)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 97
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=9.7e-19 Score=189.74 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=198.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC--------CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 545 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~--------t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I 545 (761)
++..|.+.|+.+.|.+-...|++++.||+|++|++. ..+.+.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 788899999999999999999999999999999982 236778999999999999999999999999999999
Q ss_pred EEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEE
Q 004327 546 RVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMR 613 (761)
Q Consensus 546 ~VWDl~t---------~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~i~~l~ 613 (761)
+.|++.. .......+.||.+.|+.+++++.... |++|+.||+|+.|+...... .+|. ..+-...+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 9996541 12334578899999999999998554 56999999999999876555 3332 223345555
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCC-------CCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004327 614 FQPRL-GRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 614 fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~h-------~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~ 684 (761)
+-... .+.++...-+.-.++|.+....+..+... ...+.-+.++|.+.+.+++. |+.|+++|..++ ..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---~~ 523 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---KI 523 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---cc
Confidence 54432 22333333444445555554444433321 23577889999999888888 999999999888 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccC
Q 004327 685 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 732 (761)
Q Consensus 685 i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h 732 (761)
++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 8888899999999999999999999999999999999777665 33344
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=176.76 Aligned_cols=266 Identities=17% Similarity=0.302 Sum_probs=190.9
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCce-eEEeecCC-CCe
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS-TTV 567 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VWDl~t~~~~-i~~~~~h~-~~V 567 (761)
..+|++...|.|++||..++..+..++++...+..++|.. ....+.+|+.||+|++||++..... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788999999999999999999999999999999999987 4568999999999999999875542 34455555 456
Q ss_pred EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCee-eeEEe--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe
Q 004327 568 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 639 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs----~Dg~I~vWDl~t~~~-~~~~~--~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~ 639 (761)
.|++..-. ..++++|. .+-.|.+||++.... +..+. +...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 46776664 467899999998765 55443 66789999999954 678888899999999998642
Q ss_pred ---EEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeC
Q 004327 640 ---CRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 702 (761)
Q Consensus 640 ---~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~------------~~~I~sl~fsp 702 (761)
.+.....|...|.++.|..++ +.|.+-+ .+...+|++..+.. ...+... -..+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 222333477889999999887 3354445 99999999987642 2111111 01122222223
Q ss_pred CCCEEEEEEc-CCcEEEEECC---CCcEE----EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 703 TFPSLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~-dg~I~IwDl~---~~~~~----~l~-~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+...+++++. .+...++-+. ++... .+. +|...|.++.|...+.+++||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 3344444444 5555555443 33222 333 4778899999998899999999999999995
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.8e-17 Score=172.91 Aligned_cols=211 Identities=15% Similarity=0.293 Sum_probs=179.1
Q ss_pred EeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 516 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 516 ~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
.+.+|+++|.+++|+| +...||+|+.|.+|.||.+..+. .++..+.+|...|--+.|||...++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3569999999999999 55689999999999999986543 3467899999999999999999999999999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Q 004327 589 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~-~I~sl~~spdg~~Lasgs 667 (761)
|.+||+.+++.+..+.+..-|.++.|+.+|..|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999889999999999999999999999999999999999998877876 344566888888666664
Q ss_pred ----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCcEEEEECCCCcEE
Q 004327 668 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL 727 (761)
Q Consensus 668 ----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~~~~~~ 727 (761)
+..+-+||...-.....+.++.. .+.|.--.|++|.+.|+.++ .|+.|+.|.+......
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 66899999987766655666654 55677778899988776655 5789999999877643
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=4.7e-19 Score=198.20 Aligned_cols=275 Identities=18% Similarity=0.290 Sum_probs=218.2
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
..++.+.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|++++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEE
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~-----~~~~~~~i~~l~fspd~~~Llag 624 (761)
+.++. ++..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+....-+.++.|...+..++++
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99865 588999999999999999963 67789999999998111111 11222345667777778889999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 625 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
+.|+.-..|.+.-.. .+...+.-+.++.+- .+.+++- +..+++|++.++ ...+.+.+|...+..+.++|
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999888777654321 122222222232232 2333343 779999999888 67888889999999999999
Q ss_pred CCCEE-EEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 703 TFPSL-LVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 703 dg~~L-~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
-...+ ..++.||...|||+-.+..+ .+.+ ...+...+|++||..++....-|.+.|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 87654 57788999999999988877 3334 4567788999999988888888888775
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=167.13 Aligned_cols=286 Identities=19% Similarity=0.250 Sum_probs=197.0
Q ss_pred cccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECC-------CeEEEEEcCC---------CeEEEEec-
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE- 518 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~D-------g~I~VWdl~t---------~~~~~~l~- 518 (761)
-+.+.....+...-.-+.|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+.
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT 120 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH
Confidence 333433333333334456788999999999999 66677777543 3578998753 23344443
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 004327 519 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~-----~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vW 592 (761)
.+-+.|.||.|.|++..|++-. |..|.+|++......+..+ .++....++-+|+|. ..+.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4556899999999999998876 8889999998766533322 235567888899983 33444444 38999999
Q ss_pred ECCCCeeeeEEe--cCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe
Q 004327 593 SINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS 667 (761)
Q Consensus 593 Dl~t~~~~~~~~--~~~~i~~l~fspd~~~-Llags~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs 667 (761)
|+++.++...+. +...+..+.|+|+..+ |++++.||.|+|||.+. ..++..+.+|..+|.++.|+|.. .+|++++
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 999988777665 3345899999998766 55566789999999986 46889999999999999999965 4566666
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 746 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~ 746 (761)
|..|.+|...+-.... .+.|..|....-.......++ -+.++.+.++..|+..|++++|+.-..
T Consensus 279 SDs~V~Lsca~svSSE~-------------qi~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQ-------------QIEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred CCceeEEEecccccccc-------------ccccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCC
Confidence 9999999875432111 111111110000000011222 345555667889999999999997665
Q ss_pred -EEEEEECCCeEEE
Q 004327 747 -MVASASHDKCVKI 759 (761)
Q Consensus 747 -~LaSgs~DG~I~I 759 (761)
++|+-+.||.|.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 6788899999876
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=183.04 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=227.2
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-ccCCcceEEEEEcC--CCCEEEEEeCCCeEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 546 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~ 546 (761)
.....|..|.+.|..|.|+..|..|++|+.|..|.+||...++....+ .+|...|.-..|.| +...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344568899999999999999999999999999999999988877666 57999999888988 356799999999999
Q ss_pred EEecCCCCce--eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec----CC---CeeEEEEecC
Q 004327 547 VWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQPR 617 (761)
Q Consensus 547 VWDl~t~~~~--i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~----~~---~i~~l~fspd 617 (761)
+=.+...++. ...+..|.++|..++.-|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 9887654443 3456679999999999999999999999999999999987765544432 12 3577888887
Q ss_pred CC-EEEEEEcCCeEEEEECCCCe------EEEEEcC------CCCCEEEEEEcCCC-CEEEEEeCCeEEEEECCCCCC--
Q 004327 618 LG-RILAAAIENYISILDVETQV------CRLKLQG------HKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK-- 681 (761)
Q Consensus 618 ~~-~Llags~dg~I~IwDl~t~~------~i~~l~~------h~~~I~sl~~spdg-~~LasgsDg~I~IWdl~s~~~-- 681 (761)
.. .+++++.|-.+++||.+.-. .+..+.. ..-.|+|++|+.++ .+|++-.|..|++|.-..+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 65 68888899999999987532 1233322 23469999999665 566666688999995433211
Q ss_pred c-------eeEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEE
Q 004327 682 G-------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 682 ~-------~~i~~-l~~~~~--~I~sl~-fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~La 749 (761)
. ..+.. +++|.+ .|..+- |-|...|+++|+.-|.|.||+-++++.+ .+.+....|+||.-+|.-.+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 0 11222 555544 355554 5688899999999999999999999988 4445555899999999999999
Q ss_pred EEECCCeEEEc
Q 004327 750 SASHDKCVKIW 760 (761)
Q Consensus 750 Sgs~DG~I~IW 760 (761)
+++-|.-||||
T Consensus 453 sSGid~DVKIW 463 (559)
T KOG1334|consen 453 SSGIDHDVKIW 463 (559)
T ss_pred ccCCccceeee
Confidence 99999999999
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8e-17 Score=184.36 Aligned_cols=279 Identities=16% Similarity=0.229 Sum_probs=208.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccC---CcceEEEEEcC--CCCEEEEEeCCCeEEEEecCCC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h---~~~V~~v~fsp--dg~~Lasgs~DG~I~VWDl~t~ 553 (761)
...-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+.. |..++++|+.||.|+||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345567889998889999988889999999999988777543 35688998866 4668999999999999974322
Q ss_pred C----ceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEec-CCC
Q 004327 554 D----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQP-RLG 619 (761)
Q Consensus 554 ~----~~i~~~~~-------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~--~i~~l~fsp-d~~ 619 (761)
. ..+..+.+ ..+.-.-++|....++++++|+ -..|+|||.....++..+.... .++.+.-+- .++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 11221111 1111234577777677776665 7899999999888887776443 355554433 468
Q ss_pred EEEEEEcCCeEEEEECCCC---eEEEEEcCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEECCCCCCceeEEEeecC-
Q 004327 620 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT- 691 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~---~~i~~l~~h~~~--I~sl~~spdg~~-Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~- 691 (761)
.+++|..||.|++||.+.. ..+..++.|... |..+.+.+.|.- |++++ ||.|++||++.... .....+..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999864 356677788887 999999887644 88888 99999999998522 222222222
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc-------CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 692 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 692 --~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
++..+++..|++...+++|+. +.|+||++.......+.. ..+.+.|++|+|..-+||+|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 335899999999998888888 999999998766553332 23568999999999999999999999998
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=1.9e-16 Score=159.80 Aligned_cols=241 Identities=19% Similarity=0.336 Sum_probs=179.2
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCeEEEEEcCCC--eEE--EEe-----ccCCcceEEEEEcC-CCCEEEEEe
Q 004327 476 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESF--TVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 540 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~-----~Lasgs~Dg~I~VWdl~t~--~~~--~~l-----~~h~~~V~~v~fsp-dg~~Lasgs 540 (761)
..|.-+++.+-|.|+.+ +||+.+ -.+++|.+... +.. ..+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 57999999999999763 566654 48999988642 111 111 34667899999987 678999999
Q ss_pred CCCeEEEEecCCC--CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Eec---CCCeeEEEE
Q 004327 541 ADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC---QSGATQMRF 614 (761)
Q Consensus 541 ~DG~I~VWDl~t~--~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~-~~~---~~~i~~l~f 614 (761)
-|-++.|||++++ ......+..|..+|..|+|...+..+|++++.||.|++||++..+-... ++. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999985 2245678899999999999998899999999999999999997543322 222 335677888
Q ss_pred ecCCC-EEEEEEcC-CeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCC---ceeEE
Q 004327 615 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---GECIH 686 (761)
Q Consensus 615 spd~~-~Llags~d-g~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~---~~~i~ 686 (761)
++..- ++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|.. ..|++++ |..+.+||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 87554 44544444 68999999975 6788999999999999999965 6788887 77999999976422 11222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 687 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.+. .+..|..+.|++...-.+..+.++.+.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 222 56789999999765444444444455443
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4e-17 Score=175.87 Aligned_cols=208 Identities=18% Similarity=0.309 Sum_probs=160.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-ccCCcceEEEEEcC--CCCEEEEEeCCCeEEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 547 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~V 547 (761)
....+.||++.|+|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|.| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999999999999999999999888888776 68999999999999 4678999999999999
Q ss_pred EecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe----------cCC
Q 004327 548 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK----------CQS 607 (761)
Q Consensus 548 WDl~t---------~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~~----------~~~ 607 (761)
||+.. .......+..|...|..|+..|++.+.|.++++||+|+-+|++....- .... .--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 233456778899999999999999999999999999999999863211 1110 012
Q ss_pred CeeEEEEecCCC-EEEEEEcCCeEEEEECCC--------Ce----------EEEEEc-CCC-----------CCEEEEEE
Q 004327 608 GATQMRFQPRLG-RILAAAIENYISILDVET--------QV----------CRLKLQ-GHK-----------NQVHSVCW 656 (761)
Q Consensus 608 ~i~~l~fspd~~-~Llags~dg~I~IwDl~t--------~~----------~i~~l~-~h~-----------~~I~sl~~ 656 (761)
...++.++|... +|++|+.|-..++||.+. ++ ++..+. +|. ..++.++|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 357888999655 567777888999999431 11 222221 222 12566789
Q ss_pred cCCCCEEEEEe-CCeEEEEECCC
Q 004327 657 NTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 657 spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
+|+|.-|++.- ...|++||+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99997666655 66899998753
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=161.78 Aligned_cols=231 Identities=19% Similarity=0.288 Sum_probs=180.8
Q ss_pred CCeEEEEEc-------CCCCEEEEEECCCeEEEEEcCCCeEEEEecc--CCc---ceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 480 SKVESCHFS-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 480 ~~V~~lafS-------pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~--h~~---~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
..|...+|- |+..++|+.+.|.-|.+||.-+|+....+.. |-+ ...+++|+|||.+|++| ....|+|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 457888886 5778999999999999999999998877653 333 34689999999999887 5678999
Q ss_pred EecCCCCc--eeEEee-----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC
Q 004327 548 WDTENPDY--SLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG 619 (761)
Q Consensus 548 WDl~t~~~--~i~~~~-----~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~ 619 (761)
||+..+.. .+.... +..+-|.|++|+|.....++.++....+-||.-....++..+- +.++|+.++|.++|+
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 99954332 122222 2367899999999988899999988889898888777776654 567899999999999
Q ss_pred EEEEEEc-CCeEEEEECCCC-eEEEEEcCCCC-CEEE--EEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 620 RILAAAI-ENYISILDVETQ-VCRLKLQGHKN-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 620 ~Llags~-dg~I~IwDl~t~-~~i~~l~~h~~-~I~s--l~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
+|++|+. +..|.+||++.. .++..+..|.+ .-.. ....|++++|++|+ ||.|++||+.+.. ..+..+..+..
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd 341 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSD 341 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccccc
Confidence 9999987 789999999964 56677776655 2223 44568999999998 9999999998732 35666667788
Q ss_pred ceEEEEEeCCCCEEEEEEcC
Q 004327 694 KFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~d 713 (761)
.+..++++|--..+++++..
T Consensus 342 ~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccceecCcccceeeeccCc
Confidence 89999999998766655543
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=4.3e-16 Score=176.94 Aligned_cols=258 Identities=18% Similarity=0.238 Sum_probs=188.3
Q ss_pred CeEEEEEcCCC-eEEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCcee-----EEeecCCCCeEEEEEc
Q 004327 501 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFH 573 (761)
Q Consensus 501 g~I~VWdl~t~-~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i-----~~~~~h~~~V~sl~fs 573 (761)
+.+.||+++.. .+...+ .-...|+|++|+| +..+|+.|+.+|.|.+||+....... .....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333444 4557899999999 56788899999999999998765421 2334688999999997
Q ss_pred CCCCc-EEEEEeCCCcEEEEECCCCeee------eE-------EecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 004327 574 PSKED-LLCSCDNNSEIRYWSINNGSCA------GV-------FKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 638 (761)
Q Consensus 574 p~g~~-llasgs~Dg~I~vWDl~t~~~~------~~-------~~~~~~i~~l~fspd-~~~Llags~dg~I~IwDl~t~ 638 (761)
.+... -|++++.||.|..|+++.-... .. ......++++.|.+. -..|++|+.+|.|+.-+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65332 3558888999999998753321 11 112245788999884 456888889999887433322
Q ss_pred --------eEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-
Q 004327 639 --------VCRLKLQGHKNQVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL- 708 (761)
Q Consensus 639 --------~~i~~l~~h~~~I~sl~~spdg~~-LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~- 708 (761)
+....+..|.++|+++.++|-+.. +.+++|.+|+||..... ...+..+..+...+++++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEE
Confidence 123345568899999999997754 44455999999998622 145666666777799999999986655
Q ss_pred EEEcCCcEEEEECCCCcEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 709 VIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~~~~---~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++..+|.|.|||+...... ....+....+.+.|++.|++|++|+..|.|+||+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5555999999999654322 4444566778888999999999999999999985
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.7e-16 Score=157.55 Aligned_cols=248 Identities=21% Similarity=0.360 Sum_probs=184.2
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAV 504 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~ 504 (761)
+-+.+.+++++.|..+++|...+ ....+.+-...+.|.+.|..|.|.+ -|..+|+++.|++|.
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~---------------~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTS---------------DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCceeeeccCCCcEEEEeccC---------------CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 44557789999999999884322 2234566777889999999999976 688999999999999
Q ss_pred EEEcC---------CCeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEecCCCCce------------eEEee
Q 004327 505 LWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRTFT 561 (761)
Q Consensus 505 VWdl~---------t~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~VWDl~t~~~~------------i~~~~ 561 (761)
||.-. ......++......|++|.|.|. |-.||+++.||+|+||+.-+.... +....
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99641 22345667778889999999994 678999999999999987653311 01122
Q ss_pred cCCCCeEEEEEcCCC--CcEEEEEeCC-----CcEEEEECCCC--eeeeEE---ecCCCeeEEEEecCCC----EEEEEE
Q 004327 562 GHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGVF---KCQSGATQMRFQPRLG----RILAAA 625 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g--~~llasgs~D-----g~I~vWDl~t~--~~~~~~---~~~~~i~~l~fspd~~----~Llags 625 (761)
.+..+..|+.|+|.. ..+|+.|+.+ +.++||....+ +....- .+..+|+.++|.|.-+ .|++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 466778899998752 4467777654 47888876543 333222 3557799999999754 477888
Q ss_pred cCCeEEEEECCCC--------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004327 626 IENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 626 ~dg~I~IwDl~t~--------------------~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~ 684 (761)
.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+|++|...-.....|
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC 325 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKC 325 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhee
Confidence 899 999998731 23455778999999999999999999988 99999998765555566
Q ss_pred EEEeec
Q 004327 685 IHELSC 690 (761)
Q Consensus 685 i~~l~~ 690 (761)
...+..
T Consensus 326 ~sv~~~ 331 (361)
T KOG2445|consen 326 TSVLKA 331 (361)
T ss_pred eeEEec
Confidence 665553
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.1e-16 Score=167.14 Aligned_cols=204 Identities=20% Similarity=0.343 Sum_probs=164.6
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------eEEEEeccCCcceEEEEEcCC-CCEEEEEeC
Q 004327 471 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSA 541 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~ 541 (761)
.+..+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3445779999999999999 5668999999999999987543 456788999999999999995 568999999
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCC
Q 004327 542 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLG 619 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~ 619 (761)
|.+|.+|++.++.. +.++. |.+-|+++.|+.+| .++++.+.|..|+|||.++++.+..-..+.+ ...+.|-.++.
T Consensus 153 Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCce-eeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 99999999999875 44455 99999999999997 5667888999999999999999887754443 45677888877
Q ss_pred EEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC
Q 004327 620 RILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 679 (761)
Q Consensus 620 ~Llags~----dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~ 679 (761)
+++.+. +..+.+||..+-. ....+. ....|.---|++|..+|+.++ |+.|+.|.+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 554443 6689999877542 233443 445677777899999888877 999999999865
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=4.5e-16 Score=180.94 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=209.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCCC-------eEEEEeccCCcceEEEEEcCCCCEEEEEe
Q 004327 469 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSS 540 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~v~fspdg~~Lasgs 540 (761)
...+..+..|...|..++.+++. .+|++|+.||+|++||+... +...++......+.++.+.+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 35678899999999999998855 89999999999999997532 23344444567899999999999999999
Q ss_pred CCCeEEEEecCCCCce------eEEeecC-CCCeE-EEEEcCCCCc-EEEEEeCCCcEEEEECCCCeeeeEEe---cCCC
Q 004327 541 ADRTVRVWDTENPDYS------LRTFTGH-STTVM-SLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFK---CQSG 608 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~------i~~~~~h-~~~V~-sl~fsp~g~~-llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~ 608 (761)
.||.|++.+++..... .+....+ .+.+. .-+|...... +++.+..-+.|..||++.......++ .++.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999998862211 1111112 23333 3344443333 67777778899999999876665554 3467
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCC---CCEEEEEe---CCeEEEEECCCCCC
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSK 681 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~~spd---g~~Lasgs---Dg~I~IWdl~s~~~ 681 (761)
|++++.+|.+.+++.|+..|.+.+||++-+.++..+.. +..+|..++.+|- ..+.++++ .+.|.+|++.++..
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999999888877652 4467777777663 34555544 56899999998733
Q ss_pred ceeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE------------------
Q 004327 682 GECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------ 727 (761)
Q Consensus 682 ~~~i~~l----------~------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~------------------ 727 (761)
...+..- . .+.-....+++...+.++++|+.|..|+.||....+..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 2222211 0 01112334555556678999999999999997432210
Q ss_pred ---------------------------------------EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEcC
Q 004327 728 ---------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 761 (761)
Q Consensus 728 ---------------------------------------~l~~h~~~V~slafspdg-~~LaSgs~DG~I~IWd 761 (761)
.-..|...|+++++.... .+|++++.||.|+||+
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011366778888876544 5899999999999996
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=1.4e-16 Score=163.17 Aligned_cols=242 Identities=19% Similarity=0.287 Sum_probs=182.7
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecC
Q 004327 477 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTE 551 (761)
Q Consensus 477 ~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~ 551 (761)
.|....+.|+|+-| ..+||.|+.-|.|+|.|+.++++...+.+|...|+.+.|.|+. .+|++++.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888764 3479999999999999999999999999999999999999964 689999999999999999
Q ss_pred CCCceeEE---eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------------------------
Q 004327 552 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 604 (761)
Q Consensus 552 t~~~~i~~---~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~------------------------ 604 (761)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....++
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8664 554 457999999999999986 66699999999999998432111100
Q ss_pred -----cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC-CCCe-------------EEEEEcCCCCCEEEE--EEcCCCCEE
Q 004327 605 -----CQSGATQMRFQPRLGRILAAAIENYISILDV-ETQV-------------CRLKLQGHKNQVHSV--CWNTSGEYL 663 (761)
Q Consensus 605 -----~~~~i~~l~fspd~~~Llags~dg~I~IwDl-~t~~-------------~i~~l~~h~~~I~sl--~~spdg~~L 663 (761)
+...|.|+.|- ++++++-+.++.|..|.. +-.+ .+..+.-....|.-+ +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112233332 467888888999999987 2111 222333334455555 456668899
Q ss_pred EEEe-CCeEEEEECCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 664 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 664 asgs-Dg~I~IWdl~s~~~~~~i-~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
+.|. .|.|++||++......+. ..-......|...+|+.|+..|+..++|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 899999999886543222 2223345678999999999999999999999999864
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=173.11 Aligned_cols=282 Identities=17% Similarity=0.280 Sum_probs=212.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC----CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 476 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
..|...++|.+++|+++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999995322 12345677899999999999999999999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------------CCCeeEEEEecCCC
Q 004327 552 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 619 (761)
Q Consensus 552 t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~------------~~~i~~l~fspd~~ 619 (761)
+++ ...+..-.++|..+.++|+++.+. .+..|..|.+....+......+.+ .+-.+.++++|..+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 977 566777789999999999976655 444589999988765544433332 12256789999888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--eEEEEECC
Q 004327 620 RILAAAIENYISILDVETQVCRLKLQG-----HK------NQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 677 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~i~~l~~-----h~------~~I~sl~~spdg~~Lasgs---------Dg--~I~IWdl~ 677 (761)
.++..+..|.|.+||+.+.+.+..+.. +. -.|+.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766655431 22 2467788888899998864 33 68889876
Q ss_pred CCCCceeEE--EeecCCCceEEEEEeC-CCC-EEEEEEcCCcEEEEECCCCc----------EE-EEccCCCCeeEEEEe
Q 004327 678 SGSKGECIH--ELSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 742 (761)
Q Consensus 678 s~~~~~~i~--~l~~~~~~I~sl~fsp-dg~-~L~sgs~dg~I~IwDl~~~~----------~~-~l~~h~~~V~slafs 742 (761)
.......+. ....|+..+...++.+ ... ..++++.||.++||-+.+.+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 654333322 2345666665555544 333 68899999999999883322 22 112478999999999
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 004327 743 TVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 743 pdg~~LaSgs~DG~I~IWd 761 (761)
.||. +++++.|++|.|||
T Consensus 519 ~dGs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGS-LLAVSFDDTITIWD 536 (792)
T ss_pred CCCc-EEEEecCCEEEEec
Confidence 9995 55567889999997
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=149.23 Aligned_cols=268 Identities=15% Similarity=0.176 Sum_probs=194.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCC----------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t----------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
.|.+-+|+|.+++|++|+.+|.|.++.+.+ ...+....+|.++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 367779999999999999999999998753 13445568999999999998 34666665 699999987
Q ss_pred CCCCcee-------EEeecCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecC
Q 004327 551 ENPDYSL-------RTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 617 (761)
Q Consensus 551 ~t~~~~i-------~~~~~h~-----~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd 617 (761)
+...... ....-|. -.|+++-..|..+.+|..| .|+.++.||+++|+..+.++.+.. +.++.-...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432211 0111122 3588999999888888666 599999999999999999996654 677777667
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEE
Q 004327 618 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t~~~i~~l~~h~----------~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~ 687 (761)
...+++|+.||++++||.++.+++..+...+ .+|-+++ -+..++++|+...+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 7889999999999999999999988775422 2455555 4667888888889999999986 33333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEc
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 760 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspd-g~~LaSgs~DG~I~IW 760 (761)
+. -...+..+.|..| .+++++..+.|.-|.+..--...........++..|+.. -++|-.++....+.|+
T Consensus 243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 2456778888655 477888788899998755433333333344555555433 3466666777777775
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5e-16 Score=175.63 Aligned_cols=233 Identities=16% Similarity=0.105 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 576 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g 576 (761)
+..|.|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. ..+....+....++|+|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCC
Confidence 4689999987655 45667788889999999999999988754 3699999987653 1222222334578999999
Q ss_pred CcEEEEEeCCCcEE--EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECC--CCeEEEEEcCCCCCE
Q 004327 577 EDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE--TQVCRLKLQGHKNQV 651 (761)
Q Consensus 577 ~~llasgs~Dg~I~--vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~--t~~~i~~l~~h~~~I 651 (761)
..++++.+.+|.+. +||+.++...........+....|+|++..|++++. ++...||++. .+.. ..+ .+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~-- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG-- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--
Confidence 88887777777654 557776665554444455788999999998877664 6777777654 3322 222 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC---CCCcEEE
Q 004327 652 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 728 (761)
Q Consensus 652 ~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl---~~~~~~~ 728 (761)
.++.|+|||++|+..+...+.+||+.++.. .. +... .....+.|+|++++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888744566799987632 11 1111 12356789999999999999997777664 3333446
Q ss_pred EccCCCCeeEEEEeCC
Q 004327 729 LSAHDKLVSSLAASTV 744 (761)
Q Consensus 729 l~~h~~~V~slafspd 744 (761)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.3e-17 Score=174.48 Aligned_cols=250 Identities=20% Similarity=0.227 Sum_probs=187.2
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 426 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 426 l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
+...+..+.+++.++.+.+|.-.. ........+..+-+|++|.++|.|+++.+++..+++|+.||+|+.
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk-----------~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQK-----------AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcc-----------cCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 355667788889999888884311 122345667889999999999999999999999999999999999
Q ss_pred EEcCC----------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec--CCCCeEEEEEc
Q 004327 506 WCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFH 573 (761)
Q Consensus 506 Wdl~t----------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~--h~~~V~sl~fs 573 (761)
|++.. ......+.+|++.|+.+++++....|++|+.||+|++|+...... .+|.. ..+.-.+++|.
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeec
Confidence 96531 123456789999999999999999999999999999999876543 22222 22334556665
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 574 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 574 p~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~--------~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
.....+.++...-+.--++++.....+..+.. ...+..+.++|.....+++..|+.|+++|..+++.++...
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee
Confidence 44322332333333333444444444444332 1336778899999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
.|...++++++.|+|-+|.+++ |+.+++|.+... .|+.....|
T Consensus 529 a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred eccceecceeecCCCceEEeecCCceeehhhccch---heeeccccc
Confidence 9999999999999999999999 999999998654 455544433
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=150.76 Aligned_cols=229 Identities=19% Similarity=0.221 Sum_probs=169.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t---------~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD 593 (761)
.|..-+|+|.+++|++|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+ +.++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 466778999999999999999999998763 233455678999999999999 34565777 69999998
Q ss_pred CCCCee----eeEEe----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 004327 594 INNGSC----AGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 594 l~t~~~----~~~~~----------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd 659 (761)
.+.... ...+. .-..|+.+...|..+.++.++.|+.++.||+++++...++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11110 1134788999999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEECCCCCCceeEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc
Q 004327 660 GEYLASVS-DELVRVWSIGSGSKGECIHELSC-------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 731 (761)
Q Consensus 660 g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~ 731 (761)
..-|++|+ ||+++|||+++.+....+..+.. .+..|-+++. +..++++|+ ...+.+|+++..++.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 44566666 99999999999854433333221 1223444444 445566554 4479999999999987777
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 732 HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 732 h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
....|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 7888999988744 56667655555444
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=3.7e-16 Score=168.07 Aligned_cols=262 Identities=16% Similarity=0.242 Sum_probs=189.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 548 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~f-sp-------dg~~Lasgs~DG~I~VW 548 (761)
.|...|.||.|+.....+.+++ |..+.+|...+......+.-....|....+ -+ ..+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666678999998776665554 566666643332222222222222221111 11 23578899999999988
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg 628 (761)
+-.. + ..+....|.+.|.+-.|+|+|.-++ ++++||.|++|.-...-..........|.|++|.|+.+.++.+ ..+
T Consensus 91 ~k~~-r-VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 91 NKSA-R-VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred cccc-h-hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 7543 2 3567788999999999999987666 8888999999986532222222345789999999998777655 446
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
.++|=-+.-...+..++.|.+-|.++.|++..++|++|+ |-..+|||-.. ..+..-..|+.+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 777777777777788899999999999999999999999 88999999754 566677788999999999999 433
Q ss_pred EEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 708 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
++ ++.+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 242 ~v-~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LL-WSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 43 334455521 134578999999999999999999998754
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.9e-16 Score=160.06 Aligned_cols=275 Identities=16% Similarity=0.194 Sum_probs=194.2
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 507 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd 507 (761)
+..++++...+.|++| +..++.. +..+++|...+..+.|.. ....+.+++.||+|++||
T Consensus 40 e~~vav~lSngsv~ly----------------d~~tg~~---l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLY----------------DKGTGQL---LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEE----------------eccchhh---hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 3556666666666555 4445443 444667777777888876 456899999999999999
Q ss_pred cCCCeEEEE--eccCC-cceEEEEEcCCCCEEEEEeC----CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcE
Q 004327 508 TESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 508 l~t~~~~~~--l~~h~-~~V~~v~fspdg~~Lasgs~----DG~I~VWDl~t~~~~i~-~~~~h~~~V~sl~fsp~g~~l 579 (761)
+.+...... +..+. .+..|++..-.+..+++|.. |-.|.+||++.....+. ....|...|+++.|+|....+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 987655433 34555 46677777767778888754 66899999998776444 445799999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC----eeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004327 580 LCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------ 648 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~----~~~~~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~h~------ 648 (761)
|++|+.||-|.+||++.. .++.++.....|.++.|..++ ++|.+.+......+|+++.+.+...+....
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL 260 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH
Confidence 999999999999999753 345666777789999998875 468999999999999999887655443211
Q ss_pred ------CCEEEEEEcCCCCEEEEE-e-CCeEEEEECC---CCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 649 ------NQVHSVCWNTSGEYLASV-S-DELVRVWSIG---SGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 649 ------~~I~sl~~spdg~~Lasg-s-Dg~I~IWdl~---s~~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
..+.......+...++.+ + -++..++-+. ++.....+..+.+ |...|.++.|...+..+++|+.||.|
T Consensus 261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceE
Confidence 111111111233333333 3 3444444433 3333344445554 56678889999999999999999999
Q ss_pred EEEECCC
Q 004327 717 ELWNMTE 723 (761)
Q Consensus 717 ~IwDl~~ 723 (761)
.+|....
T Consensus 341 ~~Wk~~d 347 (376)
T KOG1188|consen 341 QAWKVED 347 (376)
T ss_pred EEEecCC
Confidence 9998633
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1e-15 Score=173.90 Aligned_cols=246 Identities=17% Similarity=0.231 Sum_probs=187.6
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeE--EE----EeccCCcceEEEEEcCCC--CEEEEEeCCCeEEEE
Q 004327 478 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 548 (761)
Q Consensus 478 H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~--~~----~l~~h~~~V~~v~fspdg--~~Lasgs~DG~I~VW 548 (761)
-...|+|++|+| +..+||.|..+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 345699999999 677889999999999999987654 22 224789999999997754 449999999999999
Q ss_pred ecCCCCceeEE-----ee------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCe-----ee-eEEecCCC
Q 004327 549 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGS-----CA-GVFKCQSG 608 (761)
Q Consensus 549 Dl~t~~~~i~~-----~~------~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t~~-----~~-~~~~~~~~ 608 (761)
+++.-..+... .. .-...+++++|.+.....|+.|+++|.|..-+-. ... .. ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88754332211 11 1234589999999988899999999998874332 222 11 12235577
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCceeE
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~~i 685 (761)
+.++.++|-...++..+.|.+|+||... ...++..+..+...|++++|||..- .|+++. ||.|.+||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988887777779999999988 6778888888888899999999875 455555 99999999976543 333
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
............+.|++.|+.|++|...|.+++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 344334566777888899999999999999999999643
No 190
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.6e-15 Score=152.10 Aligned_cols=276 Identities=15% Similarity=0.234 Sum_probs=190.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-CCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCc--
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 555 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~-- 555 (761)
-.+..++|++.-..+|++..|-.|++||-.. +....++. ....|+|++|-|. .+.|++|+..| |.+|..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999766789999999999999776 44444432 3457999999995 45677777665 99998763221
Q ss_pred -----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEE
Q 004327 556 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 556 -----------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~~~Lla 623 (761)
.+....+| .+|+++.|.+||..++-+.-.|..|.|||..++..+... ...++++-+.|+||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233445 689999999998666655557889999999999887766 45677889999999999999
Q ss_pred EEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCce------------eEEEee-
Q 004327 624 AAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS- 689 (761)
Q Consensus 624 gs~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~------------~i~~l~- 689 (761)
++.|+..++|... +.....-.. ..+.|...+|+|+|.+|.....+.-++|.+....... .+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999544 443333333 3458999999999999888776666666654321111 111111
Q ss_pred ----c----CCCceEEEEEeCCCCEEEEEEcCC--------cEEEEECCCCcEEEEc--c--CCCCeeEEEEeC---CCC
Q 004327 690 ----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 746 (761)
Q Consensus 690 ----~----~~~~I~sl~fspdg~~L~sgs~dg--------~I~IwDl~~~~~~~l~--~--h~~~V~slafsp---dg~ 746 (761)
. -.+++.+++|+|.|.++++.-..+ .|.+||......+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1 146789999999999999887654 3667887666555332 1 111244555555 344
Q ss_pred EEEEEECCCeEEE
Q 004327 747 MVASASHDKCVKI 759 (761)
Q Consensus 747 ~LaSgs~DG~I~I 759 (761)
+|..|=..|.|.-
T Consensus 415 lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 415 LLSIAWSTGRIQR 427 (445)
T ss_pred EEEEEeccCceEe
Confidence 5555545555543
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3.4e-14 Score=147.98 Aligned_cols=233 Identities=16% Similarity=0.241 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCce
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 556 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG--~I~VWDl~t~~~~ 556 (761)
...|..+.|+.|...|..|+.|| .++|+.+..............|.-+-|+ ..++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce-
Confidence 34577888999999999999887 4788777655433332333345555565 44666666543 588999886443
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC----CCeeEEEEecCCCEEEEEEc--CCeE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAAI--ENYI 630 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~----~~i~~l~fspd~~~Llags~--dg~I 630 (761)
+..+. ...+|.++.++.+ +++ ++-. ..|+|||+++.+.+.++... .++..+.+++.+.+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33333 4567999999854 444 4443 34999999999999887643 22444555555557776443 6899
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 004327 631 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 706 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~s~~~~~~i~~l~~~--~~~I~sl~fspdg~~ 706 (761)
.+||+.+-+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+|+.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 45 7999999888 556665533 345889999999999
Q ss_pred EEEEEcCCcEEEEECCC
Q 004327 707 LLVIGCYETLELWNMTE 723 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~ 723 (761)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 192
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.3e-14 Score=164.00 Aligned_cols=235 Identities=13% Similarity=0.105 Sum_probs=171.8
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++|++.++.. ..+....+.+..+.|+|+|.
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 37889998765443 34456678999999999999887653 35799999987652 33333344456789999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004327 578 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 578 ~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d-g--~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 5999999988776665555567889999999999887764 3 5666688776543 3333444566
Q ss_pred EEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCc
Q 004327 653 SVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 725 (761)
Q Consensus 653 sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~ 725 (761)
+.+|+|||++|+..+ ++ .|++||+.++.. ..+.. ........|+|||.+|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999988766 32 688999987632 22221 12234678999999999999877 47888987777
Q ss_pred EEEEccCCCCeeEEEEeCC
Q 004327 726 TLTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 726 ~~~l~~h~~~V~slafspd 744 (761)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7777788899999999873
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.8e-15 Score=171.22 Aligned_cols=233 Identities=17% Similarity=0.170 Sum_probs=164.5
Q ss_pred ccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeE--EEEeccCCcceEEEEEc
Q 004327 456 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFS 530 (761)
Q Consensus 456 ~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~--~~~l~~h~~~V~~v~fs 530 (761)
....+|+..... ...+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++. +..+.+| ..+++|+
T Consensus 184 ~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS 256 (429)
T ss_pred EEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence 444555543322 34566788899999999999999988754 3699999988754 3334433 4478999
Q ss_pred CCCCEEEEEe-CCCeEEEE--ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEecC
Q 004327 531 PSLSRLATSS-ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQ 606 (761)
Q Consensus 531 pdg~~Lasgs-~DG~I~VW--Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~~~ 606 (761)
|||+.|++++ .+|.+.|| |+.++. ...+..+...+.++.|+|++..+++++..++...||+++.. .....+..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~- 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG- 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-
Confidence 9999888765 67876665 555443 45666677788899999999888877777888888876532 22223322
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004327 607 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 607 ~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i 685 (761)
.. ....|+|++++|++++.++ +.+||+.+++.......+ ...++.|+|||++|++++ ++.+.+|++.+. ....+
T Consensus 334 ~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~ 408 (429)
T PRK01742 334 RG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFK 408 (429)
T ss_pred CC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCce
Confidence 22 4678999999998887754 666999988654332222 345788999999999988 887777776421 11566
Q ss_pred EEeecCCCceEEEEEeCC
Q 004327 686 HELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspd 703 (761)
..+..+.+.+..++|+|-
T Consensus 409 ~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEccCCCCCCCCcccCCC
Confidence 677777788888999885
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=1.1e-14 Score=149.03 Aligned_cols=271 Identities=15% Similarity=0.201 Sum_probs=201.4
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCcee
Q 004327 480 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasg-s~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
+.|.-+.|..|.-+++++ ..|+.|.+|++...+-...+......+..++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 567778888887765554 5678999999988888888888889999999999995 56677789999999999865432
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCeeeeE
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 602 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~-----------------------------------Dg~I~vWDl~t~~~~~~ 602 (761)
+.-.+..+..++|+|+|....+..-. +..+.+||---.-.+..
T Consensus 129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 22233456888999987654432211 23455666443334445
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 004327 603 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------- 642 (761)
Q Consensus 603 ~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~---------------------------------------- 642 (761)
+...-++..+.|+|.+.++++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 5666788999999999999999999988876522211110
Q ss_pred --------------------EEc------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCceeEEEeecCCC
Q 004327 643 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 643 --------------------~l~------~h~~~I~sl~~spdg~~LasgsDg---~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
.++ ...-.+.-++|++|..|+++-.|. .+-+||+... .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 011 011235668999999999998855 7999999764 3333444577
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
+|....|+|....|+++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777766666688999999999999999998863
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=3.4e-15 Score=150.80 Aligned_cols=246 Identities=19% Similarity=0.234 Sum_probs=181.6
Q ss_pred EEEEeccCCcceEEEEEcC---CCCEEEEEeC----CCeEEEEecCCCCcee--EEeecCCCCeEEEEEcCCC----CcE
Q 004327 513 VKSTLEEHTQWITDVRFSP---SLSRLATSSA----DRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK----EDL 579 (761)
Q Consensus 513 ~~~~l~~h~~~V~~v~fsp---dg~~Lasgs~----DG~I~VWDl~t~~~~i--~~~~~h~~~V~sl~fsp~g----~~l 579 (761)
.+..+..+ -.+.++.|+. ...+|+.|+. ...|.|..++.....+ ..-..|..+++.+-|.|+. ..+
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 34444333 4577888874 2447888875 3567776555333222 2234689999999999985 357
Q ss_pred EEEEeCCCcEEEEECCCCe--ee--e------EEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCe---EEEEEc
Q 004327 580 LCSCDNNSEIRYWSINNGS--CA--G------VFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQV---CRLKLQ 645 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~~--~~--~------~~~~~~~i~~l~fsp-d~~~Llags~dg~I~IwDl~t~~---~i~~l~ 645 (761)
|++++ -.+++|.+...+ .. . .-....+++++.|+. +-++|.+.+-|-+..|||++++. ....+.
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 76764 479999987422 11 1 112345688888876 44567777779999999999863 456677
Q ss_pred CCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC-cEEEEEC
Q 004327 646 GHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE-TLELWNM 721 (761)
Q Consensus 646 ~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg-~I~IwDl 721 (761)
.|..+|..|+|..++ ..+++++ ||.|++||++.......+++-.....+...++|++.. +++++...|. .|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 899999999999866 4666666 9999999999887767777766667788999999866 5666666665 7999999
Q ss_pred CCCcEE--EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEcC
Q 004327 722 TENKTL--TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 761 (761)
Q Consensus 722 ~~~~~~--~l~~h~~~V~slafspdg-~~LaSgs~DG~I~IWd 761 (761)
+..... ++.+|.+.|+.++|.|.. ..|+||++|..+.|||
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 765433 888999999999999975 5899999999999997
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=165.35 Aligned_cols=248 Identities=16% Similarity=0.211 Sum_probs=186.7
Q ss_pred eecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe
Q 004327 461 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 540 (761)
Q Consensus 461 ~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 540 (761)
+|..+|. .+..+++|.+.|+|++|+.||+.+|+|+.|+.|.||+..-...+ . ..|.+.|.|+.|+|-...|++++
T Consensus 38 yD~ndG~---llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 38 YDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCS 112 (1081)
T ss_pred EeCCCcc---cccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcc
Confidence 3444443 46779999999999999999999999999999999975432222 2 26999999999999988999987
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecC
Q 004327 541 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPR 617 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd 617 (761)
-. ..-+|..+.... ...+ ....|.+++|..|| .+++.|-.+|+|.+-+-...+.+..-. .+++|.+++|+|.
T Consensus 113 Ls-dFglWS~~qK~V--~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 113 LS-DFGLWSPEQKSV--SKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred hh-hccccChhhhhH--Hhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence 64 467888775332 2222 34568899999996 566688889999998766444444433 3567999999996
Q ss_pred CC-----EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004327 618 LG-----RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 618 ~~-----~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
.+ .+.+.....++.+|.+.. +.+..-+.-.....|+.+.++|+|+..|+ |+.+++|.-.. ..+.++...
T Consensus 188 sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~ 262 (1081)
T KOG1538|consen 188 SGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQ 262 (1081)
T ss_pred CCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeecccc
Confidence 43 466666777777777753 22322222334557899999999999888 99999997532 455666667
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 692 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 692 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+.+|+++...|++.+++.|+.||+|..|++..
T Consensus 263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 88999999999999999999999999998854
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.8e-14 Score=150.00 Aligned_cols=230 Identities=13% Similarity=0.186 Sum_probs=179.6
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCe
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 598 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D--g~I~vWDl~t~~ 598 (761)
...+..+.|+.+...|..|+.|| .++|..+....... .......|..+-|+. .+++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999998 67888775443111 111223455566663 355444433 459999999999
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 004327 599 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 672 (761)
Q Consensus 599 ~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~~spdg~~Lasgs---Dg~I~ 672 (761)
.+..+.....|.++.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.|++.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999864 555555544 99999999999888764 444566677777777988755 67999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEE-EEccC--CCCeeEEEEeCCCCEE
Q 004327 673 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 748 (761)
Q Consensus 673 IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h--~~~V~slafspdg~~L 748 (761)
+||+.+- ..+..+..|++.+-+++|+++|.+|+++++.| .|+||.+.++..+ .++.. ...|.+++|+|++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999776 77778889999999999999999999999999 6899999999877 44432 4568999999999999
Q ss_pred EEEECCCeEEEcC
Q 004327 749 ASASHDKCVKIWK 761 (761)
Q Consensus 749 aSgs~DG~I~IWd 761 (761)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=8.1e-15 Score=150.04 Aligned_cols=224 Identities=16% Similarity=0.207 Sum_probs=171.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC---CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t---~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
--..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3456899999999999999999999999998764 4577899999999999999999999999999999999998433
Q ss_pred C-c-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-----EecCCCeeEEEEecCCCEEEEEEc
Q 004327 554 D-Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 554 ~-~-~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~-----~~~~~~i~~l~fspd~~~Llags~ 626 (761)
. . +...+..++..++++.|+|.+ +.|++|+....|.||-++...--.. ......|+++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 2 2 234566788999999999995 6677888888899988765432211 123466899999999999999999
Q ss_pred CCeEEEEECCC------------------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004327 627 ENYISILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 627 dg~I~IwDl~t------------------~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~ 687 (761)
|+..+||...- +..+.++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 99999986421 122333434567899999999999999888 99999998876531 2222
Q ss_pred eecCCCceEEEEEeCC
Q 004327 688 LSCTGNKFHSCVFHPT 703 (761)
Q Consensus 688 l~~~~~~I~sl~fspd 703 (761)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 2223345555555443
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.7e-15 Score=158.73 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 477 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~-Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
+|...-+.|..+|||+| +|+|.+.-.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|.+..-..-.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56677889999999998 57778888999999988766554433445566666676766677777888887664432111
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwD 634 (761)
.++ -...-.+++++.-...+++.|+ ...|+-++++.|..+..+... ++++++..++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 1223455666655455664444 668999999999999888866 6789999999999999999999999999
Q ss_pred CCCCeEEEEEcC------CCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 635 VETQVCRLKLQG------HKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 635 l~t~~~i~~l~~------h~~-----~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
.++...+..+.. |.+ .|+++.|+.+|-.+++|. +|.|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 998765555432 333 499999999999999998 9999999999863 22333334466788899977
Q ss_pred CCC-EEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 703 TFP-SLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 703 dg~-~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
.+. ..++......++|||-.+++..........++.+|+-|++.+++++-.++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 632 234444455899999999999977777778999999999999999998877654
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1e-13 Score=153.01 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=185.1
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 548 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VW 548 (761)
+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.+.|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 3444555443333457899999999999999999999999999999987554 468899999999998776 58999999
Q ss_pred ecCCCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCC
Q 004327 549 DTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLG 619 (761)
Q Consensus 549 Dl~t~~~~i~~~~~-------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~--~~~~~~~~i~~l~fspd~~ 619 (761)
|.++.+. ++.+.. ....+..+..+|.+..++++--+.+.|.+.|....+.+ ..+..........|+|+++
T Consensus 106 D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 106 DAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp ETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred ccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9998664 444332 23467788888887767766666789999998765433 4555566788999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEE-------EcC--CCCEE-EEEeCCeEEEEECCCCCCcee
Q 004327 620 RILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WNT--SGEYL-ASVSDELVRVWSIGSGSKGEC 684 (761)
Q Consensus 620 ~Llags~-dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~-------~sp--dg~~L-asgsDg~I~IWdl~s~~~~~~ 684 (761)
+++++.. ++.|.++|.++++.+..+.. |..++..+- |.. .+.+. ...+.+.+.+||..+. +.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kv 261 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KV 261 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eE
Confidence 9887654 68999999999988776542 444444332 211 12222 2222445556776555 67
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEE---Ec-CCcEEEEECCCCcEEEEcc--CCCCeeEEEEeCCCCEEEEEECC--Ce
Q 004327 685 IHELSCTGNKFHSCVFHPTFPSLLVI---GC-YETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHD--KC 756 (761)
Q Consensus 685 i~~l~~~~~~I~sl~fspdg~~L~sg---s~-dg~I~IwDl~~~~~~~l~~--h~~~V~slafspdg~~LaSgs~D--G~ 756 (761)
+..+...+.. ..+..||+++++++. +. .+.|.++|..+.+.+.... -...+..+.|+++|+++..+..| |.
T Consensus 262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence 7777776666 778889999999998 33 4699999999997763322 22359999999999966655543 46
Q ss_pred EEEcC
Q 004327 757 VKIWK 761 (761)
Q Consensus 757 I~IWd 761 (761)
|.|||
T Consensus 341 i~v~D 345 (369)
T PF02239_consen 341 IVVYD 345 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98886
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.1e-14 Score=159.67 Aligned_cols=234 Identities=13% Similarity=0.158 Sum_probs=170.5
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
..|.+||.+. .....+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788888855 444556678889999999999999888764 46899999987653 44555667788999999998
Q ss_pred cEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 004327 578 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 578 ~llasgs~Dg~--I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg--~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
.++++.+.++. |++||+.++................|+||+.+|+.++. +| .|++||+.++.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776655 88889988776555444445677999999999888775 33 68899988765443 333455667
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CcEEEEECC
Q 004327 653 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 722 (761)
Q Consensus 653 sl~~spdg~~Lasgs-D-g--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d------g~I~IwDl~ 722 (761)
...|+|||++|+... + + .|.+||+.++. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888876542 12222 22346778999999998877653 258888987
Q ss_pred CCcEEEEccCCCCeeEEEEeCC
Q 004327 723 ENKTLTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 723 ~~~~~~l~~h~~~V~slafspd 744 (761)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665444 3556778888863
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.9e-14 Score=161.59 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=168.9
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
..|.+||.+.. ....+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+++
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998654 444565677789999999999999988743 4699999987653 33444455566889999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 004327 578 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 578 ~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg--~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
.++++.+.++ .|++||+.+++..............+|+|++.+|++++. +| .|+++|+.++.... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887776665 599999998876554443344567899999999888775 34 47778887765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCc
Q 004327 653 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 725 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg---~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~ 725 (761)
.++|+|||++|+..+ ++ .|.+||+.++.. . .+. +......+.|+|||++|+..+.++ .|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 32 699999977632 1 222 222345679999999988877643 68889997766
Q ss_pred EEEEccCCCCeeEEEEeC
Q 004327 726 TLTLSAHDKLVSSLAAST 743 (761)
Q Consensus 726 ~~~l~~h~~~V~slafsp 743 (761)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 556666677888888886
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=3.9e-16 Score=165.95 Aligned_cols=262 Identities=16% Similarity=0.254 Sum_probs=210.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
-+.+.|+.+|++|+.|+..|.|..+|..++++...+.. ...|.++.|..+..+||++- ...++|||-.. ..+..++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G--tElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG--TELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCC--cEEeehh
Confidence 56789999999999999999999999999999988853 45699999999888888874 56899998764 3366666
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004327 562 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVC 640 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~ 640 (761)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55 46899999998 588999999999999999999999877643 5577888899988888899999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 641 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 641 i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
+..+..|.++|.+|++.++|.|+++.+ |..++|||++.. ..++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999989999999999999999999999 999999999876 34444433 4556677888777 5666666789999
Q ss_pred E-CCCCc---EEEEcc--CCCCeeEEEEeCCCCEEEEEECCC
Q 004327 720 N-MTENK---TLTLSA--HDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 720 D-l~~~~---~~~l~~--h~~~V~slafspdg~~LaSgs~DG 755 (761)
. .-.+. ...... ..+.|..+.|.|-..+|-.|...|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 112222 345899999999777666665544
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.5e-14 Score=160.87 Aligned_cols=274 Identities=20% Similarity=0.216 Sum_probs=195.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCC---CEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg---~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
..-.|++|+++++... +..|.||.+.++.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+.. +++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEE
Confidence 3457899999888776 5799999999999999999999999999998854 4788999999999999998664 555
Q ss_pred eecCCCCeEEEEEcCC---CCcEEEEEeCCC------------cEEEEECCCCee--eeEEecCCCeeEEEEecCCCEEE
Q 004327 560 FTGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~---g~~llasgs~Dg------------~I~vWDl~t~~~--~~~~~~~~~i~~l~fspd~~~Ll 622 (761)
+..+ .++..+.+.|. ....+.....|. .++-+.+.+... ...........++.+++.+ .+.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-EFK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-eEE
Confidence 5433 33444444221 011111111121 111111111000 0000011113556666664 455
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC-CCCceeEEEeecCCCceE
Q 004327 623 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 696 (761)
Q Consensus 623 ags~dg~I~IwDl~t~~~i~~----l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s-~~~~~~i~~l~~~~~~I~ 696 (761)
....+..+++|+..++..... -..|...+++.+++|++++++++. ||.|.+|.--. .........+.-|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 556667788888877541111 123667789999999999999999 99999996443 233355666777899999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 697 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 697 sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+++|+++|.+|++|+..+.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999966777888999999999999999999999998763
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.9e-15 Score=158.47 Aligned_cols=194 Identities=23% Similarity=0.257 Sum_probs=154.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee-
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 561 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~- 561 (761)
.+++|+.||..|++|+.||+++||+..+...+.....|...|.++.|+||+++|++.+.| ..+||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 679999999999999999999999998888888888899999999999999999999999 899999998743 33322
Q ss_pred -cCCCCeEEEEEcCCC---C-cEEEEEeCCCcEEEEECCCCee------eeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 562 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 562 -~h~~~V~sl~fsp~g---~-~llasgs~Dg~I~vWDl~t~~~------~~~~~~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
.-+..+..+.|..++ . ++++.....+.|+.||+..... ...+.....|++++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233446667777664 2 2333334556777777653221 1222334679999999999999999999999
Q ss_pred EEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 631 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
.||+..+-+++..++ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999887776554 5999999999999999999877 88888877643
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=3.9e-14 Score=154.83 Aligned_cols=239 Identities=15% Similarity=0.239 Sum_probs=171.6
Q ss_pred EcCCCCEEEE--EECCCeEEEEEcCC-CeEE----EEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCc---
Q 004327 487 FSPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--- 555 (761)
Q Consensus 487 fSpdg~~Las--gs~Dg~I~VWdl~t-~~~~----~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~--- 555 (761)
|+.+.+++|+ ++..|.|-||++.. |++. -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3334555554 45679999999864 3222 222 2345799999999 677999999999999999876543
Q ss_pred ---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 556 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 556 ---~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
+...+..|...|+++.|||-...+|++++.|.+|++||+.+++....+. +.+.|..++|+|+|..+++.|.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 3467889999999999999988999999999999999999988776665 456799999999999999999999999
Q ss_pred EEECCCCe-EEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CC----eEEEEECCCCCCceeEEEee-cCCCceEEEEEeCC
Q 004327 632 ILDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPT 703 (761)
Q Consensus 632 IwDl~t~~-~i~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg----~I~IWdl~s~~~~~~i~~l~-~~~~~I~sl~fspd 703 (761)
||+.++++ .+..-.+. ...--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.... .....+.--.+.+|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCC
Confidence 99998764 34433321 12334678888999988876 54 688898765421 1222211 11112223345666
Q ss_pred CCEE-EEEEcCCcEEEEECCCCcEE
Q 004327 704 FPSL-LVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 704 g~~L-~sgs~dg~I~IwDl~~~~~~ 727 (761)
...| ++|-.|..|++|.+-.....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 6554 45556779999998655443
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=9.1e-14 Score=150.35 Aligned_cols=244 Identities=15% Similarity=0.207 Sum_probs=164.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE----EEEeccCCcceEEEEEc-----CCCCEEEEEeCCCeEEEEecCC
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~----~~~l~~h~~~V~~v~fs-----pdg~~Lasgs~DG~I~VWDl~t 552 (761)
++...++-.|++|+-.- ...+++|+...+.. +....-.....+|-+|. +++--|+.|-..|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44555555666665443 34788888764322 11111112234455552 3455678888888899888765
Q ss_pred CCceeEEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004327 553 PDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 553 ~~~~i~~~~----~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg 628 (761)
... .+.+. -.+..|+|+.|-|.++.+|+.+-.+|.+++||.. +.+.....+....+++..+.+...-+
T Consensus 205 ~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 205 FEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred hHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEeeeec
Confidence 221 11111 1247899999999999999899999999999972 11111112222233444443332211
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
..+..++..+.-..+.|+.++|+|||++||+.+ ||.++|||+.+. +.+..++.--+...|++|+|||+||
T Consensus 277 ------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 277 ------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred ------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccEE
Confidence 111133444444456899999999999999999 999999999875 4444444456789999999999999
Q ss_pred EEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeC
Q 004327 708 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 743 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafsp 743 (761)
++|++|.-|.||.+...+++ .-.+|+++|+.++|.|
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999998 6679999999999983
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-13 Score=155.69 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=160.1
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+.+.+|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44444555677889999999999999887753 3599999987653 33343445677899999998
Q ss_pred cEEEEEeCCCcEEEE--ECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEEcCCCCCEE
Q 004327 578 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 578 ~llasgs~Dg~I~vW--Dl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~--I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
.++++.+.++...|| |+..+................|+||+.+|+.++. +|. |+++|+.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888887778775555 5554543333223334567889999999887665 344 445555555432222 2233445
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCc
Q 004327 653 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 725 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg---~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~ 725 (761)
...|+|||++|+..+ ++ .|++||+.++.. ..+.. ........|+||+++|++++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 688999999998776 33 699999987632 12221 22346779999999998888765 47777875544
Q ss_pred EEEEccCCCCeeEEEEeCC
Q 004327 726 TLTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 726 ~~~l~~h~~~V~slafspd 744 (761)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888999874
No 209
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=2.6e-14 Score=144.33 Aligned_cols=216 Identities=17% Similarity=0.336 Sum_probs=167.1
Q ss_pred CCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCe---------eeeEE
Q 004327 542 DRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGS---------CAGVF 603 (761)
Q Consensus 542 DG~I~VWDl~t~~~--~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-------g~I~vWDl~t~~---------~~~~~ 603 (761)
|..|.+.+++.... ..+.|.-|.+.|+.++-+|....+|+++..+ ..+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 67788877765443 2346677889999999999999999998753 257899986422 22233
Q ss_pred e--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEc-----CCCCCEEEEEEcC--CCCEEEEEeCCeEEE
Q 004327 604 K--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ-----GHKNQVHSVCWNT--SGEYLASVSDELVRV 673 (761)
Q Consensus 604 ~--~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~-i~~l~-----~h~~~I~sl~~sp--dg~~LasgsDg~I~I 673 (761)
. ..+.+.|+.|.|++..+++.. |..|.+|++..... +..+. .+....++-+|+| ++..+++.+|+++..
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 2 235789999999988887776 89999999987654 33332 2455778889998 788899999999999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCC-CEEE
Q 004327 674 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN-GMVA 749 (761)
Q Consensus 674 Wdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg-~~La 749 (761)
||+++.....++ -..|...|..+.|.|+.. +|++++.|+.|+|||.+.-+.. .+.+|...|+++.|+|.. .+|+
T Consensus 198 ~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 198 WDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEccchhhhcch--hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999986433332 346777899999999875 4677788889999999876544 778999999999999975 5888
Q ss_pred EEECCCeEEEc
Q 004327 750 SASHDKCVKIW 760 (761)
Q Consensus 750 Sgs~DG~I~IW 760 (761)
+++.|..|.+|
T Consensus 276 s~~SDs~V~Ls 286 (370)
T KOG1007|consen 276 SGGSDSAVNLS 286 (370)
T ss_pred ecCCCceeEEE
Confidence 99999999887
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.1e-14 Score=163.45 Aligned_cols=268 Identities=15% Similarity=0.201 Sum_probs=192.4
Q ss_pred ccccceecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEEc-CC----CeEEEEecc-------CC
Q 004327 456 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT-ES----FTVKSTLEE-------HT 521 (761)
Q Consensus 456 ~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWdl-~t----~~~~~~l~~-------h~ 521 (761)
...++|++.++..+..+..-......|+.+.+-. |..+|++|+.||.|+||+- .+ .+.+..+.+ ..
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r 1165 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR 1165 (1387)
T ss_pred ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCC
Confidence 3567899999887776665556667899999976 5668999999999999953 22 233333221 11
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--- 598 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--- 598 (761)
+.=.-+.|.....+|++++.-..|+|||.+..........+....|+++.-+-.+..++++|..||.|++||.+...
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 11134567766667777777889999999986654444455566788887766667888899999999999998533
Q ss_pred eeeEEe-cCC--CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeE--EEEEcCC---CCCEEEEEEcCCCCEEEEEeCC
Q 004327 599 CAGVFK-CQS--GATQMRFQPRLG-RILAAAIENYISILDVETQVC--RLKLQGH---KNQVHSVCWNTSGEYLASVSDE 669 (761)
Q Consensus 599 ~~~~~~-~~~--~i~~l~fspd~~-~Llags~dg~I~IwDl~t~~~--i~~l~~h---~~~I~sl~~spdg~~LasgsDg 669 (761)
.+..++ +.. +|..+.+.+.|- .|++|+.+|.|++||++.... ...+..| .+.++++..+++..+|++|+.+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence 334443 222 378888888554 599999999999999997422 2222222 2358999999999999999999
Q ss_pred eEEEEECCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 670 LVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 670 ~I~IWdl~s~~~~~~i~~----l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
.|+||++..... ..+.. +....+.+.|++|||..-.+++|..|..|.||.....
T Consensus 1326 ~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999875322 12211 1123456799999999999999999999999987654
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.9e-14 Score=145.27 Aligned_cols=279 Identities=14% Similarity=0.148 Sum_probs=205.5
Q ss_pred ccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 004327 428 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLW 506 (761)
Q Consensus 428 ~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VW 506 (761)
.-++|+++|+.|..+.+|...... .....+++.... .|...|+|++|....++|++|+.+++|.+.
T Consensus 66 ~N~~~L~SGGDD~~~~~W~~de~~-------------~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 66 HNDRFLASGGDDMHGRVWNVDELM-------------VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred cCCeEEeecCCcceeeeechHHHH-------------hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 346788888888777777221110 001112344443 456899999999999999999999999999
Q ss_pred EcCCCeEEEEecc--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEE
Q 004327 507 CTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCS 582 (761)
Q Consensus 507 dl~t~~~~~~l~~--h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i--~~~~~h~~~V~sl~fsp~g~~llas 582 (761)
|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++.....+ ............+.|+|....+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9999988877742 23489999999999999999999999999998654222 2333445678899999999999999
Q ss_pred EeCCCcEEEEECCCCee-eeEEe----c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCC-----
Q 004327 583 CDNNSEIRYWSINNGSC-AGVFK----C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHK----- 648 (761)
Q Consensus 583 gs~Dg~I~vWDl~t~~~-~~~~~----~---~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~-i~~l~~h~----- 648 (761)
.+..+-+.+||++.... +..+. . ......+.|+|.|+.|++.-....-.+||+-+..+ +..+. |+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~ 291 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYC 291 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcce
Confidence 99999999999985332 11111 1 12336789999999999888777778889887543 44443 32
Q ss_pred --CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC--------------------ceeEEEeecCCCceEEEEEeCCCC
Q 004327 649 --NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 649 --~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~--------------------~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
..+.+++|..|-. +++|+ +-.|++|.+..... ...+..+.+|...+..+.|+|...
T Consensus 292 N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 2467788876554 78888 55999999853210 123445788999999999999999
Q ss_pred EEEEEEcCCcEEEEEC
Q 004327 706 SLLVIGCYETLELWNM 721 (761)
Q Consensus 706 ~L~sgs~dg~I~IwDl 721 (761)
.|++.+-.+.++||.-
T Consensus 371 ~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 371 LLVSSGVENSFKLWSD 386 (609)
T ss_pred eEeccchhhheecccc
Confidence 9999999999999964
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.4e-12 Score=133.78 Aligned_cols=232 Identities=15% Similarity=0.227 Sum_probs=162.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEE-EeCC------CeEEEEecCCCC
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENPD 554 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~D------G~I~VWDl~t~~ 554 (761)
..+++|+.|...+++|..+ -.+||+++..+.......+.+.+.-+...-..++|+. |+.+ ..|.|||=. .+
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-KE 85 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-cC
Confidence 4559999999999988755 5899999886654443333333322222223445554 3332 479999943 33
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEecC---CCeeEEEEecCCCEEEEEE-cCCe
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQ---SGATQMRFQPRLGRILAAA-IENY 629 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-t~~~~~~~~~~---~~i~~l~fspd~~~Llags-~dg~ 629 (761)
.++.++. ...+|.++.+.++ .+++.- .+.|+||... +-+.++.+... .+..+++-..+...|+.-+ .-|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 4455544 6688999999975 444333 6789999987 45566655532 2332332222323333333 3589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeec--CCCceEEEEEeCC
Q 004327 630 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPT 703 (761)
Q Consensus 630 I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~s~~~~~~i~~l~~--~~~~I~sl~fspd 703 (761)
|.|.|+...+. ...+.+|...|.|++.+-+|..+|+++ .| .|||||..++ ..+.+++. ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCCC
Confidence 99999987655 467788999999999999999999999 66 7999999998 55666543 3457999999999
Q ss_pred CCEEEEEEcCCcEEEEECCC
Q 004327 704 FPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~ 723 (761)
..+|++++..|+|+||.++.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998865
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=9e-14 Score=147.26 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=148.7
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~ 646 (761)
.+++|+.+| ..+++++.||++|||+.... .......++..|.++.|+||+..|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 678899885 67779999999999996554 444555678899999999999999999999 999999999976666553
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEECCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 647 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 647 --h~~~I~sl~~spdg---~~Lasgs---Dg~I~IWdl~s~~~~~--~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
.+..+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|.+++++++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23346677888777 4433333 4477777775433211 122223345579999999999999999999999
Q ss_pred EEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 717 ELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 717 ~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
-||+..+-+.+ ....|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 99999998877 445899999999999999999998888877653
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.3e-13 Score=141.37 Aligned_cols=227 Identities=18% Similarity=0.284 Sum_probs=176.3
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 594 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~--~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl 594 (761)
+.....+|+|.+|++|...+|++.....|.||...... ....++..|...|++|+|.|..+.++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33345789999999999999999999999999987655 35678999999999999999976665 9999999999999
Q ss_pred -CCCee---eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 595 -NNGSC---AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 595 -~t~~~---~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i----~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
..++. +..++++...+++.|+|.++.|++++....|.||-++....- +.-+.+...|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 44432 334557788999999999999999999999998877643221 2223467789999999999999999
Q ss_pred e-CCeEEEEECC-----CCC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc--EEE
Q 004327 667 S-DELVRVWSIG-----SGS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 728 (761)
Q Consensus 667 s-Dg~I~IWdl~-----s~~----------~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~ 728 (761)
+ |+..+||..- ... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 9999998742 100 012233444567889999999999999999999999999987764 223
Q ss_pred EccCCCCeeEEEEeCC
Q 004327 729 LSAHDKLVSSLAASTV 744 (761)
Q Consensus 729 l~~h~~~V~slafspd 744 (761)
...-.-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3323356667776544
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.5e-11 Score=135.22 Aligned_cols=261 Identities=12% Similarity=0.124 Sum_probs=181.9
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCeEEEEEcCCC--e--EEEEeccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecC
Q 004327 481 KVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 551 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~----Dg~I~VWdl~t~--~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl~ 551 (761)
....++++|++++|+++.. ++.|..|++... + .+............++++|++++|+++.+ +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3567899999999999877 479999987653 3 33444434455678999999999999875 8999999998
Q ss_pred CCCceeEE--eec-----------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eee----EEecCCCeeEE
Q 004327 552 NPDYSLRT--FTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGATQM 612 (761)
Q Consensus 552 t~~~~i~~--~~~-----------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--~~~----~~~~~~~i~~l 612 (761)
........ ... ......++.|+|+++.++++.-....|++|++.... ... .+....+...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 75432221 111 124578999999998888776666689999997654 322 22344668999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEcCC------CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCC-
Q 004327 613 RFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQGH------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGS- 678 (761)
Q Consensus 613 ~fspd~~~Llags~-dg~I~IwDl~--t~~--~i~~l~~h------~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s- 678 (761)
.|+|+++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++. ++.|.+|++..
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888876 6889999988 442 22222211 12578899999999999888 77999999943
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEEC--CCCcEEEEc--cCCCCeeEEEE
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 741 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl--~~~~~~~l~--~h~~~V~slaf 741 (761)
......+..+.........+.++|+|++|+++..+ +.|.+|++ +++.+.... ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 33445666666666678999999999999999865 48888866 566655322 23345666665
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.5e-13 Score=152.75 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=155.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE-EEeCCC--eEE
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 546 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~DG--~I~ 546 (761)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677889999999999999988743 469999998876543 333445566889999999775 445555 599
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~--I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llag 624 (761)
+||+.++. ...+..+......++|+|++..++++...+|. |+++|+.+++...............|+|++++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 45555566666789999999888877665655 777787776654433333344578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 625 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 625 s~dg---~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D-g--~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
+.++ .|.+||+.+++.. .+. +........|+|||++|+..+ + + .|+++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455779999999887766 2 2 6788887542 23334444455666
Q ss_pred EEEeC
Q 004327 698 CVFHP 702 (761)
Q Consensus 698 l~fsp 702 (761)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77766
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=3.3e-15 Score=167.79 Aligned_cols=240 Identities=18% Similarity=0.220 Sum_probs=181.9
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+....+||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|++.|++|+|+|-- +.+.||++++||
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd 298 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWD 298 (1113)
T ss_pred hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecc
Confidence 3567789999999999999999999999999999999999999999999999999999999964 678899999999
Q ss_pred cCCCCceeEEee------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEE
Q 004327 550 TENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRIL 622 (761)
Q Consensus 550 l~t~~~~i~~~~------~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~-~~Ll 622 (761)
.+- ....+. ....-+.++-|..++.. +.+++.|++-..|.+....+.. ..+.-+.++.+. .+.+
T Consensus 299 ~r~---~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 299 ARL---EPRIYVPRPLKFTEKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred ccc---cccccCCCCCCcccccceeeeeccccccc-cccccCCcccccchhhHhhhhc-----cceEEEeccccccccce
Confidence 881 111111 12244566666666544 4589999988888765321110 001111111121 3455
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE-Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 623 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 623 ags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Las-gs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
++-.+-.+.+|++.++...+.+.+|...+..+.++|-+..++- ++ ||...|||+-.+. .+..+......+....|
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kF 446 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKF 446 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC---cceeeecccceeecccc
Confidence 6666788999999999999999999999999999997766553 44 9999999998874 33333344677888999
Q ss_pred eCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 701 HPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 701 spdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
+++|..+++...-|.++|...-.++
T Consensus 447 Sqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 447 SQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCCceEecCCCCCceEEeccCCCc
Confidence 9999999998888899998875554
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6e-13 Score=150.50 Aligned_cols=220 Identities=17% Similarity=0.167 Sum_probs=153.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 548 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG--~I~VW 548 (761)
+..+...+.+.+|+|||+.||..+. +..|.+|++.+++... +....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4456778999999999999887653 3579999998875433 22233345578999999988765 4454 58899
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~--I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~ 626 (761)
|+.++. ...+..+...+....|+|+++.++++...++. |+++|+.++................|+|++++|+..+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 34455555678899999999888777665554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 627 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 627 d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg---~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
+ ..|++||+.++.... +.. ........|+|||++|+..+ ++ .+.++++.. .....+..+.+.+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcc
Confidence 4 368899998876443 332 12345678999999998887 55 477778743 33445556677788888
Q ss_pred EeCC
Q 004327 700 FHPT 703 (761)
Q Consensus 700 fspd 703 (761)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=2.5e-14 Score=154.15 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=163.7
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEE
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 571 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~ 571 (761)
..|+.++.||.+.|.+ ..++....+..|.+.|.|-+|+|||.-|++++.||.|++|.-.. ....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688888899999887 45677788899999999999999999999999999999998653 22334455667899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 004327 572 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 650 (761)
Q Consensus 572 fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~ 650 (761)
|.|+.+.++++.+ +.+.|=.+.....+...+ +.+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887664 466666665544444444 55568999999999999999999999999976 4556666679999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 004327 651 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 718 (761)
Q Consensus 651 I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 718 (761)
|++++|.|+ +.++.++-+++++=.. ..+.|..++|++||..+++|+..|.|.+
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999 6667677666663222 3467888999999999999999996654
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=9.9e-13 Score=148.00 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=162.4
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
..|.++|.+... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+.+.+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 44455566779999999999999887754 4799999987653 33444556677899999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004327 578 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 578 ~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d-g--~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
.++++.+.++ .|++||+.++................|+|++.+|+.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999877655444433445577999999988877653 3 6888898877643 3333556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCc
Q 004327 653 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 725 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg---~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~ 725 (761)
.+.|+|+|++|+.++ ++ .|.+||+.++.. ..+.. ........|+|++++|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 789999876421 12221 12234568999999998888765 56676765544
Q ss_pred EEEEccCCCCeeEEEE
Q 004327 726 TLTLSAHDKLVSSLAA 741 (761)
Q Consensus 726 ~~~l~~h~~~V~slaf 741 (761)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555655555
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=2.7e-11 Score=133.18 Aligned_cols=267 Identities=14% Similarity=0.180 Sum_probs=182.4
Q ss_pred EEEEECC----CeEEEEEc--CCCeEE--EEeccCCcceEEEEEcCCCCEEEEEeC----CCeEEEEecCCCCcee---E
Q 004327 494 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---R 558 (761)
Q Consensus 494 Lasgs~D----g~I~VWdl--~t~~~~--~~l~~h~~~V~~v~fspdg~~Lasgs~----DG~I~VWDl~t~~~~i---~ 558 (761)
+++|+.. +.|.+|++ ++++.. ..+ ........++++|++++|+++.. ++.|..|++......+ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566665 68888877 444433 222 23345677999999999999877 4799999988652112 2
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---Ee-----------cCCCeeEEEEecCCCEEEE
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~---~~-----------~~~~i~~l~fspd~~~Lla 623 (761)
...........++++|+++.++++...+|.|.+|++.. +..... +. ......++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 23323445677999999998988888899999999987 443332 21 1245789999999999988
Q ss_pred EEc-CCeEEEEECCCCe--E--EEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeecC---
Q 004327 624 AAI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT--- 691 (761)
Q Consensus 624 gs~-dg~I~IwDl~t~~--~--i~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~l~~~--- 691 (761)
... ...|.+|++.... . ...+. .....-..++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 876 4689999987654 2 22222 2445678999999999998887 789999999822 122333333221
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcC-CcEEEEECC--CCcEE---EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEcC
Q 004327 692 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 761 (761)
Q Consensus 692 ---~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~--~~~~~---~l~~h~~~V~slafspdg~~LaSgs-~DG~I~IWd 761 (761)
......++++||+++|+++... +.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988764 489999983 34443 2333345589999999999998887 567888874
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.6e-12 Score=141.97 Aligned_cols=267 Identities=19% Similarity=0.278 Sum_probs=176.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-----eCC-----CeEEEEe
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD 549 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-----s~D-----G~I~VWD 549 (761)
.+++..+++++|+++|.+. +..|+|++..++..+.+...- .++++.|+|-+.+|.+- ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467889999999888876 678999999888655554433 78999999999988763 122 3477999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe--------------------
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-------------------- 609 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i-------------------- 609 (761)
+++ .+....+..-...-+++.|+.|.. ++ .--..+.+.+|++.+.+.+..--+..++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 998 433333332222225777777642 22 1112456677766542211111111112
Q ss_pred --------------------------------eEEEEecCCCEEEE-EEc-----------CCeEEEEECCCCeEEEEEc
Q 004327 610 --------------------------------TQMRFQPRLGRILA-AAI-----------ENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 610 --------------------------------~~l~fspd~~~Lla-gs~-----------dg~I~IwDl~t~~~i~~l~ 645 (761)
..+.|.+.+.-|++ ++. +..++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 23445554443332 221 2257777777445555544
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEE
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 719 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~Iw 719 (761)
..++|++++|+++++-++++. -.++.|||++. .. .+....++-.++.|+|.|++|+.++-++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KP--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CE--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 578999999999998777665 56999999964 23 3444577888999999999999988764 89999
Q ss_pred ECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEEC------CCeEEEcC
Q 004327 720 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 761 (761)
Q Consensus 720 Dl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~------DG~I~IWd 761 (761)
|+.+.+++ .+... .-+-+.|+|||.+|+|+.. |+.++||+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 99997777 33332 3456789999999998875 68899995
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.9e-13 Score=150.58 Aligned_cols=223 Identities=17% Similarity=0.174 Sum_probs=151.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE-EEeCCCeEEEEe
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 549 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~DG~I~VWD 549 (761)
.+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999887743 359999999886543 333445667899999999886 467788767766
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl--~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d 627 (761)
++........+..+...+....|+|+|..+++++..++...+|.+ .++................|+|++++|+..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 543222345566566667788999999888877665666666654 445433333222334568899999999887765
Q ss_pred C---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 628 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 628 g---~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
+ .|++||+.+++...... ........|+|||++|+.++ .+ .+++.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999998876543322 23446789999999988877 33 45666663 2 233334445566677777
Q ss_pred eCC
Q 004327 701 HPT 703 (761)
Q Consensus 701 spd 703 (761)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=4.6e-13 Score=138.23 Aligned_cols=277 Identities=17% Similarity=0.320 Sum_probs=188.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-----EEEEeccC------------CcceEEEEEcCCCC--EEEEE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSLS--RLATS 539 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-----~~~~l~~h------------~~~V~~v~fspdg~--~Lasg 539 (761)
.+-|.+|.|..+|.+||+|..+|.|.+|.-+... ....+..| ...|..++|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3458999999999999999999999999543221 22333333 34588999988654 67778
Q ss_pred eCCCeEEEEecCCCCcee----------------------------------EE-eecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 540 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~~i----------------------------------~~-~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
+.|.+|++|.+....... +. -.+|+..|.+|.++.|...++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 899999999876432111 11 135778899999999977666 554
Q ss_pred CCCcEEEEECCC-CeeeeEEec--------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 004327 585 NNSEIRYWSINN-GSCAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------RLK----- 643 (761)
Q Consensus 585 ~Dg~I~vWDl~t-~~~~~~~~~--------~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~------i~~----- 643 (761)
|-.|.+|+++- ..+...... ..-|++..|+|.. +.++..+..|.|++.|++.... +..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 88999999874 222222221 1237888999954 5677788899999999984321 111
Q ss_pred -----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 004327 644 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 703 (761)
Q Consensus 644 -----l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~------------~---~I~sl~fspd 703 (761)
|..--..|..+.|+++|+|+++-+--+|++||+.... ..+.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1111236788999999999998877899999996543 2333333221 1 1246889999
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEE--EEc--------------------cC-------------CCCeeEEEEeCCCCEE
Q 004327 704 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 748 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~--~l~--------------------~h-------------~~~V~slafspdg~~L 748 (761)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|....|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996554322 110 00 1125567899999999
Q ss_pred EEEECCCeEEEc
Q 004327 749 ASASHDKCVKIW 760 (761)
Q Consensus 749 aSgs~DG~I~IW 760 (761)
|.+..+. ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887655 4443
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.4e-12 Score=133.75 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=171.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECC
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 595 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i-~~~~~h~~~V~sl~fsp~g~~llasgs~D------g~I~vWDl~ 595 (761)
....++|+.|...+++|..+| .+||+++--+... +.+....-.+..+-|- .+.+.+.|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998877 8999987532211 1111111223333333 23555556544 479999988
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCC--CCCEEEEEEcCCCCEEEEEe--CCe
Q 004327 596 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS--DEL 670 (761)
Q Consensus 596 t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~-t~~~i~~l~~h--~~~I~sl~~spdg~~Lasgs--Dg~ 670 (761)
..+++..+....+|..+.+.++ .++.-.++.|+||... +.+.++.+... ...+.+++-..+..+|+.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999986 4555567999999988 44555555432 33455555444556777666 789
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEE-EEc--cCCCCeeEEEEeCCCC
Q 004327 671 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 746 (761)
Q Consensus 671 I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~--~h~~~V~slafspdg~ 746 (761)
|.|-|+...... .-..+..|...|.+++++-+|..+++++..| -|+|||..+++.+ .+. .....|.+|+|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999875331 3456788999999999999999999999999 5899999999888 443 3456799999999999
Q ss_pred EEEEEECCCeEEEc
Q 004327 747 MVASASHDKCVKIW 760 (761)
Q Consensus 747 ~LaSgs~DG~I~IW 760 (761)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.6e-13 Score=141.33 Aligned_cols=261 Identities=15% Similarity=0.201 Sum_probs=197.2
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCeEEEEEcCCCeEEEE------eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 478 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 478 H~~~V~~lafSpdg~--~Lasgs~Dg~I~VWdl~t~~~~~~------l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
-...|+.++|.-|++ .|...+.|..+..+++........ .......|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345578888877665 344444666677776665544433 23445666666654 34788888999999999
Q ss_pred cCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEec----------CCCeeEEEE
Q 004327 550 TENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 614 (761)
Q Consensus 550 l~t~~---~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D--g~I~vWDl~t~~~~~~~~~----------~~~i~~l~f 614 (761)
.+.+. .++..+..+ ..+..+.-++...+++++|+.. ..+.+||+...+.+..-+. +-.++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 88543 123333333 5577788888888999999988 8999999998755544331 223577889
Q ss_pred ecC--CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE-ee
Q 004327 615 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LS 689 (761)
Q Consensus 615 spd--~~~Llags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~-l~ 689 (761)
-+. ...|++++.-+.|++||.+.+ +++..|.--..+|+++...|++++|+++. -+.+..||++.+ ..... +.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999976 67888887888999999999999999999 899999999987 33333 66
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCC
Q 004327 690 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 690 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspd 744 (761)
+..+.|.++..+|.++++++++-|..|+|+|+.+.+++.-..-...+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7788999999999999999999999999999999777644444556777777554
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.6e-12 Score=147.52 Aligned_cols=222 Identities=13% Similarity=0.120 Sum_probs=157.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE-EEeCCCe--E
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--V 545 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~DG~--I 545 (761)
.+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3456678889999999999999888764 468999999887654 4445666788999999999775 4555554 7
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE
Q 004327 546 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Lla 623 (761)
++||+.++. ...+..+........|+|++..++++...+| .|++||+..+...........+....|+|++++|+.
T Consensus 273 y~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 273 YTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred EEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEE
Confidence 777887654 4556666666788999999988877665444 688889887665554444455677899999999988
Q ss_pred EEcC---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-----CeEEEEECCCCCCceeEEEeecCCC
Q 004327 624 AAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 624 gs~d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-----g~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
...+ ..|.+||+.++.. ..+. ....+..+.|+|||++|+... . ..++++|+..+. ...+. ...
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~ 423 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPG 423 (435)
T ss_pred EEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCC
Confidence 7653 3688899866543 2232 233567889999999887655 2 257778876542 22332 233
Q ss_pred ceEEEEEeCC
Q 004327 694 KFHSCVFHPT 703 (761)
Q Consensus 694 ~I~sl~fspd 703 (761)
.+...+|+|-
T Consensus 424 ~~~~p~Wsp~ 433 (435)
T PRK05137 424 DASDPAWSPL 433 (435)
T ss_pred CccCcccCCC
Confidence 4566677663
No 228
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=6.3e-13 Score=139.95 Aligned_cols=279 Identities=13% Similarity=0.131 Sum_probs=181.9
Q ss_pred ccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 004327 421 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 500 (761)
Q Consensus 421 ~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D 500 (761)
+....+.....++++|+.++.+-+|...+........ -.......+...+.+++|...|+.++|+||+.++++++-|
T Consensus 68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc---hhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 3333444444688999999999999554411110000 0011234567788899999999999999999999999999
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCC-CeEEEEEcCCCCcE
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDL 579 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~-~V~sl~fsp~g~~l 579 (761)
..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+..... ...|.. .+...++.+.
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~~~~~~~~---- 216 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMPAKAFNER---- 216 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEeeecccCCC----
Confidence 9999999999999999999999999999999999999999998777776654221 111111 0111111111
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc----CC-----eEEEEECCC-CeEEEEEcCCCC
Q 004327 580 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLKLQGHKN 649 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~----dg-----~I~IwDl~t-~~~i~~l~~h~~ 649 (761)
.....++|.=++.+ .-...++|+|+|..+++.+. ++ ..++|+-.. .++...+.....
T Consensus 217 -----e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k 283 (434)
T KOG1009|consen 217 -----EGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK 283 (434)
T ss_pred -----CcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc
Confidence 11122222222111 22345677788777766432 22 335555432 234444444444
Q ss_pred CEEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 650 QVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 650 ~I~sl~~sp------------------dg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
++..+.|+| .+..++.++.+.|+|||..+.....++. ..|-..++.++|+++|.++++.+
T Consensus 284 ~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 284 PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred ceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe--eeeeeeecceeecCCCcEEEEec
Confidence 444444443 3445677778899999998764433333 34678899999999999999999
Q ss_pred cCCcEEEEECCCCc
Q 004327 712 CYETLELWNMTENK 725 (761)
Q Consensus 712 ~dg~I~IwDl~~~~ 725 (761)
.||...+..++..+
T Consensus 362 ~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 362 TDGFCSLVTFEPWE 375 (434)
T ss_pred cCCceEEEEEcchh
Confidence 99976666555544
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.9e-12 Score=145.17 Aligned_cols=234 Identities=15% Similarity=0.049 Sum_probs=164.0
Q ss_pred eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 004327 502 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 502 ~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
.|.++|.+.... ..+..+...+....|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788875543 4455667789999999999999877654 3689999987653 333434455667899999988
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEEcCCCCCEEE
Q 004327 579 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 653 (761)
Q Consensus 579 llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-d--g~I~IwDl~t~~~i~~l~~h~~~I~s 653 (761)
++++...++ .|++||+.++................|+|+++.++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776555 688899998776554444445667899999998887765 3 368888988776433221 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcE
Q 004327 654 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 726 (761)
Q Consensus 654 l~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~ 726 (761)
..|+|||++|+... ++ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 222 21 11223568999999998887653 688888876655
Q ss_pred EEEccCCCCeeEEEEeCC
Q 004327 727 LTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 727 ~~l~~h~~~V~slafspd 744 (761)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 555556677888888873
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=1.4e-14 Score=154.22 Aligned_cols=229 Identities=15% Similarity=0.184 Sum_probs=189.8
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
..-..+.|+.+|.+|+.|+..|.|..+|..+... ..-..-...|.++.|..+. .+||++- ...++|||-. |..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHne-q~~AVAQ-K~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNE-QFFAVAQ-KKYVYVYDNN-GTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcch-HHHHhhh-hceEEEecCC-CcEEe
Confidence 3457889999999999999999999999998664 2222244678999998774 5554443 6789999965 88888
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 680 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~ 680 (761)
.++....+..+.|-|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-+-.+-+|. .|+|.+|...+.
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 888889999999999877777788889999999999999999988889999999999999998888 999999998776
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
..+..+.+|.++|.++++.++|.|+++++.|..|+|||++....+ ++.. ..+...++||..| +++++....|.|
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 667778889999999999999999999999999999999987755 3332 5567888888665 444556667899
Q ss_pred cC
Q 004327 760 WK 761 (761)
Q Consensus 760 Wd 761 (761)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 84
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=7.2e-13 Score=139.09 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=182.9
Q ss_pred CCcceEEEEEcCCCC--EEEEEeCCCeEEEEecCCCCcee-----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004327 520 HTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 520 h~~~V~~v~fspdg~--~Lasgs~DG~I~VWDl~t~~~~i-----~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vW 592 (761)
....|+.++|.-++. .|+.++.|..+..+.+......- ........+|..+... +..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 345677778866543 45555466667777766544321 1344456677777765 2355588889999999
Q ss_pred ECCCCe----eeeEEecCCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEEcCC---------CCCEEEEEE
Q 004327 593 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCW 656 (761)
Q Consensus 593 Dl~t~~----~~~~~~~~~~i~~l~fspd~~~Lla-gs~d--g~I~IwDl~t~~~i~~l~~h---------~~~I~sl~~ 656 (761)
..+.+. .+..+....++..+.-++...+|++ |+.. +.+.|||++..+.++.-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998433 3444555677777887777666666 7777 89999999988766654432 125678889
Q ss_pred cCC--CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEcc
Q 004327 657 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 731 (761)
Q Consensus 657 spd--g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~ 731 (761)
-+. ...|++++ -+.|++||.+... +++..+.....++.++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8899999999664 677778888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 732 HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 732 h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..+.|++|..+|...+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999997
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=8.1e-13 Score=143.11 Aligned_cols=169 Identities=18% Similarity=0.272 Sum_probs=130.3
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEe----ccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCC---------
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 554 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l----~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~--------- 554 (761)
+++--|+.|-.-|.|.+.|....+..+.+ .-....|+|+.|.|. ...++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45556788888889998886552222111 123478999999994 4567777789999999764210
Q ss_pred ------c------------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEe
Q 004327 555 ------Y------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQ 615 (761)
Q Consensus 555 ------~------------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fs 615 (761)
+ ++..+....+.|..++|+||| .+||+.+.||.++|||..+.+++..++ ..++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 111222234578899999986 566688899999999999887766554 34789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 004327 616 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 658 (761)
Q Consensus 616 pd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~sp 658 (761)
||+++|++|+.|..|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=7.5e-12 Score=138.23 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=171.9
Q ss_pred CEE-EEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 004327 492 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 570 (761)
Q Consensus 492 ~~L-asgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl 570 (761)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEecC-CCcceE
Confidence 344 4455689999999999999999976555445578999999999999999999999998774 6666543 346889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC--------CCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 641 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~--------~~i~~l~fspd~~~Llags~d-g~I~IwDl~t~~~i 641 (761)
+++++|+++++++..++.+.++|.++.+.+..+... ..+..+..+|....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999989999999999999999998887642 246678888888877777665 89999998765332
Q ss_pred -EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 004327 642 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 704 (761)
Q Consensus 642 -~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~----~~~~I~sl~fspd----------g 704 (761)
..............|+|+++|++++. ++.|-++|..+. ..+..+.. |..+...+ .+|. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 22333455678899999999988876 779999999876 33333221 12222221 2222 2
Q ss_pred CEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEE----ECCCeEEEcC
Q 004327 705 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSg----s~DG~I~IWd 761 (761)
...++.-..+.+.+||....+.+ .+...... .-+..+|++++|++. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 33333333446667888888888 44444444 778889999999988 3447787765
No 234
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=8.6e-13 Score=136.38 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=192.6
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-cCCCeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd-l~t~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
..+..+..++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34455677899999999999999888899999999999994 34444443332 34567899999999999999999999
Q ss_pred EEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 004327 545 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 545 I~VWDl~t~---~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
+.-+.+... ....+.+..|...|..+.|+-.. ..+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998876532 12356777899999999998764 5566888787665444455555544444344444444332 55
Q ss_pred EEEEcCCeEEEEEC--CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 622 LAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 622 lags~dg~I~IwDl--~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
++|...|.|.+..+ ..-..+.++.+|.+.+++++|.+...+|++|. |..+.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 66666776666544 44577889999999999999999999999998 9999999997542 4666778888999999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
...+.-..+++++.||.|.+||++..
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 88888888999999999999998653
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=134.70 Aligned_cols=228 Identities=16% Similarity=0.199 Sum_probs=162.4
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 597 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~---- 597 (761)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...|+.|.. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4577899999777889999999999999876 32222222344679999999998888877774 56999986521
Q ss_pred e--------eeeEE--ecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 598 S--------CAGVF--KCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 598 ~--------~~~~~--~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
. +...+ ..+..|+++.|.+|+..+++++. +..|.|||..++..+.......+.+.-+.|+|||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 11122 23456999999999999998887 5799999999987665544456778899999999999999
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC--CCCc----------EE------
Q 004327 667 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENK----------TL------ 727 (761)
Q Consensus 667 s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~~~~----------~~------ 727 (761)
. |+..++|..... ..........+.|...+|+|+|.+|+.+.... -++|.+ .... .+
T Consensus 257 t~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 257 TCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred cccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccc
Confidence 8 999999965432 12222333455899999999999877666543 223332 1110 11
Q ss_pred ---EEcc----CCCCeeEEEEeCCCCEEEEEECCC
Q 004327 728 ---TLSA----HDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 728 ---~l~~----h~~~V~slafspdg~~LaSgs~DG 755 (761)
+... ..+++.+++|.|.|.+||+.-..+
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 246789999999999999876543
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.7e-12 Score=143.93 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=159.6
Q ss_pred eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC-C--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 004327 502 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 502 ~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-G--~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++.. ..+....+......|+|+++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 667778765443 4455567789999999999998877543 2 588899987653 223323344457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEE
Q 004327 579 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS 653 (761)
Q Consensus 579 llasgs~Dg~--I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg--~I~IwDl~t~~~i~~l~~h~~~I~s 653 (761)
++++.+.++. |++||+.+++...............|+|++++++..+. ++ .|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8887777775 88889988776554444445677899999998887765 33 6788888877644322 12233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcE
Q 004327 654 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 726 (761)
Q Consensus 654 l~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~ 726 (761)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++.+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566678776532 122211 1223458999999988877654 478888865555
Q ss_pred EEEccCCCCeeEEEEeCC
Q 004327 727 LTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 727 ~~l~~h~~~V~slafspd 744 (761)
..+..+.+.+...+|+|-
T Consensus 430 ~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677888899873
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=149.04 Aligned_cols=215 Identities=18% Similarity=0.264 Sum_probs=159.0
Q ss_pred EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEE
Q 004327 513 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 591 (761)
Q Consensus 513 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~v 591 (761)
....+.+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999998766555667899999999999986 5678889999999999
Q ss_pred EECCCCe----------eeeEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEE----------EEcCCCC
Q 004327 592 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRL----------KLQGHKN 649 (761)
Q Consensus 592 WDl~t~~----------~~~~~~-~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~----------~l~~h~~ 649 (761)
||+...+ ....+. +...|..++..|++ ..+.+++.||+|+-||++...... .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998422 222222 22457778888888 778999999999999998642111 1111223
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEECCCC--------C-------CceeEEEeec-C--------CC---ceEEEEE
Q 004327 650 QVHSVCWNTSG-EYLASVS-DELVRVWSIGSG--------S-------KGECIHELSC-T--------GN---KFHSCVF 700 (761)
Q Consensus 650 ~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~--------~-------~~~~i~~l~~-~--------~~---~I~sl~f 700 (761)
...|+.++|.. .+|++|+ |-..++||.+.. . ...|+..+.. | .. .++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56789999965 5677777 889999995321 0 0112322211 1 11 2456789
Q ss_pred eCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 701 HPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 701 spdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
+|+|..|++.-....|+++|+..++..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999998988888889999999887755
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=3.7e-12 Score=148.93 Aligned_cols=251 Identities=16% Similarity=0.211 Sum_probs=171.5
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCc
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~------~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
|+. .|..+..+..|...|..++.+++. .+|++|+.||+|++|++..-.. ...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 457788888999999999988755 9999999999999999864221 12244445678999999988765
Q ss_pred EEEEEeCCCcEEEEECCCCe-------eeeEEe--cCCCeeE-EEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEEc-
Q 004327 579 LLCSCDNNSEIRYWSINNGS-------CAGVFK--CQSGATQ-MRFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ- 645 (761)
Q Consensus 579 llasgs~Dg~I~vWDl~t~~-------~~~~~~--~~~~i~~-l~fspd-~~-~Llags~dg~I~IwDl~t~~~i~~l~- 645 (761)
++ .++.||.|.+.+++-.. +.+... ..+.+.. -+|... .. .+++++.-+.|..||++.......++
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 56889999999987521 111111 1222332 233322 23 57777888999999999876555544
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCC---CEEEEEEc--CCcEE
Q 004327 646 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTF---PSLLVIGC--YETLE 717 (761)
Q Consensus 646 -~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-~~~~~I~sl~fspdg---~~L~sgs~--dg~I~ 717 (761)
...+.|++++.+|.+.++++|+ .|.+.+||++-. ..+..+. .+..++..++.+|-. ...++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2457899999999999999999 899999999865 3333332 334666666666543 34554444 56899
Q ss_pred EEECCCCcEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 718 LWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 718 IwDl~~~~~~-~l~~h-------------------~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|++.++... ++... .-....+++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 22111 11122233334456999999999999998
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=2.2e-13 Score=139.70 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=159.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004327 526 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 604 (761)
Q Consensus 526 ~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~- 604 (761)
-++|+|+|+++|+++.- .+.|-|.++-.. ...+. .-..|.-+.|..+..++++....|+.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-HQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-HHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999866 677878776442 12222 235678899999988999999999999999999887776665
Q ss_pred cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004327 605 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 682 (761)
Q Consensus 605 ~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~ 682 (761)
...++..++|+|+|+.++..+. +-.|.||.+.+.+....-. .+..+..++|+|||++.+.++ .+..-.+.+...+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 4567899999999988776665 8899999999887655322 344568899999999999888 222222222222222
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..+.++....-..+.+.|+|||..|++ ||.--.-.+....-.-.+..++|+|.+.+|+.|+.|+.++|-
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 444555555566788999999996654 443221111112223468899999999999999999999874
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.8e-12 Score=138.03 Aligned_cols=238 Identities=15% Similarity=0.178 Sum_probs=173.9
Q ss_pred cCCcceEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004327 519 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 597 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~ 597 (761)
.|....+.|..+|||.|+ ++|.+.-.|+|||+.+-. ++.-......|..+....+.-.-+|.--.|.+|-+... +
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--Y 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhh--c
Confidence 577888999999999985 567778899999998743 33333333444444333332222223334777765433 2
Q ss_pred eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 598 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 598 ~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
.....+..+.....++++.-.--|++++....|+-++++.|..+..+....+.+++|..++-..+|++|+ +|.|.+||.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 2333444455566777777666788899999999999999999998888889999999999999999999 999999999
Q ss_pred CCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCC--CCeeEEEEeCC--
Q 004327 677 GSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV-- 744 (761)
Q Consensus 677 ~s~~~~~~i~~---l~~~~-----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~--~~V~slafspd-- 744 (761)
++......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|. -+|..+.|-+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 88643333222 11222 34899999999999999999999999999999999777664 57889999765
Q ss_pred CCEEEEEECCCeEEEcC
Q 004327 745 NGMVASASHDKCVKIWK 761 (761)
Q Consensus 745 g~~LaSgs~DG~I~IWd 761 (761)
...|+|+ +...++|||
T Consensus 285 q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWD 300 (703)
T ss_pred CceEEec-chHHhhhcc
Confidence 3456654 446789997
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.3e-11 Score=136.47 Aligned_cols=222 Identities=16% Similarity=0.156 Sum_probs=151.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEE-EeCCC--eEE
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 546 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~DG--~I~ 546 (761)
..+..|...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677789999999999999877644 369999998876543 3333445667999999998874 44455 688
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llag 624 (761)
+||+.++. ...+..+........|+|+++.++++...++ .|++||+.+++...............|+|++++++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999988887765554 5778888877754433222334567899999999887
Q ss_pred EcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 625 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 625 s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
..+ + .|.+||+.+++...... ........|+|||++|+..+ ++ .|+++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 753 3 58899998876433222 22233568999999988776 33 5777777432 22233334455666
Q ss_pred EEEeCC
Q 004327 698 CVFHPT 703 (761)
Q Consensus 698 l~fspd 703 (761)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 677663
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=9.4e-11 Score=132.44 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=158.7
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCE--E-EEEeCCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 575 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~--L-asgs~DG--~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~ 575 (761)
..|.+.|.+.+... .+......+.+-+|+|||+. + ++...+| .|.+.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777777665443 34445566788899999975 3 2444443 577778876653 334444555667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---eeeeEEecC-CCeeEEEEecCCCEEEEEEc-CC--eEEEEECCC-CeEEEE
Q 004327 576 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-EN--YISILDVET-QVCRLK 643 (761)
Q Consensus 576 g~~llasgs~Dg----~I~vWDl~t~---~~~~~~~~~-~~i~~l~fspd~~~Llags~-dg--~I~IwDl~t-~~~i~~ 643 (761)
|+.++++.+.+| .+.+|++..+ ......... ......+|+|||+.|+..+. +| .|+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775433 3444777653 333333322 23467899999998887764 55 455556542 233444
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CcE
Q 004327 644 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 716 (761)
Q Consensus 644 l~~h~~~I~sl~~spdg~~Lasgs--D--g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d---g~I 716 (761)
+..+...+....|+|||++|+... + ..|++||+.++.. ..+......+....|+|||++|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 444556678899999999988776 2 2799999987632 2222223456778999999988876553 379
Q ss_pred EEEECCCCcEEEEccCCCCeeEEEEeCCC
Q 004327 717 ELWNMTENKTLTLSAHDKLVSSLAASTVN 745 (761)
Q Consensus 717 ~IwDl~~~~~~~l~~h~~~V~slafspdg 745 (761)
++||+.+++...+....+.+...+|+|..
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666666778888998753
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=5.2e-11 Score=134.05 Aligned_cols=205 Identities=15% Similarity=0.187 Sum_probs=148.0
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~ 620 (761)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++..........+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455666777899999999998877665433 5799999998876655555566778999999998
Q ss_pred EEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCC
Q 004327 621 ILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 621 Llags~-dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
|++... ++ .|++||+.++... .+..+........|+|||++|+.++ ++ .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 33 6999999887543 3334545556789999999887766 23 68888887652 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 694 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
.+....|+|++++|++++.++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544332 2345678999999888777654
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.4e-10 Score=116.81 Aligned_cols=266 Identities=13% Similarity=0.103 Sum_probs=185.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCC--CeEE--EEeccCCcceEEEEEcCCCCEEEEEeC-CCeEEEE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 548 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t--~~~~--~~l~~h~~~V~~v~fspdg~~Lasgs~-DG~I~VW 548 (761)
.+.+.++-++|+|+.++|.++..+ |.|..|.++. |++. ........+-+.|++++++++|+++.+ .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455668899999999999888654 7788887764 4433 222222334488999999999999876 5799999
Q ss_pred ecCCCCcee--EEeecCCCC----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----EecCCCeeEE
Q 004327 549 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 612 (761)
Q Consensus 549 Dl~t~~~~i--~~~~~h~~~----------V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~----~~~~~~i~~l 612 (761)
-+....... .....|.+. +.+..|.|+++++++..-.--.|.+|++..+..... ++...+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 986643211 123345555 888999999866665443344799999997765432 3445678999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC
Q 004327 613 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 679 (761)
Q Consensus 613 ~fspd~~~Llags~-dg~I~IwDl~t~-~~i~~l~~---------h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~ 679 (761)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+.-.|.+++||++|+++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888877 899999998873 22222211 234567889999999999998 558999988754
Q ss_pred C-CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-cEEEEEC--CCCcEEEE--ccCCCCeeEEEEe
Q 004327 680 S-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 742 (761)
Q Consensus 680 ~-~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl--~~~~~~~l--~~h~~~V~slafs 742 (761)
. ....+.....+........|++++++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2 2344444455555578899999999999999877 6777755 45555422 2344456676664
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=7e-10 Score=120.51 Aligned_cols=256 Identities=11% Similarity=0.053 Sum_probs=170.0
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC----------CCeEEEEecCCCCceeEEeecCC------
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGHS------ 564 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----------DG~I~VWDl~t~~~~i~~~~~h~------ 564 (761)
+.|.|.|.++++.+.++.....+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544333 34 9999998887765 68999999998775 44333211
Q ss_pred -CCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-
Q 004327 565 -TTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 640 (761)
Q Consensus 565 -~~V~sl~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t-~~~- 640 (761)
.....++++|+|+.++++--. +..|.++|+.+++.+..+....+..-...+.+ .+.+.|.||....+.+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC--ccEEEeecCceEEEEecCCCceE
Confidence 223478999999888876644 89999999999999998887554433333332 222344555544433322 221
Q ss_pred EEE---EcCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEECCCCCC--ceeEEEeec-------CCCceEEEEEeCCCCE
Q 004327 641 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPS 706 (761)
Q Consensus 641 i~~---l~~h~~~I~-sl~~sp-dg~~LasgsDg~I~IWdl~s~~~--~~~i~~l~~-------~~~~I~sl~fspdg~~ 706 (761)
... +.....++. .-.|.+ +|++++...+|.|++.|+..... ...+..+.. ....+.-+++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111011110 013445 88988888899999999754321 111221111 1233445999999999
Q ss_pred EEEEEc----------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEcC
Q 004327 707 LLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs-~DG~I~IWd 761 (761)
+++... .+.|.++|..+++.+....-...+..++++||++ +|++.+ .++.|.|+|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 998542 2479999999999996555567899999999999 887666 578888875
No 246
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=4.4e-12 Score=127.03 Aligned_cols=242 Identities=16% Similarity=0.229 Sum_probs=163.8
Q ss_pred EEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC-----CCC----EEEEEeC
Q 004327 472 FQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-----SLS----RLATSSA 541 (761)
Q Consensus 472 v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp-----dg~----~Lasgs~ 541 (761)
...++ .|...|+.+...|+ ..|.+-+.|+.+.+|++.....+.. |.-.++++.|.+ .++ .++.-+.
T Consensus 48 ~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~r 123 (323)
T KOG0322|consen 48 LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR 123 (323)
T ss_pred chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCc
Confidence 34455 57778999998887 5788888999999999987554422 333344444433 111 1222111
Q ss_pred CCe-EEEEecCCCCceeEE----eecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEE-----------
Q 004327 542 DRT-VRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVF----------- 603 (761)
Q Consensus 542 DG~-I~VWDl~t~~~~i~~----~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t~~~~~~~----------- 603 (761)
... +.+-|..... .+.. -.+..+.++|..+..+ ...++++|.++|.|.+||+.++..+..+
T Consensus 124 gsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a 202 (323)
T KOG0322|consen 124 GSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA 202 (323)
T ss_pred ccchhhhhccCccc-eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh
Confidence 110 1112211110 0111 1123466777775432 2446677889999999999987433322
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--e--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 604 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 604 ~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~--~--~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
.+..++.++.|.+.-+.=+.++.+..+..|.+... . ....+.-..-.|..+.+-||++++++++ |+.|+||+.++
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt 282 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT 282 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc
Confidence 24467888999886666677888888888887643 1 1122222344678899999999999999 99999999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
. ..+..+.-|...|.+++|+|+.+.+++++.|..|.+|++
T Consensus 283 l---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 L---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred C---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7 677788889999999999999999999999999999986
No 247
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.2e-12 Score=138.43 Aligned_cols=250 Identities=17% Similarity=0.241 Sum_probs=188.6
Q ss_pred eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEE
Q 004327 512 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR 590 (761)
Q Consensus 512 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~ 590 (761)
.....+..|.+.|..|.|+..|..|++++.|..|.+||.......+....+|...|.-..|.|. +..-+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456788999999999999999999999999999999999888777888899999988888885 345567899999999
Q ss_pred EEECCCC-eee---eEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEE---cCCCC---CEEEEEEcCC
Q 004327 591 YWSINNG-SCA---GVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKL---QGHKN---QVHSVCWNTS 659 (761)
Q Consensus 591 vWDl~t~-~~~---~~~~~~~~i~~l~fspd~~~-Llags~dg~I~IwDl~t~~~i~~l---~~h~~---~I~sl~~spd 659 (761)
+=.+... .+. +..++.+++..++.-|+..+ |++++.|+.+.-+|++...+...+ ..+.. ..+.++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 9877543 222 34457788999999887654 788889999999999876433222 22333 5678899997
Q ss_pred CC-EEEEEe-CCeEEEEECCCCCCc---eeEEEe------ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc---
Q 004327 660 GE-YLASVS-DELVRVWSIGSGSKG---ECIHEL------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--- 725 (761)
Q Consensus 660 g~-~Lasgs-Dg~I~IWdl~s~~~~---~~i~~l------~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--- 725 (761)
.. .+++++ |..+++||.+.-... ..+..+ ......|++++|+.++.-|++.-.|..|++|.-.-+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 76 566666 899999998753221 111111 1234568999999998889999999999999543221
Q ss_pred ---------EE--EEccCCC--CeeEEEE-eCCCCEEEEEECCCeEEEcC
Q 004327 726 ---------TL--TLSAHDK--LVSSLAA-STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 ---------~~--~l~~h~~--~V~slaf-spdg~~LaSgs~DG~I~IWd 761 (761)
.+ .+.+|.. .|..+-| -|...|+++|++-|.|.|||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 11 2567754 4666654 57788999999999999997
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=7.6e-11 Score=133.18 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=142.7
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc--EEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCC
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 618 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~--llasgs~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~ 618 (761)
+.|.+.|.+... .+.+......+.+-+|+|||.. ++++...+ ..|++.++.+++........+......|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 356777776543 3445555666788899999876 33344444 36888899888766666556667788999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCe--EEEEECCCCCCceeEE
Q 004327 619 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH 686 (761)
Q Consensus 619 ~~Llags~-dg----~I~IwDl~t~---~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~--I~IWdl~s~~~~~~i~ 686 (761)
++|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++. |+++++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887764 22 3444676652 33333322333456789999999888766 554 4455553211 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC-C--CeEEEc
Q 004327 687 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 760 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~-D--G~I~IW 760 (761)
.+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766655556788999999998775443 2 345555
Q ss_pred C
Q 004327 761 K 761 (761)
Q Consensus 761 d 761 (761)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=1.9e-11 Score=123.22 Aligned_cols=146 Identities=17% Similarity=0.343 Sum_probs=107.2
Q ss_pred eeEEEEecCCCEEEEEEc----------CCeEEEEECCCC-eEEEEEcC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 004327 609 ATQMRFQPRLGRILAAAI----------ENYISILDVETQ-VCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 673 (761)
Q Consensus 609 i~~l~fspd~~~Llags~----------dg~I~IwDl~t~-~~i~~l~~-h~~~I~sl~~spdg~~Lasgs---Dg~I~I 673 (761)
-..+.|+++|.+|++-.. -+...+|.++.. ..+..+.- ..++|.+++|+|+|+.|++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346788888888776544 123445544321 23333322 345799999999999876653 669999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEE
Q 004327 674 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 750 (761)
Q Consensus 674 Wdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaS 750 (761)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 99962 4555553 5677899999999999998854 569999999888886656654 789999999999999
Q ss_pred EEC------CCeEEEcC
Q 004327 751 ASH------DKCVKIWK 761 (761)
Q Consensus 751 gs~------DG~I~IWd 761 (761)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 875 78889985
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=5.7e-11 Score=135.10 Aligned_cols=221 Identities=18% Similarity=0.189 Sum_probs=147.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEE-EeCCCe--EEE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 547 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~DG~--I~V 547 (761)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +..........+|+|||+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999998877543 258889998876532 2222334457899999998765 455664 777
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags 625 (761)
||+.++. ...+..+...+...+|+|++..++++...++ .|+++|+.+++...............|+|++++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4555556666778999999988887776554 47777887776544332222344578999999988876
Q ss_pred cC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 626 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 626 ~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .+++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 63 3 56778988876533 2222 1223458999999887766 33 477777643 2334444445566777
Q ss_pred EEeCC
Q 004327 699 VFHPT 703 (761)
Q Consensus 699 ~fspd 703 (761)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 77763
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=1.6e-10 Score=125.12 Aligned_cols=273 Identities=16% Similarity=0.223 Sum_probs=193.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCC---------------eEEEEEcCCCeEEEEeccCCcc--eE-EEEEcCCCCEEEEEeC
Q 004327 480 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 541 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg---------------~I~VWdl~t~~~~~~l~~h~~~--V~-~v~fspdg~~Lasgs~ 541 (761)
..|..+.|+|.++||.+=+... .+.|||+.++..+..+..-..+ .+ -+.|+-+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 3489999999999999865533 4999999999999999876665 55 68898888887655 3
Q ss_pred CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCc-EEEE-----EeCCCcEEEEECCCCeeeeEEec-CCCeeEEE
Q 004327 542 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 613 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~h-~~~V~sl~fsp~g~~-llas-----gs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~ 613 (761)
...++|+++ ++......+..- ...|....|+|.++. .||. .+.++.+++|.+..+..+..... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 446999997 444322222222 256888889987432 2232 35678899999987666554332 23345688
Q ss_pred EecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCC
Q 004327 614 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 679 (761)
Q Consensus 614 fspd~~~Llags~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~ 679 (761)
|.+.++++++-.. +..++++++....+.... .-.++|...+|.|+++.+++++ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 9999888766431 356889998855443333 5678999999999988776655 679999999864
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE----
Q 004327 680 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 752 (761)
Q Consensus 680 ~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs---- 752 (761)
.. +......-..+.|+|.++++++++-++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 22 223345556789999999999988775 89999988776653222223445678999999887764
Q ss_pred --CCCeEEEcC
Q 004327 753 --HDKCVKIWK 761 (761)
Q Consensus 753 --~DG~I~IWd 761 (761)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 378899996
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=8.2e-11 Score=118.56 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=110.4
Q ss_pred EEEEcCCCCEEEEEEC----------CCeEEEEEcCC-CeEEEEecc-CCcceEEEEEcCCCCEEEEEe--CCCeEEEEe
Q 004327 484 SCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATSS--ADRTVRVWD 549 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~----------Dg~I~VWdl~t-~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs--~DG~I~VWD 549 (761)
.+.|+++|++|++-.. -+...||.++. ......+.- ..++|.+++|+|+++.|++.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5789999988765433 13455555522 233334432 345799999999999876553 567999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 626 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs--~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~- 626 (761)
++. . .+..+ +...+..+.|+|+|+.++++|. ..|.|.+||+++.+.+..+.+. .++.++|+|+|++|+++..
T Consensus 90 ~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Ccc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 972 2 24444 3567889999999877775552 3478999999998888877654 5789999999999999875
Q ss_pred -----CCeEEEEECCCCeEEEE
Q 004327 627 -----ENYISILDVETQVCRLK 643 (761)
Q Consensus 627 -----dg~I~IwDl~t~~~i~~ 643 (761)
|+.++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 7889999985 444443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=2.3e-11 Score=141.13 Aligned_cols=266 Identities=16% Similarity=0.233 Sum_probs=182.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe------ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l------~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+++++..+-. +||+.|. .-.|.+||+..+..+..+ ..|.. .... .-.+.+++++..-+.+.+=+...
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~- 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN- 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh-
Confidence 4455555544 5666554 457999999887665443 23300 0000 00233455555444343332221
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-----eEEEEecCCCEEEEEEcCC
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i-----~~l~fspd~~~Llags~dg 628 (761)
..+....+.|....+..+. ..++....+..+.+||...+.....+.+.... .-+-++++.-++++|+.-+
T Consensus 81 ----~~~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 ----QIIERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ----hhhhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 1112222344444444443 34445555788999999887776666544432 1233455556788888899
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
.|.+|+......-..+.+|.+.|.++.|+.||.++++.+ |.++++|++.+.+... ...-+|...+..++|+|. ++
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--ee
Confidence 999999874433336889999999999999999999999 8899999999874333 245578999999999999 79
Q ss_pred EEEEcCCcEEEEECCCCcEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 708 LVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~~l~~h~-~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++++.|-+.++|+.+......+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999987666555666774 5799999999999999999999999996
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.8e-10 Score=127.01 Aligned_cols=187 Identities=18% Similarity=0.274 Sum_probs=151.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEecc---CCcceEEEEEc------C--------------CCCEEEEEeCCCeE
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 545 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~---h~~~V~~v~fs------p--------------dg~~Lasgs~DG~I 545 (761)
|-..|+|....||.++|||+.+++....|.. -++..++..|. | +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999887766632 23444555552 2 33467888889999
Q ss_pred EEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEE
Q 004327 546 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA 623 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~-~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Lla 623 (761)
.+|++..++...+.. ..|.+.|.++.++.+ -..|.+++.|+.+.+|+......++.+.... .+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877644443 568999999998876 4567799999999999999999988888544 4789999999988887
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEECCC
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 678 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd-----g~~Lasgs--Dg~I~IWdl~s 678 (761)
++ +.|.+||+++++.+..|.+|.++|.++.|..+ |.|+.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 79999999999999999999999999999876 78888776 66788887765
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.2e-10 Score=124.27 Aligned_cols=249 Identities=12% Similarity=0.162 Sum_probs=173.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC--EEEE-----EeCCCeEEEEecCCCCc
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLAT-----SSADRTVRVWDTENPDY 555 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~--~Las-----gs~DG~I~VWDl~t~~~ 555 (761)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+. .+|+ .+.-+.|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 689999987654332 346899999987544322 23677899999999633 3333 23456899998763221
Q ss_pred --e--eEEeecCCCCeEEEEEcCCCCcEEEEEeC--C---------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 004327 556 --S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 556 --~--i~~~~~h~~~V~sl~fsp~g~~llasgs~--D---------g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~ 620 (761)
. .++|. ...-..+.|++.+..+|+..+. | .+++++++....+.-.+...++|.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 1 12222 1223457788887777665432 2 3788889886677777777899999999999988
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 621 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 621 Llags--~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
++++. .-..+.|||++. .++..+ ..++-+++-|+|.|++|+.++ .|.+.|||+.+. +++..+... .
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--N 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccC--C
Confidence 76654 367999999974 445544 456778999999999999887 569999999874 566665543 3
Q ss_pred eEEEEEeCCCCEEEEEEc------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCC
Q 004327 695 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAASTV 744 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~------dg~I~IwDl~~~~~~~l~~h~~~V~slafspd 744 (761)
-+-+.|+|||.+|++++. |+.++||+.....+. ........+.++|-|.
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~-~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH-EKMFKSELLQVEWRPF 411 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee-hhhhhHhHhheeeeec
Confidence 456799999999999887 578999998655433 1122225677777653
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.4e-09 Score=111.44 Aligned_cols=261 Identities=11% Similarity=0.129 Sum_probs=181.2
Q ss_pred CCeEEEEEcCCCe--EE-EEeccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCCceeEEee---cCCCCeEEE
Q 004327 500 DKKAVLWCTESFT--VK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFT---GHSTTVMSL 570 (761)
Q Consensus 500 Dg~I~VWdl~t~~--~~-~~l~~h~~~V~~v~fspdg~~Lasgs~D---G~I~VWDl~t~~~~i~~~~---~h~~~V~sl 570 (761)
+.-|.+|++++.. .. ..+-.+...++-|+|+|+.++|+++..+ |.|..|.++...-.+..+. ....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999887322 11 1223566788999999999999988654 7788888775322232222 122334789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCC-Ceee---eEEecCCC----------eeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSG----------ATQMRFQPRLGRILAAAI-ENYISILDV 635 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~---~~~~~~~~----------i~~l~fspd~~~Llags~-dg~I~IwDl 635 (761)
++++++..++++....|.|.++-+.. |.+. ..+.+.+. +....+.|+++++++.+- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777889999999965 4332 33333333 788999999999888876 468999999
Q ss_pred CCCeEEEEEc---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 004327 636 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 703 (761)
Q Consensus 636 ~t~~~i~~l~---~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~l~~------~~~~I~sl~fspd 703 (761)
..++....-. .....-..|.|+|++++.++.+ +++|.+|..... .....+..+.. ...+...+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2344568899999999998888 999999999874 23334433322 2345678899999
Q ss_pred CCEEEEEEcCC-cEEEEECCC--CcEE---EEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEc
Q 004327 704 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 760 (761)
Q Consensus 704 g~~L~sgs~dg-~I~IwDl~~--~~~~---~l~~h~~~V~slafspdg~~LaSgs~D-G~I~IW 760 (761)
|++|+++.... .|.+|.+.. +++. ....+......+.|++++++|+++..| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99888876543 788887643 4333 222444558999999999999998855 356665
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=2.6e-09 Score=118.85 Aligned_cols=252 Identities=11% Similarity=0.037 Sum_probs=162.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEE-EEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe-
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 567 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~-v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V- 567 (761)
++..+++++.++.|..||.++++.+....... .+.+ ..+ .+..++.++.++.|+.||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46688888899999999999999887765332 2222 122 345777788899999999998775 33322211111
Q ss_pred ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEE
Q 004327 568 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 568 ----~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-----------i-~~l~fspd~~~Llags~dg~I~ 631 (761)
.+..+. + + .++.+..++.+..+|+++++.+........ + ....+ .++.+++++.+|.++
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence 111222 2 2 455777789999999999987765432111 0 11112 356888888999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEE
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~L~s 709 (761)
.||.++++.+..... . ...... .++..+++++ |+.|+.+|..++ +.+...... ...+.+..+ .+..|++
T Consensus 255 a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEE
Confidence 999999988776652 1 112222 2345566666 999999999887 333333211 112222222 3568999
Q ss_pred EEcCCcEEEEECCCCcEE-EEccCCCCe-eEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 710 IGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~-~l~~h~~~V-~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|+.|.
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999999999988 444444333 333333 3 4588899999998763
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.1e-11 Score=133.95 Aligned_cols=281 Identities=15% Similarity=0.209 Sum_probs=195.7
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC-------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t-------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
-.+..+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 45677889999999998887888999999999999998753 34677889999999999999998888765 8
Q ss_pred CeEEEEecCCCCceeEEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC------CCeeEE
Q 004327 543 RTVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQM 612 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~----~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~------~~i~~l 612 (761)
|-|++||.-.+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++.. .-+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 889999976544321111 112233444431 123445666688999999999998877766632 337899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EECCCCCCceeEEEeec
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSC 690 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I-Wdl~s~~~~~~i~~l~~ 690 (761)
++.+.|++++++-..|.|.+.|.++++.+..+....-....++- |....++... |.++.| |...++ ........
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 99999999999999999999999999999888765555544443 5555666555 888888 876554 22222221
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC-------cEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 691 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 691 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~-------~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
...+.. .+-.-|..+++......+.+|.-... ..+......+..++++.-|-+.-+..|...|.|.+
T Consensus 959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111111 11223455666666667777742111 11223345677888888888877788888898876
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.6e-10 Score=134.14 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=104.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
.+.+|.+.|.++.|+-||+++++.+.|.++++|++++.+... +.-+|+..|+.++|.|+ +|++++.|-++++|+.+.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 578999999999999999999999999999999999988775 66789999999999988 999999999999998775
Q ss_pred CCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004327 553 PDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 596 (761)
Q Consensus 553 ~~~~i~~~~~h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t 596 (761)
.. +..+.+|. ..|..++..++ ..++++++.|+.+++||+..
T Consensus 248 ~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhhhhc
Confidence 33 55778886 46888888776 67888999999999999864
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.1e-10 Score=122.06 Aligned_cols=271 Identities=13% Similarity=0.183 Sum_probs=181.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEEcCCCeEEEEeccC--Ccce-EEEEEcCCCCEEEEEeCCC
Q 004327 478 STSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~-----------Dg~I~VWdl~t~~~~~~l~~h--~~~V-~~v~fspdg~~Lasgs~DG 543 (761)
|.+ |.-+.|||..+||+|-+. ...++|||+.+|...+.|... ...+ .-+.||.|++|+|.-..+
T Consensus 249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 444 888999999999998653 257999999999998887652 2223 346899999999988775
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-C----CCcEEEEECCCCeeeeEEecCCC-eeEEEEecC
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-N----NSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 617 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs-~----Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd 617 (761)
.|.||+...-.. +..-.-.-..|....|+|.+ .+||--. . -..+.+..+.++..++......- -..+.|...
T Consensus 327 sisIyEtpsf~l-ld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 327 SISIYETPSFML-LDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred eEEEEecCceee-ecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence 689998765221 11111123568888999985 4443221 1 13566677776666665543222 234677777
Q ss_pred CCEEEEEEc----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEECC-CCCCc
Q 004327 618 LGRILAAAI----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKG 682 (761)
Q Consensus 618 ~~~Llags~----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~-s~~~~ 682 (761)
|.+|++-.. -..+.||.++....-...-.-...|...+|.|.|..+++-+ ..++.+|.+. +....
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 777665332 12456676665533222223567889999999998777655 3489999988 44444
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
..+..+.. ...+.+.|+|.|.++++++- .|.+.+||+....+. ....| ...+.+.|.|.|+|++|++.-.
T Consensus 485 ~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 485 SLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 55555543 55788999999999887754 568999998753332 33344 3467899999999999998643
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=6.5e-10 Score=123.73 Aligned_cols=276 Identities=14% Similarity=0.201 Sum_probs=193.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC---------------eEEEEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~---------------~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
......|+.|+....|||+|+.||.++|..+.+. ..-.++.+|+..|.-+.|+.+...|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3455899999999999999999999999976532 1124678999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 004327 543 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~-~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
|.|.||-+-.+..+-..+ ...++.|.+++|+.+|.. ++....||.|.+=.++..+....--.......+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999988776533322 234567899999999755 446777888888777643322111111234578899999989
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----EcCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004327 622 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 622 lags~dg~I~IwDl~t~-------~~i~~----l~~h~~~I~sl~~s--------pdg~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
+.+-..|.+.+||.... .+... +......|-.++|. ||...|+++. +|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999997642 12111 22223346677774 4667788888 77877766554332
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
+..+. .+-.+....|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.+|.+
T Consensus 252 Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 22222 246788899999999999998754 4555554333333666777889999998766555544
Q ss_pred CCCeEEE
Q 004327 753 HDKCVKI 759 (761)
Q Consensus 753 ~DG~I~I 759 (761)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4555543
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=3.2e-08 Score=107.60 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=147.3
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEEcCCCeEEEEeccCC-------cceEEEEEcCCCCEEEEEe-C-CCeEEE
Q 004327 487 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSS-A-DRTVRV 547 (761)
Q Consensus 487 fSpdg~~Lasgs~----------Dg~I~VWdl~t~~~~~~l~~h~-------~~V~~v~fspdg~~Lasgs-~-DG~I~V 547 (761)
++|||+.|+++.. +..|.|||+.+++.+..+.... .....++++|||++|++.. . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877765 7899999999999998886422 2334789999999999876 3 689999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ceee-eE---EecC-CCe-eEEEEec-CCC
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-GV---FKCQ-SGA-TQMRFQP-RLG 619 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~-~~---~~~~-~~i-~~l~fsp-d~~ 619 (761)
+|+.+.+. +..+.-. +...-...++. .+++ .|. ||......+.+ ++.. .. +... ..+ ..-.|.+ ++.
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~~-~~~-Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFFM-HCR-DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccEE-Eee-cCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998775 4433321 11121222222 1221 222 44444433322 2211 11 1110 000 1114566 665
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEC
Q 004327 620 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 676 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~-----~~i~~l~~-------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IWdl 676 (761)
++++... |.|++.|+... +....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 5555555 99999996443 22222211 233444599999998888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCcEEEEECCCCcEEE
Q 004327 677 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLT 728 (761)
Q Consensus 677 ~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~ 728 (761)
.+. +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+.
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 887 55655553 56899999999999 777776 46789999999998883
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=8.6e-09 Score=114.69 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 569 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~s 569 (761)
.+..+++++.++.|..+|..+++.+..+.........+.. ++..+++++.++.|..||..+++...+ .. ..+.+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~-~~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR-AK-LSSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee-ec-cCceeec
Confidence 3568888889999999999999998776544432223332 467888889999999999988875332 22 1222322
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCee------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004327 570 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLK 643 (761)
Q Consensus 570 l~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~------~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~ 643 (761)
.-... ++.+ +.+..++.|+.||.++++.+..+....... ...+. ++.++++..++.++.+|.++++.+..
T Consensus 140 ~p~v~-~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 140 PPLVA-NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CCEEE-CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 11111 2344 456678999999999999887776543321 11222 25778888889999999999987765
Q ss_pred EcCCCC----C------EE-EEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 644 LQGHKN----Q------VH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 644 l~~h~~----~------I~-sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
...... . +. +..+ .+.++++++ ++.++.||..++ +.+..... ....... .++..+++++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEEC
Confidence 431100 0 10 1111 234555555 999999999887 33333321 1111222 3466788899
Q ss_pred cCCcEEEEECCCCcEEE-EccC-CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 712 CYETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 712 ~dg~I~IwDl~~~~~~~-l~~h-~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.++.|+.+|..+++.+. .... ...+.+... .+..|++++.||.|++||
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 99999999999998772 2121 122223232 366888899999998875
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=8e-11 Score=131.45 Aligned_cols=278 Identities=18% Similarity=0.307 Sum_probs=193.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcC-CCeEEEEecc-CCcceEEEEEcCC--CCEEEEEeCCCeEEEEecCCC--
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP-- 553 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~-t~~~~~~l~~-h~~~V~~v~fspd--g~~Lasgs~DG~I~VWDl~t~-- 553 (761)
+.+.++.++|.|+-+|.++.-|.. +.|++ .+....-+.. ..-.|-++.|++. -.+-++......-.+|++...
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 457889999999999999877654 44554 3444333321 1124677888874 335555555556778987533
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~-~~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
...-..+.+|...|+.+.|+|....++++|+.|..|..||+++.. .+..+ ........+.|+.....+++.+..+.|.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 333456778999999999999999999999999999999998743 33333 2456778899999888899999999999
Q ss_pred EEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 632 ILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 632 IwDl~t~-~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
+||++.+ .++..+++|...|+.+.|..-- ..+.+++ |++|+.||...... .-........+|..-.+.|-|.-.+
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCceeE
Confidence 9999976 7888899999999999987532 2344444 99999999875422 1112223455666667777654333
Q ss_pred EEEc--CCcEEE---------EECCCCc-EE-EEccCCCCeeEEEEeCCC----------CEEEEEECCCeEEEc
Q 004327 709 VIGC--YETLEL---------WNMTENK-TL-TLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIW 760 (761)
Q Consensus 709 sgs~--dg~I~I---------wDl~~~~-~~-~l~~h~~~V~slafspdg----------~~LaSgs~DG~I~IW 760 (761)
+--. +..|.+ |+..++. .+ ++.+|.+.|..+-|-..+ -.|+|-+.|..+++|
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2221 113333 4433332 23 888999998877774322 179999999999999
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=8.7e-09 Score=115.96 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCE-EEEEeCC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 576 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~-Lasgs~D---G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g 576 (761)
..|.+-|.+..... .+.... .+....|+|||+. ++..+.+ ..|+++|+.++.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 35555566544433 333333 7788999999984 6654443 4688999987653 3344455667778999999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCE
Q 004327 577 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 651 (761)
Q Consensus 577 ~~llasgs~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d-g--~I~IwDl~t~~~i~~l~~h~~~I 651 (761)
..++++.+.+ ..|+++|+.++................|+||++.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 8888777644 46888898887755544443334567899999988887753 3 788999988766433321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEE
Q 004327 652 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 718 (761)
Q Consensus 652 ~sl~~spdg~~Lasgs-D-------g--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~I 718 (761)
...|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999988776 2 2 678888877632 222222 2233578999999888877654 5778
Q ss_pred EECCCCcEEEEccCCCCeeEEEE
Q 004327 719 WNMTENKTLTLSAHDKLVSSLAA 741 (761)
Q Consensus 719 wDl~~~~~~~l~~h~~~V~slaf 741 (761)
+++.......+....+.|...+|
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred EecCCCeeEEeecCCCccCCCCC
Confidence 88887766666555555554433
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.6e-09 Score=119.68 Aligned_cols=188 Identities=19% Similarity=0.303 Sum_probs=150.3
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeEEeec---CCCCeEEEEEc------C-------------CCCcEEEEEeCCCc
Q 004327 531 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 588 (761)
Q Consensus 531 pdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~---h~~~V~sl~fs------p-------------~g~~llasgs~Dg~ 588 (761)
|...++|....||.++|||...+.. ...|.. -.+..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4567899999999999999987664 222221 22344444442 1 23456777888999
Q ss_pred EEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 004327 589 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Las 665 (761)
|.+|++..++....+. +.+.+.++.++.+-..|.+++.|+.+..|+......++.+......+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988877 4567899999999999999999999999999999999999998999999999999998887
Q ss_pred EeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCcEEEEECCC
Q 004327 666 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 723 (761)
Q Consensus 666 gsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd-----g~~L~sgs~-dg~I~IwDl~~ 723 (761)
++ +.|++||+.+. +.+..|.+|.++|.++.|..+ |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 65 67999999987 899999999999999999887 666666544 33566775533
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3.3e-10 Score=115.38 Aligned_cols=198 Identities=21% Similarity=0.271 Sum_probs=154.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE--EeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCcee-
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL- 557 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~--~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i- 557 (761)
..++.|++.+.-++++-.+|.+.+-+........ +++.|.-.++...|+. +.+++++|+.|+.+..||++.++..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4578899989999999999999976665554444 7899999999999976 45689999999999999999554333
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV 635 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl 635 (761)
.....|...|.+|.-+|....++++|+.|-.|++||.++ ++++..-...++|..+.++|.. ..+++++.-+-.+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 336678999999999998889999999999999999994 7888777778999999999953 34566666666777777
Q ss_pred CCC--e---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEECCCC
Q 004327 636 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 679 (761)
Q Consensus 636 ~t~--~---~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~-IWdl~s~ 679 (761)
..+ + .....+.|.+-++.-.|.....+|++|+ |+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777765567888887 77755 7765443
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=4.6e-09 Score=114.00 Aligned_cols=272 Identities=18% Similarity=0.198 Sum_probs=186.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--------------
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 543 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG-------------- 543 (761)
-.-++..++|||.|++|++... ..|.+|....+..+..+. | ..|..+.|+|+++||++-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3446888999999999998765 468999988877665653 4 4599999999999999876543
Q ss_pred -eEEEEecCCCCceeEEeecCCCC--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecC
Q 004327 544 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPR 617 (761)
Q Consensus 544 -~I~VWDl~t~~~~i~~~~~h~~~--V~-sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd 617 (761)
.+.|||+.++.. +..+..-..+ .+ -+.|+-++.+.+-.. ...++|+++...-....+. ...++....|+|.
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 499999998764 6666665554 44 567777754443332 4579999973221111111 1356888899997
Q ss_pred CCE--EEEE-----EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEECCC
Q 004327 618 LGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIGS 678 (761)
Q Consensus 618 ~~~--Llag-----s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs------------Dg~I~IWdl~s 678 (761)
++. |++- ...+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++++++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 443 3332 2367899999987665554332233335688999998876432 23678888863
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC--
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-- 754 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~--dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D-- 754 (761)
. .+.......++|+..+|.|.++.+++++. +-.+.++|++.+ +.+...+..=+.+.|+|.+++++.++-|
T Consensus 265 ~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 265 R----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred c----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCcc
Confidence 2 22222255789999999999988877763 458999999887 5555556666788899999988887765
Q ss_pred -CeEEEcC
Q 004327 755 -KCVKIWK 761 (761)
Q Consensus 755 -G~I~IWd 761 (761)
|.|-|||
T Consensus 339 ~gni~i~~ 346 (561)
T COG5354 339 QGNIEIFD 346 (561)
T ss_pred ccceEEec
Confidence 5677775
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=1.8e-08 Score=108.24 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=190.1
Q ss_pred ccccceecCCCc-eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC-CCeEEEEeccCCc--ceEEEEEcC
Q 004327 456 RVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQ--WITDVRFSP 531 (761)
Q Consensus 456 ~~~r~~d~~~g~-~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~-t~~~~~~l~~h~~--~V~~v~fsp 531 (761)
..+.+|-...+- .|..+..+.+| |+|-.+-. ++..+....||.=.||.++ .|+- ++.|+. .-.+-..+.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD---lrrHTnFtdYY~R~~ns 276 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD---LRRHTNFTDYYPRNANS 276 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCch---hhhcCCchhccccccCC
Confidence 456677765554 78888888888 44433332 3333444556655566443 2222 222332 122334456
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEee-----cC-----CCCeEEEE-EcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFT-----GH-----STTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCA 600 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~-----~h-----~~~V~sl~-fsp~g~~llasgs~Dg~I~vWDl~t~~~~ 600 (761)
||+.|+.. ..|.|.+||.++.......+. .. ..+..-+. |++-...+++..+ .|...+.+...+-.+
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence 88887765 567899999987654222111 00 01111121 4444455666666 677888877655544
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 601 GVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 601 ~~~~~~~~i~~l~fspd~~~Llags~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
.. .....|.-..+..+..-++.|..|| .|-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.+
T Consensus 355 qv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 355 QV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred Ec-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 43 3445688888888888899999998 89999999887544 445678899999999999999998 45899999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg----~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
+. ....-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 433 gn---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 433 GN---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CC---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 73 2222234467799999999999999988777 79999999999886665555667789999999776554
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=3.1e-08 Score=123.04 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEEcCCCeEEEEecc--------------CCcceEEEEEcCCCCEEEEEeC-CCeEE
Q 004327 483 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE--------------HTQWITDVRFSPSLSRLATSSA-DRTVR 546 (761)
Q Consensus 483 ~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~--------------h~~~V~~v~fspdg~~Lasgs~-DG~I~ 546 (761)
..++++++ +.++++-+.++.|++||... ..+..+.+ .-.....|+|.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 56677777788999999864 44433322 1123578999998887666654 56899
Q ss_pred EEecCCCCceeEEeecC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----
Q 004327 547 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 604 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h-----------------~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----- 604 (761)
++|+.++. +.++.+. -..-..++|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987643 3433221 11246799999777888888888999999998765432110
Q ss_pred ----------cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-------------C--------CCCEE
Q 004327 605 ----------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 652 (761)
Q Consensus 605 ----------~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~-------------h--------~~~I~ 652 (761)
.......++|+|+++.|+++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0123457999999986666555 68999999987653221100 0 11235
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--------------CCCceEEEEEeCCCCEEEEEEcCCcEE
Q 004327 653 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 717 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~--------------~~~~I~sl~fspdg~~L~sgs~dg~I~ 717 (761)
+++|+++|.++++.. ++.|++||..++. .. .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777766 8899999997752 22 1111 113567899999998777767788999
Q ss_pred EEECCCCcE
Q 004327 718 LWNMTENKT 726 (761)
Q Consensus 718 IwDl~~~~~ 726 (761)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988765
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=2.2e-08 Score=124.22 Aligned_cols=233 Identities=10% Similarity=0.107 Sum_probs=156.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEecCCCCceeEEeec--C------------CCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 525 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 525 ~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~--h------------~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
..++++++ +.++++-+.++.|.+||... .. +..+.+ . -.....++++++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 55666767788999999864 32 222221 1 12357899998876666555566789
Q ss_pred EEEECCCCeeeeEEec-----------------CCCeeEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCC----
Q 004327 590 RYWSINNGSCAGVFKC-----------------QSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGH---- 647 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~-----------------~~~i~~l~fspd~~~Lla-gs~dg~I~IwDl~t~~~i~~l~~h---- 647 (761)
+++|+.++........ -.....++|+|+++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9999987653322110 113467999996555544 4557899999998875432 1111
Q ss_pred -----------CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEE-----------Eeec--------CCCce
Q 004327 648 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 695 (761)
Q Consensus 648 -----------~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~-----------~l~~--------~~~~I 695 (761)
-.....|+|+|++.+|+++. ++.|++||+.++.. ..+. .+.. .-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12346799999998666555 77999999986532 1110 0000 01124
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccC--------------CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h--------------~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..++|+++|..+++-..++.|++||..++...++.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998877654332 12578899999999888888999999996
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.3e-08 Score=112.64 Aligned_cols=201 Identities=10% Similarity=0.045 Sum_probs=135.6
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc-EEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 619 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~-llasgs~--Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~ 619 (761)
..|.+-|.+... .+.+... +.+....|+|+++. ++++... +..|+++|+.+++........+......|+||++
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 355555655432 3333333 37888999999986 4433332 4579999999888776666556667789999998
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCceeEEEeecCC
Q 004327 620 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTG 692 (761)
Q Consensus 620 ~Llags~---dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg----~I~IWdl~s~~~~~~i~~l~~~~ 692 (761)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..+|. .|+++|+.++...... .. .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~--g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FH--G 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cC--C
Confidence 8876544 357999999887643 344344334566899999988877733 7888898876331111 11 1
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 693 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~d---------g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
.. ...|+|||++|+..... ..|+++|+.++....+... .......|+|||+.|+..+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999888764 2688889988877655543 234468999999977766643
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=6.6e-08 Score=118.08 Aligned_cols=282 Identities=15% Similarity=0.215 Sum_probs=185.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEE----EcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC-
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 551 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VW----dl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~- 551 (761)
...+.|.++.|-+|...|+.+..+|.|.++ +..+.. +.....-...|.+++||||...|+..+.+++|.+.+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345779999999999999999999999999 544432 22223345689999999999999999999988876422
Q ss_pred ---------C---CC-cee--------EEeec------------------------CCCCeEEEEEcCCCCcEEEEEe--
Q 004327 552 ---------N---PD-YSL--------RTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 584 (761)
Q Consensus 552 ---------t---~~-~~i--------~~~~~------------------------h~~~V~sl~fsp~g~~llasgs-- 584 (761)
. +. ..+ ..|.| +...-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 000 00100 2334567889999877666543
Q ss_pred C---CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCC---CeEEEEEcCCCCCEEEE
Q 004327 585 N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVET---QVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 585 ~---Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~---dg~I~IwDl~t---~~~i~~l~~h~~~I~sl 654 (761)
. -..|+||+-+ |....+... .+--.+++|.|.|+.|++.-. ...|.+|+-+. ++....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2579999976 655444332 223467999999998888775 24566666443 22222222355689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCcEEEEEC----CCC----
Q 004327 655 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 724 (761)
Q Consensus 655 ~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl----~~~---- 724 (761)
.|++|+.+|+....+.|.+|...+- ......++... ...+..+.|+|...+ |.+.+.++.+.++++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999988666999998653 22333444432 233455889986643 555555565544432 211
Q ss_pred ------------cEE----------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 725 ------------KTL----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 725 ------------~~~----------------~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..+ ........|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 000 0112456799999999998899999999998874
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.7e-08 Score=110.42 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=183.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC-----------CCeEEEEecC
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 551 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-----------DG~I~VWDl~ 551 (761)
+-+.|||-|.||++--. .-|.+|--++...+..|. |. .|.-+.|||+.+||+|-+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 56899999999999865 458899877777777773 65 4899999999999998653 2579999999
Q ss_pred CCCceeEEeec--CCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC
Q 004327 552 NPDYSLRTFTG--HSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 552 t~~~~i~~~~~--h~~~V~-sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~d 627 (761)
++.. .+.|.. ....++ -+.|+.|++++.... ...|.||+..+..++..-. ...+|....|+|.++.|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9875 555544 222233 357898876554433 3579999887643332111 23678899999998877765542
Q ss_pred -----CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCceeEEEeecC
Q 004327 628 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 628 -----g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg-----------~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
..+.+..+.++..+++..-|.-.-..+.|-.+|.||+.--|. .+.|+.++.... .+..+ ..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~v-el 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVV-EL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceee-ec
Confidence 367788888887777665555444567888899998865422 345555554322 12222 23
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC---cEEEEECCC-CcEEE--EccCCCCeeEEEEeCCCCEEEEEEC---CCeEEEcC
Q 004327 692 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLT--LSAHDKLVSSLAASTVNGMVASASH---DKCVKIWK 761 (761)
Q Consensus 692 ~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~-~~~~~--l~~h~~~V~slafspdg~~LaSgs~---DG~I~IWd 761 (761)
...|...+|.|.|+.+++.+... ++.+|.+++ ..... ..-.....+.+.|+|.|++++.+.. .|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56788899999998888776644 788998873 22221 1122356788999999999887753 56666664
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.5e-09 Score=110.98 Aligned_cols=239 Identities=17% Similarity=0.335 Sum_probs=163.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC-----eEEEEeccCC------------cceEEEEEcCCC--CEEEEE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHT------------QWITDVRFSPSL--SRLATS 539 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-----~~~~~l~~h~------------~~V~~v~fspdg--~~Lasg 539 (761)
.+.|+++.|...|.||++|...|.|.+|.-+.. +....+.+|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 456999999999999999999999999965432 2223344443 457888887754 357777
Q ss_pred eCCCeEEEEecCCCCc-----------------------------------------eeEEe-ecCCCCeEEEEEcCCCC
Q 004327 540 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~-----------------------------------------~i~~~-~~h~~~V~sl~fsp~g~ 577 (761)
+.|++|++|.+..... +.+.+ ..|...|.++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999998764310 01112 35777788999998866
Q ss_pred cEEEEEeCCCcEEEEECCCCe-eeeEEe--c------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe------EE
Q 004327 578 DLLCSCDNNSEIRYWSINNGS-CAGVFK--C------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------CR 641 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~-~~~~~~--~------~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~------~i 641 (761)
.++ ++ +|-.|.+|++..-. +..... . ..-|++..|+|.. +.+...+..|.|++.|++... .+
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 54 47889999986422 222221 1 1237888999964 456677788999999998321 11
Q ss_pred EE----------EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------Cce---E
Q 004327 642 LK----------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 696 (761)
Q Consensus 642 ~~----------l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~------------~~I---~ 696 (761)
.. +.+-...|..+.|+++|+||++-+--+|+|||++... .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 1122346788999999999998888899999998754 4555543221 122 3
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 697 SCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 697 sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.+.|+.|.+.+++|+..+..-||-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5778888888999988877777753
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=4.5e-09 Score=109.11 Aligned_cols=234 Identities=16% Similarity=0.283 Sum_probs=161.6
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCC------------CCCeEEEEEcCCCC--EEE
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK--LLA 495 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H------------~~~V~~lafSpdg~--~La 495 (761)
..++++|..++.|.+|-...... + .+.....+..| ..+|..+.|.+++. .++
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred cceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 36789999999999883222111 1 22222333333 24688999998665 577
Q ss_pred EEECCCeEEEEEcCCCeE-----------------------------------EEEe-ccCCcceEEEEEcCCCCEEEEE
Q 004327 496 TGGHDKKAVLWCTESFTV-----------------------------------KSTL-EEHTQWITDVRFSPSLSRLATS 539 (761)
Q Consensus 496 sgs~Dg~I~VWdl~t~~~-----------------------------------~~~l-~~h~~~V~~v~fspdg~~Lasg 539 (761)
..+.|.+|++|.+..... .+.+ ..|+-.|.+|.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 778899999997642110 0011 3688889999999999888887
Q ss_pred eCCCeEEEEecCCCCcee--EEeecC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----eEEe----
Q 004327 540 SADRTVRVWDTENPDYSL--RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK---- 604 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~~i--~~~~~h-----~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~----~~~~---- 604 (761)
.|=.|.+|+++-..... .-++.+ +.-|++..|+|....+|+-.+..|+|++.|++...+- +.+.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 57789999987544332 233333 3458899999998888888888999999999843211 1111
Q ss_pred ---------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCC------------C---EEEEEEcCC
Q 004327 605 ---------CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------Q---VHSVCWNTS 659 (761)
Q Consensus 605 ---------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~-t~~~i~~l~~h~~------------~---I~sl~~spd 659 (761)
.-..|..+.|++.|+++++-. --+|++||+. ..+++.++.-|.. . -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 113478899999988777543 3789999994 5566666655531 2 246889999
Q ss_pred CCEEEEEe-CCeEEEEECCCC
Q 004327 660 GEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 660 g~~Lasgs-Dg~I~IWdl~s~ 679 (761)
+.++++|+ .+.+++|++..+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 99999999 889999997654
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=3.7e-10 Score=136.23 Aligned_cols=189 Identities=15% Similarity=0.298 Sum_probs=155.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 44555678889889988899999999999999998888776664 233789999999999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCC--C-eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINN--G-SCAGVFKCQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs---~Dg~I~vWDl~t--~-~~~~~~~~~~~i~~l~fspd~~~Llags~d 627 (761)
..+......|.....++.|.. .++++++ .++.+.+||..- . .++. .-+.++++++++.|....|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 345788889999999999984 4565654 578999999753 2 2333 4466789999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
|.|++||++..+.++.+.. ++ ...++++++ .|.|+||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999998877766653 44 667888888 999999999765
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=6.4e-10 Score=134.25 Aligned_cols=210 Identities=16% Similarity=0.235 Sum_probs=165.7
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--CCCee
Q 004327 533 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT 610 (761)
Q Consensus 533 g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~--~~~i~ 610 (761)
+..+.....++...-|..+... ...+.+-..|.++.-||....++ +|+.||.|++|....+..+..++. ...++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3444445556666666655433 23333556788888899866555 999999999999998888877764 35688
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCceeEE
Q 004327 611 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 611 ~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~~~i~ 686 (761)
.+.|+..|+.+.++..||.+.+|.+. .++....+.|+.....+.|-. ..+++.+ ++.+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 89999999999999999999999988 677778888999888888876 4555544 5599999987655556666
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 687 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+|...++++++.|....|++|+.+|.|++||++..+.. ++.. ++ ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877665 2222 44 567999999999999995
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=5.5e-07 Score=94.11 Aligned_cols=218 Identities=6% Similarity=0.007 Sum_probs=143.7
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004327 525 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 603 (761)
Q Consensus 525 ~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~ 603 (761)
.+++|.+ ++.++++-...+.|+.|+..+... ..+.... ...+++...++.+++ +.. +.+.++|+.+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEe
Confidence 3678988 666777766789999999987653 2222222 677788733345554 443 45666799988766555
Q ss_pred ec------CCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--
Q 004327 604 KC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 667 (761)
Q Consensus 604 ~~------~~~i~~l~fspd~~~Llags~d--------g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-- 667 (761)
.. ....+.+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 53 1236789999998866655432 568888888 55444333 345678999999999887665
Q ss_pred CCeEEEEECCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEe
Q 004327 668 DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 742 (761)
Q Consensus 668 Dg~I~IWdl~s~~~-~---~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafs 742 (761)
.+.|..|++..... . ..+..+....+....+++..+|+.+++....+.|.++|.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 77899999864322 1 1222233333357889999999977777778899999988 6666 343334589999995
Q ss_pred -CCCCEEEEE
Q 004327 743 -TVNGMVASA 751 (761)
Q Consensus 743 -pdg~~LaSg 751 (761)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 665655443
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=1e-06 Score=91.97 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=146.6
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEc-CCCCEEEEEeCCCeEEEEecCCCCceeE-Ee
Q 004327 484 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-TF 560 (761)
Q Consensus 484 ~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fs-pdg~~Lasgs~DG~I~VWDl~t~~~~i~-~~ 560 (761)
+++|.+ ++.++++--..+.|..|+..++...... ... ...+++. ++ ..|+.+..++ +.++|+.+++.... ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 6777777767899999999887665322 222 6677777 56 4555555554 56669887653221 11
Q ss_pred e--c-CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCC
Q 004327 561 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 628 (761)
Q Consensus 561 ~--~-h~~~V~sl~fsp~g~~llasgs~D--------g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags-~dg 628 (761)
. . .....+++++.++|+ +.++.... |.|+.++.. ++.......-.....++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 345688999999986 55454432 568888888 66666666556788999999999887655 468
Q ss_pred eEEEEECCC--C-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 629 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 629 ~I~IwDl~t--~-----~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
.|..|++.. . +.+..+....+..-.++++.+|+++++.. .+.|.+++.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 12222333333478999999999887776 8899999987 4 556666655568999999
Q ss_pred e-CCCCEEEEEEc
Q 004327 701 H-PTFPSLLVIGC 712 (761)
Q Consensus 701 s-pdg~~L~sgs~ 712 (761)
. ++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 67777777653
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=6.5e-08 Score=109.34 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=154.9
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCC------------CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC---
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 531 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpd------------g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp--- 531 (761)
..+..+..+.-|...|+.+.|.|- .-+||++...|.|.|||...+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 345667788899999999999872 12578888889999999999999999999999999999977
Q ss_pred CC-CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeEE
Q 004327 532 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 603 (761)
Q Consensus 532 dg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-------~~~~~~~ 603 (761)
+. ..|++-....+|.+|+..++.. +..+........|+.+.|-+...|+.-+..|.|.+-+.-. ++....-
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4677777788999999999875 4455545566778999987666666666677777665431 2222111
Q ss_pred ecCC--------------------C------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 004327 604 KCQS--------------------G------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 657 (761)
Q Consensus 604 ~~~~--------------------~------i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s 657 (761)
..+. . ...++|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 1100 0 1235778887888888889999999999888887776666666777777
Q ss_pred CCC--CEEEEEe-CCeEEEEECCC
Q 004327 658 TSG--EYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 658 pdg--~~Lasgs-Dg~I~IWdl~s 678 (761)
|++ +.|++.. ||.+.+|-.+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 765 4677666 99888886543
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=5.5e-09 Score=108.59 Aligned_cols=245 Identities=13% Similarity=0.204 Sum_probs=174.5
Q ss_pred eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC-CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 512 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 512 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t-~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
.++..+++|.+.|++...-|...-+++.+.|.+++||--.+ +.+-...+..-..+++++.+.++. ..|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEE
Confidence 34567789999999999999888899999999999996443 333223333445788999999885 5555777889998
Q ss_pred EEECCC----CeeeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 004327 591 YWSINN----GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 591 vWDl~t----~~~~~~~-~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Las 665 (761)
-+.+.. ....+.+ .+...+..+.|+-...++++.+.|..+.-.-.+.+..+..+. .....+++.+.-. +.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEe
Confidence 887643 2222222 244668888888888888888888777655555443322111 0011111111111 3344
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEe
Q 004327 666 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAS 742 (761)
Q Consensus 666 gs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafs 742 (761)
|. .+.|.+-.+... ....+..+.+|.+.+.+++|.+....++++.+|..|.+||+-.++-+ .+.+|.+.|..+...
T Consensus 171 Gd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 44 555555544332 22678889999999999999999999999999999999999665544 778999999999988
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 004327 743 TVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 743 pdg~~LaSgs~DG~I~IWd 761 (761)
+.-+.+++++.||.|.+||
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 8889999999999999996
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=2.5e-08 Score=101.90 Aligned_cols=240 Identities=12% Similarity=0.101 Sum_probs=159.3
Q ss_pred CCeEEEEEcC---CCC-EEEEEECCCeEEEEEcCCCeEEEEeccCC------cceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 480 SKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 480 ~~V~~lafSp---dg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~------~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
..++.+.|.- +|. .|+-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3466666653 455 56677778999999765544444443211 1245788999899999999999998555
Q ss_pred cCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--EecCCCeeEEEEec-CCCEEEEE
Q 004327 550 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILAA 624 (761)
Q Consensus 550 l~t~~~-~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-t~~~~~~--~~~~~~i~~l~fsp-d~~~Llag 624 (761)
...... .+.+++.|..+++.+.|+....+++++|++|+.+..||++ .++.+.. -.+..+|.++.-+| ...++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 443332 2347889999999999998888999999999999999999 3443332 23557788888776 45678899
Q ss_pred EcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEECCCCCCc--eeEEEeecCCCceEEEE
Q 004327 625 AIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSCV 699 (761)
Q Consensus 625 s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~~spdg--~~LasgsDg~I~IWdl~s~~~~--~~i~~l~~~~~~I~sl~ 699 (761)
+.|..|++||.++ ++++..-. -.+.|..++++|.- .+|+++--+-++|.++...... ........|.+-+..-.
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 9999999999995 56665443 44789999999854 3444444444666666553221 12333444554444455
Q ss_pred EeCCCCEEEEEEc-CCcEE-EEE
Q 004327 700 FHPTFPSLLVIGC-YETLE-LWN 720 (761)
Q Consensus 700 fspdg~~L~sgs~-dg~I~-IwD 720 (761)
|.....+|++++. |..++ +|-
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccceeeeeeccccceeeeee
Confidence 5443345666543 33433 553
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=9.8e-08 Score=106.80 Aligned_cols=308 Identities=11% Similarity=0.158 Sum_probs=194.1
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
+.+|++|+.|+-+++.--..+.......+ ......+..-.++.||++.|.-+.|+.....|-+...+|.|.||-+-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 36999999999998873222221111111 11223345567899999999999999999999999999999999877
Q ss_pred CCeEEEEe--ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce-------------------------------
Q 004327 510 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------- 556 (761)
Q Consensus 510 t~~~~~~l--~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~------------------------------- 556 (761)
.+.-.... ....+.|.+++|+.||..|+....||.|.|=.++.+..-
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 65433222 234567899999999999988888887765444321100
Q ss_pred -----------------eE---EeecCCCCeEEEEEc-------CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe
Q 004327 557 -----------------LR---TFTGHSTTVMSLDFH-------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 609 (761)
Q Consensus 557 -----------------i~---~~~~h~~~V~sl~fs-------p~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i 609 (761)
+. .+......|..+.|. |-..-.|+.|..+|.+.+..-.+......+...-.+
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKI 261 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEe
Confidence 00 011111224455553 112345667777888777765554444455555668
Q ss_pred eEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 004327 610 TQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 680 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~ 680 (761)
....|+++|..|++++.+. .|.+|. .-|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++...
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEY 340 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccc
Confidence 8899999999999988632 344443 346677788878889999999999989998889999999887542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
....+. . .+.|.-.+.- ...-.|.+||..+++.. .... ...+++|..+--.|++-..||.|.
T Consensus 341 kWgy~e------~---TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~---~~~~~a~~~ehCvL~~~~d~~~i~ 403 (1189)
T KOG2041|consen 341 KWGYIE------E---TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVT---HFENMAFYREHCVLINRQDDGVIP 403 (1189)
T ss_pred eEEEee------e---EEEEEEccCC----CcceEEEEEecccChhhhhhhc---ceeehheecccEEEEeccccCCCc
Confidence 211111 0 1111100000 00115888998877644 2222 234566665555666666666543
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=1.7e-07 Score=100.99 Aligned_cols=274 Identities=14% Similarity=0.108 Sum_probs=168.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg-~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
+|.+.|.-..+..+++-++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++.....|.++|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 7888899999999999999999999 99999998876554 445667899999999999999999989999999999874
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg----~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
...-....+-|+.++|||+++ ++|-+--+| .|+++|+..++..........-.+-+|.|++++|..-+...
T Consensus 436 -~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs--- 510 (668)
T COG4946 436 -RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS--- 510 (668)
T ss_pred -eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc---
Confidence 223333457799999999975 444444344 69999999988887776666677889999999887766411
Q ss_pred EEECCCCeEEEE--EcCCCCCEEEEE----EcCCCCEEEEEe--CCeEEEEECCCCCCcee-----EEEeec-CCCceEE
Q 004327 632 ILDVETQVCRLK--LQGHKNQVHSVC----WNTSGEYLASVS--DELVRVWSIGSGSKGEC-----IHELSC-TGNKFHS 697 (761)
Q Consensus 632 IwDl~t~~~i~~--l~~h~~~I~sl~----~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~-----i~~l~~-~~~~I~s 697 (761)
.|..+.+.+.. +..+..+...+- .+|-....-... ++.+-+=++.....+.. ...+.+ ..+.|.-
T Consensus 511 -LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~kill 589 (668)
T COG4946 511 -LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILL 589 (668)
T ss_pred -cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEE
Confidence 11111111111 111111111100 111111111111 22222222211100000 000111 1111222
Q ss_pred EEEeCCCC---EEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 698 CVFHPTFP---SLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 698 l~fspdg~---~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..+--.|. ++...-..|.|.+||+++.+... -...++++..|+|++.|.. -.||.++++|
T Consensus 590 fs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e---~k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 590 FSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE---YKDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred EEeeccchhhhhhcCCCccceEEEEecchhhHHH---HhcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 22211221 11223345688899988776443 3456899999999998887 7899999875
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2e-08 Score=113.32 Aligned_cols=236 Identities=14% Similarity=0.203 Sum_probs=173.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC------C------CEEEEEeCCCeEEEEe
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS------L------SRLATSSADRTVRVWD 549 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd------g------~~Lasgs~DG~I~VWD 549 (761)
-.++.|+|.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|+|.|. . -+||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 6678999877 8888874 58899999999999999999999999999872 1 2577788889999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCC---CCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEec-CCCEEEEE
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRILAA 624 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~---g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fsp-d~~~Llag 624 (761)
...... +..+..|..+|..++|.+. .+++++.-....+|.+|+..+|+....+..... ..|+.+.| |..++.+.
T Consensus 96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 987654 6677778899999999764 345666666678999999999998887775444 46688888 55667777
Q ss_pred EcCCeEEEEECCC-------CeEEEEEcCCCC-------------------------CEEEEEEcCCCCEEEEE-eCCeE
Q 004327 625 AIENYISILDVET-------QVCRLKLQGHKN-------------------------QVHSVCWNTSGEYLASV-SDELV 671 (761)
Q Consensus 625 s~dg~I~IwDl~t-------~~~i~~l~~h~~-------------------------~I~sl~~spdg~~Lasg-sDg~I 671 (761)
+..|.+.+.+.-. ++.+..-..|.+ ..-.++|+|.-+.++.. ....+
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 7788877776431 222222222322 01124567765544444 48889
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCcEEEEECCC
Q 004327 672 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 672 ~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg--~~L~sgs~dg~I~IwDl~~ 723 (761)
.|+|++-. .++.......+.+.-+.|-|+. ..|++.-.||.+.||-.+.
T Consensus 255 lv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 255 LVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 99999754 6677666666666666776665 6799999999999997655
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.99 E-value=3e-07 Score=94.89 Aligned_cols=216 Identities=12% Similarity=0.016 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCeEEEEeccC--CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 500 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h--~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
+|.|..||..+++.+.....- .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+....... ++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~-~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD-GG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE-TT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec-cc
Confidence 689999999999999887531 1222211 223567788889999999999998875 333332 22211111222 23
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEE-ecCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC--
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 650 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~----~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~-- 650 (761)
.++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++++.+.........
T Consensus 78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 444 4556789999999999998884 3221 1223333334788999999999999999999998888664422
Q ss_pred --------EEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 651 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 651 --------I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
+.+-....++ .++.+. ++.+..+|+.++ ..+.... ...+.. ....++..|++++.++.|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1222233345 555555 775444499887 3333222 222222 24577788888889999999999
Q ss_pred CCCcEE
Q 004327 722 TENKTL 727 (761)
Q Consensus 722 ~~~~~~ 727 (761)
++++.+
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999876
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=5.8e-08 Score=98.07 Aligned_cols=249 Identities=9% Similarity=0.012 Sum_probs=164.3
Q ss_pred CCeEEEEEcCCCe-EEEEeccCCcceEEEEEcC-----CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 004327 500 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 573 (761)
Q Consensus 500 Dg~I~VWdl~t~~-~~~~l~~h~~~V~~v~fsp-----dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fs 573 (761)
...|-+|++.+.. .+..+. ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.=.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 3456777765432 111111 3445554 445899999999999999997765555555555544332211
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EEcCCCC
Q 004327 574 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-V-CRL-KLQGHKN 649 (761)
Q Consensus 574 p~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-~-~i~-~l~~h~~ 649 (761)
-+...-+..++.|.+++++++.-+......... -....+.+++++.++++.+....|..|.+... + .+. ......+
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 122233446778888888888754333222221 23788999999999999999999999988753 2 222 2233444
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcee--EEEeecCCCceEEEEEeCCC--CEEEEEEcCCcEEEEECCCC
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--IHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~--i~~l~~~~~~I~sl~fspdg--~~L~sgs~dg~I~IwDl~~~ 724 (761)
.-.+..|+.....+|++. ||++.|||++....... -..-..|.+.+..|.|++.| ..|+..-.-+.+.+.|++++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 557889999999999999 99999999987533221 12234578899999999877 34666666679999999988
Q ss_pred cEE--------EEccCCC-CeeEEEEeCCCCEEEEEECC
Q 004327 725 KTL--------TLSAHDK-LVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 725 ~~~--------~l~~h~~-~V~slafspdg~~LaSgs~D 754 (761)
+-. .+..|.. .|..-.|+.++..+.+.+.+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 754 1223333 37888888877665555443
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=3.8e-09 Score=118.38 Aligned_cols=218 Identities=19% Similarity=0.280 Sum_probs=155.7
Q ss_pred eecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCCCe-EEEEeccCCcceEEEEEcCCCCEEEE
Q 004327 461 AEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLAT 538 (761)
Q Consensus 461 ~d~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~-~~~~l~~h~~~V~~v~fspdg~~Las 538 (761)
|.......-.....+.+|...|+.+.|++. ...||+++.|..|..||+.+.. .+..+..-......|+|+.....+.+
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 333333333344567899999999999994 4579999999999999998754 44445444456778999886556666
Q ss_pred EeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEecCCCeeEEEEec
Q 004327 539 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQP 616 (761)
Q Consensus 539 gs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--~~~~~~~~~~i~~l~fsp 616 (761)
.+....|.|||++.+..++..+++|...|+.++|.......+.+++.|++|++||..+.. ..+......++..-+|.|
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 677788999999999989999999999999999987666677799999999999987543 334444555666666666
Q ss_pred CCCEEEEEEc--CCeEEEE---------ECCC-CeEEEEEcCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEE
Q 004327 617 RLGRILAAAI--ENYISIL---------DVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRV 673 (761)
Q Consensus 617 d~~~Llags~--dg~I~Iw---------Dl~t-~~~i~~l~~h~~~I~sl~~spdg----------~~Lasgs-Dg~I~I 673 (761)
-+.-.++--. ++.+.++ +..+ ..+++.|.+|.+.|...-|-..+ --|++-+ |..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 4433222111 2233333 3333 36789999999988776664322 2467777 999999
Q ss_pred EECCC
Q 004327 674 WSIGS 678 (761)
Q Consensus 674 Wdl~s 678 (761)
|-+.+
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 98864
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=2.9e-07 Score=103.20 Aligned_cols=256 Identities=11% Similarity=0.016 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCC----
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST---- 565 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~---- 565 (761)
++..++.++.++.+..+|.++++.+............... .+..+++++.++.|..+|..+++.....-.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3456777888999999999999998877544321111222 2456777888999999999988753332211100
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEEC
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 635 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~--------i~~l~fsp--d~~~Llags~dg~I~IwDl 635 (761)
...+.... ++. ++.+..++.+..+|..+++.+..+..... ...+..+| .++.+++++.+|.++.+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 00111111 123 44566789999999999887765542211 00111122 3567888888999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 004327 636 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 636 ~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~L~sgs~d 713 (761)
.+++.+...... ....+.. ++..|+.++ ++.+..+|..++. .+...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 344555555 9999999998873 33222211 111222222 24568999999
Q ss_pred CcEEEEECCCCcEE-EEccCCCCee-EEEEeCCCCEEEEEECCCeEEEcC
Q 004327 714 ETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 714 g~I~IwDl~~~~~~-~l~~h~~~V~-slafspdg~~LaSgs~DG~I~IWd 761 (761)
|.|+++|..+++.+ ...-....+. ...+. +..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 99999999999988 3322222232 22332 45788889999998764
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=2.1e-08 Score=106.46 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=110.5
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 426 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 426 l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
..+..++++.+..+....+|....... +..+.....+......|+.+..+........++....+.+
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 345556777766666654553222111 1122222333333333444444433323333445566667
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
|....+..... -+|-..+++|+|+||+.+|+++..|..|+|-.+......-..+.||+..|..++..++ +.|++++.
T Consensus 137 ~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 137 LSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred ecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence 76666555444 4899999999999999999999999999998887655444566789999999999876 55779999
Q ss_pred CCcEEEEECCCCeeeeEEec
Q 004327 586 NSEIRYWSINNGSCAGVFKC 605 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~~ 605 (761)
|++|++||+.+++++..+..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877654
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=7.2e-09 Score=112.59 Aligned_cols=207 Identities=14% Similarity=0.259 Sum_probs=147.5
Q ss_pred EEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 514 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 514 ~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
+..+.+|...|..++-..+.+-+++++.|++|++|.++... .+..++..|+.+|.++.|..+. ..+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cC
Confidence 35678999999998887788889999999999999987432 2456888999999999998774 455565 88
Q ss_pred cEEEEECCCCeeeeEEe---cCCCeeEEEEec--CCCEEEEE-EcCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEE
Q 004327 588 EIRYWSINNGSCAGVFK---CQSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 656 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~---~~~~i~~l~fsp--d~~~Llag-s~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~~ 656 (761)
.|.+||.--++.+.... .++.+..+..-+ +...++++ +.+.+|+++|.+..+-+..++ +.+..+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776654222 223333333333 33445555 458899999999876555544 34456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE-EECCCCcEE
Q 004327 657 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL 727 (761)
Q Consensus 657 spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I-wDl~~~~~~ 727 (761)
.+.|++++++- +|+|.+.|.+++ ..+..+...+.....++ .|....++....|.++.+ |..-++...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 99999999887 999999999998 55555444333333322 244556777777888888 876665443
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-08 Score=107.13 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=176.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC---CeEEEEeccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 552 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t---~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl~t 552 (761)
-|.+.|+.|..+. .+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3777788776654 57999999999999997543 2445666788899999999999999999877 99999999987
Q ss_pred CCce-eEEeecCCCCeEEEEEcCCC-C-cEEEEEeCCCcEEEEECCCCeeeeE-E--ecCCCeeEEEEecCCCEEEEEEc
Q 004327 553 PDYS-LRTFTGHSTTVMSLDFHPSK-E-DLLCSCDNNSEIRYWSINNGSCAGV-F--KCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 553 ~~~~-i~~~~~h~~~V~sl~fsp~g-~-~llasgs~Dg~I~vWDl~t~~~~~~-~--~~~~~i~~l~fspd~~~Llags~ 626 (761)
-... ...+....+.+..+ .++.. . .+.++.-.++.|.++|-....+... + .+..+|.++.+.+.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 5532 11222222222221 12211 1 3444455789999999876543322 2 25578999999999999999999
Q ss_pred CCeEEEEECCC------CeEEEE---------EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE---
Q 004327 627 ENYISILDVET------QVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--- 687 (761)
Q Consensus 627 dg~I~IwDl~t------~~~i~~---------l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~--- 687 (761)
.|.|..|..+. .+.... +........++.|+|++..+.+-+ |..|++++++++.....+.+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998873 111111 222345678999999999999888 88999999988743322221
Q ss_pred --------------------------eecCC-CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccC
Q 004327 688 --------------------------LSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 732 (761)
Q Consensus 688 --------------------------l~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h 732 (761)
+..++ ..-..++|...+++|+.++--| |+++++.++.++++.+.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 11111 2345678999999999887765 88999999888755543
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.6e-09 Score=121.36 Aligned_cols=265 Identities=14% Similarity=0.181 Sum_probs=179.8
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--eE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 545 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG--~I 545 (761)
.|+.+++++.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.|.=+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4677888999999999999999999999999999999999999999999999999999999999999877665433 46
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCE
Q 004327 546 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 620 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-----~~~i~~l~fspd~~~ 620 (761)
.+|++.+......+|. .-.++.|+..... -+.|.......+||+.++..+.++-. .-.-.+..|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7999876444444444 3456778755222 22333345688999999876655321 122367889998776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
++ .|| .+||++....++.|...+..+ .-.|+|.|.-++.-+ .|||+++. +.++.... -.-..+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 65 233 579999888777776544222 346899998877643 68999886 33333221 11234566
Q ss_pred eCCCCEEEEEEc-------------C----CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 701 HPTFPSLLVIGC-------------Y----ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 701 spdg~~L~sgs~-------------d----g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
...|..++..-. + ...+-||..+.+.+........|..++-++...+|+.--
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 666664433220 0 023444444444454444556677777777776666543
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=9.3e-07 Score=99.11 Aligned_cols=255 Identities=8% Similarity=0.048 Sum_probs=153.7
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCc----------ceE-EEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~----------~V~-~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+..+++++.++.|.-+|.++++.+........ .+. .+.. ++..++.++.+|.++.+|.++++...+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence 55777788889999999999998877643220 000 1111 356778888999999999998875333
Q ss_pred eecCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEE--EEec--CCCEEEEEEcCCeEEEEE
Q 004327 560 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 634 (761)
Q Consensus 560 ~~~h~~~V~s-l~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l--~fsp--d~~~Llags~dg~I~IwD 634 (761)
+... +.+.+ ..+. + +. ++.+..++.|+.+|..+|+.+..+....+...+ ..+| .++.+++++.+|.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-GL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-CE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 2222 22222 1222 2 33 445667899999999999998877643221100 0111 235678888899999999
Q ss_pred CCCCeEEEEEcCCCC-------CEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 635 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 635 l~t~~~i~~l~~h~~-------~I~sl~~sp--dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
..+++.+........ ....+..+| .+..+++++ ++.+..+|..+++ .+..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987765432110 011111122 233444455 9999999998873 3322221 1111122 245
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEE-EccC-CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 705 PSLLVIGCYETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~~-l~~h-~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..|++++.++.|+.+|..+++.+. .... .....+..+. +.+|+.++.||.|+++|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 678899999999999999998762 2111 1112222222 45677788888887654
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=4.4e-06 Score=88.30 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=161.6
Q ss_pred eEEEEEcC-CCCEEEEEECCC-eEEEEEcCCCeEEEEeccCCcceE--EEEEcCCCCEEEEEeC-----CCeEEEEecCC
Q 004327 482 VESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 552 (761)
Q Consensus 482 V~~lafSp-dg~~Lasgs~Dg-~I~VWdl~t~~~~~~l~~h~~~V~--~v~fspdg~~Lasgs~-----DG~I~VWDl~t 552 (761)
...++.+| ++..++.+-.-| ...+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 556677777666 467899999988877754333322 3689999999998754 48999999995
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC--CEEEEEEcCCeE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIENYI 630 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~--~~Llags~dg~I 630 (761)
.-..+..+..|.-.-..+.+.|+++.+++.-+ -|.- +|+. ..|=..+.+-.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG---GI~T-----------------------hpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANG---GIET-----------------------HPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcC---CCcc-----------------------CcccCceecChhhcCCce
Confidence 55556777777767788899999877765432 2210 1111 112233445566
Q ss_pred EEEECCCCeEEEE--E--cCCCCCEEEEEEcCCCCEEEEEe-CC-------eEEEEECCCCCCceeEE----EeecCCCc
Q 004327 631 SILDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNK 694 (761)
Q Consensus 631 ~IwDl~t~~~i~~--l--~~h~~~I~sl~~spdg~~Lasgs-Dg-------~I~IWdl~s~~~~~~i~----~l~~~~~~ 694 (761)
.+.|..+++.+.. + ..|...|..+++.++|..++..- .+ .|.+++.... ...+. ......+.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCc
Confidence 6777778876665 3 23777899999999998877665 32 3555554331 11111 11234578
Q ss_pred eEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 695 FHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
+-+|+++.++.++++++-.+ .+.+||..+++.+....- ..+..++..+++ +++|.+.-
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 99999999999887777655 899999999998854322 345666666655 66665543
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=1.6e-06 Score=89.53 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=134.8
Q ss_pred CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 004327 542 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~h-~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~ 620 (761)
+|+|..||..+++...+.-.+. .....+..+ ++++.++ +++.++.|+.||+.+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877533332211 122222222 2334444 55789999999999999998888765543332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-cCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc-
Q 004327 621 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 694 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l-~~h~---~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~- 694 (761)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|+.++ ..+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999998884 3221 1122233333477777777 999999999988 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 695 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 695 ---------I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|..||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222233344 78888888864444999999763 2223333332 346778888888999999886
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.82 E-value=8.8e-06 Score=99.74 Aligned_cols=242 Identities=13% Similarity=0.182 Sum_probs=156.3
Q ss_pred eEEEEEcCCCCEEEEEEC---CCeEEEEEcCC---CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 482 VESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~---Dg~I~VWdl~t---~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
-.+++|-|.|.+||+... ...|.+|.-+. ++....+......|..+.|++|+..||....|. |.+|-..+-.+
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 346899999999999864 34666665432 222222234567899999999999999988765 99999988664
Q ss_pred eeEEeec--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC----CCC----------------ee--------------
Q 004327 556 SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----NNG----------------SC-------------- 599 (761)
Q Consensus 556 ~i~~~~~--h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl----~t~----------------~~-------------- 599 (761)
-++.... ....+..+.|+|.....|.....+|.+..+++ ..+ ..
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence 4432221 23345569999987776666665566655433 111 11
Q ss_pred --eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--------EEEEc----------CCCCCEEEEEEcCC
Q 004327 600 --AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC--------RLKLQ----------GHKNQVHSVCWNTS 659 (761)
Q Consensus 600 --~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~--------i~~l~----------~h~~~I~sl~~spd 659 (761)
...+.....|.+++|+++...+++...||.|.+|....... ...+. .....+..++|..+
T Consensus 418 Ms~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (928)
T PF04762_consen 418 MSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLND 497 (928)
T ss_pred HhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCC
Confidence 12233456789999999988899999999999998543211 11111 12345788999888
Q ss_pred CCEEEEEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 660 GEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 660 g~~Lasgs-D---g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
..+++... + ..+.++++........+.........+..+...++...+++-..+|.|..++....
T Consensus 498 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 498 DTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred CEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 87777666 4 37888888544333344444444555655555565555677777888776655443
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.79 E-value=1.3e-06 Score=88.49 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=158.2
Q ss_pred cccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEE
Q 004327 418 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLAT 496 (761)
Q Consensus 418 ~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Las 496 (761)
++.+.+..+.....+++.|+..+....|...... . .......|...|+-+.=.-|.+ -+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~----~--------------h~~~cd~snn~v~~~~r~cd~~~~~~i 133 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND----G--------------HLYQCDVSNNDVTLVKRYCDLKFPLNI 133 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcc----c--------------ceeeecccccchhhhhhhcccccceee
Confidence 3455566667777788888888888877432111 1 1122223333333222111222 3566
Q ss_pred EECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee-E-EeecCCCCeEEEEEcC
Q 004327 497 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-R-TFTGHSTTVMSLDFHP 574 (761)
Q Consensus 497 gs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i-~-~~~~h~~~V~sl~fsp 574 (761)
++.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++.....+ + .....++.-.+..|+.
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 7778888888877654444432222348899999999999999999999999998655433 3 2233345567788887
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEE------ecCCCeeEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEEc-
Q 004327 575 SKEDLLCSCDNNSEIRYWSINNGSCAGVF------KCQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLKLQ- 645 (761)
Q Consensus 575 ~g~~llasgs~Dg~I~vWDl~t~~~~~~~------~~~~~i~~l~fspd~~--~Llags~dg~I~IwDl~t~~~i~~l~- 645 (761)
. ...+|++..||++.|||++........ .+.+.+..+.|++.|. .|+..-.-+.+.+.|+++++....+.
T Consensus 214 ~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 214 N-DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred C-cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 6 578889999999999999875433222 1456789999998653 34444456899999999986544332
Q ss_pred ------CCCC-CEEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 004327 646 ------GHKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 679 (761)
Q Consensus 646 ------~h~~-~I~sl~~spdg~~LasgsDg~I~IWdl~s~ 679 (761)
.|.. .|..-+|+.++.-+.+.+...+.-|++.+.
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred CccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 2332 377888888887777777666777777553
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=1.9e-06 Score=88.57 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=133.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCC--eEEEEe---ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~--~~~~~l---~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
.++.+.||++||+.- |..|.|-..++. ..+.+. +...-.-..++|+||+.+||.+...|+|++||+.... +.
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eE
Confidence 367788999888875 677777755431 122222 2222335689999999999999999999999998533 22
Q ss_pred Eee-------cCCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CeeeeEEe----cCCCeeEEEEecC
Q 004327 559 TFT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK----CQSGATQMRFQPR 617 (761)
Q Consensus 559 ~~~-------~h~~~V~sl~fsp~g-----~~llasgs~Dg~I~vWDl~t-----~~~~~~~~----~~~~i~~l~fspd 617 (761)
.+. .....|..+.|.+.. ...|++-..+|.++-|-+.. ......|. ...+|.++.|+|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 221 123456777775432 22333445577777776532 23334443 2457999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCC------eEEEEECCCCCCceeEEEe
Q 004327 618 LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG---EYLASVSDE------LVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg---~~LasgsDg------~I~IWdl~s~~~~~~i~~l 688 (761)
.+.|++++....= ++. -.+....+++-..-.+. +.+....|+ +..+|.+-+. ......
T Consensus 159 h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~ 225 (282)
T PF15492_consen 159 HRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQ 225 (282)
T ss_pred CCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeecc
Confidence 9988888764320 000 00011112211111111 111111111 1123333221 122222
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 689 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 689 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
......|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 334678999999999999999999999999999887655
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=9e-08 Score=96.40 Aligned_cols=198 Identities=12% Similarity=0.170 Sum_probs=120.3
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 511 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~ 511 (761)
.++++..+..+.++ ...+......|+-..+. ..+.++.-|.++-.+-+.+-.++.+++++.||.+.+++.+..
T Consensus 49 ~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~i--~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~ 121 (319)
T KOG4714|consen 49 ILFTGETSSQIISL-----GKGRGRCISLWERDDGI--DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD 121 (319)
T ss_pred eeecccchhheeee-----ccceEEEechhhcccCc--CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH
Confidence 34455555555554 22223333344433332 234444466665555556666788999999999999998752
Q ss_pred eE-EEEeccCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 512 TV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 512 ~~-~~~l~~h~~~V~~v~fspdg~~Lasgs~-----DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
.. ...+..-...-.+.++...++.|.++.. -+..++|+++-.+..+.... ....|.+++-+|.-.+++++|+.
T Consensus 122 ~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~ 200 (319)
T KOG4714|consen 122 LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTD 200 (319)
T ss_pred HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecC
Confidence 11 1112111111122233334444444321 23466777664332122222 22349999999999999999999
Q ss_pred CCcEEEEECCCCeeee-EE-ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCC
Q 004327 586 NSEIRYWSINNGSCAG-VF-KCQSGATQMRFQPR-LGRILAAAIENYISILDVET 637 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~-~~-~~~~~i~~l~fspd-~~~Llags~dg~I~IwDl~t 637 (761)
||.+.+||.+...... .+ .++.++..+.|+|. ...|++++.||.+.-||..+
T Consensus 201 dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 201 DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999764332 22 25577899999994 56799999999999999876
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.2e-07 Score=94.83 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=147.0
Q ss_pred EEEEEcCCCeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 004327 503 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 581 (761)
Q Consensus 503 I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~lla 581 (761)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666666778889999999999877 78899999999999999855 46777777 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCeee-eEEe---cCCCeeEEEE------ecCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCC
Q 004327 582 SCDNNSEIRYWSINNGSCA-GVFK---CQSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 647 (761)
Q Consensus 582 sgs~Dg~I~vWDl~t~~~~-~~~~---~~~~i~~l~f------spd~~~Llags~dg~I~IwDl~----t~~~i~~l~~h 647 (761)
.|..+|.|.|||++..+-. ..+. ...++..++. .+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 9999999999999864322 1111 1122333322 2334444443332 2233322 222323222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC----------------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 648 KNQVHSVCWNTSGEYLASVS--DE----------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasgs--Dg----------------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
.+.+.++.+.+-.+.++... +. ...||..+..........+ ..-..+.-.++.++|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl----~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL----STTQAIRAVEDNNYIVV 405 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc----ccccceeccccccEEEE
Confidence 34455555555444444333 11 1222222211000000000 00011222344455554
Q ss_pred EEc-CCcEEEEECCCCcEEEEccCCCCeeEEEEeCC-C-CEEEEEECCCeEEEcC
Q 004327 710 IGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV-N-GMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs~-dg~I~IwDl~~~~~~~l~~h~~~V~slafspd-g-~~LaSgs~DG~I~IWd 761 (761)
.+. .+.+.+||..+.+.+.......+|.+++...- + .||++- .|..++||+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEe
Confidence 443 44899999999999866666688888876543 3 366655 455677764
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=7.4e-08 Score=98.88 Aligned_cols=234 Identities=18% Similarity=0.289 Sum_probs=147.2
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce----eEEeecCC------------CCeEEEEEcCC-CCcEEEE
Q 004327 520 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 582 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~----i~~~~~h~------------~~V~sl~fsp~-g~~llas 582 (761)
....|++|.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3457999999999999999999999999976643311 12234443 34778888654 3444556
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE---------cCCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004327 583 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKLQGHKNQVHS 653 (761)
Q Consensus 583 gs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags---------~dg~I~IwDl~t~~~i~~l~~h~~~I~s 653 (761)
.+.|.+|++|.+.......... ...+.-.-+|.++-+.+.. .|..|..+ .+...-..|...|.+
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence 6779999999987542211111 1111111112211111100 01111111 111112458888999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCcEEEEECCCCcEE
Q 004327 654 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 654 l~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~-----~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
+.|..|...++++.|=.|.+|++.-....-.+..+..+. ..|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999888899999987644333444444443 347888999965 55667788899999999733211
Q ss_pred ---------EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 728 ---------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 728 ---------~l--------~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+ .+-...|..+.|+++|+||++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 122356889999999999987654 5799997
No 304
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.71 E-value=6.7e-06 Score=90.84 Aligned_cols=259 Identities=14% Similarity=0.116 Sum_probs=153.5
Q ss_pred cCCCCEEEEEE---------CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 488 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 488 Spdg~~Lasgs---------~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 246789999999765544433 56789999999999999885 67899999876532212
Q ss_pred Eeec-------C---------CCCeEEEEEcCCCCcEEEEEeCCCcEE--------------------------------
Q 004327 559 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIR-------------------------------- 590 (761)
Q Consensus 559 ~~~~-------h---------~~~V~sl~fsp~g~~llasgs~Dg~I~-------------------------------- 590 (761)
+..+ - -+.-..+-|+|++..+++.--++..|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 112356889999988776554444333
Q ss_pred ---EEECCCCeeeeEE-e-----cCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcC-CCCCE---E
Q 004327 591 ---YWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 652 (761)
Q Consensus 591 ---vWDl~t~~~~~~~-~-----~~~~i~~l~fspd~~~Llags~d-----g~I~IwDl~t~~~i~~l~~-h~~~I---~ 652 (761)
|+|+.+++....- . ...-+..+.|.+++..|++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3444444332111 0 11225678899998845554432 2577788877644333221 23333 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCC-----cEEEEEC
Q 004327 653 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYE-----TLELWNM 721 (761)
Q Consensus 653 sl~~s-pdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~-sl~fspdg~~L~sgs~dg-----~I~IwDl 721 (761)
.+.|. +++..++..+ || .|++++...+ ....+......|. .+.|+++++.|+..+... .|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 6665555444 77 5666666654 2345555555664 467899988877666642 5777788
Q ss_pred C-CCcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 722 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 722 ~-~~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
. .+....+....+....+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 666666665544447999999999776544
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.7e-07 Score=100.50 Aligned_cols=235 Identities=16% Similarity=0.154 Sum_probs=165.0
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 004327 427 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL 505 (761)
Q Consensus 427 ~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~V 505 (761)
.....++.+++.|+.++.|-.. .-.-...+..+..|.+.|.+++.+-|+.++.+++. |..+++
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs----------------~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKS----------------RISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred eehhheEEeeecchhhhhcCCC----------------CccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 3345688899999998888211 11223456778899999999999999999999887 999999
Q ss_pred EEcCCCeEEEEec--cCCcceEEEEEcCC-C-CEEEEE-eCCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcE
Q 004327 506 WCTESFTVKSTLE--EHTQWITDVRFSPS-L-SRLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 506 Wdl~t~~~~~~l~--~h~~~V~~v~fspd-g-~~Lasg-s~DG~I~VWDl~t~~~~i-~~~~~h~~~V~sl~fsp~g~~l 579 (761)
+|+++...+.-++ .-.+.+.++ .++. . ..|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++.
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds- 158 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS- 158 (558)
T ss_pred EEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-
Confidence 9998766553332 222222222 2221 1 133333 457899999977655333 344558999999999998754
Q ss_pred EEEEeCCCcEEEEECCC------CeeeeEE----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004327 580 LCSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 643 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t------~~~~~~~----------~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~ 643 (761)
+++.+..|.|..|.... .+....+ +......++.|+|++..+.+.+.|..|++++.++++.+..
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 44888889999999872 2122222 2345678999999999999999999999999998876554
Q ss_pred Ec--------------------------------CCCC-CEEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 004327 644 LQ--------------------------------GHKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 679 (761)
Q Consensus 644 l~--------------------------------~h~~-~I~sl~~spdg~~LasgsDg~I~IWdl~s~ 679 (761)
+. .|.. .-+.++|+..|++|+-++-=-|+|.++.++
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 32 1111 235678888999999888445888988876
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=5.6e-07 Score=95.81 Aligned_cols=157 Identities=19% Similarity=0.213 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEE--EEeCCCcEEEEECCCCe
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGS 598 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~--~i~~~~~h~~~V~sl~fsp~g~~lla--sgs~Dg~I~vWDl~t~~ 598 (761)
.+..+..++++++||++..+..+.++++..... .......-...-+++.|..+....++ ..++...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344556677888888888888777777664332 11111122233344555544444442 23344556666666677
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 599 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 599 ~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l-~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
+...+-+-..++.++|+||+.+|+++..|..|+|-....-..+..| -||+..|..++..++.. |++++ |++|++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEec
Confidence 7777777778999999999999999999999999887765555544 46999999999976655 55555 999999999
Q ss_pred CCCC
Q 004327 677 GSGS 680 (761)
Q Consensus 677 ~s~~ 680 (761)
.+++
T Consensus 223 ~sgk 226 (390)
T KOG3914|consen 223 TSGK 226 (390)
T ss_pred ccCC
Confidence 9984
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=5.1e-06 Score=98.95 Aligned_cols=244 Identities=11% Similarity=0.151 Sum_probs=152.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
.+.|.++.|..+..-++.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.++++.+-+-.=.-...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 357999999999999999999999999988775433 2333456799999999999999999888887654321000001
Q ss_pred Ee---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEc----C-Ce
Q 004327 559 TF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 629 (761)
Q Consensus 559 ~~---~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~~~~~i~~l~fspd~~~Llags~----d-g~ 629 (761)
.+ ....+....+-|-.....+ -|+ .|.....+... .+..........-+.++|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 0011223334443321111 111 12222221111 111111123355677999999988887442 3 68
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
|+|||-+ +..-..-....+--.+++|-|.|.++++.. |+.|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 332222222333446899999999998864 56799998765444444444554555699999999999
Q ss_pred EEEEE---EcCCcEEEEECCCCcEE
Q 004327 706 SLLVI---GCYETLELWNMTENKTL 727 (761)
Q Consensus 706 ~L~sg---s~dg~I~IwDl~~~~~~ 727 (761)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 33446999998776543
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-06 Score=93.24 Aligned_cols=246 Identities=14% Similarity=0.134 Sum_probs=155.3
Q ss_pred EEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCC-CEEEEEeCCCeEEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRV 547 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~DG~I~V 547 (761)
.....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|. .+|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 34457888999999999999777 7889999999999999999999888877 789999998764 56778888999999
Q ss_pred EecCCCCceeEEeec--CCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC--Ce--eeeEEecCCCeeEEEEec
Q 004327 548 WDTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN--GS--CAGVFKCQSGATQMRFQP 616 (761)
Q Consensus 548 WDl~t~~~~i~~~~~--h~~~V~sl~fsp~g-----~~llasgs~Dg~I~vWDl~t--~~--~~~~~~~~~~i~~l~fsp 616 (761)
||++.....+..+.+ ...+|..++.-+-. +.+++.... .+.+|++.- +. ++..+..++...++.+++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 999987655544443 23445554433211 234433332 355676642 22 223333345566677777
Q ss_pred CCCEEEEEEcCC-------eEE-EEECCCCeEEEEEc-CC-CCC------EEEEEEcCCCCEEEEEe--CCeEEEEECCC
Q 004327 617 RLGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQ------VHSVCWNTSGEYLASVS--DELVRVWSIGS 678 (761)
Q Consensus 617 d~~~Llags~dg-------~I~-IwDl~t~~~i~~l~-~h-~~~------I~sl~~spdg~~Lasgs--Dg~I~IWdl~s 678 (761)
..+++++....+ .|- -.|..++..+...+ ++ ... -..+.-.++.++|+..+ .+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667777766531 111 12333444433222 12 111 01122235667776655 45899999988
Q ss_pred CCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCcEEEEECC
Q 004327 679 GSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fs-pdg~~L~sgs~dg~I~IwDl~ 722 (761)
. ..+..+... .+|..++.. -++.-++..-.|..++||..+
T Consensus 421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 7 556665543 666666543 345545555666688888654
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=5e-07 Score=91.15 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE------------EEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~------------~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
|+.+.|+.+ ..|+++..++.+..+....+.+ .+.+..|.++-.+-+.+-.+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666643 3566666666655554433322 233333443333333333567899999999999999
Q ss_pred cCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeee-eEEecCCCeeEEEEecCCCEEE
Q 004327 550 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCA-GVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 550 l~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs-----~Dg~I~vWDl~t~~~~-~~~~~~~~i~~l~fspd~~~Ll 622 (761)
.+........+. .|.+ -.+.++...++ ++.++. .-+..+.|+++..+.+ ........+++++-+|....++
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 875221111111 1211 12222222222 222221 1234556666543322 1222234488899999766555
Q ss_pred -EEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEECCC
Q 004327 623 -AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 623 -ags~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IWdl~s 678 (761)
+|+.||.+.+||.+... ++..+..|+.+|+.+-|+|. +..|++++ ||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 55668999999999874 33446779999999999994 57788888 99999999764
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.61 E-value=1.1e-05 Score=92.45 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=118.4
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc--------------------------
Q 004327 573 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-------------------------- 626 (761)
Q Consensus 573 sp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-------------------------- 626 (761)
.|+|..+....-..+.+.++|..+.+....+........+.++++++++++.+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 445544444444556788889888888888777777788889999888887761
Q ss_pred --------------CCeEEEEECCC-----CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCC----
Q 004327 627 --------------ENYISILDVET-----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---- 681 (761)
Q Consensus 627 --------------dg~I~IwDl~t-----~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~---- 681 (761)
++.|.++|.++ .+.+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 24477777776 23333333 445668899999999999888 88999999987431
Q ss_pred -----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC----------CcEE-EEccCCCCe-----eEEE
Q 004327 682 -----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLA 740 (761)
Q Consensus 682 -----~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~-~l~~h~~~V-----~sla 740 (761)
...+.+... +......+|+++|..+.+..-|..|..||+.. ..++ .+.-|-.+. -.=.
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t 438 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGET 438 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCc
Confidence 112233332 33345678999998777788899999999876 2333 233332221 1112
Q ss_pred EeCCCCEEEEEE
Q 004327 741 ASTVNGMVASAS 752 (761)
Q Consensus 741 fspdg~~LaSgs 752 (761)
-.+||++|++..
T Consensus 439 ~~~dgk~l~~~n 450 (635)
T PRK02888 439 KEADGKWLVSLN 450 (635)
T ss_pred CCCCCCEEEEcc
Confidence 357888888765
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=2.4e-08 Score=113.70 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=150.1
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-cE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg-~I 589 (761)
++...+|..|+...+|++|+-+.+.|++|+..|.|++|++.++.. ...+.+|...|+.+.-+.+|..++.+.+... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455667888999999999999999999999999999999998774 7788999999999999999888887666555 57
Q ss_pred EEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-cC---CCCCEEEEEEcCCCCEEE
Q 004327 590 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 590 ~vWDl~t-~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l-~~---h~~~I~sl~~spdg~~La 664 (761)
.+|++.. +...+.| ....++.|+.....-+.|+......+||+.++.++.++ .+ ....-++..|+|+.++|+
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 8899864 3334444 34567888877666677777788999999998766552 21 222337788999998876
Q ss_pred EEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 665 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 665 sgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
- || .+||++.. ..++.|.... ....-.|+|.|..+++-+ .|||+++.+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 4 44 48999876 4555544332 222347999998887754 58999887765
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.57 E-value=5.3e-06 Score=93.58 Aligned_cols=224 Identities=12% Similarity=0.137 Sum_probs=126.0
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 596 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t 596 (761)
+.........+.++|++++++++ .||...|+...... ... .+.-..++|.+.+ . +|+-...+.|.++.--+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCc-c-EEEEECCCeEEEEEcCc
Confidence 33344557899999999998884 57777788743222 111 2345678888843 3 44566688899974333
Q ss_pred CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEC
Q 004327 597 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 676 (761)
Q Consensus 597 ~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl 676 (761)
.+....+..+..+..+-. |. ++....++.|.+||+.+++.+..+... +|..+.|+++|++++..++..+.|++.
T Consensus 99 ~~~~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp E-TT-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred cccceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 333334544443444443 44 555555669999999999999998743 489999999999999999888888876
Q ss_pred CCC--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEE
Q 004327 677 GSG--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 677 ~s~--------~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~L 748 (761)
... .....+..+..-...|.+.+|..+ .++..+.. .|+. +.+|....+..-+.++.=+.+.+..+.|
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence 432 000123333333667889999877 44544444 6665 5566666665556778888888877889
Q ss_pred EEEECCCeEEEc
Q 004327 749 ASASHDKCVKIW 760 (761)
Q Consensus 749 aSgs~DG~I~IW 760 (761)
+....|+.|..+
T Consensus 248 y~~Dr~~~v~~~ 259 (443)
T PF04053_consen 248 YLIDRDGNVISY 259 (443)
T ss_dssp EEE-TT--EEEE
T ss_pred EEEECCCCEEEE
Confidence 989999888754
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=2.6e-05 Score=80.46 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-------cCCcceEEEEEcCCC------CEEEEEeCCCeEEEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSL------SRLATSSADRTVRVW 548 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-------~h~~~V~~v~fspdg------~~Lasgs~DG~I~VW 548 (761)
=.-++||||+.+||.+...|+|+|||+.... +..+. .-...|..+.|.+.. ..|++-.++|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999999999999999999987533 33332 123567777786532 246777788888877
Q ss_pred ecCCC---Cc-eeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 004327 549 DTENP---DY-SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 549 Dl~t~---~~-~i~~~---~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
-+..+ +. ....+ ..+...|.++.|+|..+.+++.|.....-..+.. ...++++-++-.+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a----------~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA----------SSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc----------cccCceEEEEcCCCCcE
Confidence 76321 11 11222 2246789999999997666655543331101100 01122222222221111
Q ss_pred E--EEEcCC------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 622 L--AAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 622 l--ags~dg------~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
. +...|+ +..+|.+-+.+...........|..|..+|||.+|++.. +|.|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 111111 112233222222222223567899999999999999999 999999999764
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.55 E-value=2.8e-05 Score=89.63 Aligned_cols=258 Identities=10% Similarity=0.061 Sum_probs=151.4
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCc------ceE--EEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~------~V~--~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~ 562 (761)
+..+++++.++.|..+|..+++.+..+..... .+. .+.+. ++..++.++.++.|+.+|.++++...+. ..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~-~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF-GN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee-cC
Confidence 34667777889999999999998877654322 010 11111 2267888889999999999998753332 21
Q ss_pred CCC-----Ce-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEEecCCC-------------------
Q 004327 563 HST-----TV-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 608 (761)
Q Consensus 563 h~~-----~V-~sl~fsp~g~~llasgs---------~Dg~I~vWDl~t~~~~~~~~~~~~------------------- 608 (761)
... .+ .+..+.. ..++ .++ .++.|..+|..+++.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 111 01 1122221 2333 332 367899999999998887764211
Q ss_pred --e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEcCCCCCEE------EEEEc----
Q 004327 609 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN---- 657 (761)
Q Consensus 609 --i-~~l~fspd~~~Llags~dg------------------~I~IwDl~t~~~i~~l~~h~~~I~------sl~~s---- 657 (761)
+ ....+.+.++.+++++.++ .|+-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1345555667888887665 799999999999988653111110 01111
Q ss_pred CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCc
Q 004327 658 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 715 (761)
Q Consensus 658 pdg~---~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg------------------s~dg~ 715 (761)
-++. ++++++ +|.+..+|..+++ .+...... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2333 466666 8999999999984 33332211 11123333 233332 23568
Q ss_pred EEEEECCCCcEEEEccCC---------CCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 716 LELWNMTENKTLTLSAHD---------KLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 716 I~IwDl~~~~~~~l~~h~---------~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|.-+|+.+++.+-..... .....-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 889999999888222111 1111111112456788888999888664
No 315
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.54 E-value=0.00025 Score=80.04 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC-----------eE
Q 004327 482 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 545 (761)
Q Consensus 482 V~~lafSpdg~~Lasg-s~Dg----~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG-----------~I 545 (761)
+..++++|||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998866 3333 59999999998765321111 123399999988877765443 37
Q ss_pred EEEecCCCCce-eEEeecCCCC--eEEEEEcCCCCcEEEEEeCC---CcEEEEECCCC-----eeeeEEecCCCeeEEEE
Q 004327 546 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF 614 (761)
Q Consensus 546 ~VWDl~t~~~~-i~~~~~h~~~--V~sl~fsp~g~~llasgs~D---g~I~vWDl~t~-----~~~~~~~~~~~i~~l~f 614 (761)
+.|++.++... ...+...... ...+..+++++.+++..... ..|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2344443333 56788899998888766543 45888888875 33333333334433333
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCce
Q 004327 615 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 683 (761)
Q Consensus 615 spd~~~Llags~----dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~ 683 (761)
+. +..|++.+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 454444443 3578888888764 2334555655433333334455565554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CcEEEEECCCCcEEEE
Q 004327 684 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 729 (761)
Q Consensus 684 ~i~~l~-~~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l 729 (761)
....+. ...+.|..+...++.+.+...-.. ..|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333322 233445666655666554443332 2789999998876643
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.54 E-value=2.9e-06 Score=98.06 Aligned_cols=176 Identities=14% Similarity=0.210 Sum_probs=129.8
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 656 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~ 656 (761)
..++.|+....+..+|+++.+..+...... ++.-++ .+++.+++|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD- 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD- 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence 344467667788899999988888777554 344444 3457888888899999999999999999999999997655
Q ss_pred cCCCCEEEEEe----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEEC---C
Q 004327 657 NTSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---T 722 (761)
Q Consensus 657 spdg~~Lasgs----------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl---~ 722 (761)
-.|+.|++|+ |..|+|||++.-.. +..+..+.++ .-+.|+|.- ..+++++..|...+.|. .
T Consensus 225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred -ccCCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 5677787775 33689999987633 2222222222 445677765 45888899999999984 3
Q ss_pred CCcE--EEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 723 ENKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 723 ~~~~--~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+... ..+......+.++++++++..+|.|..+|.|.+|-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3211 13334455699999999999999999999999993
No 317
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00014 Score=81.13 Aligned_cols=253 Identities=11% Similarity=0.117 Sum_probs=174.0
Q ss_pred EEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEE
Q 004327 503 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 580 (761)
Q Consensus 503 I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~~i~~~-~~h~~~V~sl~fsp~g~~ll 580 (761)
+.+++..+......+..+. ....+.+.+++..++... ....+.+.+... .. .... ......-..+++++.+..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-VTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ce-eeeeccCCCccccceeeCCCCCeEE
Confidence 6666666655555554333 566778888886544443 222455555542 21 2221 11113446788889988888
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 004327 581 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWN 657 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~---dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s 657 (761)
+....+..|.+.|..+.+.............++++++++.++++.. ++.+.++|..+.+.+.....-..+ ..++++
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD 168 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence 8888889999999998888888887778899999999988888777 689999999999888875544445 889999
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcEEEEc-
Q 004327 658 TSGEYLASVS--DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLS- 730 (761)
Q Consensus 658 pdg~~Lasgs--Dg~I~IWdl~s~~~~~-~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~- 730 (761)
|+|..++.+. ++.|.++|........ ..............+.+++++.++++..... .+...|..++......
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999877777 8899999976542110 0000112233456789999999877776654 8999999998877442
Q ss_pred cCCC-CeeEEEEeCCCCEEEEEECC-CeEEE
Q 004327 731 AHDK-LVSSLAASTVNGMVASASHD-KCVKI 759 (761)
Q Consensus 731 ~h~~-~V~slafspdg~~LaSgs~D-G~I~I 759 (761)
.-.. ....+.++|+|.++.+.... +.|.+
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 1112 56778899999988777433 44443
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=2.1e-06 Score=99.13 Aligned_cols=181 Identities=17% Similarity=0.275 Sum_probs=143.1
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 569 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~s 569 (761)
++..++.|+.-..+..+|+.+.+......-....|+-++. +++++++|...|+|.+-|.++.+ .+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 4557888888888999999998887777555555666665 67899999999999999999866 48999999999998
Q ss_pred EEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEE---CC
Q 004327 570 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILD---VE 636 (761)
Q Consensus 570 l~fsp~g~~llasgs~---------Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwD---l~ 636 (761)
++.. +++|++|+. |..|+|||++..+.+..+..+....-+.|+|.- ..+++++..|.+.+.| +.
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8877 346667764 456899999998888777776777778888853 4577788889999999 44
Q ss_pred CC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 637 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 637 t~-~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
+. ..+..+......|..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 23333444555699999999999999999 999999984
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=9.9e-05 Score=74.94 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=141.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 569 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~s 569 (761)
-|++++.|...|.+++.+.++|.....+.....-=......+++..|..++.|++.+..|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 367899999999999999999988777653332222234566889999999999999999998654 4444433343444
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEEecCCCeeE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 570 LDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 570 l~fsp~g~~llasgs~Dg~I~vWDl~t~--~~~~~~~~~~~i~~--l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
-++.|-...++ .+...|.|.--+.+++ ..+..+...+++.. ++.. ..+..++-||.+.-|| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~---~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG---SSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceecc---ceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 55556333343 3444566666666554 23333333344322 2222 3466777788888887 5666666543
Q ss_pred CCCCCEEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCceeEEEeecCCCceEEEEEeC----CCCEEEEE
Q 004327 646 GHKNQVHS-VCWN-TSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP----TFPSLLVI 710 (761)
Q Consensus 646 ~h~~~I~s-l~~s-pdg~~LasgsDg---------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp----dg~~L~sg 710 (761)
..++|.. -+-+ |....|+.+.++ .--+|...++ ...+.+.... ....++. ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 3333321 1112 332333333322 2334555444 1111111110 0111111 12457778
Q ss_pred EcCCcEEEEECCCCcEEEEccCCCC---eeEEEE------eCC--CCEEEEEECCCeEEEcC
Q 004327 711 GCYETLELWNMTENKTLTLSAHDKL---VSSLAA------STV--NGMVASASHDKCVKIWK 761 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~~l~~h~~~---V~slaf------spd--g~~LaSgs~DG~I~IWd 761 (761)
+.||.+.|.-.... ......|.+. +..+.. +|- +..|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88999888844322 2223333332 222222 121 34678889999999886
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=4.7e-06 Score=95.47 Aligned_cols=181 Identities=12% Similarity=0.201 Sum_probs=130.0
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
..++|++++ ++.|+.|+.+|.|++++....- .+...|... ..+ +.++++|+.||.|.|..+-+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~-Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILE-GEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccC-CceEEEecCCCcEEEeeccCCccce
Confidence 457777775 5689999999999999987421 333445443 334 4677799999999999999999888
Q ss_pred EEecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 004327 602 VFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 674 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd-----~~~Llags~dg~I~IwDl~t--~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IW 674 (761)
.+....++.+++++|+ .+.+++|+.-| +.++.-+- .+....+....++|.+++|. |.+|+-++|--|+||
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVY 184 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEE
Confidence 8888899999999998 56789999888 77775431 12122455567899999995 778999998889999
Q ss_pred ECCCCCCceeEEEeecCCC------ceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 675 SIGSGSKGECIHELSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 675 dl~s~~~~~~i~~l~~~~~------~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
|+.+. ..+..+..... ....+.|.++.+ |+ .|...+|+|..++
T Consensus 185 d~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IGWGDSVKICSIK 233 (846)
T ss_pred ecccc---ceeeccCCCCCCCCcccCCCceEecCCCe-EE-EecCCeEEEEEEe
Confidence 99876 33333322222 223466776654 44 4444578888776
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.6e-06 Score=94.89 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=130.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||+|.|..+.+++. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888887 679999999999999987543 2 333345443 56899999999999999999887664 33
Q ss_pred EeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECC---CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 559 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~----g~~llasgs~Dg~I~vWDl~---t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
.+ ....++.+++++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|.-+ +++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 33 34578999999998 234566888777 7776532 2223333345678999999844 77888888899
Q ss_pred EEECCCCeEEEEEcCCCCC------EEEEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 632 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~------I~sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
|||+.++..+..+...... -..+.|.++.+ |+.|-..+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999998888776543322 24578876654 555666678888887
No 322
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.44 E-value=0.00068 Score=74.06 Aligned_cols=270 Identities=14% Similarity=0.090 Sum_probs=139.7
Q ss_pred EEEcCCCCEEEEEE-CCC--eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee
Q 004327 485 CHFSPDGKLLATGG-HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 485 lafSpdg~~Lasgs-~Dg--~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
=+|.+||+.|+.++ .|| .+.+.|+++++...--.+.........++++.+.|+.......|+..|+++.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 36788997665554 454 566668888877654443323333566778888887776667899999998664 34455
Q ss_pred cCCCCeEEEEEcC-CCCcEEEEEeC----------------------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC
Q 004327 562 GHSTTVMSLDFHP-SKEDLLCSCDN----------------------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 618 (761)
Q Consensus 562 ~h~~~V~sl~fsp-~g~~llasgs~----------------------Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~ 618 (761)
.....+-...|.. .+...++..-. .+.|...|+.+|+....+....-+..+.|+|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 5555554455542 22333432211 135677788888888888877788899999988
Q ss_pred CEEEEEEcCC-----eEEEEECCC-CeEEEEEcCCCC--CEEEEEEcCCCCEEEEEe---CC---eEEEEECCCCCCcee
Q 004327 619 GRILAAAIEN-----YISILDVET-QVCRLKLQGHKN--QVHSVCWNTSGEYLASVS---DE---LVRVWSIGSGSKGEC 684 (761)
Q Consensus 619 ~~Llags~dg-----~I~IwDl~t-~~~i~~l~~h~~--~I~sl~~spdg~~Lasgs---Dg---~I~IWdl~s~~~~~~ 684 (761)
..+++-|.+| .-+||-+++ +.....+..+.. .+..=-|.|||..|.--+ .+ .|.-+|+.++.. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 8888887755 125565443 333333333322 344456899998766533 22 677778877633 22
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------cEEEEECCCCcEEEEccCCC-----------Cee
Q 004327 685 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LVS 737 (761)
Q Consensus 685 i~~l~~~~~~I~sl~fspdg~~L~sgs~dg----------------~I~IwDl~~~~~~~l~~h~~-----------~V~ 737 (761)
+... ....-+..++|+..++-=+.|. -|+++++..+....+..|.. .=-
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 1344556678888544333332 46678888777654433321 124
Q ss_pred EEEEeCCCCEEEE-EECCCeEEEc
Q 004327 738 SLAASTVNGMVAS-ASHDKCVKIW 760 (761)
Q Consensus 738 slafspdg~~LaS-gs~DG~I~IW 760 (761)
.+.|+||+++|+. +...|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 6789999996654 4467776665
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=6.1e-07 Score=93.64 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=120.9
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEE
Q 004327 581 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 655 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~ 655 (761)
++.+.+-.|-+-|+.++..-. |...+.|.++.|.-.++.++.|+..|.|.++|++.+ .+...+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 455557788999998765433 335678888999998899999999999999999864 4455554 899999998
Q ss_pred EcC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-
Q 004327 656 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLS- 730 (761)
Q Consensus 656 ~sp-dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~s--l~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~- 730 (761)
.-. ++.+|.+.+ +|+|++||++..+....+..+.+|.+.-.- +.+++....|++++.|-..+||.++.+.++...
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 677777777 999999999876443448888887665433 345666778999999999999999999888332
Q ss_pred ----cCCCCeeEEEEe
Q 004327 731 ----AHDKLVSSLAAS 742 (761)
Q Consensus 731 ----~h~~~V~slafs 742 (761)
..+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 223355666664
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.39 E-value=3.6e-05 Score=86.58 Aligned_cols=188 Identities=12% Similarity=0.203 Sum_probs=125.7
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 630 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~D---g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg--~I 630 (761)
...+......+..-+|+|++..+.+..-.. ..++++|++++.........+......|+||+++|+.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444454556678889999988766554322 3599999999988888887777888999999998887765 44 68
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004327 631 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
+++|+.++.... +....+.-..-.|+|||++|+..+ .| .|.+++...... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888988776333 443333334678999999999888 34 677777766532 222222222237789999999
Q ss_pred EEEEEcC-C--cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEE
Q 004327 707 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 707 L~sgs~d-g--~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~La 749 (761)
|+..+.. | .|.++|+.++.......+.......+|.+++..|+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 9888854 3 47777776666443333333344445555555443
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.39 E-value=3.8e-05 Score=85.56 Aligned_cols=260 Identities=13% Similarity=0.079 Sum_probs=139.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC--------
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 552 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t-------- 552 (761)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999765432221 000011111221110 00011112222221
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC---------CeeEEEEec-----CC
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRFQP-----RL 618 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~---------~i~~l~fsp-----d~ 618 (761)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-.... .++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112344455567899999998654 88899999999999999888776644322 467777763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEEcCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 004327 619 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 666 (761)
Q Consensus 619 ---~~Llags~dg~I~IwDl~--t-~~----~i~~l~~h~~~I~sl~-~spd---------------------g~~Lasg 666 (761)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888999999999764 1 21 1122224667776665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCcEEEEECCCCcEE-EEcc----CCCCe
Q 004327 667 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 736 (761)
Q Consensus 667 sDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f-----spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~----h~~~V 736 (761)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ .+.. ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7999999998765 344433322223334445 235677889999999999999998877 2222 12235
Q ss_pred eEEEEeCCCCEEEEEEC
Q 004327 737 SSLAASTVNGMVASASH 753 (761)
Q Consensus 737 ~slafspdg~~LaSgs~ 753 (761)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887766554
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5.7e-05 Score=87.37 Aligned_cols=207 Identities=14% Similarity=0.241 Sum_probs=138.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 004327 528 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 597 (761)
Q Consensus 528 ~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg-----~I~vWDl~t~----- 597 (761)
+|++.+..+|.|+.+|.|.+++-. -..+..+..+...|...-|.-++..++++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988777643 2334667777766444444555555666665554 5999998642
Q ss_pred -eee---eEEe-----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEcCCCCE-E
Q 004327 598 -SCA---GVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNTSGEY-L 663 (761)
Q Consensus 598 -~~~---~~~~-----~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~~spdg~~-L 663 (761)
.++ +.+. ...++.+++++.+-..+++|-.+|.|..+.-+- +....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 2333 134578899999988999999999999985331 2222222234679999999999877 4
Q ss_pred EEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEc-cCCCCeeEE
Q 004327 664 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSL 739 (761)
Q Consensus 664 asgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-~h~~~V~sl 739 (761)
+++.-..|.+|.+... . .....+..++..+.|..+++...-+++++. ..|++||.+..... ++. +|+.....+
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 5555778999999833 2 345557778888999898887664554444 47999998765443 665 665544433
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=3.6e-05 Score=86.56 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=131.2
Q ss_pred EEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC---C-CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 004327 503 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 503 I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---D-G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..+.++|++++..... ....+.-....|+|+|..
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCCE
Confidence 3333433 4445555555567788899999887665532 2 3589999998764222 113344556789999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEE
Q 004327 579 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS 653 (761)
Q Consensus 579 llasgs~Dg~--I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d-g--~I~IwDl~t~~~i~~l~~h~~~I~s 653 (761)
++++...||. |+++|+..+...+.....+.-..-.|+|+|.+++..+.. | .|+++|++...... +......-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcC
Confidence 9998888875 666677776644433333344577899999999888764 3 57888888775432 2222222237
Q ss_pred EEEcCCCCEEEEEe--CCe--EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004327 654 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 654 l~~spdg~~Lasgs--Dg~--I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg 714 (761)
-.|+|||++|+..+ +|. |.+.|+.++.. +..+ ..........|.+++..++..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 88999999999888 554 77777766532 2222 1233334557888888776665544
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=4.8e-05 Score=86.46 Aligned_cols=274 Identities=11% Similarity=0.110 Sum_probs=152.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 556 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~ 556 (761)
|...|.--+++..+++|+.|+.-|.+++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 33445555667778999999999999999977665432 22334455666777888888889999999999987753321
Q ss_pred eEE-----eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 004327 557 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 557 i~~-----~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-----~~~~~~~~~~~i~~l~fspd~~~Llags~ 626 (761)
-.. -..|...|++++|++++..++ +|+..|.|.+-.++.. .....+...+.|..+.+.. .+|++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 111 123778899999999976555 9999999999888762 1222333445566655543 34444443
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCC-CEEEEEEcCC----CCEEEEEeCCeEEEEECCCCCCceeEEEee-----------
Q 004327 627 ENYISILDVETQVCRLKLQ-GHKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELS----------- 689 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~-~h~~-~I~sl~~spd----g~~LasgsDg~I~IWdl~s~~~~~~i~~l~----------- 689 (761)
-.. .+++.+..+....-+ ..++ .-...||-|. ..-.+.|+.-..|+|..+-.......+.++
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i 267 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEI 267 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcc
Confidence 322 233443322111000 0111 1233455443 233333443336777654321111111111
Q ss_pred ---c-------------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 690 ---C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 690 ---~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
. +.-....+.+- .+.++++-+.-| |+|+|..+...+........|.+++.+ ++-|+.-..
T Consensus 268 ~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~~ 343 (726)
T KOG3621|consen 268 PIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLNL 343 (726)
T ss_pred cCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEec
Confidence 0 00001111111 122355555555 889998888777665555667777654 444555556
Q ss_pred CCeEEE
Q 004327 754 DKCVKI 759 (761)
Q Consensus 754 DG~I~I 759 (761)
||.+++
T Consensus 344 d~~l~~ 349 (726)
T KOG3621|consen 344 DRGLKV 349 (726)
T ss_pred CCceeE
Confidence 665543
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.36 E-value=0.00033 Score=75.18 Aligned_cols=256 Identities=9% Similarity=0.102 Sum_probs=158.2
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC----------CCeEEEEecCCCCceeEEeecC--C----
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 564 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----------DG~I~VWDl~t~~~~i~~~~~h--~---- 564 (761)
+.|.|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877643 22344678999998887542 3469999999854322211111 1
Q ss_pred CCeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 004327 565 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 642 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasg-s~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~-t~~~i~ 642 (761)
.....+.++.+++.+++.- +--..|.|.|+..++.+..+..++...-.-+-+ ..|.+.|.||.+..+.+. .++...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeE
Confidence 1223456777776665443 234568888999888888887665443333332 568899999999988887 444432
Q ss_pred E----EcCCCCCE-EEEEEcCCC-CEEEEEeCCeEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 004327 643 K----LQGHKNQV-HSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 706 (761)
Q Consensus 643 ~----l~~h~~~I-~sl~~spdg-~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~----------~~~I~sl~fspdg~~ 706 (761)
+ |.....++ ..-++...+ .+++...+|.|+-.|+.... ......+... .+...-+++++..+.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 22222222 233444444 45554449999999987653 2233333211 122344788887777
Q ss_pred EEEEEcCC----------cEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEcC
Q 004327 707 LLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~dg----------~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs-~DG~I~IWd 761 (761)
|++.-..+ .|.+||+.+++.+....-+.++.+|..+.+.+ +|++.+ .++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 77653321 58888999999985444456788999999876 665554 589999986
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.00018 Score=83.10 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=133.3
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcc--eEEEEEcC--CCCEEEEEe---------CCCeEEEEecCCCCceeE
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~--V~~v~fsp--dg~~Lasgs---------~DG~I~VWDl~t~~~~i~ 558 (761)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57888888999999999999999887543321 01111112 124455553 367899999998875433
Q ss_pred EeecCCC-------------------CeE-EEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCeee
Q 004327 559 TFTGHST-------------------TVM-SLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 600 (761)
Q Consensus 559 ~~~~h~~-------------------~V~-sl~fsp~g~~llasgs~Dg------------------~I~vWDl~t~~~~ 600 (761)
.-..... .|. ..++.+.++.++ .+..++ .|..+|+++++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2221110 011 233444444444 444343 7999999999999
Q ss_pred eEEecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 601 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 601 ~~~~~~~~-i------~~l~fs----pd~~---~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...++.+| +..++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88763211 1 111111 1222 4777888999999999999988775421 11223333 2222211
Q ss_pred ------------------eCCeEEEEECCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 667 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 667 ------------------sDg~I~IWdl~s~~~~~~i~~l~~~~--------~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
.++.|..+|+.++ +.+....... .........-.+..|++++.||.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1467778888777 3333332210 1111111122456799999999999999
Q ss_pred CCCCcEE
Q 004327 721 MTENKTL 727 (761)
Q Consensus 721 l~~~~~~ 727 (761)
.++++.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=0.00035 Score=71.07 Aligned_cols=143 Identities=11% Similarity=0.015 Sum_probs=101.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEE-
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS- 569 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~s- 569 (761)
..+++.|+..+.+.-.|..+|+.+.+-. -...|.+-+.- -|++++.|++.|.+++.+..++.......... .|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--TVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh--hhccc
Confidence 4578889999999999999998876542 22334333322 46789999999999999999986544333222 2222
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004327 570 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQ 638 (761)
Q Consensus 570 l~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i-~~l~fspd~~~Llags~dg~I~IwDl~t~ 638 (761)
....++ ..++..++.|+..+..|.++..++...++.+.+ .+-++.|....|+++...|.|.-...+..
T Consensus 99 a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCC-CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 223344 467779999999999999999999998877765 34566775567777777777766665554
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=0.00061 Score=76.78 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=70.7
Q ss_pred eEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEE
Q 004327 670 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 670 ~I~IWdl~s~~~~~~i~~-l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~L 748 (761)
.-.+|++...+ ..++.. -......+.+++++|+...++.|+.||.|.+||...+... .....-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence 34567765432 233332 2245778999999999999999999999999998777444 33455678999999999999
Q ss_pred EEEECCCeEEEcC
Q 004327 749 ASASHDKCVKIWK 761 (761)
Q Consensus 749 aSgs~DG~I~IWd 761 (761)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=2.4e-06 Score=89.29 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=116.9
Q ss_pred EEEEcC--CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC----Ccee
Q 004327 484 SCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL 557 (761)
Q Consensus 484 ~lafSp--dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~----~~~i 557 (761)
.|+|+- -|-. ++.+.+-.|-+-|++++... .|. ..+.|.++.|...+++++.|+..|.|.++|++.. ..+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 345553 2333 45555778888898886443 232 5567999999988899999999999999999865 3333
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEecCCC---eeEEEEecCCCEEEEEEcCCeEE
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~---~~~~~~~~~---i~~l~fspd~~~Llags~dg~I~ 631 (761)
.. ..|...|+++.........|.+.+.+|.|++||++.-++ +..+..+.. ..-+.+.+..+.+++++.|...+
T Consensus 293 ~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 33 348899999887763345666777899999999997666 666663322 22345567788999999999999
Q ss_pred EEECCCCeEEEEEcC
Q 004327 632 ILDVETQVCRLKLQG 646 (761)
Q Consensus 632 IwDl~t~~~i~~l~~ 646 (761)
||.++.+..+.++.-
T Consensus 372 iWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPF 386 (425)
T ss_pred EEecccCceeeccCC
Confidence 999999988887653
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.00023 Score=75.49 Aligned_cols=193 Identities=13% Similarity=0.122 Sum_probs=134.5
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCeeeeEEecCCCe---eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQSGA---TQMRFQPRLGRILAAAI-----ENYISILDVE 636 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg-~I~vWDl~t~~~~~~~~~~~~i---~~l~fspd~~~Llags~-----dg~I~IwDl~ 636 (761)
....++.+|.....++.+-.-| ...+||..++.....+.....- -..+|++||.+|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456888997777777776655 5788999999988777644332 24789999999998755 4789999999
Q ss_pred -CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCceeEEE--e--ecCC
Q 004327 637 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG 692 (761)
Q Consensus 637 -t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg-------------------~I~IWdl~s~~~~~~i~~--l--~~~~ 692 (761)
+...+.++..|.-.-..+.+.|||+.|+++..| .+.+.|..++ ..+.. + ..+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888898887777889999999888776422 2333444444 22322 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------cEEEEECCCCc-EEE-----EccCCCCeeEEEEeCCCCEEEEEE-CCCeEE
Q 004327 693 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTENK-TLT-----LSAHDKLVSSLAASTVNGMVASAS-HDKCVK 758 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~dg-------~I~IwDl~~~~-~~~-----l~~h~~~V~slafspdg~~LaSgs-~DG~I~ 758 (761)
..|.-+++.++|..++..-..+ -|.+++....- .+. ...-.+.|-+|+++.++.++++.+ .-|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999997555554443 34555443321 111 123457799999999998775554 778899
Q ss_pred EcC
Q 004327 759 IWK 761 (761)
Q Consensus 759 IWd 761 (761)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=2.8e-06 Score=61.71 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 507 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 507 (761)
+.+..+.+|.+.|++|+|+|++.+|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.4e-05 Score=91.48 Aligned_cols=261 Identities=10% Similarity=0.077 Sum_probs=149.4
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 483 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~----Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
+-..|+|...+||+++. .|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 34588998889888863 58888883 4555443332 122366799999988899999999999999887543 44
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---E--ecCCCe--eEEEEecCCC------EEEEEE
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---F--KCQSGA--TQMRFQPRLG------RILAAA 625 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~---~--~~~~~i--~~l~fspd~~------~Llags 625 (761)
....|..+|..+.|+++|+. +++++.-|.|.+|...--..+.. + .....+ .|...++++. ..++++
T Consensus 96 v~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 55669999999999999854 55999999999998763222211 1 112233 3344455522 233444
Q ss_pred cCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004327 626 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 626 ~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd 703 (761)
.+..+- .|+.+......... |. =.|+|..++.+. +|+|+..|-.. .+........ . ..+-|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS-~-vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDS-E-VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccc-h-HHHHHhcc
Confidence 444333 34333211111111 11 125666666666 88888777432 2222221111 1 11222232
Q ss_pred CCEEEEEEcCCcEEEEEC-CCCc---------------------------EE----EE-ccCCCCeeEEEEeCCCCEEEE
Q 004327 704 FPSLLVIGCYETLELWNM-TENK---------------------------TL----TL-SAHDKLVSSLAASTVNGMVAS 750 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl-~~~~---------------------------~~----~l-~~h~~~V~slafspdg~~LaS 750 (761)
...|++...+-.+.+|-+ .+|. ++ .+ ......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222211 1110 00 00 123456999999999999999
Q ss_pred EECCCeEEEcC
Q 004327 751 ASHDKCVKIWK 761 (761)
Q Consensus 751 gs~DG~I~IWd 761 (761)
|...|.|.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.26 E-value=0.00017 Score=86.43 Aligned_cols=227 Identities=14% Similarity=0.187 Sum_probs=135.0
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004327 520 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 599 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~ 599 (761)
....|.++.|.-+..-|+.+..+|.|.+-|.++.. +.....-...|.+++|+||... ++..+.+.+|.+-+- +..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~-l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEEL-LALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcE-EEEEeCCcEEEEEec-cccc
Confidence 33689999999999999999999999999888754 3334445678999999999654 445554566655432 2222
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--
Q 004327 600 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 667 (761)
Q Consensus 600 ~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~----------~~i~~l~~h~~~I~sl~~spdg~~Lasgs-- 667 (761)
+...... ..-.+. +.++.++....=.-|.-..+ ........-.+.-++|+|--||.|+++..
T Consensus 143 i~E~~L~-----~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 143 IAEKPLD-----ADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred hhccccc-----cccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 2211110 000111 12223332221111111111 10000001112235799999999999843
Q ss_pred ---C-CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCcEEEEECCCCcEE----EEccCCCCe
Q 004327 668 ---D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL----TLSAHDKLV 736 (761)
Q Consensus 668 ---D-g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~~~~~~----~l~~h~~~V 736 (761)
+ ..|+|||-. + ..-..-....+--.+++|-|.|..+++... |+.|.+|.-++-+-- .+......|
T Consensus 217 ~~~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 4 699999976 2 111122223344578899999998888755 447999986543221 233444559
Q ss_pred eEEEEeCCCCEEEE---EECCCeEEEc
Q 004327 737 SSLAASTVNGMVAS---ASHDKCVKIW 760 (761)
Q Consensus 737 ~slafspdg~~LaS---gs~DG~I~IW 760 (761)
..++|+.++.+||+ +.....|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999998887 4444459988
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00041 Score=80.52 Aligned_cols=194 Identities=13% Similarity=0.164 Sum_probs=134.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc-eEEEEEcCCCCEEEEEeCCC-----eEEEEecCCCC
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 554 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~-V~~v~fspdg~~Lasgs~DG-----~I~VWDl~t~~ 554 (761)
.|+| |++.+..+|.|+.+|.|.+.+- ..+.+..+..+... |..+-......+|++.+.|+ .|+||+++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 4677889999999999998873 34555677777766 44444444446888877764 58999987431
Q ss_pred -----cee---EEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---C--CeeeeEEecCCCeeEEEEecC
Q 004327 555 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N--GSCAGVFKCQSGATQMRFQPR 617 (761)
Q Consensus 555 -----~~i---~~~~----~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t--~~~~~~~~~~~~i~~l~fspd 617 (761)
.++ +.+. ....++.+++.+.+ -..+|.|-.+|.|.++.=+ . .+.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2221 12456888888887 4566688889999988532 1 122233345678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 618 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
+..++.+.....|.+|.+....+ ...+..|...+.|..|++...-++++++..|.+|+...
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 88855566667888888885543 44467788899999998766657777788899999864
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00038 Score=77.78 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=155.0
Q ss_pred eEEEEEcCCCCEE-EEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCcee
Q 004327 482 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 557 (761)
Q Consensus 482 V~~lafSpdg~~L-asgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---DG~I~VWDl~t~~~~i 557 (761)
-.+++++++++.+ ++...++.|.+.|..+.+......--. ....++|+++++.++++.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3467888888854 445556899999988877776664332 5678999999988777765 6888888888776544
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 629 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~-----~~~~~~~i~~l~fspd~~~Llags~d---g~ 629 (761)
. ......+ ..+++.|++..++++-..++.|.++|........ ..........+.+++++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3333344 8899999998888777789999999987666553 23334556789999999987777664 59
Q ss_pred EEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 630 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~-~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999877665222222 456789999999998886 5789999988763322222222223345555655544
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.0001 Score=84.71 Aligned_cols=215 Identities=11% Similarity=0.062 Sum_probs=134.4
Q ss_pred EcCCCCEEEEE-ECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC----eEEEEecCCCCceeEEee
Q 004327 487 FSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 487 fSpdg~~Lasg-s~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG----~I~VWDl~t~~~~i~~~~ 561 (761)
+++||+.+... -..+.+.++|.++.+....+.-.. ....+.++++++++++.+.+. ++...+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 44566554322 234667778888877776664332 446788999999998887432 333333322111 11111
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----CeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004327 562 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 635 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-----~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl 635 (761)
- ..+ -.+.++|+..++ .++.|.++|..+ ...+..+........+.++||++++++++. ++.|.|+|+
T Consensus 278 i--~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred h--HHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 000 123456665554 267899999998 567788888888999999999999888876 799999999
Q ss_pred CCCeE------------EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC------CCC-ceeEEEeecCCCce
Q 004327 636 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 695 (761)
Q Consensus 636 ~t~~~------------i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s------~~~-~~~i~~l~~~~~~I 695 (761)
.+.+. +....--.+ -...+|+++|..+.+.. |..|..|++.. +.. ...+..+..|..+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332222 34578899998777777 99999999875 111 23444444443333
Q ss_pred EEEE-----EeCCCCEEEEEE
Q 004327 696 HSCV-----FHPTFPSLLVIG 711 (761)
Q Consensus 696 ~sl~-----fspdg~~L~sgs 711 (761)
+-.+ -.++|+||++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 2222 356777776654
No 341
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=3.8e-06 Score=61.03 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.8
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
++++.++.+|...|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.00026 Score=80.07 Aligned_cols=224 Identities=12% Similarity=0.138 Sum_probs=120.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE-ecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW-Dl~t~ 553 (761)
+....-....+.++|+|++++++ .||...||.....+.... +.-...+|.+.+ .+|+-...++|.|+ ++++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 33344457889999999999885 478888888555444332 334568898854 57777778889996 44332
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 633 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~Iw 633 (761)
. ...+.. ...+..|.. |. +|+..+ ++.|.+||+.+++.++.+.... +..+.|++++.+++..+.+ .++|+
T Consensus 101 ~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 V--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred c--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEE
Confidence 2 122221 122343433 44 444444 4489999999999999998653 8999999998888888754 56665
Q ss_pred ECCCC-----------eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 634 DVETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 634 Dl~t~-----------~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
+.+.. ..+..+..-...|.+.+|..+ -+|++... .|+.+ ..+ ....+..-..++.-+.+.+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl--~~G----e~~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYL--VNG----ETGIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEE--ETT----EEEEEEE-SS--EEEEEET
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEE--EcC----CcceEEEcCCceEEEEEEc
Confidence 54322 022222222567899999877 44444334 77763 332 2223333356777788888
Q ss_pred CCCEEEEEEcCCcEEEEECCC
Q 004327 703 TFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~ 723 (761)
..+.+++...++.|..+.+..
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--H
T ss_pred cCCEEEEEECCCCEEEEEECH
Confidence 778888888888888887643
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.19 E-value=0.0013 Score=69.70 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=131.4
Q ss_pred CCCCEEEEEECCCeEEEEEcCC-CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE--------
Q 004327 489 PDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 559 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t-~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~-------- 559 (761)
..++.|+.|+.+| |.++++.. ....... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999888 89999833 3333333 223399999999877776664 599999998754322210
Q ss_pred -----eecCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 004327 560 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 560 -----~~~h~~~V~sl~--fsp~g~~llasgs~Dg~I~vWDl~t~-----~~~~~~~~~~~i~~l~fspd~~~Llags~d 627 (761)
.......+..++ -...+...++.+. ...|.+|..... ...+.+.....+..++|.. +.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-C
Confidence 111223344444 1233344454444 558888877542 5667788889999999993 5566655 4
Q ss_pred CeEEEEECCCCeEEEEEcCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce
Q 004327 628 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h------------~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
....++|+.++.....+... ..++..+.. +++++|++ .|..-.+.|.... ... -..+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence 55888999876544333211 123333333 44566654 4444444454332 111 112221 2234
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 728 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 728 (761)
..+++ ..+||++.+. +.|.||++.+++.+.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3456776666 459999999998873
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.4e-05 Score=91.55 Aligned_cols=258 Identities=13% Similarity=0.093 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CceeEEe
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 560 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~-~~~i~~~ 560 (761)
++++||+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.|.+|.++-- ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 667999999888999999999999999888877777889999999999999999999999999999987632 2111122
Q ss_pred ecCC--CC--eEEEEEcCCCCcE------EEEEeCCCcEE-EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 561 TGHS--TT--VMSLDFHPSKEDL------LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 561 ~~h~--~~--V~sl~fsp~g~~l------lasgs~Dg~I~-vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
..|. .. ..|..+++++..+ .++|+ +.-+- .++.+.....+.... .-.|+|..|++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCce
Confidence 2232 22 3344445553322 23333 33332 333332111111111 12467788889999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECC----------------CCCC-c--------e
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG----------------SGSK-G--------E 683 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~----------------s~~~-~--------~ 683 (761)
|+..|-... +....+.. +. .-+-|.+...-|++.- +-.+.++-+. .+.. . .
T Consensus 214 Vyyvdq~g~-~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQNGR-QRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCCCc-EEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 998885543 22221110 00 1112222211111111 1111111110 0000 0 0
Q ss_pred eE---EEe-ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc--------EEEE---ccCCCCeeEEEEeCCCCEE
Q 004327 684 CI---HEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTL---SAHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 684 ~i---~~l-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~~l---~~h~~~V~slafspdg~~L 748 (761)
.+ ..+ ...+..+.|+++...+..|+.|...|.+.+|--.... ...+ ....+.|+.+.|.|-...+
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 00 000 1134568999999999999999999999999532221 1122 2345789999999865544
Q ss_pred EE
Q 004327 749 AS 750 (761)
Q Consensus 749 aS 750 (761)
+.
T Consensus 371 av 372 (1416)
T KOG3617|consen 371 AV 372 (1416)
T ss_pred hh
Confidence 43
No 345
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.18 E-value=0.0015 Score=75.97 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=116.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCC-cceE---E-------EEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~---~-------v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+..|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..+++++.|+.|..+|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577777778899999999999987764321 1111 1 122 2356778888999999999998864432
Q ss_pred eec-CC--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEecCCC----------------------
Q 004327 560 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 608 (761)
Q Consensus 560 ~~~-h~--~~V~s-l~fsp~g~~llasgs-----~Dg~I~vWDl~t~~~~~~~~~~~~---------------------- 608 (761)
-.. +. ..+.+ ..+. + +.+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 221 11 11211 1111 2 34443322 268999999999998866542110
Q ss_pred -----------eeEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEcCCCCCE---------E
Q 004327 609 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H 652 (761)
Q Consensus 609 -----------i~~l~fspd~~~Llags~d-----g-----------~I~IwDl~t~~~i~~l~~h~~~I---------~ 652 (761)
-..+.+.+..+.++.+..+ + .|.-.|+++++....+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0135777777777776622 2 68888999999988776522211 1
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEECCCCCC
Q 004327 653 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 653 sl~~spdg~---~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
-+.+..+|+ .++.+. +|.+++.|-++++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334665 666666 99999999998743
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.16 E-value=0.0014 Score=72.39 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=133.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-cc-------C---------CcceEEEEEcCCCCEEEEEeC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE-------H---------TQWITDVRFSPSLSRLATSSA 541 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~-------h---------~~~V~~v~fspdg~~Lasgs~ 541 (761)
...+....|||||+.||... ++.|.+++..++.....- .+ - -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 689999998777444221 11 0 122356889999999987644
Q ss_pred C-Ce-----------------------------------EEEEecCCCCcee-EEe---ecCCCCeEEEEEcCCCCcEEE
Q 004327 542 D-RT-----------------------------------VRVWDTENPDYSL-RTF---TGHSTTVMSLDFHPSKEDLLC 581 (761)
Q Consensus 542 D-G~-----------------------------------I~VWDl~t~~~~i-~~~---~~h~~~V~sl~fsp~g~~lla 581 (761)
| .. +.|+|+.+++... ... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 3334444433211 111 122345778889888763443
Q ss_pred E-EeCC---CcEEEEECCCCeeeeEEecC--CC---eeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEEcCCC
Q 004327 582 S-CDNN---SEIRYWSINNGSCAGVFKCQ--SG---ATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 582 s-gs~D---g~I~vWDl~t~~~~~~~~~~--~~---i~~l~fs-pd~~~Llags-~dg--~I~IwDl~t~~~i~~l~~h~ 648 (761)
. ...+ ..+.++|..++.+...+... .- .....|. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3 3332 24667788776554444322 21 2355655 6666655544 456 6777788877644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004327 649 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 649 ~~I~s-l~~spdg~~Lasgs--Dg----~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~ 712 (761)
-.|.. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+.......+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66755 67888877665444 22 5666666512 344455544444478999999998876654
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.0013 Score=71.68 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=124.8
Q ss_pred CeEEEEEcCCCeEEEEecc-CCcceEEE---EEcCC----CCEEEEEeC----------CCeEEEEecCCC-----Ccee
Q 004327 501 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 557 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~-h~~~V~~v---~fspd----g~~Lasgs~----------DG~I~VWDl~t~-----~~~i 557 (761)
..|+|.|..+++.+.++.- ....|+++ .|..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688888888877765532 22334444 34432 467777753 289999999874 2222
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE--E
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL--D 634 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~Iw--D 634 (761)
..-....++|++++-. ++.++++. ++.|.+|++...+ ..........+........+++++++.....|.++ +
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2234457889999877 34555444 5789999998877 55554444444444444446799999988877776 4
Q ss_pred CCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC-------C-CceeEEEeecCCCceEEE---EEe
Q 004327 635 VETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 701 (761)
Q Consensus 635 l~t~~~i~~-l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~-------~-~~~~i~~l~~~~~~I~sl---~fs 701 (761)
....+.... -......++++.|-++++.++++. +|.+.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 433322221 122455788999986667777777 999999887631 1 112223333 34556666 444
Q ss_pred C--CCC------EEEEEEcCCcEEEE
Q 004327 702 P--TFP------SLLVIGCYETLELW 719 (761)
Q Consensus 702 p--dg~------~L~sgs~dg~I~Iw 719 (761)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 222 48888899988743
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.08 E-value=0.00056 Score=74.49 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=119.1
Q ss_pred eEEEEecCCCCceeEEee-cCCCCeEEEEE---cCC---CCcEEEEEeC----------CCcEEEEECCCC-----e--e
Q 004327 544 TVRVWDTENPDYSLRTFT-GHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--C 599 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~-~h~~~V~sl~f---sp~---g~~llasgs~----------Dg~I~vWDl~t~-----~--~ 599 (761)
.|++.|..+... +..+. .....+++++. ..+ ...+++.|.. .|.|.++++... + .
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777766543 33222 12333444443 322 1455555532 288999999884 2 3
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 600 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 600 ~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~-~i~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
+......++|++++-. +++ ++++.++.|++|++...+ ....-. .....+.++... +.+|++|. ...+.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3445567888888877 345 555556999999998776 433222 233466676655 55888888 666666644
Q ss_pred CCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC-------C--cEE--EEccCCCCeeEE---E
Q 004327 677 GSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 740 (761)
Q Consensus 677 ~s~~~~~~i~~--l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~-------~--~~~--~l~~h~~~V~sl---a 740 (761)
.... ..+.. -......+.++.|-++++.++++..+|.|.++.... + +.. ........|+++ +
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4321 22222 233455688888886667899999999999997753 2 222 223345668887 4
Q ss_pred EeCC--CC------EEEEEECCCeEEE
Q 004327 741 ASTV--NG------MVASASHDKCVKI 759 (761)
Q Consensus 741 fspd--g~------~LaSgs~DG~I~I 759 (761)
+.|. +. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4451 22 4888889998863
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=0.00052 Score=77.33 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=91.2
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE----eCCCc----EEEEECCCCee----eeEEecCCCeeEE
Q 004327 545 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQM 612 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasg----s~Dg~----I~vWDl~t~~~----~~~~~~~~~i~~l 612 (761)
+.++.+...+..+-.+........++.|+-...+.+.+. +.+|. ..+|++...+. +..+...+.+.++
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 444444443333333333444556777776555555443 22343 34566654432 3345567889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
+++|+..+++.|+.||.|.+||...+..... ...-..+.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999987744332 2445678899999999999999 799999998653
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.05 E-value=0.0047 Score=64.52 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=115.0
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccC-CcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 472 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h-~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.+.+.+-.+.|..++|+|+.+ ++++....+.|..++. +++.+..+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455667677799999999755 5666677788888886 47777766433 35688899988887777666789999999
Q ss_pred cCCCCce--e---EEe-----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CeeeeEEe---------cCC
Q 004327 550 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 607 (761)
Q Consensus 550 l~t~~~~--i---~~~-----~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t---~~~~~~~~---------~~~ 607 (761)
+...... . ..+ ..++..+-.++|++.++.++++.- .....+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 124456899999999888886654 44555555542 21111111 123
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 004327 608 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 674 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~IW 674 (761)
.+..+.++|..+.|++-+. +..|.++| ..++.+..+.-.. ...-.|+|+++|++++++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4788999998887777666 56888899 5565554433221 24678999999987776655555554
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0017 Score=67.82 Aligned_cols=199 Identities=12% Similarity=0.172 Sum_probs=113.3
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~--~~i~~l~fspd~~~Llags~dg~I~IwDl~ 636 (761)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... +....+++..++.++++--.++.++++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999989999999999999999975 8888887754 457889998775444444448899999884
Q ss_pred CC------eEEEEEc-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC--CCCceeEEEe------ecCCCceE
Q 004327 637 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 696 (761)
Q Consensus 637 t~------~~i~~l~-----~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s--~~~~~~i~~l------~~~~~~I~ 696 (761)
.. .....+. .++..+-.++|++.+..|+++. ..-..+|.+.. ......+... ...-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111121 2456789999999877777666 55455555543 1111111111 11234578
Q ss_pred EEEEeCCCCEEEEEEcC-CcEEEEECCCCcEE---EEcc--C-----CCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 697 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 697 sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~---~l~~--h-----~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.+.++|....|++-+.. ..|.++| ..|+++ .+.. | -...-.|+|.++|.+.+ .+.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 89999987766666654 4888889 556555 2222 1 12478899999986444 4566666655
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.00 E-value=3.3e-06 Score=94.45 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCeEEEEEcCCCeE--EEEeccCCcceEEEEEcC-CCCEEEEEe----CCCeEEEEec
Q 004327 480 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWDT 550 (761)
Q Consensus 480 ~~V~~lafSpdg--~~Lasgs~Dg~I~VWdl~t~~~--~~~l~~h~~~V~~v~fsp-dg~~Lasgs----~DG~I~VWDl 550 (761)
..+.|++++-+. .++++|..+|.|.+-.+..... .....+|...+++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 347778776643 4789999999999987754322 344567888999999998 566777763 2568999999
Q ss_pred CCCC----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 004327 551 ENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 551 ~t~~----~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~ 626 (761)
.+.- .......+......+++|..+ ..++.+|.....|.++|++-.......-....+..+.+.|-..-.++...
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 8641 111111223345668889855 56666888888999999983221111111123555667773333556666
Q ss_pred CCeEEEEEC-CCCe-EEEEEcC----CCCCEEEEEEcCCCC-EEEEEe--CCeEEEEECCC
Q 004327 627 ENYISILDV-ETQV-CRLKLQG----HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 678 (761)
Q Consensus 627 dg~I~IwDl-~t~~-~i~~l~~----h~~~I~sl~~spdg~-~Lasgs--Dg~I~IWdl~s 678 (761)
||.|.+||. ++-+ ++..+.. ....+..++|.|... .+++.. .++|+.||+..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999993 3322 2222221 122488999999653 444555 56999999864
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.98 E-value=0.0026 Score=67.37 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=124.1
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee---------
Q 004327 531 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 601 (761)
Q Consensus 531 pdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~--------- 601 (761)
..++.|+.|+.+| |.++++........... ...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999999 89999943333223222 33499999998866666554 5999999987543333
Q ss_pred ------EEecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Q 004327 602 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 668 (761)
Q Consensus 602 ------~~~~~~~i~~l~--fspd~~~Llags~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~~spdg~~LasgsD 668 (761)
.+....++...+ -...+...+++.....|.+|..... +...++. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111222333333 2234556666677778888877653 3445554 45788999998 567777877
Q ss_pred CeEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCee
Q 004327 669 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 737 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~----------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~ 737 (761)
+...+.|+.++.. ..+...... ..++..+.+ +++.+|++ .+..-.+.|..+.... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchh
Confidence 7789999987543 222211111 122322333 34555544 2333334454332221 1112233556
Q ss_pred EEEEeCCCCEEEEEECCCeEEEcC
Q 004327 738 SLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 738 slafspdg~~LaSgs~DG~I~IWd 761 (761)
++++. ..||+..+.+ .|-||+
T Consensus 233 ~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCC-EEEEEE
Confidence 66664 4577766654 488774
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.016 Score=67.47 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=89.6
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcc-eEEEEEcC---CCCEEEEEe------CCCeEEEEecCCCCceeEEee
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~-V~~v~fsp---dg~~Lasgs------~DG~I~VWDl~t~~~~i~~~~ 561 (761)
..|+.++.|+.|..+|.++++.+......... -..+.-+| ++ .|+++. .+|.|..+|.++++...+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46777888999999999999998776421100 00111112 33 455543 268999999998875333221
Q ss_pred cCC------------------------------CCeE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEECC
Q 004327 562 GHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 595 (761)
Q Consensus 562 ~h~------------------------------~~V~-sl~fsp~g~~llasgs~----Dg-----------~I~vWDl~ 595 (761)
... ..+. .+.+.+..+.+++..++ ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 1111 23566654444433322 22 67788999
Q ss_pred CCeeeeEEecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 004327 596 NGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 641 (761)
Q Consensus 596 t~~~~~~~~~~~----------~i~~l~fspd~~---~Llags~dg~I~IwDl~t~~~i 641 (761)
+|+....|.... ...-+.+..+++ .++.+..+|.++++|-++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999887776311 112233334555 5667888999999999999876
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0023 Score=68.76 Aligned_cols=239 Identities=12% Similarity=0.140 Sum_probs=148.5
Q ss_pred eeccCCCCCCCCCccccceecCCCceeEEEEEecCCCC----CeEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCeEEEE
Q 004327 443 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS----KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKST 516 (761)
Q Consensus 443 ~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~----~V~~lafSpdg~~Lasgs--~Dg~I~VWdl~t~~~~~~ 516 (761)
..|.+......+..++.+||..+-....++.....|.. ....+.++.|++++++.. -.-+|.|.|+...+.+.+
T Consensus 54 ~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e 133 (342)
T PF06433_consen 54 ETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGE 133 (342)
T ss_dssp EEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeee
Confidence 44555555556667778888888777777766655333 234568899999988764 346899999999999888
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE----eecCCCCeE-EEEEcCCCCcEEEEEeCCCcEEE
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRY 591 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~----~~~h~~~V~-sl~fsp~g~~llasgs~Dg~I~v 591 (761)
+... ++..-.-+ ....|.+-|.||.+.-..++........ |.....++. .-++...+..+++ -+.+|.|+-
T Consensus 134 i~~P-GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~ 209 (342)
T PF06433_consen 134 IDTP-GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYS 209 (342)
T ss_dssp EEGT-SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEE
T ss_pred ecCC-CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEE
Confidence 7532 22211112 2346888899999999998854433321 111122222 3334434334443 556888888
Q ss_pred EECCCCeeee--EEec-----------CCCeeEEEEecCCCEEEEEEcC---C-------eEEEEECCCCeEEEEEcCCC
Q 004327 592 WSINNGSCAG--VFKC-----------QSGATQMRFQPRLGRILAAAIE---N-------YISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 592 WDl~t~~~~~--~~~~-----------~~~i~~l~fspd~~~Llags~d---g-------~I~IwDl~t~~~i~~l~~h~ 648 (761)
.|+....... .+.. +++..-+++++..++|++.-.. + .|-+||+.+++.+..+.. .
T Consensus 210 ~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~ 288 (342)
T PF06433_consen 210 ADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-E 288 (342)
T ss_dssp EEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-E
T ss_pred EeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-C
Confidence 8887554322 2211 2344568888887777764331 1 588999999999998873 3
Q ss_pred CCEEEEEEcCCCC-EEEEEe--CCeEEEEECCCCCCceeEEEee
Q 004327 649 NQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 689 (761)
Q Consensus 649 ~~I~sl~~spdg~-~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~ 689 (761)
.++.+|..+.+.+ +|++.+ ++.|.+||..++ +.+..+.
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 4677999998876 555544 789999999998 4555544
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0036 Score=67.53 Aligned_cols=219 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004327 526 DVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 604 (761)
Q Consensus 526 ~v~fspdg~~-Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~ 604 (761)
+..|.++... +++--..+.|.-|+..++.. ..+. +.+.+.++.....+..++ ++ +..+++++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEec
Confidence 3456776664 44555678899999886653 3333 233445555444433444 55 3457778876665533222
Q ss_pred -c-----CCCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 605 -C-----QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 605 -~-----~~~i~~l~fspd~~~Llags~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
. ....+.+.+.|+|.+.+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.++.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 133567888999766554333 134666665 4555555555555667899999998888777
Q ss_pred --CCeEEEEECCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEE-EEccCCCCeeEE
Q 004327 668 --DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 739 (761)
Q Consensus 668 --Dg~I~IWdl~s--~~~~--~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h~~~V~sl 739 (761)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888887752 2111 11222333456667788888998665555554 99999998 6666 444444778888
Q ss_pred EEe-CCCCEEEEEE
Q 004327 740 AAS-TVNGMVASAS 752 (761)
Q Consensus 740 afs-pdg~~LaSgs 752 (761)
+|- ++.+.|+..+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 886 3445444333
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=2.9e-06 Score=94.84 Aligned_cols=197 Identities=18% Similarity=0.267 Sum_probs=134.6
Q ss_pred cceEEEEEcCCC--CEEEEEeCCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEEC
Q 004327 522 QWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 594 (761)
Q Consensus 522 ~~V~~v~fspdg--~~Lasgs~DG~I~VWDl~t~~~~-i~~~~~h~~~V~sl~fsp~g~~llasgs----~Dg~I~vWDl 594 (761)
..+.|+++..+. -++++|..+|.|.+-.++..... .....++...+++++|++-+..+||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777776644 36888999999999988765543 4566778899999999988777776663 4678999999
Q ss_pred CCC--eeeeE--Ee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcC-CCCEEEEE
Q 004327 595 NNG--SCAGV--FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASV 666 (761)
Q Consensus 595 ~t~--~~~~~--~~--~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~~sp-dg~~Lasg 666 (761)
.++ .+... |. ...+..+++|..+.+.+++|.....+.++|++-.. ....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 22111 11 23456688999887888888888899999998332 11111 344667788888 77888888
Q ss_pred eCCeEEEEEC-CCCCCceeEEEeecCC----CceEEEEEeCCCCE-EEEEEcC-CcEEEEECC
Q 004327 667 SDELVRVWSI-GSGSKGECIHELSCTG----NKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 722 (761)
Q Consensus 667 sDg~I~IWdl-~s~~~~~~i~~l~~~~----~~I~sl~fspdg~~-L~sgs~d-g~I~IwDl~ 722 (761)
.|+.|.+||. +.-+ ..+..+.... ..+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8999999993 3221 1222222222 34888999997643 4444444 489999874
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.92 E-value=0.0058 Score=68.94 Aligned_cols=221 Identities=12% Similarity=0.073 Sum_probs=126.0
Q ss_pred ceEEEEEcCCCCEEEEE-eCCC----eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC----------C
Q 004327 523 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 587 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasg-s~DG----~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D----------g 587 (761)
.+..+.++|++++||.+ +..| .|+++|+++++.....+.... ...+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998866 3333 599999998764333333221 23499999988888776433 2
Q ss_pred cEEEEECCCCeee--eEEecCC--C-eeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEcCCCCCEEE
Q 004327 588 EIRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 653 (761)
Q Consensus 588 ~I~vWDl~t~~~~--~~~~~~~--~-i~~l~fspd~~~Llags~d----g~I~IwDl~t~-----~~i~~l~~h~~~I~s 653 (761)
.|++|.+.+.... ..+.... . ...+..+++++++++.... ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888765432 4444322 2 4578889999998876553 46888999874 333333323333334
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECC-CCc
Q 004327 654 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 725 (761)
Q Consensus 654 l~~spdg~~Lasgs----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~-~~~ 725 (761)
+... .+.+++... .+.|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444444443 34777788877653223334444555443344444555566555544 79999999 554
Q ss_pred EEEEc-cCCCCeeEEEEeCCCC
Q 004327 726 TLTLS-AHDKLVSSLAASTVNG 746 (761)
Q Consensus 726 ~~~l~-~h~~~V~slafspdg~ 746 (761)
...+. .-.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 44333 2334455555555544
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.019 Score=64.86 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=102.0
Q ss_pred eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC-c----eeEEeecCCCCeEEEEEcCCC
Q 004327 502 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 576 (761)
Q Consensus 502 ~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~-~----~i~~~~~h~~~V~sl~fsp~g 576 (761)
.|.||+.. |+.+.++.-..+.|.++.|+.+ ..|++...||.+++||+.... . .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 58888864 4556555444488999999875 456667799999999986322 0 011111111122222333233
Q ss_pred CcEEEEEeCCCcEEEEECCCCe-eeeEE-ecCCC---------eeE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004327 577 EDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSG---------ATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 644 (761)
Q Consensus 577 ~~llasgs~Dg~I~vWDl~t~~-~~~~~-~~~~~---------i~~-l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l 644 (761)
.++.+. ++.|.+.+-.... ..+.+ ..... ... ..++.+....+....++.+.+.+....+. +
T Consensus 140 -ivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 -IVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred -EEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 233232 4444443222111 11111 10110 111 23444445555555556666554332211 2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCC
Q 004327 645 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 705 (761)
Q Consensus 645 ~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~ 705 (761)
. ..+++..|++||++++||.-. +|.+.|.+..-. ..+.++... ......+.|.-+..
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 1 346899999999999999988 788888876433 344444433 34556777766543
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00098 Score=76.15 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred ccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 004327 428 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 507 (761)
Q Consensus 428 ~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 507 (761)
..+.+++.|+..+.+.+|..+.... + .....+-.+.+..++.+++..++|.|+..|.|.|+-
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~------~------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEM------R------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred cCCceEEEecccceEEEEecCchhh------h------------cccccCccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 3446888888888888774433210 0 011112344566778888888999999999999997
Q ss_pred cCCCeE-----EEEe-ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCc
Q 004327 508 TESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 508 l~t~~~-----~~~l-~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~---~~~i~~~~~h~~~V~sl~fsp~g~~ 578 (761)
+....+ +..+ ..|...|+|++|++|+..|++|...|.|.+-.++.. ......+....+.|.-+++.. .+
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~ 182 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SY 182 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ce
Confidence 754321 1111 247889999999999999999999999999888761 112334444567787777763 34
Q ss_pred EEEEEe
Q 004327 579 LLCSCD 584 (761)
Q Consensus 579 llasgs 584 (761)
+|++..
T Consensus 183 LLVStl 188 (726)
T KOG3621|consen 183 LLVSTL 188 (726)
T ss_pred ehHhhh
Confidence 554443
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.0021 Score=71.78 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=121.1
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe--cc------CCcceEEEEEcC-----CC-
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 533 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l--~~------h~~~V~~v~fsp-----dg- 533 (761)
.|.++..+....++|++++.|.= -++|.|..+|.+.|.|+.....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 47788888888999999999854 49999999999999999888777552 22 345688898863 32
Q ss_pred --CEEEEEeCCCeEEEEecCC---CCceeE---EeecCCCCeEEEE-EcCCC--------------------CcEEEEEe
Q 004327 534 --SRLATSSADRTVRVWDTEN---PDYSLR---TFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 584 (761)
Q Consensus 534 --~~Lasgs~DG~I~VWDl~t---~~~~i~---~~~~h~~~V~sl~-fsp~g--------------------~~llasgs 584 (761)
-.|++|...|.+.+|.+.- +.+.+. ....+.++|..|. |+.+. +.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999998751 222221 1224566777665 32221 12444444
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCe--eEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----CCEEE
Q 004327 585 NNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 653 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~~~~~~~~~~~i--~~l~fs-----pd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~----~~I~s 653 (761)
+..|+++...+.+...... ..++ ..+++. ..+..|++...+|.|++|.+..-+.+..+.-.. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 6789999998877665544 3322 234442 245567788889999999999988887766432 23445
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEC
Q 004327 654 VCWNTSGEYLASVSDELVRVWSI 676 (761)
Q Consensus 654 l~~spdg~~LasgsDg~I~IWdl 676 (761)
.+++++|+.++-.+...+.+|.+
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEE
Confidence 67788999888777665555544
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.74 E-value=0.012 Score=65.01 Aligned_cols=221 Identities=10% Similarity=0.111 Sum_probs=110.2
Q ss_pred CCCEEEEEE-CCCeEEEEEcCC----CeEEEEecc---CC----cceEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q 004327 490 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 551 (761)
Q Consensus 490 dg~~Lasgs-~Dg~I~VWdl~t----~~~~~~l~~---h~----~~V~~v~fspdg~~Lasgs~------DG~I~VWDl~ 551 (761)
+.++|+..+ ..+.|+|+|+.+ .+..++++. +. ..-..+.-.|+|.+++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566777777 778999999873 345555542 11 22334445578888887632 2467777777
Q ss_pred CCCceeEEeecC---CCCeEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCeeeeEEecCCC
Q 004327 552 NPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQSG 608 (761)
Q Consensus 552 t~~~~i~~~~~h---~~~V~sl~fsp~g~~llasgs~--------------------Dg~I~vWDl~t~~~~~~~~~~~~ 608 (761)
+.+. ....... ...-+.+-|.|..+ +++|... ..++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6442 2232221 23345677778654 4445432 35899999999999999987532
Q ss_pred ---eeEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCC----eEEEEEcCC-----------------CCCEEEEEEcCCC
Q 004327 609 ---ATQMRFQ--PRLGRILAAAI-ENYISIL-DVETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 660 (761)
Q Consensus 609 ---i~~l~fs--pd~~~Llags~-dg~I~Iw-Dl~t~----~~i~~l~~h-----------------~~~I~sl~~spdg 660 (761)
+..+.|. |+..+-++++. ...|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 4566664 44555555444 4455444 33433 222233211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEECCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 004327 661 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 661 ~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~----------------~~I~sl~fspdg~~L~sgs~ 712 (761)
++|+.++ +|.|+.||+......+.+..+...+ +....+..|.||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999887766665543211 22367889999999988764
No 363
>PRK10115 protease 2; Provisional
Probab=97.73 E-value=0.066 Score=64.46 Aligned_cols=238 Identities=10% Similarity=-0.006 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCEEEEEECC-----CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEec
Q 004327 482 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 550 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~D-----g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D------G~I~VWDl 550 (761)
+..+.|+|||++|+.+... ..|++.|+.++..+...-.... ..++|.+|++.|+....+ ..|++|++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 3688889988764322211211 459999998877665442 36788888
Q ss_pred CCCCc-eeEEeecCCCCeE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 004327 551 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 551 ~t~~~-~i~~~~~h~~~V~-sl~fsp~g~~llasgs--~Dg~I~vWDl~--t~~~~~~~~~~~~i~~l~fspd~~~Llag 624 (761)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. .+.....+.....+..-..+. +..+++.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87631 2233333333333 2233336666665443 34679999853 344333333333332222233 3455554
Q ss_pred EcC----CeEEEEECCCCeEEEEEcCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEECCCCCCceeEEEee-cCCCc
Q 004327 625 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 694 (761)
Q Consensus 625 s~d----g~I~IwDl~t~~~i~~l~~h-~-~~I~sl~~spdg~~Lasgs-Dg~--I~IWdl~s~~~~~~i~~l~-~~~~~ 694 (761)
+.. ..|...++........+..+ . ..|..+.+..+ .++++.. ++. +++++..+. .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 442 24555555522112233334 3 36788888733 3344444 664 455554322 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CcEEEEECCCCcEE
Q 004327 695 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 727 (761)
Q Consensus 695 I~sl~fs--pdg~-~L~sgs~d---g~I~IwDl~~~~~~ 727 (761)
+..+.++ +++. .++..++. +.++.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3444 33333332 37889998876543
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.029 Score=63.26 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-------ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-------~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
+.|.++.|+.+. .|++...||.+++||+.... ...+ .-....|..+.+..+|-.+++ .++.|.+..-..
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence 789999999865 55566789999999986333 1111 111222333344435533333 344444432211
Q ss_pred CCceeEEeecCCC---------CeEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE
Q 004327 553 PDYSLRTFTGHST---------TVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 553 ~~~~i~~~~~h~~---------~V~s-l~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Ll 622 (761)
.....+.+..-.. .+.. ..++.+.. +.+....++.+.+.+-..... +...+++..++++|++++++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEE
Confidence 1111111110000 0000 12333322 222333345555443322111 22346799999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEE
Q 004327 623 AAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWS 675 (761)
Q Consensus 623 ags~dg~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IWd 675 (761)
....+|.+.|++.+-.+....+... ......+.|.-+...++.- +..|.++.
T Consensus 233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG 285 (410)
T ss_pred EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence 9999999999987766666665543 3456677886554333222 33444443
No 365
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.098 Score=54.73 Aligned_cols=270 Identities=10% Similarity=0.042 Sum_probs=149.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~--h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
+-+..+.|+ +.+...+..+.-++|+|+.+......+.. -.+.-.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566776 45778888888999999987544333221 1133344444 57898888867678889998876543
Q ss_pred E--EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 558 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 558 ~--~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~---~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
. .+.........++.+- ...+.+..|+-+.+.|+.+.. .+........+.++..+++ +.++...+--+.+
T Consensus 163 lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 3333444456777773 344455668889999997643 3444445456777777665 4444444556677
Q ss_pred EECCCCeEEEEEcC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 633 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 633 wDl~t~~~i~~l~~-h~~~I~sl-~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
.|..+.+....+.. ....+.++ .|.-.+++..... +.-+-+-|+.+.........+......-..+.. .+.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEe
Confidence 77776653333322 12222222 2333455555555 556667777654332222222222212222222 2333333
Q ss_pred EEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 710 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...+ ...+.|....+.. ...+-...+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 4444454443333 1222223344455555566888999999999986
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.0048 Score=73.66 Aligned_cols=140 Identities=9% Similarity=0.116 Sum_probs=97.9
Q ss_pred CEEEEE-eCCCeEEEEecCCCCceeEEeecCCCC-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCe--eee---
Q 004327 534 SRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG--- 601 (761)
Q Consensus 534 ~~Lasg-s~DG~I~VWDl~t~~~~i~~~~~h~~~-V~sl~fsp-----~g~~llasgs~Dg~I~vWDl~t~~--~~~--- 601 (761)
+.|+.. .....|+-.|++.++. +..+..|... |..++-.. .....| .|-.+..|..||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3457899999999875 7777766643 55554321 112233 56668899999998532 331
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEC
Q 004327 602 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 676 (761)
Q Consensus 602 -~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl 676 (761)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2333445677776655 7899999999999999543333444556678999999999999999999999999886
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.015 Score=62.75 Aligned_cols=220 Identities=11% Similarity=0.104 Sum_probs=131.3
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee--
Q 004327 485 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 561 (761)
Q Consensus 485 lafSpdg~~-Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~-- 561 (761)
-.|.++... +.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++.. -+.+++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEeccc
Confidence 356666664 444456788888988765433 221 2233455555545555665533 366777755443 12211
Q ss_pred --cC-CCCeEEEEEcCCCCcEEEEEe-----C-----CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004327 562 --GH-STTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 562 --~h-~~~V~sl~fsp~g~~llasgs-----~-----Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~d 627 (761)
+. ....+.+...|+|..++-+-+ . -|.|+.+|. .+..++.+.. -...+.++|+||++.++++...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 11 244667888898765553333 1 133444444 3555555443 3445789999999888888774
Q ss_pred -CeEEEEECCC--C----e-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 628 -NYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 628 -g~I~IwDl~t--~----~-~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
+.|+.|++.. + . ....+....+..-.++...+|.+.+++. +| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 7888888762 1 1 1222223455667788888998886554 44 89999987 5 566666666567777
Q ss_pred EEEe-CCCCEEEEEEcCC
Q 004327 698 CVFH-PTFPSLLVIGCYE 714 (761)
Q Consensus 698 l~fs-pdg~~L~sgs~dg 714 (761)
++|- ++.+.|++.+...
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 7774 4456666655543
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.0079 Score=70.67 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=113.7
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe------CCC--eEEEEecCCCCceeEEeecCCCCeEEEE
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 571 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs------~DG--~I~VWDl~t~~~~i~~~~~h~~~V~sl~ 571 (761)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|.+++.. ......+.+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 56555543222222222223334688999999999887765 244 44555543 222222232 2378899
Q ss_pred EcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCC
Q 004327 572 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 637 (761)
Q Consensus 572 fsp~g~~llasgs-----------~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I---wDl~t 637 (761)
|+|+|..+.+... ..+.+.+.+++.+.... .....|..+.|+|||.+++... ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999765554432 12344444555444333 3346799999999999988876 577777 45444
Q ss_pred CeEEE----EEcC-CCCCEEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 638 QVCRL----KLQG-HKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 638 ~~~i~----~l~~-h~~~I~sl~~spdg~~LasgsDg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
+.... .+.. -...+.++.|..++.+++...++ .+...++.... .....-......+..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 1222 23346889999999976554444 34444444221 111011112345566665553 46666
Q ss_pred EcCCcEEE
Q 004327 711 GCYETLEL 718 (761)
Q Consensus 711 s~dg~I~I 718 (761)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664433
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.55 E-value=0.095 Score=62.56 Aligned_cols=272 Identities=13% Similarity=0.131 Sum_probs=158.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEE--cCCCeEEEE--eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd--l~t~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
..|.-.+|-.|..+|.++..||.+.-|. ..++..-.. ..-...++.--.|+..+..-+.+..|.-..+|..+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 3455666766788999999999987764 445443322 122345666667776655544455566666665442 32
Q ss_pred eeEEeecCCCCeEEEE-EcC-CCCcEEEEEeCCCcEEEEECCCCe--eeeEEecCCCeeEEEEecCCCEEEEEEc-----
Q 004327 556 SLRTFTGHSTTVMSLD-FHP-SKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI----- 626 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~-fsp-~g~~llasgs~Dg~I~vWDl~t~~--~~~~~~~~~~i~~l~fspd~~~Llags~----- 626 (761)
....+. -..+..+| |+. .....++++. .+.+++..++.-. -++++........+++.+....+.+.+.
T Consensus 663 v~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 222111 11222222 222 2234454554 5678887776422 2344556667788888875444444332
Q ss_pred ------C---CeEEEEECCCCeEEEEEcC-CCC---CEEEEEEcCC-CCEEEEEe-----------CCeEEEEECCCCCC
Q 004327 627 ------E---NYISILDVETQVCRLKLQG-HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 681 (761)
Q Consensus 627 ------d---g~I~IwDl~t~~~i~~l~~-h~~---~I~sl~~spd-g~~Lasgs-----------Dg~I~IWdl~s~~~ 681 (761)
+ ..++++|-++.+.+...+- ... .|.++.|..| +.++++|. .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 1367777777665543321 112 3455558777 67777764 24678888776544
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
.+.+++....+ .+.++..- +|+ +.++-...|++|++.+.+.+ .-..|..++..+...-.+..++.|..=+.|.+
T Consensus 820 L~~v~e~~v~G-av~aL~~f-ngk--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKG-AVYALVEF-NGK--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeecc-ceeehhhh-CCe--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 45555544333 33333321 344 44455568999999988766 44467888999999888999999887666554
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0004 Score=78.34 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=78.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceE-EEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~-~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 47789999999999999999999999988 788889987888887 9999999999999999999999999987753333
Q ss_pred eecCCCCeEEEEEcC
Q 004327 560 FTGHSTTVMSLDFHP 574 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp 574 (761)
...-...|.++.|.+
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 333456677777763
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.50 E-value=0.037 Score=60.72 Aligned_cols=241 Identities=11% Similarity=0.108 Sum_probs=121.1
Q ss_pred EcCCCeEEEEeccCCcceE-----EEEEcCCCCEEEEEe-CCC--eEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCC
Q 004327 507 CTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSS-ADR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 577 (761)
Q Consensus 507 dl~t~~~~~~l~~h~~~V~-----~v~fspdg~~Lasgs-~DG--~I~VWDl~t~~~~i~~~~~h~-~~V~sl~fsp~g~ 577 (761)
|..||..+..+..+..... .=+|.+||+.|+.++ .|| .+.+.|+.+++ +..+..+. .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 6677777777754443332 235677887665554 455 56666777654 55555543 2233567778876
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEe--cCCCEEEEEEc-----------------------CCeEE
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI-----------------------ENYIS 631 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~-~l~fs--pd~~~Llags~-----------------------dg~I~ 631 (761)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++.. +++.. ...|.
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 666544 35689999999988777777666544 34553 34444 33331 12477
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCC-----eEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCC
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~LasgsDg-----~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg 704 (761)
..|+.+++....+. ....+..+-|+|.. .+|+.|-+| .-+||-+++... ...++.- .....+.-=-|.+||
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDG 249 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCC
Confidence 77888887665555 55678889999965 455555544 247887765322 1222221 122334444699999
Q ss_pred CEEEEEEc-----CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 705 PSLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 705 ~~L~sgs~-----dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
..|+..+. +..|.-+|+.+++...+..- .....+-.++|++++|-=+.|
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 88776544 22577778888765533222 234456667888877754444
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.43 E-value=0.018 Score=58.25 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCC-cEEEEEeCCCcEEEEECCC--CeeeeEEe----
Q 004327 533 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVFK---- 604 (761)
Q Consensus 533 g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp-~g~-~llasgs~Dg~I~vWDl~t--~~~~~~~~---- 604 (761)
+.++.+--..|.|+-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||-.. -...+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 44556655677788899987664333444322 23333321 122 3445555555566677432 22222211
Q ss_pred --cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--------CCEEEEEEcCCCCEEEEEe--CCeEE
Q 004327 605 --CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVR 672 (761)
Q Consensus 605 --~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~--------~~I~sl~~spdg~~Lasgs--Dg~I~ 672 (761)
.......-..+|+|++ +.|.....-.++....+....-+.+|. .--+.++|+.+.+.++... +-.|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1234566778899877 455432111122222222222222232 2235688998887666555 66787
Q ss_pred EEE--CCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeC
Q 004327 673 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 743 (761)
Q Consensus 673 IWd--l~s~~~--~~~i~~l~~----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafsp 743 (761)
-|| ..++.. ...+..+.. ..-....+++..+|+..+++-..++|..+|..+++.+ ++.-....|++++|--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 788 555432 223333332 1112234566778887777777779999999999988 6666688899999974
Q ss_pred C
Q 004327 744 V 744 (761)
Q Consensus 744 d 744 (761)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
No 373
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.41 E-value=0.087 Score=55.06 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=124.2
Q ss_pred eEEEEecc-CCcceEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 512 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 512 ~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG--~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
+.+.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34445532 223345788877777777777665 7999999998753333332333334555553 456666778999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----CCCEEEEEEcCCCCEE
Q 004327 589 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 663 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h-----~~~I~sl~~spdg~~L 663 (761)
..+||..+.+.+..+...+.-..++ .++..|+.......|+++|.++.+....+.-. -..++-+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877777777 55678888888899999999987666655432 1245667775 66655
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 004327 664 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 664 asgs-Dg~I~IWdl~s~~~~~~i~~l~~---------------~~~~I~sl~fspdg~~L~sgs~d 713 (761)
|-.- ...|...|..++ .++..+.. .....+.++|+|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5555 778888899887 44443221 13457899999998888777753
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.41 E-value=0.0065 Score=72.58 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=91.8
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCceeEEE---eecCCCce
Q 004327 626 IENYISILDVETQVCRLKLQGHKNQ-VHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHE---LSCTGNKF 695 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~~sp------dg~~LasgsDg~I~IWdl~s~~~~~~i~~---l~~~~~~I 695 (761)
....|+-.|++.|+.+..+..|... |..++-.. ....++.-+++.+..||.+-... +++.. .-.....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCCc
Confidence 3578999999999999999887654 55554321 22345555588999999986431 23321 11345668
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
.|++-+.+|. |++|+.+|.|++||--..+.. .+.+...+|.+|..+.||++|++.+..-
T Consensus 581 s~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 581 SCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred eEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 8888887774 999999999999995433322 5557789999999999999888776543
No 375
>PRK10115 protease 2; Provisional
Probab=97.39 E-value=0.19 Score=60.63 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=106.8
Q ss_pred cceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 004327 522 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 591 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-----g~I~v 591 (761)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+- -..++|.++++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778999999988876432 368889998765322223221 15699999988888776533 36888
Q ss_pred EECCCC--eeeeEEecCCC-ee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEEcCCCCCEEEEEEcCCCCE
Q 004327 592 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 662 (761)
Q Consensus 592 WDl~t~--~~~~~~~~~~~-i~-~l~fspd~~~Llags~---dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~~spdg~~ 662 (761)
+++.++ +....+..... .. .+..+.++.++++.+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 22 2233447777766554 4578888853 3332222221222222222 223333
Q ss_pred EEEEe-CC---eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--cEEEEECCCCcEEEE
Q 004327 663 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 729 (761)
Q Consensus 663 Lasgs-Dg---~I~IWdl~s~~~~~~i~~l~~~--~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l 729 (761)
++... +. .|...++.... ....+..+ ...+..+.+..+ ..+++...++ .|+++|..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444444211 11222223 236777777733 3344444455 566667655444433
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.028 Score=58.45 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=137.7
Q ss_pred EEEEcCCC-CEEEEEECCCe-EEEEEcCCCeEEEEeccCCcc--eEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCC
Q 004327 484 SCHFSPDG-KLLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 554 (761)
Q Consensus 484 ~lafSpdg-~~Lasgs~Dg~-I~VWdl~t~~~~~~l~~h~~~--V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~ 554 (761)
.|+|+|.- +-++.+-.-|+ ..++|........++...++. --.=.|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 47788743 34666665554 467888877665554322211 1123699999999877554 789999999765
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEe------CC-----------CcEEEEECCCCeeeeEEecC-----CCeeEE
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NN-----------SEIRYWSINNGSCAGVFKCQ-----SGATQM 612 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs------~D-----------g~I~vWDl~t~~~~~~~~~~-----~~i~~l 612 (761)
..+-.+..|.-.-..+.|.+||..+++..+ .- -.+.+.|..++..+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 556677778777788999999987776543 00 12344454455554443322 246667
Q ss_pred EEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCC
Q 004327 613 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 678 (761)
Q Consensus 613 ~fspd~~~Llags~dg~-----I~IwDl~t~~~i~~l~~-------h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s 678 (761)
+..+++..++.+-..|- -.+=-...++.+.-+.. ....|-+|+.+.+..+++..+ .+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 77777554444433321 11111122333322221 224677888887777777777 55889999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
+ ..+.... -..++-+-+...-+++.+..|.+.+|.-
T Consensus 312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred C---cEEeccc----ccccccceeccCceEEecCCceEEeccc
Confidence 8 3332211 1122233444445888888888888743
No 377
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.37 E-value=0.22 Score=56.01 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=145.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCe-----EEEEeccCCcceEEEEEcC-----CCCEEEEEeCCCeEEEEecCCCC------
Q 004327 491 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------ 554 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~-----~~~~l~~h~~~V~~v~fsp-----dg~~Lasgs~DG~I~VWDl~t~~------ 554 (761)
...|++|+.+|.++||+..... .+.+. .-..+|..|..-. +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999875432 11111 2346787777643 2234444 466778888873211
Q ss_pred --ceeEEeecCC--CCeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 004327 555 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 555 --~~i~~~~~h~--~~V~sl~fsp----~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~ 626 (761)
..+.....|. .....+++-| .+..+++.=+.||.+.+|+-+.....+.+...--...+.|.+..+.|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 2334444443 2334444433 2357888999999999999875544444443233456888888899999999
Q ss_pred CCeEEEEECCC--------------------Ce---EEEEEcCCCCCEEEE---EEcCCCCEEEEEeCCeEEEEECCCCC
Q 004327 627 ENYISILDVET--------------------QV---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGS 680 (761)
Q Consensus 627 dg~I~IwDl~t--------------------~~---~i~~l~~h~~~I~sl---~~spdg~~LasgsDg~I~IWdl~s~~ 680 (761)
+..|..|.... ++ +-+++. -...+..| .++.....|++-++..+.+.+-. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 99998886421 00 011111 11223333 33334445555666677777653 2
Q ss_pred CceeEEEeecCCCceEEEEEe----CCC---CEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEE---eCCCCEEEE
Q 004327 681 KGECIHELSCTGNKFHSCVFH----PTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA---STVNGMVAS 750 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fs----pdg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slaf---spdg~~LaS 750 (761)
.......+... +...+.|. .++ ..+++++.++.+.||.=. +++.--.......++.. ..-...|++
T Consensus 272 ~l~~~krLd~~--p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRLDYN--PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEecCCc--eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 22333333222 22122222 122 248899999999999632 22211111222223333 223458888
Q ss_pred EECCCeEEE
Q 004327 751 ASHDKCVKI 759 (761)
Q Consensus 751 gs~DG~I~I 759 (761)
-+.||.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 888998865
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0069 Score=67.37 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=96.4
Q ss_pred CCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCceeEEE
Q 004327 617 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 617 d~~~Lla-gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~--------~LasgsDg~I~IWdl~s~~~~~~i~~ 687 (761)
+.+.|+. +.....|+-.|++.|+.+..+.-+.. |+-+.+.|+.+ .|+.-+|..|.-||.+-.... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 3444443 44457899999999999999987766 77778888754 355556889999999854331 2222
Q ss_pred eec----CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 688 LSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 688 l~~----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
... ....+.|.+-..+| +|++|+.+|.|++||....... .+.+...+|..|..+.+|++|+..+..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 111 24556666666666 5999999999999997333222 677888999999999999988766654
No 379
>PRK13684 Ycf48-like protein; Provisional
Probab=97.30 E-value=0.28 Score=53.80 Aligned_cols=269 Identities=8% Similarity=-0.002 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe----ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l----~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
...+++|+|..+.+-+|+|. ++.|..= .+.++.-... ......+.++.|.++ ..+++ +..+.| |..+++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence 45789999986666666664 4543321 1222222111 112334778888643 34444 445543 3333332
Q ss_pred ceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 555 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 555 ~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
....... ...+....+..... ..+++.+ ..|.|.. ..+.++.-..+. ....+..+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 2222221 11112222222222 2233333 3443322 112222222111 23457888888875 4556666676
Q ss_pred EEEE-ECCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 004327 630 ISIL-DVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 630 I~Iw-Dl~t~~~i~~-l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l-~~~~~~I~sl~fspdg~~ 706 (761)
++.- |-. ++.-.. ...-...++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++.
T Consensus 195 i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 195 FYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred EEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 5543 222 221111 223446789999999999888877886653233333222221110 11224577888998776
Q ss_pred EEEEEcCCcEEEEECCCCcEEE-E---ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 707 LLVIGCYETLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~~~~~-l---~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+++++.+|.|. +....++.-. . ..-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 273 ~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 56666777654 3445444432 2 12224577888876666555 55678876653
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.28 E-value=0.033 Score=65.57 Aligned_cols=185 Identities=12% Similarity=0.050 Sum_probs=111.2
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC----------
Q 004327 565 TTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---------- 627 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasgs-----~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d---------- 627 (761)
..+.+.+++|++..++++.. .| ..|++++.. +.. ..+......+...|+|+++.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 46788999999988887762 23 356666653 222 333333447889999998877776533
Q ss_pred --CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEC---CCCCCcee--EEEeec-CCCceEEEE
Q 004327 628 --NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI---GSGSKGEC--IHELSC-TGNKFHSCV 699 (761)
Q Consensus 628 --g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl---~s~~~~~~--i~~l~~-~~~~I~sl~ 699 (761)
+.+++.+++.++... .....|..+.|+|||..|+...++.|++--+ ..+. ... ...+.. ....+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccce
Confidence 234444444433322 2356799999999999999888888777333 2331 111 111222 233467889
Q ss_pred EeCCCCEEEEEEcCC--cEEEEECCCCcEEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 700 FHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 700 fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~--h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
|..++. |+++..++ .++..++.......+.. ....+.+|+-+++ .|+.+..+|.+.
T Consensus 504 W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 504 WRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred EecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 999998 45655555 35445555433222222 3567778877763 455566677554
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.26 E-value=0.048 Score=61.88 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=91.0
Q ss_pred CeEEEEEcCC----CCEEEEEECCCeEEEEEcC-----CCeEEEEecc-C--Ccc--eEEEEEcCCCCEEEEEeCCCeEE
Q 004327 481 KVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-H--TQW--ITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 481 ~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~-----t~~~~~~l~~-h--~~~--V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
.|..++|.|- ...|+.....+.|.||-+. ..+.+..-.. . .-+ -..+.|+|....|++-.....-.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 3889999984 3345556678999999764 2232222111 1 111 23578999988888777666556
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-----eeEEecCCCeeEEEEecCCCEE
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~-----~~~~~~~~~i~~l~fspd~~~L 621 (761)
++++......++.-....+.|.|.+|..||.+++++.+..=.-++||-..... -..|...+.|.++.-.-+ ..+
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqV 216 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQV 216 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ceE
Confidence 67776555445444456788999999999999998887777889998654322 123444455555554443 334
Q ss_pred EEEE
Q 004327 622 LAAA 625 (761)
Q Consensus 622 lags 625 (761)
++++
T Consensus 217 AvaT 220 (671)
T PF15390_consen 217 AVAT 220 (671)
T ss_pred EEEe
Confidence 4444
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.015 Score=68.35 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=119.6
Q ss_pred CCCEEEEEECC------CeEEEEEcCCCeEE--EEeccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEecCCCCc
Q 004327 490 DGKLLATGGHD------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDY 555 (761)
Q Consensus 490 dg~~Lasgs~D------g~I~VWdl~t~~~~--~~l~~h~~~V~~v~fspdg~~Lasgs~D------G~I~VWDl~t~~~ 555 (761)
.+.+++.|+.+ ..|..||..+..-. ..+. +...-.++++. ++.+.++|+.| .++..||..++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45566677666 36778887765332 2222 22223344444 45788888888 3577888877653
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEecCCCeeEEEE-ecCCCEEEEEEcCC-
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN- 628 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg-----~I~vWDl~t~~~~~~~~~~~~i~~l~f-spd~~~Llags~dg- 628 (761)
.....-...-..+....-++.+.++|+.|| +|-.||..+.+....-........... .-++..+++|+.++
T Consensus 362 --~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 --TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred --eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 222221111122222222467888888886 477788877654443322222222222 23445566666443
Q ss_pred -----eEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCce
Q 004327 629 -----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 629 -----~I~IwDl~t~~~i~--~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
.+..||..+.+-.. .+..-.... .++. -++.+++.|+ |+ +|..||..+.. ...+.........+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCccccccc
Confidence 57888888764322 222111111 2333 2555666666 55 47888887642 12222222222222
Q ss_pred EEEEEeCCCCEEEEEEcCC-----cEEEEECCCCcEE
Q 004327 696 HSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 727 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~ 727 (761)
.. ..-++...++|+.|+ +|..||..+++..
T Consensus 517 g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 GV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 222555667777776 6888887776654
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.02 Score=67.31 Aligned_cols=189 Identities=7% Similarity=0.009 Sum_probs=96.9
Q ss_pred CCCEEEEEeCC------CeEEEEecCCCCceeEEeecCCCC--eEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCe
Q 004327 532 SLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGS 598 (761)
Q Consensus 532 dg~~Lasgs~D------G~I~VWDl~t~~~~i~~~~~h~~~--V~sl~fsp~g~~llasgs~Dg-----~I~vWDl~t~~ 598 (761)
++.+++.|+.+ ..+..||..+... .....-..+ -.+++.. ++.+.+.|+.++ .+.+||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56677777754 3477888876543 222211111 1122222 246777777653 48889988765
Q ss_pred eeeEEecCCCeeE-EEEecCCCEEEEEEcC-----------------------CeEEEEECCCCeEEEEEcCCCCCEE-E
Q 004327 599 CAGVFKCQSGATQ-MRFQPRLGRILAAAIE-----------------------NYISILDVETQVCRLKLQGHKNQVH-S 653 (761)
Q Consensus 599 ~~~~~~~~~~i~~-l~fspd~~~Llags~d-----------------------g~I~IwDl~t~~~i~~l~~h~~~I~-s 653 (761)
....-....+... ....-++..+++|+.+ ..+..||.++.+-...-.-...... +
T Consensus 379 W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 5432222222111 1112245556666644 2477888876532211111111111 2
Q ss_pred EEEcCCCCEEEEEe-CC------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--cEEEEECCCC
Q 004327 654 VCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTEN 724 (761)
Q Consensus 654 l~~spdg~~Lasgs-Dg------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~~~ 724 (761)
++ .-++++.+.|+ ++ .+..||..+......+..+.........+++ +++..++|+.++ .+..||..++
T Consensus 459 ~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 459 VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 22 23456556565 32 4678888762223444444333332333333 667778888887 7888998887
Q ss_pred cEE
Q 004327 725 KTL 727 (761)
Q Consensus 725 ~~~ 727 (761)
+..
T Consensus 536 ~W~ 538 (557)
T PHA02713 536 EWN 538 (557)
T ss_pred ccc
Confidence 655
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.22 E-value=0.25 Score=53.13 Aligned_cols=267 Identities=9% Similarity=0.076 Sum_probs=123.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEc-CCCeEEEEe--ccC---CcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl-~t~~~~~~l--~~h---~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
...+.+|.|..+..-+|+|. .+.| +.. +.++.-... ... .-...+|.|..+ ..+++ +..+. .+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecCC
Confidence 34799999996555566654 4543 333 222221111 111 224667787643 34444 44553 3333333
Q ss_pred CCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcC
Q 004327 553 PDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 553 ~~~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~d 627 (761)
+. ....+. .-.+....+....++ ..++.+ ..|.|+. ..+.++.-.... ..+.+..+..++++.+++++...
T Consensus 90 G~-tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GK-TWERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TS-S-EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CC-CcEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 33 233221 122334444444443 333333 3444332 222233222222 23557778888898776666555
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEE----eecCCCceEEEEEeCC
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPT 703 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~----l~~~~~~I~sl~fspd 703 (761)
..+.-||.-...-...-..-...|.+|.|.|++.+.+.+..+.|++=+.... ...... .......+..++|.++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCC
Confidence 5666787653221122222467899999999998888777888888772211 011111 2223445889999988
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEEEEc----cCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 704 FPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~~l~----~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+. +.+++..|.| +...+.++.-... .-...++.|.|..+.+-+| .+.||.|--|
T Consensus 244 ~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NE-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp S--EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CC-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 76 5556666655 4455666544222 3355688899876544444 5678887655
No 385
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.18 E-value=0.31 Score=53.39 Aligned_cols=232 Identities=14% Similarity=0.157 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE---EEEe----ccCCcceEEEEEcCC---CCEEEEEeC-C--------
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 542 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~---~~~l----~~h~~~V~~v~fspd---g~~Lasgs~-D-------- 542 (761)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987665 5699999999 44433 2232 234456899999994 334433332 1
Q ss_pred CeEEEEecCCCC-------ceeEEeec---CCCCeEEEEEcCCCCcEEEEEeCC------------CcEEEEECCCCee-
Q 004327 543 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 599 (761)
Q Consensus 543 G~I~VWDl~t~~-------~~i~~~~~---h~~~V~sl~fsp~g~~llasgs~D------------g~I~vWDl~t~~~- 599 (761)
..|.-|.+.... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 244445554331 11122222 234456799999984444444321 233333322 110
Q ss_pred ------------eeEEe-cCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECC--------C------C----------
Q 004327 600 ------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q---------- 638 (761)
Q Consensus 600 ------------~~~~~-~~~~i~~l~fspd~~~Llags~--dg--~I~IwDl~--------t------~---------- 638 (761)
...+. .......++|+|..+.|+++.. ++ .|.+..-- . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 1123467899998666666553 22 33332210 0 0
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 004327 639 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 639 ---~~i~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l-~~~~~~I~sl~fspdg~~ 706 (761)
.++..+..| ..+..+.|.. .|.+|++.. .+.|....+...........+ ......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334433 5566777764 344566555 668888887644322222222 234447899999999987
Q ss_pred EEEEEcCCcEE
Q 004327 707 LLVIGCYETLE 717 (761)
Q Consensus 707 L~sgs~dg~I~ 717 (761)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777764
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.05 E-value=0.0015 Score=44.74 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 507 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 507 (761)
.+..+..|...|++++|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.05 E-value=1 Score=54.28 Aligned_cols=270 Identities=11% Similarity=0.077 Sum_probs=150.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEE-EEEcCC--CCEEEEEeCCCeEEEEecCCCC-
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS--LSRLATSSADRTVRVWDTENPD- 554 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~-v~fspd--g~~Lasgs~DG~I~VWDl~t~~- 554 (761)
+.++.--.|+..++.-+.+..|+-..+|.... +.+.+--.-+ .+.. +.|+.+ ...|+++. .+.+++.-++.-.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk 705 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQK 705 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchhh
Confidence 34555556666555444444566666665433 3332211111 1222 223322 33455554 4457776665322
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCeeeeEEecCC-----CeeEEEEe
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCAGVFKCQS-----GATQMRFQ 615 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D--------------g~I~vWDl~t~~~~~~~~~~~-----~i~~l~fs 615 (761)
..+++.. -......+++.+.. .++.+.+.. ..++++|-++.+.+...+... .+.++.|.
T Consensus 706 l~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~ 783 (1096)
T KOG1897|consen 706 LHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFT 783 (1096)
T ss_pred cceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeec
Confidence 2234433 23445677777642 333333211 246777777766665444322 24445587
Q ss_pred cC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 004327 616 PR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 682 (761)
Q Consensus 616 pd-~~~Llags~----------dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~ 682 (761)
.| +.++++|+. .|.|.||.......+..... -.+.+.+++.- +|+++| +-...|++|++.+.
T Consensus 784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~In~~vrLye~t~~--- 858 (1096)
T KOG1897|consen 784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-GINQSVRLYEWTTE--- 858 (1096)
T ss_pred CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-ecCcEEEEEEcccc---
Confidence 77 566666653 47888888776333322221 23445555432 455544 44778999999876
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE--ECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
+.++.-..+...+..+.+.-.+..+++|.--+.+.+. +-..+... .-..+..+.+++.+-.+.. ++.+..+|.++
T Consensus 859 ~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf 937 (1096)
T KOG1897|consen 859 RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLF 937 (1096)
T ss_pred ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEE
Confidence 4455545567788899999999999999998866654 44444454 3446788899998865554 44455677666
Q ss_pred E
Q 004327 759 I 759 (761)
Q Consensus 759 I 759 (761)
+
T Consensus 938 ~ 938 (1096)
T KOG1897|consen 938 T 938 (1096)
T ss_pred E
Confidence 4
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.04 E-value=0.35 Score=50.67 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEE-cCCeEEEEECCCCeE
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAA-IENYISILDVETQVC 640 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg--~I~vWDl~t~~~~~~~~~~~~i--~~l~fspd~~~Llags-~dg~I~IwDl~t~~~ 640 (761)
....+.|..++ .++-+.+.-| .|+.+|+.+++.......+... ..++... +.|+.-+ .++...+||..+.+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 35577785554 5666766554 7999999999988877766553 3344443 4455544 589999999999998
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCcE
Q 004327 641 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 641 i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~---~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
+.++. ..+.=..++ .|+..|+.+. ...|+++|..+......+... ... ..++.+.|. +|...+=.-....|
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 88876 345667777 3455555444 778999998776433333222 122 234556665 45444444455688
Q ss_pred EEEECCCCcEEEEc-------------cC---CCCeeEEEEeCCCCEEEEEE
Q 004327 717 ELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 717 ~IwDl~~~~~~~l~-------------~h---~~~V~slafspdg~~LaSgs 752 (761)
...|..+|++.... .+ ....+.|||.|....|...+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999887321 01 35689999999877555544
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.024 Score=66.56 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=113.3
Q ss_pred CCEEEEEeCC------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeee
Q 004327 533 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCA 600 (761)
Q Consensus 533 g~~Lasgs~D------G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D------g~I~vWDl~t~~~~ 600 (761)
+.++++|+.+ ..+..||..++......-......-.++++.. +.++++|+.| ..+..||..+.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3445555554 35778888776432211111333345555554 4778888888 36788898877754
Q ss_pred eEEecCCCeeEEEE-ecCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCCCEEEEE-EcCCCCEEEEEe-CC---
Q 004327 601 GVFKCQSGATQMRF-QPRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVC-WNTSGEYLASVS-DE--- 669 (761)
Q Consensus 601 ~~~~~~~~i~~l~f-spd~~~Llags~dg-----~I~IwDl~t~~~i~~l~~h~~~I~sl~-~spdg~~Lasgs-Dg--- 669 (761)
..-.....-..... .-++..+++|+.|| .|..||.++.+-...-. ......+.. ..-+|.+.++|+ ++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 43222222112222 22446667777776 57888887754222111 111222221 123566666666 43
Q ss_pred ---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----cEEEEECCCCcEEEEccCCCCeeEEEE
Q 004327 670 ---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA 741 (761)
Q Consensus 670 ---~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~~V~slaf 741 (761)
++..||..+.. ...+..+........ .-.-++...++|+.|+ +|..||..+.+...+..-......+..
T Consensus 442 ~l~sve~YDP~t~~-W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 442 CLNSVECYDPETNT-WTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccceEEEEcCCCCc-eeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 57888887642 122222222222222 2223556667777665 488899988877744322222222211
Q ss_pred -eCCCCEEEEEECCCe
Q 004327 742 -STVNGMVASASHDKC 756 (761)
Q Consensus 742 -spdg~~LaSgs~DG~ 756 (761)
.-++...++|+.||.
T Consensus 519 ~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEECCEEEEEecccCc
Confidence 124667788888864
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.14 Score=53.89 Aligned_cols=163 Identities=12% Similarity=0.148 Sum_probs=107.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+.+-+..|.++.|+|+.+.|++......-.||=...|..+.++.- .-.....|.|..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344455599999999999999888888888888788898887742 1223456788888888888888899998887755
Q ss_pred Ccee---------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee--eEEec--------CCCeeEEE
Q 004327 554 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA--GVFKC--------QSGATQMR 613 (761)
Q Consensus 554 ~~~i---------~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~--~~~~~--------~~~i~~l~ 613 (761)
...+ ......+.....++|.|....+++ +-+..-+.||.+.... .+ ..... -..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211 111222456788999999777764 4445566666655322 11 11100 13467788
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCC
Q 004327 614 FQPRLGRILAAAI-ENYISILDVETQ 638 (761)
Q Consensus 614 fspd~~~Llags~-dg~I~IwDl~t~ 638 (761)
|++..+.+++-+. ++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8887666666555 566777776644
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.01 E-value=0.19 Score=52.82 Aligned_cols=188 Identities=10% Similarity=0.026 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCCcEEEEE--eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE-ECCCCeE-E
Q 004327 566 TVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL-DVETQVC-R 641 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasg--s~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~Iw-Dl~t~~~-i 641 (761)
.+.+.++++++..+.+.. .....++++.. +...........+....|++++...++...+....++ +...+.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999998887777 33445555544 3333333233578888999996555555555555555 3333321 1
Q ss_pred EEEcC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 642 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 642 ~~l~~--h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~------~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
..+.. -...|..+.++|||..++... ++.|.+--+...... ..+.........+..+.|.+++..++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 12221 122899999999999887766 567777766433222 111222233567899999999987766
Q ss_pred EEcCCc-EEE-EECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 710 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 710 gs~dg~-I~I-wDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
+...+. +.. +....+....+..-...+..++...+...++..+.++
T Consensus 183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~ 230 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGG 230 (253)
T ss_pred eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCc
Confidence 665552 333 4444443333322223333333334444444443333
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.95 E-value=0.0025 Score=43.65 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.2
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
++....+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.95 E-value=0.025 Score=51.11 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=67.8
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 482 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 482 V~~lafSp---dg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-.... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee--e
Confidence 56666655 43 479999999999999854 566667544 45777776655 679999999999999865422 2
Q ss_pred EEeecCCCCeEEEEEc---CCCCcEEEEEeCCCcEE
Q 004327 558 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fs---p~g~~llasgs~Dg~I~ 590 (761)
+ .+ .+..++++++. .+|..-|++|-.+|.|-
T Consensus 76 R-iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 R-IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 22 22336666554 34445666777777664
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.86 E-value=0.22 Score=55.86 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=55.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEE---EEcC-----CCeEEEEec---cCC--cceEEEEEcC-----------CCCEEEEE
Q 004327 484 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 539 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~V---Wdl~-----t~~~~~~l~---~h~--~~V~~v~fsp-----------dg~~Lasg 539 (761)
+++.+|++++||.+..+..|.+ |+.. ......... .+. ..|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988777666 6431 111221111 121 5677777643 45689999
Q ss_pred eCCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 004327 540 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 573 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fs 573 (761)
..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999875 332 33223366677766654
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.85 E-value=1.2 Score=49.83 Aligned_cols=220 Identities=9% Similarity=0.052 Sum_probs=104.0
Q ss_pred CCCEEEEEe-CCCeEEEEecCCCCce---eEEeec---CC----CCeEEEEEcCCCCcEEEEE--eC----CCcEEEEEC
Q 004327 532 SLSRLATSS-ADRTVRVWDTENPDYS---LRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 594 (761)
Q Consensus 532 dg~~Lasgs-~DG~I~VWDl~t~~~~---i~~~~~---h~----~~V~sl~fsp~g~~llasg--s~----Dg~I~vWDl 594 (761)
+.++|+..+ ..+.|+|+|+.+.-.. .+.+.. +. ..-..+..-|+|+ +++++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 355777766 6789999999843221 222221 11 1122333446654 44443 22 256888888
Q ss_pred CCCeeeeEEecCCC----eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEcCCCC-
Q 004327 595 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 649 (761)
Q Consensus 595 ~t~~~~~~~~~~~~----i~~l~fspd~~~Llags~--------------------dg~I~IwDl~t~~~i~~l~~h~~- 649 (761)
++.+.......... ...+-|.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88777776664332 466888898888887642 34799999999999988875432
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEECCCCCCce--eEEEeecC-----------------CCceEEEEEeCCCC
Q 004327 650 -QVHSVCWN--TSGEYLASVS--DELVRVWSIGSGSKGE--CIHELSCT-----------------GNKFHSCVFHPTFP 705 (761)
Q Consensus 650 -~I~sl~~s--pdg~~Lasgs--Dg~I~IWdl~s~~~~~--~i~~l~~~-----------------~~~I~sl~fspdg~ 705 (761)
....|.|. |+..+=++++ ..+|..|--....... .+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 24456664 4455544444 6666555442222211 11111110 24478999999999
Q ss_pred EEEEEEc-CCcEEEEECCCCcEE-----EEcc---------------CCCCeeEEEEeCCCCEEEEEE
Q 004327 706 SLLVIGC-YETLELWNMTENKTL-----TLSA---------------HDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 706 ~L~sgs~-dg~I~IwDl~~~~~~-----~l~~---------------h~~~V~slafspdg~~LaSgs 752 (761)
+|++.+. .|.|+.||+.+.... .+.+ -.+...-|..|-||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9988886 679999999764322 1111 112346778888998776554
No 396
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0049 Score=69.87 Aligned_cols=92 Identities=15% Similarity=0.288 Sum_probs=75.1
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEE-EEEEcCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004327 606 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 683 (761)
Q Consensus 606 ~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~ 683 (761)
...+..+.|+|.-..++.+..+|.|.++.+. ...+.++.-|...++ ++||.|||++|++|- ||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~--- 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG--- 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC---
Confidence 3567889999999999999999999999998 778888887888887 999999999999999 9999999998873
Q ss_pred eEEE-eecCCCceEEEEEe
Q 004327 684 CIHE-LSCTGNKFHSCVFH 701 (761)
Q Consensus 684 ~i~~-l~~~~~~I~sl~fs 701 (761)
.+.. .......|.++.|+
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 3322 22334566666665
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.095 Score=54.59 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=106.1
Q ss_pred CeeeeEEecCCCeeEEEEecCCCEEEEEE-cCC-eEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-----
Q 004327 597 GSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN-YISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS----- 667 (761)
Q Consensus 597 ~~~~~~~~~~~~i~~l~fspd~~~Llags-~dg-~I~IwDl~t~~~i~~l~~h~~--~I~sl~~spdg~~Lasgs----- 667 (761)
++++...........+.|+|....-++.. .-| ...+||.........+...+. ..-.=+|+|||.+|+...
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 55565666667777889999766544443 344 567899988765554433222 122347999999999875
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------C------------CcEEEEECCCCcEE-
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------Y------------ETLELWNMTENKTL- 727 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~------d------------g~I~IwDl~~~~~~- 727 (761)
.|.|-|||.+.+ ...+-++..+.-..+.+.|.+||+.++++.. | -++.+.|..++.++
T Consensus 138 ~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 138 NRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 248999999843 3677788888888899999999998887654 1 14556666666655
Q ss_pred --EEc--cCCCCeeEEEEeCCCCEEEEEEC
Q 004327 728 --TLS--AHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 728 --~l~--~h~~~V~slafspdg~~LaSgs~ 753 (761)
++. .+.-.|..++..+||..++.|-.
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 233 35567889999888877665543
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.80 E-value=0.12 Score=52.39 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=103.3
Q ss_pred EEEEEECCCeEEEEEc--CCCeEEEEec-----cCCcceEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCCce
Q 004327 493 LLATGGHDKKAVLWCT--ESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYS 556 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl--~t~~~~~~l~-----~h~~~V~~v~fspdg~~Lasgs~---------DG~I~VWDl~t~~~~ 556 (761)
+.+.++..-.|.-||. +......++. ......++-..+|+|++++-.-. .|.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 3344444444555763 2333333321 12345666778899998443222 245566654421
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE--CCCCee-----eeEEec----C-CCeeEEEEecCCCEEEEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSC-----AGVFKC----Q-SGATQMRFQPRLGRILAA 624 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD--l~t~~~-----~~~~~~----~-~~i~~l~fspd~~~Llag 624 (761)
+..+...-+--+.++|+.+.+.+.++-+.+-+|.-|| ..+|.. +..++. + -....+++.-+|+.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2233333344567899988778888888888998888 444432 222221 1 123456667788888888
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 004327 625 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd 659 (761)
-..++|..+|..+++.+.++.-....|+|+||--.
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 88899999999999999999888899999999644
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.03 Score=62.55 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEc
Q 004327 575 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 645 (761)
Q Consensus 575 ~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~-------Llags~dg~I~IwDl~t~-~-~i~~l~ 645 (761)
+.+.++.++.....|+-.|++.|+.+..++.+..|+-+.+.|+... -++|-.++.|.-||.+-. + .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3445666777777899999999999999999888888888887542 466778899999999843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 646 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 646 ~h----~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
+| .....|++-..+| +|++|+ +|.|++||- .+. ..-..+.+.+.+|..+..+.+|++|++.+ +..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh--hhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 22 2345566655555 566677 999999997 321 33345677889999999999999776655 44566655
Q ss_pred C
Q 004327 721 M 721 (761)
Q Consensus 721 l 721 (761)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.77 E-value=0.39 Score=58.17 Aligned_cols=225 Identities=10% Similarity=0.054 Sum_probs=115.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 546 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~--------V~~v~fsp----------------dg~~Lasgs~DG~I~ 546 (761)
+..|++++.++.|.-.|..+++.+..+...... +..+.+.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788899999999999988877532211 12233321 244788899999999
Q ss_pred EEecCCCCceeEEeecCCCCeE-------------EEEEcC--CCCcEEEEEe----------CCCcEEEEECCCCeeee
Q 004327 547 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 601 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~-------------sl~fsp--~g~~llasgs----------~Dg~I~vWDl~t~~~~~ 601 (761)
-.|.++++.+.. +. ..+.|. .+.-.| .++.++ .|+ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999886432 21 111110 001111 023344 443 26889999999999998
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
.+....+...- ..+.+..+..++.+. ....||.+.+....-. +...+ .+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCC
Confidence 88743221110 011222222222221 3445566555443221 11110 0100000000000 334555666655
Q ss_pred CCceeEEEeec--CC-------CceEEEEEeC-CC---CEEEEEEcCCcEEEEECCCCcEE
Q 004327 680 SKGECIHELSC--TG-------NKFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 680 ~~~~~i~~l~~--~~-------~~I~sl~fsp-dg---~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
+ ..-.+.. |+ ....-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 2 2222211 11 1111122222 45 36889999999999999999887
No 401
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.74 E-value=1.3 Score=49.07 Aligned_cols=192 Identities=10% Similarity=0.059 Sum_probs=104.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccC--CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCC-CC
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 566 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h--~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~-~~ 566 (761)
|+ .++++..+|.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|.+++.. +..+.... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 44 4455577888888888888876544322 12333333333565 78888899888999877665 33333333 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEe--cCCCEEEEEEc--CCeEEEEECCCCeEE
Q 004327 567 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQVCR 641 (761)
Q Consensus 567 V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fs--pd~~~Llags~--dg~I~IwDl~t~~~i 641 (761)
+....+..+ ..++.++.++.+...|..+++....+..... -..+... ...+.++.+.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 222222222 2333444689999999998888777654331 1111111 23345666655 667888899888777
Q ss_pred EEEcCCC----CCE------EEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEee
Q 004327 642 LKLQGHK----NQV------HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 689 (761)
Q Consensus 642 ~~l~~h~----~~I------~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~ 689 (761)
...+.+. ..+ ..-...-++..++...++.+...|..++ ..+..+.
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~ 277 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFP 277 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEe
Confidence 6643111 111 0001111222223333677888888777 4444443
No 402
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.72 E-value=0.64 Score=48.46 Aligned_cols=236 Identities=11% Similarity=-0.017 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
-..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.......+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999988888888888888999988876655666667788899998876664433 455556555443222222
Q ss_pred --cCCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 562 --GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 562 --~h~~~V~sl~fsp~g~~llasgs~D---------g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
..........|.+.|...| ++... +.|++|+.. .......|+..|+|...++.-.++.|
T Consensus 143 ~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaP---------qG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAP---------QGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccC---------CCCCCcceEECCCCcEEEEeccccce
Confidence 1235677888999875444 65421 234444433 22456789999999988888888889
Q ss_pred EEEECCCCeEEEEE--cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 631 SILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 631 ~IwDl~t~~~i~~l--~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
...|..++.....- .........+--+|-|..-++.. .+.+..||..... -.-..+.+....-.++.++..++..
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEE
Confidence 88888776222111 11122334455567777776655 7788888876532 2233445555666677777777655
Q ss_pred EEEEcCCcEEEEECCCCcEEEEc
Q 004327 708 LVIGCYETLELWNMTENKTLTLS 730 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~~l~ 730 (761)
++-...+.|.-||-++.....+.
T Consensus 291 ~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 291 LSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeccccCceeecCcccceEEEec
Confidence 54555566777776665544443
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.3 Score=51.42 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=114.6
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 595 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~ 595 (761)
+.+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.|..++ .++++--.+..+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 345556699999999999888887777766665555554 44332 112334556776553 455566678888888877
Q ss_pred CCeeeeEEe-----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEEcCC-------CCCEEEE
Q 004327 596 NGSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGH-------KNQVHSV 654 (761)
Q Consensus 596 t~~~~~~~~-----------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~---~i~~l~~h-------~~~I~sl 654 (761)
....+..+. .+.+...++|+|....|+++-.-+-+.||.+.... .+.....+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 653332221 14567789999999999999888877777655322 11111111 1246778
Q ss_pred EEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec------CCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 655 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 655 ~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~------~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.|++....|.+-+ ++.+...|..... ...+.-..+ .-.....++..++|. |+++++-+-.+.|
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 8887554444444 5566666654321 111111111 112234566666665 5555555444433
No 404
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.66 E-value=1.6 Score=48.96 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=82.0
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCce--eEE
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIH 686 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~--~i~ 686 (761)
..+...+++..++++.....++-||--... .... ......+.++.|.+++.+++++.+|.+.+ ....+.... .+.
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence 334556665544444333333334432211 1111 22345689999999999998887776543 333332111 223
Q ss_pred Eeec--CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 687 ELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 687 ~l~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l----~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.... ....+..+.|.+++. +++++..|.+.... ..++.-.. ..-...++.+.|.++++.++ .+.+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence 2222 223588899988776 67777778666553 45554322 23345788999977665555 4577887655
No 405
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.66 E-value=0.57 Score=51.78 Aligned_cols=188 Identities=15% Similarity=0.178 Sum_probs=116.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC----CCCE--EEEEe-CC---CeEEEEecCCCCceeE
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSS-AD---RTVRVWDTENPDYSLR 558 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp----dg~~--Lasgs-~D---G~I~VWDl~t~~~~i~ 558 (761)
|...+|+....++-+.+||+.. +.+..+.. +.++.|.... +++. |++++ .+ .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3556788888889999999865 44455532 3334333321 3332 44443 32 4799998864333344
Q ss_pred Eeec-------CCCCeEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----eeeeEEecCCCeeEEEEecCCCEE
Q 004327 559 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 559 ~~~~-------h~~~V~sl~fs--p-~g~~llasgs~Dg~I~vWDl~---t~----~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
.+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|...+.+..+......++|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3322 12347778874 3 355677778889998888774 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEc--CCC-CEEEEEe--CCeEEEEECCCC
Q 004327 622 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWN--TSG-EYLASVS--DELVRVWSIGSG 679 (761)
Q Consensus 622 lags~dg~I~IwDl~t-----~~~i~~l~~--h~~~I~sl~~s--pdg-~~Lasgs--Dg~I~IWdl~s~ 679 (761)
+++-.+--|.-|+.+- +..+....+ ....|..|++- .++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998862 233333322 34567777764 344 4777777 889999998754
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=1.1 Score=47.21 Aligned_cols=195 Identities=13% Similarity=0.100 Sum_probs=115.6
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004327 520 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 598 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~ 598 (761)
-.+-+.++.|+. ++.+.+.++.-++|.|+.++..+...-. ...+.-.++..+ .+++..+..|.-+.++|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCC
Confidence 345577888864 4788888888899999998876443222 122445555555 3455566656667788887533
Q ss_pred ---eeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 004327 599 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVSDELV 671 (761)
Q Consensus 599 ---~~~~~~~~~~-i~~l~fspd~~~Llags~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I 671 (761)
....+...+. ...++++ |++-++++.|+-+.+.|+.... .+.... ....+.++..+++-.|++....| +
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~eg-v 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEG-V 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccc-e
Confidence 2233333332 2445554 5677888899999999998652 222221 23367888887776666655444 6
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 672 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 672 ~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
.+-|..+.+....+..... .+++..-.|.-.+++.++...+..+-+.|+.+.
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccCC
Confidence 6777766544333333322 222222134445566666666666666666543
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.61 E-value=0.14 Score=60.17 Aligned_cols=177 Identities=7% Similarity=-0.044 Sum_probs=86.3
Q ss_pred CcEEEEEeCC------CcEEEEECCCCeeeeEEecCCCe-eEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 004327 577 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 642 (761)
Q Consensus 577 ~~llasgs~D------g~I~vWDl~t~~~~~~~~~~~~i-~~l~fspd~~~Llags~dg-----~I~IwDl~t~~~i~-- 642 (761)
+.+++.|+.+ ..+..||..+......-....+. ......-++..+++|+.++ .+.+||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4677777743 34788898876543322211111 1122233456666677653 48889988753221
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 643 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 643 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----------------------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
.+.........+. -+|++++.|+ ++ .+..||..+.. ...+..+.. ......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWT--GTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCc--ccccCc
Confidence 1111111111222 2566666665 42 46677776541 111222111 111112
Q ss_pred EEeCCCCEEEEEEcC------CcEEEEECCC-CcEEEE---ccCCCCeeEEEEeCCCCEEEEEECCC--eEEEc
Q 004327 699 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTL---SAHDKLVSSLAASTVNGMVASASHDK--CVKIW 760 (761)
Q Consensus 699 ~fspdg~~L~sgs~d------g~I~IwDl~~-~~~~~l---~~h~~~V~slafspdg~~LaSgs~DG--~I~IW 760 (761)
+..-++...++|+.+ ..+..||..+ ++...+ .........+. -++++.++|+.|| .+-.|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 223345555556543 2478899887 554422 22222222222 3678888999888 44444
No 408
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.59 E-value=0.12 Score=46.87 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=69.6
Q ss_pred eEEEEE---cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004327 567 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 643 (761)
Q Consensus 567 V~sl~f---sp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~ 643 (761)
|+++++ ..+|..-|++|+.|..|++|+-. ..+..+.....+++++-... ..|+.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 445554 45666788899999999999754 67777777788888888776 789999999999999863 33444
Q ss_pred EcCCCCCEEEEEEcC-CC---CEEEEEe-CCeEE
Q 004327 644 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVR 672 (761)
Q Consensus 644 l~~h~~~I~sl~~sp-dg---~~Lasgs-Dg~I~ 672 (761)
.+. +..+.++++.. ++ .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443 33466665543 32 2344454 77664
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.54 E-value=1.5 Score=47.19 Aligned_cols=223 Identities=12% Similarity=0.100 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec--C---CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004327 520 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 594 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~--h---~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl 594 (761)
-...+.+|.|..+..-+++| ..+. |+...++......... . .....+|.|..+ ..+++|. .+ +.+...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TT-EEEEES
T ss_pred CCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-Cc-eEEEec
Confidence 34578999998555556665 4554 3444433322222111 1 123567777643 4454553 44 444444
Q ss_pred CCCeeeeEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 004327 595 NNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 670 (761)
Q Consensus 595 ~t~~~~~~~~----~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~ 670 (761)
+.++.-..+. .++....+....+ ...++++..|.|+.-.-....=......-...+..+..++||.+++++..|.
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 4444333332 2233344444444 3444445555544332211111222334556788999999999999999664
Q ss_pred -EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC-CCCcEEE---Ec--cCCCCeeEEEEeC
Q 004327 671 -VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLT---LS--AHDKLVSSLAAST 743 (761)
Q Consensus 671 -I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl-~~~~~~~---l~--~h~~~V~slafsp 743 (761)
+.-||-... .-...-......|..+.|.|++.. ......+.|++=+. ...+... .. ...-.+.+++|.+
T Consensus 167 ~~~s~~~G~~---~w~~~~r~~~~riq~~gf~~~~~l-w~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 167 FYSSWDPGQT---TWQPHNRNSSRRIQSMGFSPDGNL-WMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp EEEEE-TT-S---S-EEEE--SSS-EEEEEE-TTS-E-EEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred EEEEecCCCc---cceEEccCccceehhceecCCCCE-EEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence 456775432 122222335678999999999874 44558888888772 2222221 11 1223489999999
Q ss_pred CCCEEEEEECC
Q 004327 744 VNGMVASASHD 754 (761)
Q Consensus 744 dg~~LaSgs~D 754 (761)
++...|+|+..
T Consensus 243 ~~~~wa~gg~G 253 (302)
T PF14870_consen 243 PNEIWAVGGSG 253 (302)
T ss_dssp SS-EEEEESTT
T ss_pred CCCEEEEeCCc
Confidence 88777766544
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.0027 Score=63.90 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=78.7
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEe-cCCCeeEE-
Q 004327 536 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQM- 612 (761)
Q Consensus 536 Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~-~~~-~~~~i~~l- 612 (761)
|..-+.||.|+-+++..-+...+....|...-.- +....-+++|+.+|.|++|+..-..... .+. ....+.++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445678888887776543323322222222111 2223345578889999999887321111 111 11222222
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEECCC
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS 678 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-~~I~sl~~spdg~~Lasg--s-Dg~I~IWdl~s 678 (761)
..-.++.+.++++.+|.|+.|++.-.+.+.....|+ .++..+..+..+++|++. + |..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222344577788889999999999888777766676 455555555555555555 4 56666666643
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.49 E-value=1.1 Score=47.74 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcC-------CCeEEEEecc-----CCcceEEEEEcCCCC------------EEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 537 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~-------t~~~~~~l~~-----h~~~V~~v~fspdg~------------~La 537 (761)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999998888887788999999986 1123344432 234678888875322 367
Q ss_pred EEeCCCeEEEEecCCCCc----eeEEeec-CCCCeE-EEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeee--EEecC-
Q 004327 538 TSSADRTVRVWDTENPDY----SLRTFTG-HSTTVM-SLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 606 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~----~i~~~~~-h~~~V~-sl~fsp~--g~~llasgs~Dg~I~vWDl~t~~~~~--~~~~~- 606 (761)
.+++||+|.-|...-... ....+.. ..+.|+ .+++... +..|.++--..++|.|||-.-.+... .+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532221 1222221 123333 4555433 45555555578899999865322210 11100
Q ss_pred --C-----------C---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcC------CCCE
Q 004327 607 --S-----------G---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 662 (761)
Q Consensus 607 --~-----------~---i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~sp------dg~~ 662 (761)
. . |+...-.++...-+.+..-|.|.+||+... .+.++. +.-..-+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0 111111222222333344578999998754 444442 2333446677655 3455
Q ss_pred EEEEe-CCeEEEEECCCC
Q 004327 663 LASVS-DELVRVWSIGSG 679 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~ 679 (761)
|+.-- ||+|..||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 55443 999999999877
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.025 Score=67.96 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCEEEEE--eCCCeEEEEecCCCCcee----EEee------cCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 523 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasg--s~DG~I~VWDl~t~~~~i----~~~~------~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
.|..+...+|+...++. +.+-.|.+||+++-.... ..+. .......++.|+|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676654443 334478999987532111 1111 12234567889887666677788899999
Q ss_pred EEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEE
Q 004327 591 YWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 591 vWDl~t~-~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~~spdg~~Las 665 (761)
+..+.-. ..+..+......++++|+|.|..+++|...|++.-|...-. ....+.. ....|.||+|-..-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9887642 22333555677899999999999999999999998876533 2222211 2467999999988888776
Q ss_pred Ee
Q 004327 666 VS 667 (761)
Q Consensus 666 gs 667 (761)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=1.2 Score=48.90 Aligned_cols=231 Identities=12% Similarity=0.144 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--eeEEe----ecCCCCeEEEEEcCC---CCcEEEEEeCC-------
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN------- 586 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~--~i~~~----~~h~~~V~sl~fsp~---g~~llasgs~D------- 586 (761)
..+.|+|.||+++|++ ...|.|++++.. +.. .+..+ .........++|+|+ ...+.++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 569999999933 332 12222 233456899999994 23444333321
Q ss_pred -CcEEEEECCCC--e-----ee-eEEec----CCCeeEEEEecCCCEEEEEEcCC-------------eEEEEECCCC--
Q 004327 587 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQ-- 638 (761)
Q Consensus 587 -g~I~vWDl~t~--~-----~~-~~~~~----~~~i~~l~fspd~~~Llags~dg-------------~I~IwDl~t~-- 638 (761)
..|.-|.+..+ . .+ ..+.. ......+.|.|++..+++.+..+ .|.-++....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444554433 1 11 11122 22356799999986555555422 2333332211
Q ss_pred ------------eEEEEEcCCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEECCCCCC----------------------
Q 004327 639 ------------VCRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK---------------------- 681 (761)
Q Consensus 639 ------------~~i~~l~~h~~~I~sl~~spd-g~~Lasgs--Dg~I~IWdl~s~~~---------------------- 681 (761)
..+. -.++ .....++|+|. |.++++-. |..=.|.-+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~-A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEE-EeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0000 0111 12457999998 66665533 33222222222110
Q ss_pred ----ceeEEEeecCCCceEEEEEeCCCC------EEEEEEc-CCcEEEEECCCCcEE----EEc-cCCCCeeEEEEeCCC
Q 004327 682 ----GECIHELSCTGNKFHSCVFHPTFP------SLLVIGC-YETLELWNMTENKTL----TLS-AHDKLVSSLAASTVN 745 (761)
Q Consensus 682 ----~~~i~~l~~~~~~I~sl~fspdg~------~L~sgs~-dg~I~IwDl~~~~~~----~l~-~h~~~V~slafspdg 745 (761)
..++..+.. ...+..+.|..... .++++.. .+.|...+++.+..+ .+. .....+..|++.|||
T Consensus 239 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 011222222 24455566654322 2444444 457888887655333 222 344579999999999
Q ss_pred CEEEEEECCCeEE
Q 004327 746 GMVASASHDKCVK 758 (761)
Q Consensus 746 ~~LaSgs~DG~I~ 758 (761)
.++++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9988888888874
No 414
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.037 Score=66.38 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCCEEEEEECCCeEEEEEcCCC-eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeE
Q 004327 490 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 568 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~-~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~ 568 (761)
-+..++.|+..|.|...|.... .....=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557889999999998887652 21122223457899999999999999999999999999998664 677766666655
Q ss_pred EEEE---cCCCCcEEEEEeCCCcEEEEEC
Q 004327 569 SLDF---HPSKEDLLCSCDNNSEIRYWSI 594 (761)
Q Consensus 569 sl~f---sp~g~~llasgs~Dg~I~vWDl 594 (761)
.+-+ ..+ +..+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~-nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQ-NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCC-CcEEEEccCCCc--eEEE
Confidence 5543 333 335657776665 5554
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.29 E-value=2 Score=47.75 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCEEEEEE-----------CCC-eEEEEEcCC--Ce--EEEEeccCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 481 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs-----------~Dg-~I~VWdl~t--~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.......+.++|.+++ |++++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 467899999999877653 223 777775432 32 234444444456889999888 444444543
Q ss_pred EEEEecCCC-----Cc--eeEEeec----CCCCeEEEEEcCCCCcEEEEEeC------------------CCcEEEEECC
Q 004327 545 VRVWDTENP-----DY--SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN 595 (761)
Q Consensus 545 I~VWDl~t~-----~~--~i~~~~~----h~~~V~sl~fsp~g~~llasgs~------------------Dg~I~vWDl~ 595 (761)
+++.|.+.. +. .+..+.. +......++|.|+|..++..++. .|.|..+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 344455422 11 1112222 12447789999998655544421 1445566665
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 004327 596 NGSCAGVFKCQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 596 t~~~~~~~~~~~~i~~l~fspd~~~Llags 625 (761)
.++.............++|++++..+++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 544332222223356899999877665533
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.29 E-value=0.78 Score=55.69 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeEEeecCCC--------CeEEEEEcCC---------------CCcEEEEEeCCCcE
Q 004327 533 LSRLATSSADRTVRVWDTENPDYSLRTFTGHST--------TVMSLDFHPS---------------KEDLLCSCDNNSEI 589 (761)
Q Consensus 533 g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~--------~V~sl~fsp~---------------g~~llasgs~Dg~I 589 (761)
+..|++++.++.|.-.|..+++...+ +..... ....+.+... ....++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~-~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWK-FDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEE-EcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 45677777788888888887765332 221110 0122333211 11244567779999
Q ss_pred EEEECCCCeeeeEEecCCCee-------------EEEEec--CCCEEEEEEc----------CCeEEEEECCCCeEEEEE
Q 004327 590 RYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISILDVETQVCRLKL 644 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~~i~-------------~l~fsp--d~~~Llags~----------dg~I~IwDl~t~~~i~~l 644 (761)
.-.|.++|+.+..+..++.+. .+.-.| .++.+++++. +|.|+-||.++++.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999987765433221 111112 2356777653 588999999999999887
Q ss_pred cC
Q 004327 645 QG 646 (761)
Q Consensus 645 ~~ 646 (761)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 63
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.26 E-value=0.18 Score=57.37 Aligned_cols=170 Identities=11% Similarity=0.158 Sum_probs=104.9
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CCEEEEEEcCCeEEEEECC--
Q 004327 565 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVE-- 636 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasgs--~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd----~~~Llags~dg~I~IwDl~-- 636 (761)
.+|..++|. ||+.++.+.- .+|++++=|- ..+.. ...|..+.|.|- ...+++.-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGq---FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQ---FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeec---cceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468888986 4566665542 3444444332 22222 256888999885 3468888889999999875
Q ss_pred ---CCeEEEEEcC-C--CCC--EEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 637 ---TQVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 637 ---t~~~i~~l~~-h--~~~--I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
..+.+..-.. . ..+ -..+.|+|...+|++-. .+.-.+++++.... .....+ ...+.|+|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEE
Confidence 2222222111 1 112 24678999999988877 55445667665432 222223 457889999999999988
Q ss_pred EEEEcCC-cEEEEECCCCcEE-----EEccCCCCeeEEEEeC
Q 004327 708 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAAST 743 (761)
Q Consensus 708 ~sgs~dg-~I~IwDl~~~~~~-----~l~~h~~~V~slafsp 743 (761)
+++-... .-+|||-...... .+..-.+.|.++.-.-
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 7776654 7789986544322 3334555666665443
No 418
>PHA03098 kelch-like protein; Provisional
Probab=96.25 E-value=0.16 Score=59.47 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=75.9
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 004327 577 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK 643 (761)
Q Consensus 577 ~~llasgs~D-----g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~d------g~I~IwDl~t~~~i~~ 643 (761)
+.+++.|+.+ ..+..||..+.+....-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4666677654 3577888877654432221111 11222 2344555666632 4688999887542221
Q ss_pred --EcCCCCCEEEEEEcCCCCEEEEEe-CC--------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004327 644 --LQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 644 --l~~h~~~I~sl~~spdg~~Lasgs-Dg--------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~ 712 (761)
+..... -.+++. .++.+++.|+ ++ .+.+||..+.. ...+..+.........+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 3455555554 21 38888887642 1112111111111122222 5665666655
Q ss_pred C-----CcEEEEECCCCcEEEEccCCCCeeEE
Q 004327 713 Y-----ETLELWNMTENKTLTLSAHDKLVSSL 739 (761)
Q Consensus 713 d-----g~I~IwDl~~~~~~~l~~h~~~V~sl 739 (761)
+ ..|.+||..++....+......+.++
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 4 37889998887766544433334333
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.13 E-value=1.2 Score=46.95 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCEEEEEe---CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCe
Q 004327 523 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 598 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs---~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD-l~t~~ 598 (761)
.+.+.++++++..++... ....++++...... ...+.+ ..+....|++++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 688999999999877666 33456666554322 222232 368888999995 4444544455566663 33332
Q ss_pred eee-EEec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEcCCCCCEEEEEEcCCCCE
Q 004327 599 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 662 (761)
Q Consensus 599 ~~~-~~~~--~-~~i~~l~fspd~~~Llags~---dg~I~IwDl~---t~------~~i~~l~~h~~~I~sl~~spdg~~ 662 (761)
... .... . ..|..+.++|||.+++.... ++.|++--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999888773 4677766443 22 111222233568899999999998
Q ss_pred EEEEe
Q 004327 663 LASVS 667 (761)
Q Consensus 663 Lasgs 667 (761)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 420
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.96 E-value=3 Score=51.09 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=97.1
Q ss_pred cCCcceEEEEEc---C----CCCEEEEEeCCCeEEEEecCCC------C--------ceeEEeec---CCCCeEEEEEcC
Q 004327 519 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENP------D--------YSLRTFTG---HSTTVMSLDFHP 574 (761)
Q Consensus 519 ~h~~~V~~v~fs---p----dg~~Lasgs~DG~I~VWDl~t~------~--------~~i~~~~~---h~~~V~sl~fsp 574 (761)
....+|..|+|. . ...+|++= ....+.|+...-. . .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 455788888887 2 12344444 4455666662111 0 01222221 123567788888
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004327 575 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 575 ~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl 654 (761)
....-||..+..|...||++....... .. ..-+.....|.| ++|... ......|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Cc----------ceeeccCCCccc-cCCCcc----------cCcceee
Confidence 777777788888888888882111000 00 111111112333 233221 1445678
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 655 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 655 ~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+|.++...|++++...+.++|+.+......+ ........|..+.-++.....+..-....|..+|+..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888899898888999999876432221 2223456688888777732222222335676777766
No 421
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.92 E-value=3.7 Score=45.58 Aligned_cols=190 Identities=5% Similarity=-0.054 Sum_probs=99.9
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC--Cee
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 610 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~--~i~ 610 (761)
..++++..||.|.-.|.+++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345556788888888888776422111111 12223333333543 4467778899999999999998888766 111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeE
Q 004327 611 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 611 ~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~---~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i 685 (761)
...+. ....++..+.++.++..|..+++.+....... ..+..--...++..++... ++.+.-+|..++...-..
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 22222 22445555578999999999998877654322 1111111122333333322 335666666555221111
Q ss_pred EE-eecCCC------ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 686 HE-LSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 686 ~~-l~~~~~------~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.. ...... .+..-.+.-++ .++.++.++.+...|..+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 00 000000 11111111122 2467777778888888888877
No 422
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.051 Score=65.23 Aligned_cols=71 Identities=27% Similarity=0.391 Sum_probs=57.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEE---EEcCCCCEEEEEeCCCeEEEEecC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV---RFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v---~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
.++|++++|+.||++++.|-.+|.|.+||+..++..+.+..|..+++.+ .+..++..++++...|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5689999999999999999999999999999999998887776665554 44456667888877776 55543
No 423
>PLN02153 epithiospecifier protein
Probab=95.90 E-value=0.84 Score=50.06 Aligned_cols=63 Identities=6% Similarity=-0.009 Sum_probs=33.3
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEEec-----CCC-eeEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 004327 577 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QSG-ATQMRFQPRLGRILAAAIE-----------NYISILD 634 (761)
Q Consensus 577 ~~llasgs~D-----g~I~vWDl~t~~~~~~~~~-----~~~-i~~l~fspd~~~Llags~d-----------g~I~IwD 634 (761)
+.+++.|+.+ ..+.+||+.+.+....-.. ... ....+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887655432211 111 1112222344556666643 2577889
Q ss_pred CCCCe
Q 004327 635 VETQV 639 (761)
Q Consensus 635 l~t~~ 639 (761)
.++.+
T Consensus 166 ~~~~~ 170 (341)
T PLN02153 166 IADGK 170 (341)
T ss_pred CCCCe
Confidence 88753
No 424
>PHA03098 kelch-like protein; Provisional
Probab=95.82 E-value=0.29 Score=57.28 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=87.7
Q ss_pred CCCEEEEEECCC------eEEEEEcCCCeEEEE--eccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCCce
Q 004327 490 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 556 (761)
Q Consensus 490 dg~~Lasgs~Dg------~I~VWdl~t~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~~~ 556 (761)
++.+++.|+.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776542 567788766543211 1111112222222 56777777765 35778888765532
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC-
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 627 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~D------g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~d- 627 (761)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-..+.+ ..++. ..++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccC
Confidence 11100111111122222 34666666632 4588899887665433222111 11222 2344555555542
Q ss_pred -------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCC
Q 004327 628 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 679 (761)
Q Consensus 628 -------g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~ 679 (761)
..+.+||..+.+-... +...... .+++. -++++++.|+ + +.|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887642221 1111111 12222 2566666665 3 26777777653
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=95.76 E-value=1.2 Score=48.78 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=87.1
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 599 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~-~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~ 599 (761)
...+.++.+.+++.+++++ ..|.+..- .+.+...... ...-...++++.+.+++. +++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999988766655 45544432 1222111222 223346789999999865 44344 456665323444433
Q ss_pred eeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCeE
Q 004327 600 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELV 671 (761)
Q Consensus 600 ~~~~~~-----~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~---~h~~~I~sl~~spdg~~LasgsDg~I 671 (761)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-.... .-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222221 13467788888754 666667776653 334333322222 22246788888888888888889988
Q ss_pred EEEEC
Q 004327 672 RVWSI 676 (761)
Q Consensus 672 ~IWdl 676 (761)
-.|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.75 E-value=0.012 Score=68.95 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=99.8
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcC--CCeEE-----EEeccCCcceEEEEEcC---CCCEEEEEeCC
Q 004327 474 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 542 (761)
Q Consensus 474 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~--t~~~~-----~~l~~h~~~V~~v~fsp---dg~~Lasgs~D 542 (761)
.+++..+.|-.+.|-. +...++ -.-|.+.|||++ .|+.. +........+.-|.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4566777788888854 222222 223678899875 33322 22223334455666655 56678888888
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Ll 622 (761)
++|++..+++.. ...+.+|...++.++|...|-.++.. .+|||..|+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFA 251 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEE
Confidence 999998887643 35566799999998887665444433 355555555
Q ss_pred EEEcCCeEEEE-----ECCCCeEEEEEcCCCC-CEEEEEEcCC-------C--CEEEEEe--CCeEEEEECCCC
Q 004327 623 AAAIENYISIL-----DVETQVCRLKLQGHKN-QVHSVCWNTS-------G--EYLASVS--DELVRVWSIGSG 679 (761)
Q Consensus 623 ags~dg~I~Iw-----Dl~t~~~i~~l~~h~~-~I~sl~~spd-------g--~~Lasgs--Dg~I~IWdl~s~ 679 (761)
.++.||.+.+| +.....|.+.++.|.+ +-.|.-|+.. + .++++++ +..+++|.....
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 56666554444 3344456666666663 3223223221 1 2345555 558889987543
No 427
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=0.02 Score=57.86 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=81.3
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE-E
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S 697 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~-s 697 (761)
+.+.+.+|.|.-++++..+....-. -|... ..+ ..-+.-+++|. +|.|++|...-.. .....+......|. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence 4556667888877776543221111 12111 111 12234466666 9999999876221 11111111122222 2
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEECCCCcEEE-EccCC-CCeeEEEEeCCCCEEEEE--ECCCeEEEcC
Q 004327 698 CVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 761 (761)
Q Consensus 698 l~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~~h~-~~V~slafspdg~~LaSg--s~DG~I~IWd 761 (761)
+..-.++.+.++++.++.|+.|++.-++.+- ...|. .++..+..+..+++|+++ |.|..++.|+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 2333455678999999999999999999884 44555 566677777777888888 8888888886
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.71 E-value=4.8 Score=45.25 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=66.2
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 606 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 606 ~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~-----~i~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
...+..+.|.+++..+++ +..|.+..-+ ..+. ....... -...+.++.|.+++..+++|.+|.+.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~-g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLL-TRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEE-eCCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 455788889888666554 4556654432 2222 1222221 12358899999999998888888766653 33
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 332222222222345678888877655 6777778876554
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.68 E-value=0.85 Score=51.24 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=48.7
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE-EEEEEc-CC----------------CCEEEEEe--C
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV-HSVCWN-TS----------------GEYLASVS--D 668 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I-~sl~~s-pd----------------g~~Lasgs--D 668 (761)
+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.= .-+... .. ..+|+.-. .
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 6789999997777776667999999999998888887755421 111111 11 12344433 7
Q ss_pred CeEEEEECCCC
Q 004327 669 ELVRVWSIGSG 679 (761)
Q Consensus 669 g~I~IWdl~s~ 679 (761)
|.|.||.++.+
T Consensus 390 g~lEvW~~~~g 400 (415)
T PF14655_consen 390 GILEVWSMRQG 400 (415)
T ss_pred CeEEEEecCCC
Confidence 89999999877
No 430
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.64 E-value=2.1 Score=44.73 Aligned_cols=209 Identities=11% Similarity=0.063 Sum_probs=126.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 602 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~ 602 (761)
.-..|+-.+||..-+++...+.|--.|..+++.. ..-.+....-..|..-|++...|+-.+ .-|.-+|-++.+..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~- 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTR- 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEE-
Confidence 3466788889988888888888888888887742 222334445667788888876663322 245556665544332
Q ss_pred Ee-----cCCCeeEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 004327 603 FK-----CQSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 667 (761)
Q Consensus 603 ~~-----~~~~i~~l~fspd~~~Llags~d---------g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs- 667 (761)
|. .........|.+.|+..+++... +.|++|+.. ....-+.||..|||...++.-
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecc
Confidence 22 23446778999998887776531 234444432 234557889999999887766
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE--EEccCCCCeeEEEEeCCC
Q 004327 668 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 745 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~slafspdg 745 (761)
++.|-..|..++.. +.+..-.........+..+|.+...++....+.++.||-...... .+.+....-.++.....+
T Consensus 209 gnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g 287 (353)
T COG4257 209 GNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG 287 (353)
T ss_pred ccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence 77777777766521 222222222333445556677776666666677888776554433 333333344444444333
Q ss_pred C
Q 004327 746 G 746 (761)
Q Consensus 746 ~ 746 (761)
+
T Consensus 288 r 288 (353)
T COG4257 288 R 288 (353)
T ss_pred c
Confidence 3
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.56 E-value=0.4 Score=53.28 Aligned_cols=147 Identities=11% Similarity=0.039 Sum_probs=82.2
Q ss_pred CCeeEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 004327 607 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 670 (761)
Q Consensus 607 ~~i~~l~fspd~~~Llags-----------~dg-~I~IwDl~t--~~--~i~~l~~h~~~I~sl~~spdg~~LasgsDg~ 670 (761)
.....|+|.++++.+++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ ++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4466788888877665542 123 777776543 22 223333334456889999998 444333433
Q ss_pred EEEEECCCCC----CceeE-EEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CcEEEEECC
Q 004327 671 VRVWSIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNMT 722 (761)
Q Consensus 671 I~IWdl~s~~----~~~~i-~~l~~~----~~~I~sl~fspdg~~L~sgs~d-------------------g~I~IwDl~ 722 (761)
+++.|..... ..+.+ ..+... ......++|.|||...++.+.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344543211 11222 223221 2346789999999865554421 346666666
Q ss_pred CCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 723 ENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 723 ~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
+++...+...-.....++|+++|.++++-..+
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 55544333333446789999999887764433
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.56 E-value=1.7 Score=52.41 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=55.5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
-.|..|.++++|.+|+..+..| |.|..+.........+.+....|.|=.+.-+ ..++ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~----------------- 144 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSN----------------- 144 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCC-----------------
Confidence 4688999999999999988866 4444443211111223333333443333211 2222 111
Q ss_pred EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 004327 602 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 638 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd---~~~Llags~dg~I~IwDl~t~ 638 (761)
....|..+.|+|. +.+|++-+.|+.|++||+...
T Consensus 145 ---~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 ---SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1244667888886 478888889999999998653
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=1 Score=49.98 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=86.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE----EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~----~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
..++|.++.||+|.+.||+--.|++|.+++....+.. .+.+..+..|...+|+.+ .-+|..+..| +-+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3457999999999999999999999999987433322 233445566999999866 4566665555 778877766
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeee
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCA 600 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs-~Dg~I~vWDl~t~~~~ 600 (761)
+..++..+.|+..|.-..|+++.+-++.+.+ ..+++.=+.++++...
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 6667788888889999999998655554444 4445555555554443
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=95.44 E-value=0.53 Score=54.33 Aligned_cols=141 Identities=7% Similarity=-0.001 Sum_probs=67.9
Q ss_pred CCCEEEEEECCC-----eEEEEEcCCCeEEE--EeccCCcceEEEEEcCCCCEEEEEeCC--CeEEEEecCCCCceeEEe
Q 004327 490 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 490 dg~~Lasgs~Dg-----~I~VWdl~t~~~~~--~l~~h~~~V~~v~fspdg~~Lasgs~D--G~I~VWDl~t~~~~i~~~ 560 (761)
++.++++|+.++ .+..||..+.+-.. .+.........+. -++.+.+.|+.+ ..+..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 355667776542 56677876644222 2211111122222 266777777754 3577888765443 222
Q ss_pred ecCCCCeE--EEEEcCCCCcEEEEEeCCC---cEEEEECCCCeeeeEEecCCCeeE-EEEecCCCEEEEEEcCCeEEEEE
Q 004327 561 TGHSTTVM--SLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 561 ~~h~~~V~--sl~fsp~g~~llasgs~Dg---~I~vWDl~t~~~~~~~~~~~~i~~-l~fspd~~~Llags~dg~I~IwD 634 (761)
..-..+.. +++.. ++.+.+.|+.++ .+..||.++......-....+... ....-+ +.|++.+ |.+.+||
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~-~~IYv~G--G~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG-RRLFLVG--RNAEFYC 421 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEEC-CEEEEEC--CceEEec
Confidence 21111111 22222 256666776543 477888877665443222111111 111223 3444443 4577888
Q ss_pred CCCCe
Q 004327 635 VETQV 639 (761)
Q Consensus 635 l~t~~ 639 (761)
.++.+
T Consensus 422 p~~~~ 426 (480)
T PHA02790 422 ESSNT 426 (480)
T ss_pred CCCCc
Confidence 87653
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.42 E-value=0.8 Score=55.16 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLW 506 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VW 506 (761)
-.|..|.++++|++||..|..|.+.+.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 458999999999999999886655443
No 436
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.41 E-value=6.3 Score=48.33 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=94.6
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEECCCeEEEEEcC------C---------CeEEEEecc---CCcceEEEEEcC
Q 004327 477 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP 531 (761)
Q Consensus 477 ~H~~~V~~lafS---p----dg~~Lasgs~Dg~I~VWdl~------t---------~~~~~~l~~---h~~~V~~v~fsp 531 (761)
.-..+|..|+|. . ..++|++=. ...+.|+... . ..++..+.. ...+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678888887 2 223555544 4566676611 1 123334431 234678999998
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCC----ceeEEeecCCC----------CeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004327 532 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 596 (761)
Q Consensus 532 -dg~~Lasgs~DG~I~VWDl~t~~----~~i~~~~~h~~----------~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t 596 (761)
+...||+....|...||++.... ..+.....+.+ .-..|.|.++.+.+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 45689999999999999992111 11121111222 234788887766666 444 56799999998
Q ss_pred Ceeee-E--EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 597 GSCAG-V--FKCQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 597 ~~~~~-~--~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
..... . ......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 2 22334577788777633333333447888888877
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.37 E-value=4.9 Score=43.13 Aligned_cols=165 Identities=8% Similarity=0.090 Sum_probs=94.2
Q ss_pred cEEEEECCCCeeeeEEecCCC-------eeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEcCCC------
Q 004327 588 EIRYWSINNGSCAGVFKCQSG-------ATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 648 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~~-------i~~l~fspd~-----~~Llags~-dg~I~IwDl~t~~~i~~l~~h~------ 648 (761)
.|.+||+.+++.++.+..+.. ...+.+.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999998888875543 4567777632 34444444 3689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCeEEEEECCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 004327 649 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 701 (761)
Q Consensus 649 -------------~~I~sl~~sp---dg~~LasgsDg~I~IWdl~s-----~~~~------~~i~~l~~~~~~I~sl~fs 701 (761)
..+..++.+| ++++|+...=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2355666655 66666666522223333321 1110 1122222222456678899
Q ss_pred CCCCEEEEEEcCCcEEEEECCC-----CcEEEEc-cC-CCCeeEEEEeC--CCCEEEEEE
Q 004327 702 PTFPSLLVIGCYETLELWNMTE-----NKTLTLS-AH-DKLVSSLAAST--VNGMVASAS 752 (761)
Q Consensus 702 pdg~~L~sgs~dg~I~IwDl~~-----~~~~~l~-~h-~~~V~slafsp--dg~~LaSgs 752 (761)
++|..+++--..+.|..|+..+ ...+... .. -..+.++.+.+ ++.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9998777777788999999876 2122222 22 35788999998 776555543
No 438
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.20 E-value=7.1 Score=44.07 Aligned_cols=225 Identities=12% Similarity=0.146 Sum_probs=120.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCce---eEEeecCCCCeEEEEEc---CC-CCcEEEEEeCCCcEEEEECCC--Ce----
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFH---PS-KEDLLCSCDNNSEIRYWSINN--GS---- 598 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~---i~~~~~h~~~V~sl~fs---p~-g~~llasgs~Dg~I~vWDl~t--~~---- 598 (761)
+...|++|+..|.++||+....... +..-..-..+|..+.+- +. ....||. -.-..+.||.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3468999999999999998654421 22223345677777653 22 2233433 2356677777621 11
Q ss_pred ----eeeEEe--cCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 599 ----CAGVFK--CQSGATQMRFQPR-----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 599 ----~~~~~~--~~~~i~~l~fspd-----~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
....+. .......+++-|- ...+.+-+.||.+.+|+-+.-.....+.. .--...++|.+.-..|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 111222 2333444555442 24577778899999999887655444443 22223467777777777777
Q ss_pred -CCeEEEEECCC--------------------CCCceeEEEeecCCCceEEE---EEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 668 -DELVRVWSIGS--------------------GSKGECIHELSCTGNKFHSC---VFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 668 -Dg~I~IWdl~s--------------------~~~~~~i~~l~~~~~~I~sl---~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+..+..|.... ++......++.. +..+..+ .++.....|++-+ ...+.+.+..
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~- 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN- 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-
Confidence 77888887521 111111112221 2233333 3333333344443 3456666653
Q ss_pred CcEEEEccCCCCeeEEE-E----eCCC---CEEEEEECCCeEEEcC
Q 004327 724 NKTLTLSAHDKLVSSLA-A----STVN---GMVASASHDKCVKIWK 761 (761)
Q Consensus 724 ~~~~~l~~h~~~V~sla-f----spdg---~~LaSgs~DG~I~IWd 761 (761)
|.+......+....|++ | ..++ ..++.++.++.+.||+
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 44443333333333332 1 1122 2588889999999874
No 439
>PLN02193 nitrile-specifier protein
Probab=94.74 E-value=10 Score=43.62 Aligned_cols=174 Identities=7% Similarity=-0.026 Sum_probs=80.9
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCeeeeEEe---cCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 004327 577 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 639 (761)
Q Consensus 577 ~~llasgs~D-------g~I~vWDl~t~~~~~~~~---~~~--~i~~l~fspd~~~Llags~d-----g~I~IwDl~t~~ 639 (761)
+.+++.|+.+ ..+.+||+.+.+....-. .+. ........-++..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666642 247788988765443211 011 01111122234455555543 468899998764
Q ss_pred EEE--EEc--CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEee--cCCCceEEEEEeCCCCEE
Q 004327 640 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 640 ~i~--~l~--~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IWdl~s~~~~~~i~~l~--~~~~~I~sl~fspdg~~L 707 (761)
-.. .+. .....-.+++. -++++++.|+ ++ .+.+||+.+.. ...+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 322 111 01111122222 2455555554 32 46778876541 11111000 00011112222 256666
Q ss_pred EEEEcC----CcEEEEECCCCcEEEEccC-----CCCeeEEEEeCCCCEEEEEECC
Q 004327 708 LVIGCY----ETLELWNMTENKTLTLSAH-----DKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 708 ~sgs~d----g~I~IwDl~~~~~~~l~~h-----~~~V~slafspdg~~LaSgs~D 754 (761)
++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 666654 4689999988876644321 1111222 23356777777753
No 440
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.70 E-value=2 Score=49.12 Aligned_cols=267 Identities=13% Similarity=0.016 Sum_probs=132.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
.+|..+.|...|. |.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+.+| |.+.+.+.....-.
T Consensus 165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 4588888888774 55566555 6677777777665443333 556665554444 577888777 67776665222111
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQ---SGATQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~~~~---~~i~~l~fspd~~~Llags~dg~I~IwD 634 (761)
...-..+.|..+.-...|... .|+..|-.+ +........ ...+.+ +.+.++..+.+ +.+.+++.++.+.+-+
T Consensus 241 ~~~lp~~~I~ll~qD~qG~lW--iGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~ 316 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGELW--IGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLT 316 (671)
T ss_pred CCCCcchheeeeecccCCCEE--Eeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEec
Confidence 111123445544444444332 355444332 233322221 111111 22344444444 4567777777666655
Q ss_pred CCCCeEEEEEcCCCC-CEEEEEEcC--CCC-EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 635 VETQVCRLKLQGHKN-QVHSVCWNT--SGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 635 l~t~~~i~~l~~h~~-~I~sl~~sp--dg~-~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
.+ ......+....+ .+-.++..| .+. ....-+-+.+.+-+-.++.....++.. .+..|+.+++..++. +..+
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWlg 392 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWLG 392 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEEE
Confidence 43 111111111111 111111111 011 111111222333333333222222222 235567777777555 7777
Q ss_pred EcCCcEEEEECCC-CcEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 711 GCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 711 s~dg~I~IwDl~~-~~~~~l~--~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
+..+-+..|+..+ +..+... ...++|..|-=.|+++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776677777766 4333222 2356788888888888 777888887764
No 441
>PLN02153 epithiospecifier protein
Probab=94.68 E-value=4.9 Score=44.06 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCCEEEEEECC-------CeEEEEEcCCCeEEEEeccC----Cc---ceEEEEEcCCCCEEEEEeCC-----CeEEEEec
Q 004327 490 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEEH----TQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDT 550 (761)
Q Consensus 490 dg~~Lasgs~D-------g~I~VWdl~t~~~~~~l~~h----~~---~V~~v~fspdg~~Lasgs~D-----G~I~VWDl 550 (761)
++++++.|+.+ ..+.+||+.+.+-. .+... .. ....+.+ ++++++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45566666653 35778887764322 11110 00 1222333 45677777653 35778888
Q ss_pred CCCCceeEEeec------C-CCCeEEEEEcCCCCcEEEEEeCC-----------CcEEEEECCCCeeeeEEecC----CC
Q 004327 551 ENPDYSLRTFTG------H-STTVMSLDFHPSKEDLLCSCDNN-----------SEIRYWSINNGSCAGVFKCQ----SG 608 (761)
Q Consensus 551 ~t~~~~i~~~~~------h-~~~V~sl~fsp~g~~llasgs~D-----------g~I~vWDl~t~~~~~~~~~~----~~ 608 (761)
.+... ..+.. . ...-.+++.. ++.+++.|+.+ ..|.+||+.+.+....-... ..
T Consensus 109 ~t~~W--~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 109 VKNEW--TFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred CCCEE--EEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Confidence 76543 22211 0 1111222222 24566666643 24778898876554322111 01
Q ss_pred -eeEEEEecCCCEEEEEEc-------------CCeEEEEECCCCe
Q 004327 609 -ATQMRFQPRLGRILAAAI-------------ENYISILDVETQV 639 (761)
Q Consensus 609 -i~~l~fspd~~~Llags~-------------dg~I~IwDl~t~~ 639 (761)
-.+++. -++..+++++. .+.|.+||+.+.+
T Consensus 185 ~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 185 GGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 112222 24455555442 1468889988764
No 442
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.66 E-value=4.7 Score=43.75 Aligned_cols=106 Identities=7% Similarity=-0.047 Sum_probs=53.5
Q ss_pred CCCEEEEEeCC-----CeEEEEecCCCCce--eEEeecCCCCe--EEEEEcCCCCcEEEEEeC-----CCcEEEEECCCC
Q 004327 532 SLSRLATSSAD-----RTVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG 597 (761)
Q Consensus 532 dg~~Lasgs~D-----G~I~VWDl~t~~~~--i~~~~~h~~~V--~sl~fsp~g~~llasgs~-----Dg~I~vWDl~t~ 597 (761)
++.+++.|+.+ ..+..||+.+.... ...+..-..+. .+++.. ++.+++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45666777654 35667777765431 12222111111 222222 2456666653 236888998876
Q ss_pred eeeeEEecC--CCeeEEEEecCCCEEEEEEcCC----eEEEEECCCCe
Q 004327 598 SCAGVFKCQ--SGATQMRFQPRLGRILAAAIEN----YISILDVETQV 639 (761)
Q Consensus 598 ~~~~~~~~~--~~i~~l~fspd~~~Llags~dg----~I~IwDl~t~~ 639 (761)
+....-... ......+...++..++.|+.++ .+.+||.++.+
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 554332211 1222233334556666666553 35688988754
No 443
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.64 E-value=11 Score=43.63 Aligned_cols=246 Identities=12% Similarity=0.091 Sum_probs=120.9
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCe---EEEEeccC-CcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCceeEEeec
Q 004327 488 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 488 Spdg~~Lasgs~Dg~I~VWdl~t~~---~~~~l~~h-~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~~ 562 (761)
..++..++.+..+|.+....+.... .+..+ +. ....+++.+..++ .+|+.|+.-|.=.++.+......+..-..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4467789999999999888765433 12222 22 4456677776554 47888877555444444433322222222
Q ss_pred CCCCeEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCCe---eeeEEecCCCeeEEEEecC----CCEEEE
Q 004327 563 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPR----LGRILA 623 (761)
Q Consensus 563 h~~~V~sl~fsp~---g~-------~llasgs--~Dg~I~vWDl~t~~---~~~~~~~~~~i~~l~fspd----~~~Lla 623 (761)
.-++|.++++.+. +. .++++++ .+|.++++.-.-+- ........+ +..+-.-+. ..++++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4578998888532 12 4554443 56788887432111 222222222 433322222 345555
Q ss_pred EEcCCeEEEEECC---CCeEEEEEc--C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec-CCCc
Q 004327 624 AAIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 694 (761)
Q Consensus 624 gs~dg~I~IwDl~---t~~~i~~l~--~---h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~-~~~~ 694 (761)
+.. ..-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... .....+.. .+..
T Consensus 377 S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 544 444444442 333332221 1 11223333333 45555556667888887654 34444332 3334
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEc-----cCCCCeeEEEEeC
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 743 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-----~h~~~V~slafsp 743 (761)
|.+.++ .+.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444444 3356888888889999988777665 111 2567899988776
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.011 Score=65.49 Aligned_cols=148 Identities=12% Similarity=0.129 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-
Q 004327 524 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV- 602 (761)
Q Consensus 524 V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~- 602 (761)
.....|.+.+.-++.++.+..|..||-.... ..-...++....++|..+++.+++.+...+.+.+||+.+...-..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3455677877778888889889999865422 222224466778899998888888888899999999985432111
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 004327 603 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 674 (761)
Q Consensus 603 ~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IW 674 (761)
+.....-.-+.|++....++.+...|.+.||+..+.+.+.....|...+++++|.+.+..+..++|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111111223678888888999989999999999887777666669999999999998866655556544443
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.52 E-value=5 Score=43.54 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=48.9
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeee---eEEe-cCCCe--eEEEEecCCCEEEEEEc-----CCeEEEEECCCCeE
Q 004327 577 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC 640 (761)
Q Consensus 577 ~~llasgs~D-----g~I~vWDl~t~~~~---~~~~-~~~~i--~~l~fspd~~~Llags~-----dg~I~IwDl~t~~~ 640 (761)
+.+++.|+.+ ..+..||+.+.+.. ..+. .+... .+++. -++..++.|+. ...+.+||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666643 35777787765531 1111 11111 22222 24455555554 24688899886532
Q ss_pred --EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEECCCC
Q 004327 641 --RLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 679 (761)
Q Consensus 641 --i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IWdl~s~ 679 (761)
+..+... ......+..-++++++.|+ ++ .+.+||+.+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2222211 1112222234566666665 43 3568888764
No 446
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.49 E-value=0.097 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 512 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~ 512 (761)
...|.+++|+|...+||.|+.+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 346999999999999999999999999998 444
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=1.4 Score=51.92 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=79.5
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-cCCcceEEEEEc--CCCCEEEEEeCCCeEE
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVR 546 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fs--pdg~~Lasgs~DG~I~ 546 (761)
.....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.
T Consensus 20 ~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred EEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 3344444444556666666656555555556789999999877553332 456789999995 5888999999999999
Q ss_pred EEecC-----CCC---ceeE--EeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004327 547 VWDTE-----NPD---YSLR--TFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 595 (761)
Q Consensus 547 VWDl~-----t~~---~~i~--~~~~h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~ 595 (761)
+|.-- +.. ..++ .+..|+ .+|.+..|.++| .+++++ ++.+.|+|-.
T Consensus 100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEe--CCEEEEECCC
Confidence 98532 111 1122 223344 679999999986 344333 4578888743
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.38 E-value=0.024 Score=66.61 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=104.7
Q ss_pred CCeEEEEEcCCCeE-EEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCC--CC----ceeEEeecCCCCeEEEE
Q 004327 500 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 571 (761)
Q Consensus 500 Dg~I~VWdl~t~~~-~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t--~~----~~i~~~~~h~~~V~sl~ 571 (761)
.+-|++-+..+.-. ...+++..+.|-.+.|-. +...+. -.-|.+.|||++- ++ ..++........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776654321 123467778888888854 222222 2336788998763 22 12233333344455566
Q ss_pred EcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 004327 572 FHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 572 fsp~--g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~ 648 (761)
|+|- ....++.+..+++|++.+++.... ..+. +...+..++|...|-..+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~------------------------- 241 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLA------------------------- 241 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhe-------------------------
Confidence 6652 235666777788888877764332 1111 3334555554433211111
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEECCC--CCCceeEEEeecCCCc-eEEEEEeCC-------CC--EEEEEEcC-C
Q 004327 649 NQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHELSCTGNK-FHSCVFHPT-------FP--SLLVIGCY-E 714 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s--~~~~~~i~~l~~~~~~-I~sl~fspd-------g~--~L~sgs~d-g 714 (761)
..+|||+.|+... ||.+++|-+.- .....|++.+..|... -.|.-|+.. +. ++++++.- .
T Consensus 242 ------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nr 315 (1283)
T KOG1916|consen 242 ------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNR 315 (1283)
T ss_pred ------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCc
Confidence 1678898888877 88877776532 1223567777766633 222223222 11 23333333 3
Q ss_pred cEEEEECCCCcEE
Q 004327 715 TLELWNMTENKTL 727 (761)
Q Consensus 715 ~I~IwDl~~~~~~ 727 (761)
.+++|.....+|+
T Consensus 316 e~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 316 EEKFWAEAPWQCL 328 (1283)
T ss_pred ceeEeeccchhhh
Confidence 7889987777665
No 449
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.37 E-value=0.99 Score=53.11 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=47.1
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEc--CCCCcEEEEEeCCCcEEEEEC
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 594 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fs--p~g~~llasgs~Dg~I~vWDl 594 (761)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++|- ...|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEc
Confidence 3455555555455444544556899999997664444333557889999996 67766775554 677777753
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=94.33 E-value=2 Score=49.64 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=69.3
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeE-EEEecCCCEEEEEEcC---CeEEEEECCCCeEEEE--EcCCC
Q 004327 577 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 648 (761)
Q Consensus 577 ~~llasgs~D--g~I~vWDl~t~~~~~~~~~~~~i~~-l~fspd~~~Llags~d---g~I~IwDl~t~~~i~~--l~~h~ 648 (761)
+.+.+.|+.+ ..+..||..+++....-........ ....-++..+++|+.+ ..+..||.++..-... +....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 5666677643 4588888876654433222222211 1222344556666654 3577888876532221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCC
Q 004327 649 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 723 (761)
Q Consensus 649 ~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~ 723 (761)
.. .+++ .-++++++.| |.+.+||..+. ....+..+....... .++ .-+++..++|+.+ ..|.+||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~-~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSN-TWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCC-cEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2355555555 34677888654 222222222111222 222 2355656666643 3577788776
Q ss_pred CcEE
Q 004327 724 NKTL 727 (761)
Q Consensus 724 ~~~~ 727 (761)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6543
No 451
>PLN02193 nitrile-specifier protein
Probab=94.31 E-value=4.2 Score=46.79 Aligned_cols=191 Identities=6% Similarity=-0.018 Sum_probs=90.3
Q ss_pred CCCEEEEEeCC-------CeEEEEecCCCCceeEEeec-CCC--C-eEEEEEcCCCCcEEEEEeCC-----CcEEEEECC
Q 004327 532 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--T-VMSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 595 (761)
Q Consensus 532 dg~~Lasgs~D-------G~I~VWDl~t~~~~i~~~~~-h~~--~-V~sl~fsp~g~~llasgs~D-----g~I~vWDl~ 595 (761)
++.+++.|+.+ ..+.+||+.+.........+ ... . -.+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34555666643 24778888765432211111 001 0 1112222 34666677654 368889998
Q ss_pred CCeeeeEEec---CCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCC
Q 004327 596 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 660 (761)
Q Consensus 596 t~~~~~~~~~---~~~--i~~l~fspd~~~Llags~d-----g~I~IwDl~t~~~i~~l~-----~h~~~I~sl~~spdg 660 (761)
+.+....... +.+ ..++. .-++..++.++.+ ..+.+||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7665443221 111 11222 2244555566543 347788887754221100 00111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEECCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEcC--------------CcEEEE
Q 004327 661 EYLASVS-D----ELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELW 719 (761)
Q Consensus 661 ~~Lasgs-D----g~I~IWdl~s~~~~~~i~~l~--~~~~~I~sl~fspdg~~L~sgs~d--------------g~I~Iw 719 (761)
++++.++ + ..+.+||+.+.. ...+.... .......+++ .-+++.+++|+.. ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEE
Confidence 6666555 4 368999987642 12221110 0111122222 3355666666643 258899
Q ss_pred ECCCCcEEEE
Q 004327 720 NMTENKTLTL 729 (761)
Q Consensus 720 Dl~~~~~~~l 729 (761)
|+.+.....+
T Consensus 408 D~~t~~W~~~ 417 (470)
T PLN02193 408 DTETLQWERL 417 (470)
T ss_pred EcCcCEEEEc
Confidence 9988766533
No 452
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.22 E-value=9.8 Score=45.05 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=67.9
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC-CCCCEEEEEEcCC------CCEEEEEe--CC-
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNTS------GEYLASVS--DE- 669 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~--~i~~l~~-h~~~I~sl~~spd------g~~Lasgs--Dg- 669 (761)
.++....+..+.|..++..+++...+|.|.+||...+. .+..+.. +...+..-+|-++ ..++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44566889999999999999999999999999993321 1112211 2222211133222 23444333 22
Q ss_pred --eEEEEECCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 670 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 670 --~I~IWdl~s~~~~~~i~~l~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.++++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++...+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2222222 222233333333333334444 7779999999877655
No 453
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.18 E-value=17 Score=45.21 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=79.6
Q ss_pred CEEEEEEc---------CCeEEEEECCC-----Ce-----EEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 619 GRILAAAI---------ENYISILDVET-----QV-----CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 619 ~~Llags~---------dg~I~IwDl~t-----~~-----~i~~l--~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
.++++|+. .|.++|||+-. ++ .++.+ +.-++.|..+|= -+| +|+++..-+|.||++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence 45666653 47899998632 21 12221 235567776663 234 4666667789999995
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc-EEEEc---cCCCCeeEEEEeCCCC--EEEEE
Q 004327 678 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLS---AHDKLVSSLAASTVNG--MVASA 751 (761)
Q Consensus 678 s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~-~~~l~---~h~~~V~slafspdg~--~LaSg 751 (761)
.......+..+ .-++......--.++|++|.-...|.+.-..... .+.+. ...-.+.++.|--||. +++++
T Consensus 1125 r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1125 RDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred cCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence 44322222222 2223333333345667777777777766554332 22222 2234578888887776 77888
Q ss_pred ECCCeEEEc
Q 004327 752 SHDKCVKIW 760 (761)
Q Consensus 752 s~DG~I~IW 760 (761)
..|+.|++|
T Consensus 1202 Da~rNi~vy 1210 (1366)
T KOG1896|consen 1202 DADRNIHVY 1210 (1366)
T ss_pred cCCCcEEEE
Confidence 899999986
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=4.4 Score=47.79 Aligned_cols=238 Identities=12% Similarity=0.076 Sum_probs=108.2
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE--EeecCCCCeEEEEEcCCCCc
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 578 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~--~~~~h~~~V~sl~fsp~g~~ 578 (761)
-.|+||++. |..+..+.-....+-.+.|+.+. .|++...||+++||++-....... -+......|..+.|..+| -
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-V 140 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-V 140 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-e
Confidence 468888864 45554443333478899999664 566677999999999874322110 011122334444444443 2
Q ss_pred EEEEEeCCCcEEEE-ECCCCeeeeEEec-CC---CeeEEEEecC-CC--EEEEEEcCCeEEEEECCCC-eEEEEEcCCCC
Q 004327 579 LLCSCDNNSEIRYW-SINNGSCAGVFKC-QS---GATQMRFQPR-LG--RILAAAIENYISILDVETQ-VCRLKLQGHKN 649 (761)
Q Consensus 579 llasgs~Dg~I~vW-Dl~t~~~~~~~~~-~~---~i~~l~fspd-~~--~Llags~dg~I~IwDl~t~-~~i~~l~~h~~ 649 (761)
.+.+. +|.|.+- +... ...+..+. +. ...|....++ .. .++-....-...++-.+.. .....+.....
T Consensus 141 avlt~--~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEEec--CCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22222 3444333 3222 11111111 00 1122222222 11 1111110000111111111 11112222235
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.+..+..||+..+|+.-. +|.|.+-++... .++-++.+.. .....++|.-+. -++.+.+..|.++.-......
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~ 292 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQ 292 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCccc
Confidence 677899999999999888 888888887654 3333333221 112245555444 233333334444443333222
Q ss_pred EEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 728 TLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 728 ~l~~h~~~V~slafspdg~~LaSgs 752 (761)
-+..+.. + +.--+||-.|+|.+
T Consensus 293 f~yd~t~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 293 FYYDETA-I--LSAEVDGVRIITST 314 (829)
T ss_pred cccCCCc-e--eeeccCeeEEeccc
Confidence 2223322 2 44455665555543
No 455
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.09 E-value=9.4 Score=44.31 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=112.3
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCce-eEEeecC-CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEec
Q 004327 530 SPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGH-STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKC 605 (761)
Q Consensus 530 spdg~~Lasgs~DG~I~VWDl~t~~~~-i~~~~~h-~~~V~sl~fsp~g~~llasgs--~Dg~I~vWDl~t~~~~~~~~~ 605 (761)
..++..++.+..+|.+....+...... ...+.+. .....++++..++..+++.|+ .|+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 446778999999999998887654311 2222222 455677777766534555665 456666677555666777777
Q ss_pred CCCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEcCC--CCCEEEEEEcC-CCCEEEEEe
Q 004327 606 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS 667 (761)
Q Consensus 606 ~~~i~~l~fspd----~~------~Llags~---dg~I~IwDl~t~~~--i~~l~~h--~~~I~sl~~sp-dg~~Lasgs 667 (761)
-+++.++++.+. .. .+++++. +|.++++.-.-+-. ......- -..++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788988888632 22 5666654 67888874322211 1111112 22344443322 256777777
Q ss_pred CCeEEEEECCCCCCceeEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE-E-ccCCCCeeEEE
Q 004327 668 DELVRVWSIGSGSKGECIHE-----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA 740 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~-----l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l-~~h~~~V~sla 740 (761)
...-+++.+........+.. +......+.+..+. +..++=.+.. .|++.+....+... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 56666666642111122211 11112223322332 3334444443 58888887776662 2 23445566655
Q ss_pred EeCCCCEEEEEECCCeEEEc
Q 004327 741 ASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 741 fspdg~~LaSgs~DG~I~IW 760 (761)
+. +.+++.+-.+|.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 54 3556666666766654
No 456
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.07 E-value=1.8 Score=40.54 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=79.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-------eeEEeecCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEE
Q 004327 525 TDVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 525 ~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-------~i~~~~~h~~~V~sl~fsp----~g~~llasgs~Dg~I~vWD 593 (761)
..-+|......|++++..|.|.|++...... .+..+ .....|++|+--+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3446666666788888999999998764321 12333 3456788886543 3456676776 66899999
Q ss_pred CCCCeeeeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 594 INNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 594 l~t~~~~~~~~~~~~i~~l~fsp---d~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
+....-+..-..+.++.++.+-. ...-++..+.+..|.-||.+..+..++..
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 99877766666668888877633 22346666667788888887766665543
No 457
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.02 E-value=5.8 Score=44.18 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=19.3
Q ss_pred cEEEEECCCCeeeeEEecCC-C--eeEEEEecCCCEEEEEEc
Q 004327 588 EIRYWSINNGSCAGVFKCQS-G--ATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~-~--i~~l~fspd~~~Llags~ 626 (761)
.|.+||..+.+....-.... . ..++.. .++..+++++.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence 58889988766554322221 1 122322 24455666654
No 458
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=93.98 E-value=16 Score=42.88 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=112.7
Q ss_pred ceEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEE--E
Q 004327 523 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYW--S 593 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~-----DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg--~I~vW--D 593 (761)
.+-.++.+||.+++|-+-. .-++++-|+.++......+. +....++|.+++..++++-..++ .=++| .
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 4566788999998876533 24789999998775333333 34677899999999988876554 22333 3
Q ss_pred CCC--CeeeeEEecCCC--eeEEEEecCCCEEEEEEc---CCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 594 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAI---ENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 594 l~t--~~~~~~~~~~~~--i~~l~fspd~~~Llags~---dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg~~La 664 (761)
+.+ ..-...+..... ...+.-+....+|+.... .+.+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 222223332233 233444455566666654 35788888775432 222221112122222 2234333
Q ss_pred EE-e-CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcEE
Q 004327 665 SV-S-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 727 (761)
Q Consensus 665 sg-s-Dg-~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~~ 727 (761)
.- . +| ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33 3 55 556655443111123345556666666666777777777777665 7888998876655
No 459
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.82 E-value=12 Score=40.55 Aligned_cols=233 Identities=14% Similarity=0.009 Sum_probs=113.1
Q ss_pred CCCEEEEEECCCeEEEEEcCC--CeEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCc-----------
Q 004327 490 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 555 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t--~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~----------- 555 (761)
++++|+.|+.+|...+. +.. .+....+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988865555 543 3333333 456899999998877666654 334499999843221
Q ss_pred ---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEE-----ecCCCeeEEEEecC--CCEE
Q 004327 556 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF-----KCQSGATQMRFQPR--LGRI 621 (761)
Q Consensus 556 ---~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~----~~~~~~-----~~~~~i~~l~fspd--~~~L 621 (761)
.......|......+.+......+++++.....|.++..... ...+.+ ..+..+..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 001122344333334443322233334444566666544321 112111 11122333333332 3567
Q ss_pred EEEEcCCeEEEEECCC--Ce---EE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 622 LAAAIENYISILDVET--QV---CR--LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 622 lags~dg~I~IwDl~t--~~---~i--~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
++|+..+...++++.. .. .. ...........++..-+++.+++ +.|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 7776653344444432 10 00 00111110233343344555554 4455555555543111 1111121 1334
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 731 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~ 731 (761)
..++++. .++|++... ..|.|+++.++..+....
T Consensus 246 p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 246 PESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA 279 (302)
T ss_pred ccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence 4566666 356666654 459999999998774433
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.77 E-value=0.77 Score=51.46 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=93.6
Q ss_pred EEEcCC-CCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC-------EEEEEEcCCeEEEEECCCCe-E
Q 004327 570 LDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQV-C 640 (761)
Q Consensus 570 l~fsp~-g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~-------~Llags~dg~I~IwDl~t~~-~ 640 (761)
+-.+.+ ...++..|+....++-.|++.|+.+..+..+..+ -+.|.|... .-++|-.+..|.-.|.+-.- .
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 334433 3344445666678888999999999999987777 777877532 24566677777777776432 1
Q ss_pred EEEEcCCCCCEEEEEEc----CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCc
Q 004327 641 RLKLQGHKNQVHSVCWN----TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 715 (761)
Q Consensus 641 i~~l~~h~~~I~sl~~s----pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~ 715 (761)
+.... ....++.-.|+ ...-||++++ .|-|++||--.. ..-..+.+.+..|..+..+.+|++|++.+.. .
T Consensus 551 i~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y 625 (776)
T COG5167 551 IKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCKN-Y 625 (776)
T ss_pred eeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeecc-e
Confidence 11111 11222222222 3445788888 889999996432 2333455667889999999999987776654 6
Q ss_pred EEEEEC
Q 004327 716 LELWNM 721 (761)
Q Consensus 716 I~IwDl 721 (761)
|.+.|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 666665
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.77 E-value=22 Score=43.69 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=70.6
Q ss_pred CCeEEEEECCC-CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004327 627 ENYISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 627 dg~I~IwDl~t-~~~i~~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd 703 (761)
+|.++.|++-. ++.+.-+. .-.+.|. +..|...++.+|-...+++||+......+ ..++......|..+.+ .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEee--c
Confidence 34477776543 33222111 1233444 44577778887778899999997642211 1111222344555555 4
Q ss_pred CCEEEEEEcCCcEE--EEECCCCcEEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 704 FPSLLVIGCYETLE--LWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 704 g~~L~sgs~dg~I~--IwDl~~~~~~~l~~--h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
+..|++|.....|. .|+-.++..+.+.. -...|+++.+- |...+|.+..=|.+.+
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 55688888777555 45555666665443 23456666653 4456777776676654
No 462
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=2.4 Score=42.64 Aligned_cols=177 Identities=13% Similarity=0.066 Sum_probs=99.8
Q ss_pred CCCEEEEEeC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe
Q 004327 532 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 609 (761)
Q Consensus 532 dg~~Lasgs~--DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i 609 (761)
++.++.+.+. ...|++||+++++.....-.. ...+..=-...-++.+..-.-.+|.-.++|.++.+++..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556665554 347999999987753332222 1222222222224455555667899999999999999888877777
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----EEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 683 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~----~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~ 683 (761)
..++.. +..|+.+.....++.-|.++..... ++.+ .-..++.+.|- +|.+++-.- +..|...+..+++...
T Consensus 134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 666654 3457777767788888877643322 2222 11223344443 455554444 4455555555552211
Q ss_pred eEE---------EeecCCCceEEEEEeCCCCEEEEEEc
Q 004327 684 CIH---------ELSCTGNKFHSCVFHPTFPSLLVIGC 712 (761)
Q Consensus 684 ~i~---------~l~~~~~~I~sl~fspdg~~L~sgs~ 712 (761)
.+. .-..+.+..+.+++.|+...++..+.
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 111 11123445678889888865555543
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.60 E-value=1.4 Score=49.52 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=90.1
Q ss_pred cCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC--------CEEEEEeCCeEEEEECCCCCCceeEE
Q 004327 616 PRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG--------EYLASVSDELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 616 pd~~~Lla-gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg--------~~LasgsDg~I~IWdl~s~~~~~~i~ 686 (761)
.+.+.|+. +.....++-.|++.|+.+..+..|... -+.|.|+. ..|+.-++..|.-.|.+-......+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 34444443 334578888999999999999877665 46777753 35666667777777776543212222
Q ss_pred Eee--cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 687 ELS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 687 ~l~--~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
... ...+.+.+..-. ...||++++..|.|++||.-..+.. .+.+....|..+..+.+|++|++.|..
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 221 122334443333 3457999999999999997655444 566778889999999999987776654
No 464
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.60 E-value=8.2 Score=42.27 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=21.9
Q ss_pred cEEEEECCCCcEEEEccCCCC-eeEEEEeCCCCEEEEEECC
Q 004327 715 TLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASHD 754 (761)
Q Consensus 715 ~I~IwDl~~~~~~~l~~h~~~-V~slafspdg~~LaSgs~D 754 (761)
.+.+||..+.+...+...... -...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 467888877654422222211 1222334567888888765
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.56 E-value=3.4 Score=41.96 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=81.6
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--C---cEEEE---ECC--CCeeee--
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG-- 601 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D--g---~I~vW---Dl~--t~~~~~-- 601 (761)
+.|+.+.....|.+|++.........-...-+.|..+.++..|++++..=.+. . .+|+| +.. ....++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566778999999954544443333458899999999987666433221 2 45554 222 111111
Q ss_pred ---------------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEEc----CC-CC
Q 004327 602 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GH-KN 649 (761)
Q Consensus 602 ---------------------~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~------i~~l~----~h-~~ 649 (761)
.+.....+.+++..|-.+.|++|+. +.+.+|.+..... +..|. .| .+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1122345778888887777777664 6777777654322 11121 11 11
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 650 -QVHSVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 650 -~I~sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
....+++. +.|+|..++..++++.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 13344443 568888888888887653
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=2.1 Score=43.02 Aligned_cols=170 Identities=8% Similarity=-0.006 Sum_probs=91.9
Q ss_pred CcEEEEEe--CCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEE
Q 004327 577 EDLLCSCD--NNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 577 ~~llasgs--~Dg~I~vWDl~t~~~~~~~~~~~-~i~~l~fspd~~~Lla-gs~dg~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
++++.+.+ ....|++||+.+++.+...+... .+..=-...-++.+.. .-.+|.-.+||.++.+++..+. ..+.=+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 46666655 34579999999998887766441 2211111122344444 4458899999999988877665 444556
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 004327 653 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 728 (761)
Q Consensus 653 sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~---I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 728 (761)
.++. |++.|+.++ ..+++.-|..+......+.... .+.+ ++.+.|- +|...+-.-.+..|...|..+|+++.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 6664 444454443 5567666665532222222111 1111 2222232 33333333334455555666665552
Q ss_pred E-------------ccCCCCeeEEEEeCCCC-EEEEE
Q 004327 729 L-------------SAHDKLVSSLAASTVNG-MVASA 751 (761)
Q Consensus 729 l-------------~~h~~~V~slafspdg~-~LaSg 751 (761)
. ..|....+.+++.|+.. +++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 23556788999999884 55554
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.23 E-value=16 Score=40.52 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=103.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEe----cCCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 004327 577 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ----PRLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 644 (761)
Q Consensus 577 ~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fs----pd~~~--Llags~-d---g~I~IwDl~--t~~~i~~l 644 (761)
..+++....++-+.+||+. |+.+..+.. +.++.+..- -.+.. |++++. + ..|++|.+. ++.. ..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEc
Confidence 4566677788899999998 555655542 344433332 13333 444443 2 468888664 4433 332
Q ss_pred cC-------CCCCEEEEEEc--C-CCCEEEEE-e-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 645 QG-------HKNQVHSVCWN--T-SGEYLASV-S-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 645 ~~-------h~~~I~sl~~s--p-dg~~Lasg-s-Dg~I~IWdl~s~~~----~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
.. ....++.+|+. + +|.+.+.. . +|.+..|.+..... ...++.|.. ...+..|+......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777763 3 46554444 4 88888888753222 245666654 45899999999999999
Q ss_pred EEEcCCcEEEEECCCC-----cEEEE-c--cCCCCeeEEEEeC--CC-CEEEEEE-CCCeEEEcC
Q 004327 709 VIGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 761 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~-----~~~~l-~--~h~~~V~slafsp--dg-~~LaSgs-~DG~I~IWd 761 (761)
++-++--|.-|+.+.. ..+.. . .....|-.|++-. ++ .||+..+ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999988887532 22222 1 2345677787753 33 3555555 577788875
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.14 E-value=6.4 Score=40.03 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=66.7
Q ss_pred CEEEEEECCCeEEEEEcC--CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---C---eEEEE---ecC-CCCceeE-
Q 004327 492 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW---DTE-NPDYSLR- 558 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~--t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G---~I~VW---Dl~-t~~~~i~- 558 (761)
+.|+.+...+.|.+|++. ......+|..- +.|..+.++..|+||+|--.+ . .+|+| +.. ....+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444667899999987 34556666544 789999999999999997443 2 56664 222 1111111
Q ss_pred Eeec---------------------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004327 559 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 597 (761)
Q Consensus 559 ~~~~---------------------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~ 597 (761)
...| -...+.+++..|..+++++++ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 1112 234577888888878888555 668999987643
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.99 E-value=2.8 Score=49.89 Aligned_cols=110 Identities=8% Similarity=0.142 Sum_probs=68.8
Q ss_pred eEEEEEcC-CCCcEEEEEeCCCcEEEEECCC-------C-------------eeeeEEecCCCeeEEEEe--cCCCEEEE
Q 004327 567 VMSLDFHP-SKEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILA 623 (761)
Q Consensus 567 V~sl~fsp-~g~~llasgs~Dg~I~vWDl~t-------~-------------~~~~~~~~~~~i~~l~fs--pd~~~Lla 623 (761)
|+.|.... .+..+|+.|.+||.|.+|.++. . ++...+.....+..++++ ...+.|++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444332 2456888899999999997521 0 122334455667888888 66666666
Q ss_pred EEcCCeEEEEECCC--CeE-EEEEcCCCCCEEEEEEcCCC-----C-EEEEEe-CCeEEEEEC
Q 004327 624 AAIENYISILDVET--QVC-RLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 676 (761)
Q Consensus 624 gs~dg~I~IwDl~t--~~~-i~~l~~h~~~I~sl~~spdg-----~-~Lasgs-Dg~I~IWdl 676 (761)
++....|.||-... .+. ...-..|...|.+|+|-++. . +|++++ .|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66667777765433 111 11111266678899997643 2 677777 998888877
No 470
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.93 E-value=26 Score=41.94 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=81.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCe--EEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC------CCe--
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT-- 544 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~--I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~------DG~-- 544 (761)
...+...+..+.|+|||..++..+.++. ..+|-+.... .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 3456667888999999999988874332 3344332221 33445567888899998888776211 222
Q ss_pred -----EEEEecCCC-Cc----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---C---cEEEEECCCCeeeeE
Q 004327 545 -----VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCAGV 602 (761)
Q Consensus 545 -----I~VWDl~t~-~~----------~i~~~~~h~~~V~sl~fsp~g~~llasgs~D---g---~I~vWDl~t~~~~~~ 602 (761)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++.....
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL 211 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEE
Confidence 334433222 11 1112222344566666666544444333222 1 223333335555555
Q ss_pred EecCCCeeEEEEecCCCEEEEEEc
Q 004327 603 FKCQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 603 ~~~~~~i~~l~fspd~~~Llags~ 626 (761)
......+..+.|.++++.++..+.
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEecc
Confidence 555566888889999886555443
No 471
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.77 E-value=16 Score=39.91 Aligned_cols=40 Identities=5% Similarity=-0.081 Sum_probs=20.2
Q ss_pred CcEEEEECCCCeeeeEEecCC--CeeEEEEecCCCEEEEEEc
Q 004327 587 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 587 g~I~vWDl~t~~~~~~~~~~~--~i~~l~fspd~~~Llags~ 626 (761)
..|.+||..+.+....-.... .........++..+++++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889988765544322221 1112222335566666664
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=1.5 Score=48.63 Aligned_cols=104 Identities=11% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC-
Q 004327 647 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE- 723 (761)
Q Consensus 647 h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~- 723 (761)
..++|.++.|++|.+.|++-- |++|.+++.-.... ....++.......|...+|+... -++.....| +.+|-+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence 456999999999999999987 99999998843211 12222333344558889998774 466666655 55554432
Q ss_pred -CcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 724 -NKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 724 -~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
........|...|+-..|.++...+.-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 33335567888888889998887554443
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=3.6 Score=48.51 Aligned_cols=91 Identities=10% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---EcCCCCCEEEEEEcCCCC
Q 004327 586 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGE 661 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~---l~~h~~~I~sl~~spdg~ 661 (761)
.-.|+||++. |..+..+. .++.+..+.|+.+ ..|++...+|.++||++-....... +......|..+.|..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3457778776 44444333 3347888999877 6788999999999999864322211 112223455555555665
Q ss_pred EEEEEeCCeEEEEECCC
Q 004327 662 YLASVSDELVRVWSIGS 678 (761)
Q Consensus 662 ~LasgsDg~I~IWdl~s 678 (761)
.+.+.++..+.+.++..
T Consensus 141 avlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEE 157 (829)
T ss_pred EEEecCCcEEEEcCCCc
Confidence 55555455555555543
No 474
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.60 E-value=0.36 Score=36.80 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
...|.+++|+|..++||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 475
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.92 Score=55.31 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=85.2
Q ss_pred CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEE-----EEEcC------CCCCEEEEEEcCCCCE--EEEEeCCeEE
Q 004327 608 GATQMRFQPRLGRILAAAI--ENYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGEY--LASVSDELVR 672 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i-----~~l~~------h~~~I~sl~~spdg~~--LasgsDg~I~ 672 (761)
.+..+...+|....++... +-.|++||+++-... .-+.. ......++.|.|.-.. +++-.|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444555566555444433 337889998753211 11111 2234567888886432 3333388888
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc----cCCCCeeEEEEeCCCCEE
Q 004327 673 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 673 IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~----~h~~~V~slafspdg~~L 748 (761)
|..+.-.. ..+.. -......++++|+|.|+-+++|-..|++.-|...-.....+. .....|.+|+|-....+|
T Consensus 182 V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88775321 11111 123566899999999999999999999988875443222111 114679999998777766
Q ss_pred EEE
Q 004327 749 ASA 751 (761)
Q Consensus 749 aSg 751 (761)
|+-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 476
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.43 E-value=10 Score=42.15 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEECCCCcEEEEccCCC-CeeEEEEeCCCCEEEEEECC
Q 004327 716 LELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 716 I~IwDl~~~~~~~l~~h~~-~V~slafspdg~~LaSgs~D 754 (761)
+.+||..+++...+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678887766442221111 11122334457777877753
No 477
>PRK05560 DNA gyrase subunit A; Validated
Probab=92.40 E-value=19 Score=44.34 Aligned_cols=226 Identities=9% Similarity=0.026 Sum_probs=110.4
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCc--------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE---CCCC-
Q 004327 530 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNG- 597 (761)
Q Consensus 530 spdg~~Lasgs~DG~I~VWDl~t~~~--------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD---l~t~- 597 (761)
-++...+++.+.+|.|+-.++.+... ....+... ..+..+........+++..+ .|.++... +...
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 44667888999999998876543211 01112222 33444444444455554444 56655553 3322
Q ss_pred -----eeee---EEecCCCe-eEEEEe--cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcCC
Q 004327 598 -----SCAG---VFKCQSGA-TQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 598 -----~~~~---~~~~~~~i-~~l~fs--pd~~~Llags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~spd 659 (761)
..+. .+.....+ ..+.+. ++...+++.+.+|.++-.++.. +.....+... +.+..+.....
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~ 651 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDG 651 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCC
Confidence 2211 11222223 334444 2567899999999988776543 2233344433 34444433333
Q ss_pred CC-EEEEEeCCeEEEEECCCC------CCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCcEEEEECCCC-------
Q 004327 660 GE-YLASVSDELVRVWSIGSG------SKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN------- 724 (761)
Q Consensus 660 g~-~LasgsDg~I~IWdl~s~------~~~~~i~~l~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~~~------- 724 (761)
.. +++..+.|.+..+.+..- ........+.. +..|..+ .+.++..+++..+..|.++...+..-
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 34 444444776655554321 01112222322 2334443 44444447888999998877754321
Q ss_pred c-EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 725 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 725 ~-~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
+ .. .+....+.+..+........++..+.+|.+..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1 11 22222334444333333344555666776543
No 478
>PRK05560 DNA gyrase subunit A; Validated
Probab=92.05 E-value=38 Score=41.81 Aligned_cols=260 Identities=12% Similarity=0.062 Sum_probs=133.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCeE---------EEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec---CCC
Q 004327 486 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP 553 (761)
Q Consensus 486 afSpdg~~Lasgs~Dg~I~VWdl~t~~~---------~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl---~t~ 553 (761)
.+-++...+++-+.+|.|+--++..... ...++.. ..+..+........|+..+..|.+....+ ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4456777888999999999886654321 1122222 34444444455566777777787666543 322
Q ss_pred C-----cee---EEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecC
Q 004327 554 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 617 (761)
Q Consensus 554 ~-----~~i---~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vWDl~t~-------~~~~~~~~~~~i~~l~fspd 617 (761)
. ..+ ..+.....-|.++.+... ....++..+.+|.++-.++... .....+.....+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222223444444421 2345667888999888776432 22222233334444444555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEE-EEcCCCCEEEEEe-CCeEEEEECCCC---C---
Q 004327 618 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSG---S--- 680 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl-~~spdg~~Lasgs-Dg~I~IWdl~s~---~--- 680 (761)
...+++.+..|.+..+.+.. |.....+.. ...|.++ .+.++..+++..+ .|.++...+..- .
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 57788888888877776532 222223322 2334443 4444433555555 888877765321 1
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEE
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 750 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaS 750 (761)
.......+......+..+........+++.+.+|.+..++...-.. .......|..+.+..++ .++.
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~D-~V~~ 797 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEGD-KVVS 797 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCCC-EEEE
Confidence 1122222322234444443334445577778888777777643221 12233456666664433 3443
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.03 E-value=3.9 Score=48.21 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE--EEec-cCCcceEEEEEcC------CCCEEEEEeC-C---CeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE-EHTQWITDVRFSP------SLSRLATSSA-D---RTV 545 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~--~~l~-~h~~~V~~v~fsp------dg~~Lasgs~-D---G~I 545 (761)
.+.|..|.|..+++.+++...+|.|.+||...+... ..+. .+...|.--+|-+ ...++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 567999999999999999999999999999332221 1221 1222111112322 2345554444 2 256
Q ss_pred EEEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-----eEEEEec-
Q 004327 546 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQP- 616 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i-----~~l~fsp- 616 (761)
+++.+......+..+. -+........|+...+.+..- .+++|.+|++...+....+....-+ ..+.+.|
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722222222222 122223333444333444433 5789999999888877776654222 1223333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 617 RLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 617 d~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
..++ +.-+.++.|+++|+.-...+..+.
T Consensus 287 s~nR-vLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNR-VLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCe-EEEEcCCEEEEEeehhhhhhhhhh
Confidence 3233 344566899999987655544443
No 480
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.00 E-value=27 Score=41.71 Aligned_cols=146 Identities=12% Similarity=0.151 Sum_probs=77.9
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCe--EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE-----eCCCc-
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 588 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~--I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasg-----s~Dg~- 588 (761)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++.+..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456677889999999999988874432 3444443221 2333445677788888876666511 11222
Q ss_pred ------EEEEECCCC-eee------------eEEecCCCeeEEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 004327 589 ------IRYWSINNG-SCA------------GVFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 642 (761)
Q Consensus 589 ------I~vWDl~t~-~~~------------~~~~~~~~i~~l~fspd~~~Llags~dg-------~I~IwDl~t~~~i~ 642 (761)
+.+|....+ ... ........+....+++++..++....+. ...++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 233333222 111 1111223345556666555555544432 2333333233 333
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 643 KLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 643 ~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
.+......+..+.|.++++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555544
No 481
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=91.96 E-value=39 Score=41.70 Aligned_cols=264 Identities=11% Similarity=0.070 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE---------EEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC-
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 551 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~---------~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~- 551 (761)
|..-.+.++...+++.+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+......
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33345566677788899999999886654322 112222 2344444444556667777777877665432
Q ss_pred --CCCc-----ee---EEeecCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCee-------eeEEecCCCeeEEE
Q 004327 552 --NPDY-----SL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMR 613 (761)
Q Consensus 552 --t~~~-----~i---~~~~~h~~~V~sl~fsp-~g~~llasgs~Dg~I~vWDl~t~~~-------~~~~~~~~~i~~l~ 613 (761)
.... .+ ..+.....-|.++.+.. +...+++..+.+|.++-.++..... ...+.....+..+.
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~ 645 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR 645 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence 2110 11 11222222344444322 1234566778899999887754221 11222233444444
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC----
Q 004327 614 FQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG---- 679 (761)
Q Consensus 614 fspd~~~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~---- 679 (761)
.......+++.+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-
T Consensus 646 ~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~ 724 (800)
T TIGR01063 646 LTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETS 724 (800)
T ss_pred EeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccC
Confidence 444556788888888777665432 22222232 233455554444454555555 887777765321
Q ss_pred --CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEE
Q 004327 680 --SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 750 (761)
Q Consensus 680 --~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaS 750 (761)
........+......+..+....+...++..+.+|.+..++...-.. ...-...|..+.... +..++.
T Consensus 725 R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~--~gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 725 RGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE--QGRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred CCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc--cccCCCCeeeeeeCC-CCEEEE
Confidence 11112222333234454544444555678888888777777643221 112233466666643 334443
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.76 E-value=0.99 Score=46.41 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=52.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEE-------c-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 614 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 614 fspd~~~Llags~dg~I~IwDl~t~~~i~~l-------~-------~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
+..++.++++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-|++-++|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 4456789999999999999999998765432 1 245678889999999988888888899998754
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=3.8 Score=51.36 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=108.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
....++|+|.-.++|.++.+|.|++|-...-+.......-. ..+..+.|......+.+...+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 45668999999999999999999999765433332221111 1222233322223334444555666776553221
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEE-EEecCCCEEEEEEcCCeEEEEECC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQM-RFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l-~fspd~~~Llags~dg~I~IwDl~ 636 (761)
..+...+++....+- ..++.+ ..+.+++||..-........ ........ .+.+..-.+..--.+-.-..|-+.
T Consensus 113 -~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 112233444333322 112344 77888888875322111100 00000000 000000000000000000011110
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 637 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 637 t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
... ..+.-+..++.+..+......+.....+.+.+|+.... ...+.+.... ..+..++..++++..||.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNG-----QLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhccccc-----ccCccCCceEEEEEecCCE
Confidence 000 12222455566666655566665555667777766543 1112222111 1227788889999999999
Q ss_pred EEEECCCCcE
Q 004327 717 ELWNMTENKT 726 (761)
Q Consensus 717 ~IwDl~~~~~ 726 (761)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.70 E-value=3.4 Score=43.07 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=76.6
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCCCCceeEEE---eecCCCceEEEEEeC
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHE---LSCTGNKFHSCVFHP 702 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~~~~~~i~~---l~~~~~~I~sl~fsp 702 (761)
-.+||+.+++...........+.+-.+.+||++|.+|+ +| .+++|+...........+ ......+..+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45788888755432222333444556789999999988 44 688888654111011111 123345566777789
Q ss_pred CCCEEEEEEcCC-cEEEEECCC--CcEEEE--cc------CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 703 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SA------HDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 703 dg~~L~sgs~dg-~I~IwDl~~--~~~~~l--~~------h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
||+.|++|+.+. ...+|.-.. .....+ .. ....---+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998886 556666432 222211 11 111222455679999999988876654
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.40 E-value=25 Score=38.38 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=61.2
Q ss_pred eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEc---------------CCCCCEEEEEEcCCCCEEEEEe
Q 004327 609 ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 609 i~~l~fspd~~~Llags~d------g~I~IwDl~t~~~i~~l~---------------~h~~~I~sl~~spdg~~Lasgs 667 (761)
...+++.+++.++++.-.+ ..|+.+|.. ++....+. ..+..+.+|+++|+|..|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3468886666666655556 688889877 54433331 1345688999999999665543
Q ss_pred ------CC--e-------EEEEECCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEE
Q 004327 668 ------DE--L-------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 668 ------Dg--~-------I~IWdl~s~~----~~~~i~~l~~-----~~~~I~sl~fspdg~~L~s 709 (761)
|+ . ++++.+.... .....+.+.. ....+..+.+.+++.+|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 2 5555544322 1123333332 4677899999999985554
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.35 E-value=31 Score=39.42 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE--EEEec-----cCCcceEEEEEcCCC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 533 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~--~~~l~-----~h~~~V~~v~fspdg 533 (761)
-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34578899999998777765569999998655432 21111 135668999999874
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.27 E-value=5.1 Score=37.62 Aligned_cols=111 Identities=9% Similarity=0.080 Sum_probs=70.7
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe--------EEEEEcCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEECCC
Q 004327 612 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 612 l~fspd~~~Llags~dg~I~IwDl~t~~--------~i~~l~~h~~~I~sl~~sp-----dg~~LasgsDg~I~IWdl~s 678 (761)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555668888899999999876432 223332 456778776443 35788999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 679 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
... ... +.-...+.++.+- ....-++..+.+..|.-||....+..
T Consensus 83 N~d-~Fy---ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LFY---KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hhh---hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 532 111 2223456666553 22234666666678888887666554
No 488
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.19 E-value=0.025 Score=62.65 Aligned_cols=141 Identities=16% Similarity=0.294 Sum_probs=99.9
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEE
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~ 686 (761)
.....|.+.+..+++++.+..+..||-...... ... .++....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----q 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----Q 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----H
Confidence 445678888888999999999999996543322 222 345566789999887766554 78999999976421 1
Q ss_pred EeecCC-CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc-CCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 687 ELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 687 ~l~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
.+.... ..-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +++.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111111 111126799999999999999999999998877775555 99999999999876 5555665543
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.91 E-value=28 Score=38.03 Aligned_cols=142 Identities=14% Similarity=0.195 Sum_probs=84.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCe------EEEEecCCCC---cee-----EEeecCCC--------CeEEEEEcCCCCcE
Q 004327 522 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHST--------TVMSLDFHPSKEDL 579 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~------I~VWDl~t~~---~~i-----~~~~~h~~--------~V~sl~fsp~g~~l 579 (761)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+....+ ...+|++.++ ..+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-GSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-CCE
Confidence 56778888876666777777777 6655554310 001 11111111 3447888555 456
Q ss_pred EEEEeCC------CcEEEEECCCCeeeeEEe----------------cCCCeeEEEEecCCCEEEEEEc-----CC----
Q 004327 580 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAI-----EN---- 628 (761)
Q Consensus 580 lasgs~D------g~I~vWDl~t~~~~~~~~----------------~~~~i~~l~fspd~~~Llags~-----dg---- 628 (761)
+++.-.+ ..|+.++.. |.....+. .+.+...++++|++..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6566556 678888876 55544432 2345778999999997777654 22
Q ss_pred -------eEEEEECCC-Ce----EEEEEcC-----CCCCEEEEEEcCCCCEEEE
Q 004327 629 -------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 629 -------~I~IwDl~t-~~----~i~~l~~-----h~~~I~sl~~spdg~~Las 665 (761)
.|..||..+ +. ..+.+.. ....|..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244566654 21 2223332 3567889999999997775
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.86 E-value=26 Score=37.61 Aligned_cols=217 Identities=12% Similarity=0.075 Sum_probs=119.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecC------CCCceeEEeec-----CCCCeEEEEEcCCC-----------CcEE
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTG-----HSTTVMSLDFHPSK-----------EDLL 580 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~------t~~~~i~~~~~-----h~~~V~sl~fsp~g-----------~~ll 580 (761)
.-+.|+|+|.+.+.++....+...+||.. .....+..+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999998888888888999999987 12111222221 12456777776432 1235
Q ss_pred EEEeCCCcEEEEECCCCee-----eeEEec--CCCe-eEEEEec--CCCEEEEEEc-CCeEEEEECCCCeEEE--EEcCC
Q 004327 581 CSCDNNSEIRYWSINNGSC-----AGVFKC--QSGA-TQMRFQP--RLGRILAAAI-ENYISILDVETQVCRL--KLQGH 647 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~-----~~~~~~--~~~i-~~l~fsp--d~~~Llags~-dg~I~IwDl~t~~~i~--~l~~h 647 (761)
+.+++||+|.-|...-+.. ...+.. ...+ ..+++.. .+.+|+++.. .++|.|||-.-.+... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 5788899999998543222 122221 1222 3344443 3566666654 6899999865432211 01100
Q ss_pred -----CC-----------CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee--cCCCceEEEEEeC------
Q 004327 648 -----KN-----------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHP------ 702 (761)
Q Consensus 648 -----~~-----------~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~--~~~~~I~sl~fsp------ 702 (761)
-. .|+...-.++.+.=+.+. -|.|-+||+.. ..+..+. +.-+..+.++..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00 111111122222212222 56888998764 3444442 2223445566644
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCC------CCeeEEEEeC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAAST 743 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~------~~V~slafsp 743 (761)
.+..|+---.||+|..||..+++.+ .+.... ..++.|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3444444456899999999988876 333322 3468888875
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.66 E-value=41 Score=39.97 Aligned_cols=190 Identities=9% Similarity=0.027 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEEecCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCC
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 637 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~----~~~~~~~~~i~~l~fspd~~~Llags~--dg--~I~IwDl~t 637 (761)
.+.+++.++++..+.+.......+++..+..+.. ..........+.-.|.+++ .+.++.. ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788999998866665554444677766543333 1122223446777788776 5555533 22 2555543 3
Q ss_pred CeEEE-EEcCCC-CCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc-eeEE---EeecCCCceEEEEEeCCCCEE
Q 004327 638 QVCRL-KLQGHK-NQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG-ECIH---ELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 638 ~~~i~-~l~~h~-~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~-~~i~---~l~~~~~~I~sl~fspdg~~L 707 (761)
++... ...... ..|..+..++||-.++... .+.|+|--+...... ..+. .+...-..+.++.|..++..+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 33321 111222 3799999999998776644 246666555432221 1121 222223358899999999866
Q ss_pred EEEEc-C--CcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeE
Q 004327 708 LVIGC-Y--ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 757 (761)
Q Consensus 708 ~sgs~-d--g~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~-~LaSgs~DG~I 757 (761)
+.+.. . ..+++.++...... .....-..+..|+-..+.. .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 64533 2 24555566544332 1223445566677766655 55553444444
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.25 E-value=12 Score=42.28 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 693 NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
..|..+++.+..+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4478888888888999999999999999974
No 493
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.93 E-value=1.7 Score=44.75 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=47.9
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEEE--------Ec-------cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--------l~-------~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+..++.++++.+.+|.+++||+.+.+.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 355678899999999999999999988661 11 3556789999998887766655 57778875
No 494
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.92 E-value=38 Score=42.38 Aligned_cols=173 Identities=19% Similarity=0.204 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCeEEEEecc-CCcceEEEEEc---C------CCCEEEEEeC---------CCeEEEEecCC----CC---
Q 004327 501 KKAVLWCTESFTVKSTLEE-HTQWITDVRFS---P------SLSRLATSSA---------DRTVRVWDTEN----PD--- 554 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~-h~~~V~~v~fs---p------dg~~Lasgs~---------DG~I~VWDl~t----~~--- 554 (761)
..|.+.+.++++.+..+.- ....|++++.. . ...||++|.. .|.++|||+-. +.
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 3466666666666544431 12334444442 1 1347887753 48899999742 22
Q ss_pred --ceeE--EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 555 --YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 555 --~~i~--~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl-~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
..++ ....-+++|..++=. + ++++ +|. .-.|.+|++ +....+..--..-++......--.++|++|..-..
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~-G~l~-~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-R-GHLL-SSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-c-cEEE-Ecc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence 1122 223356777776643 2 3444 443 457999999 44444433222333333333334466777777666
Q ss_pred EEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCC--EEEEEe-CCeEEEEECC
Q 004327 630 ISILDVETQVCRLKLQG---HKNQVHSVCWNTSGE--YLASVS-DELVRVWSIG 677 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~---h~~~I~sl~~spdg~--~Lasgs-Dg~I~IWdl~ 677 (761)
|.++-....-....+-. ..-.+.++.|--||. +++++. |+.|.+|-..
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 66655543322222211 233577888877774 445555 8888877653
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.72 E-value=6.2 Score=46.73 Aligned_cols=93 Identities=13% Similarity=0.249 Sum_probs=55.5
Q ss_pred eEEEEecCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCC
Q 004327 610 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 681 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg-----~I~IwDl~t---~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~ 681 (761)
..+.|-|.|..+++-..|| .|.+|.-+. |+.-.. .+....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999887654 355554322 221111 12334566788887777777777889999987542
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCE
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
.........-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222223344566778886644
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.96 E-value=22 Score=43.75 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=62.0
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004327 612 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 612 l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l 688 (761)
.++.|-.+ .+.++....+++||+...+.++.... ....|..+.|. +..|++|. ...|.++..+... ..+..+
T Consensus 939 ~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~--n~l~~f 1013 (1205)
T KOG1898|consen 939 GAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRED--NQLIVF 1013 (1205)
T ss_pred eEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCC--CeEEEE
Confidence 45566656 45556678999999988765544332 34567777764 55677776 4444444333322 222233
Q ss_pred e--cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 689 S--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 689 ~--~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
. .....|+++.+- |...++.+..-|.+.+..+.
T Consensus 1014 adD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1014 ADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 223445555554 44458888888888887664
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=3.9 Score=51.06 Aligned_cols=137 Identities=10% Similarity=0.135 Sum_probs=84.9
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc--------CCCC-EEEEEeCCeEEEEECCCCCC----ceeE--EEe
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWN--------TSGE-YLASVSDELVRVWSIGSGSK----GECI--HEL 688 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s--------pdg~-~LasgsDg~I~IWdl~s~~~----~~~i--~~l 688 (761)
.+.|+.+.+|+.+++.....+.+-...|..|..- |.=+ .|+.+.--.|.++-+.-... .... ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3568999999999977777777666666665432 2222 34444455566655432211 1111 223
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCcEEE--EECCCC-------c--------------EEEEc-cCCCCeeEEEEeCC
Q 004327 689 SCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN-------K--------------TLTLS-AHDKLVSSLAASTV 744 (761)
Q Consensus 689 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~~~-------~--------------~~~l~-~h~~~V~slafspd 744 (761)
...+..|.++....+|+ |+.+|.||.|+- |...++ + ...+. .+..+|..++....
T Consensus 175 ~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 33456788888777777 666667775542 222111 1 01223 56779999999988
Q ss_pred CCEEEEEECCCeEEEcC
Q 004327 745 NGMVASASHDKCVKIWK 761 (761)
Q Consensus 745 g~~LaSgs~DG~I~IWd 761 (761)
..++.+-+..|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 88999999999999996
No 498
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=88.60 E-value=0.13 Score=54.39 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 004327 30 MQVQQLLLQRHA 41 (761)
Q Consensus 30 ~~~~~~~~~~~~ 41 (761)
.|.||+++++++
T Consensus 360 hQqQQm~lqQqQ 371 (468)
T PF11498_consen 360 HQQQQMQLQQQQ 371 (468)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 499
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.57 E-value=4.7 Score=48.08 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred eEEEEEcC--CCCEEEEEECCCeEEEEEc--------------------CCCeEEEEeccCCcceEEEEEc--CCCCEEE
Q 004327 482 VESCHFSP--DGKLLATGGHDKKAVLWCT--------------------ESFTVKSTLEEHTQWITDVRFS--PSLSRLA 537 (761)
Q Consensus 482 V~~lafSp--dg~~Lasgs~Dg~I~VWdl--------------------~t~~~~~~l~~h~~~V~~v~fs--pdg~~La 537 (761)
|+.|.... +...|+.+..||.|.+|.+ ..-++...+.... .++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEE
Q ss_pred EEeCCCeEEEEecCC--CCceeEEeecCCCCeEEEEEcCCC--Cc---EEEEEeCCCcEEEEEC
Q 004327 538 TSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK--ED---LLCSCDNNSEIRYWSI 594 (761)
Q Consensus 538 sgs~DG~I~VWDl~t--~~~~i~~~~~h~~~V~sl~fsp~g--~~---llasgs~Dg~I~vWDl 594 (761)
+++....|.||-+.. .+.....-..|...|-+|+|.++. .. .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.81 E-value=14 Score=41.78 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecC------CCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~------t~~~~i~~~-~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD 593 (761)
.....+..|...+..+++. |..+.||+.. ........+ .++...+.++ ++.....|.|++|+
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v---------~lv~p~~G~v~f~~ 94 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV---------GLVKPKTGRVVFWE 94 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE---------EEEE-TT-EEEEES
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE---------EEEEcCCCCEEecc
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 004327 594 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 673 (761)
Q Consensus 594 l~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~I 673 (761)
--.............+..+++.. +......+.-....+.+ ++++.++|.|..
T Consensus 95 ~I~~~l~~~t~~~i~l~gv~~~~---------------------------l~~~e~~~~~~~~~~~~-~I~~ts~GRif~ 146 (422)
T PF08801_consen 95 SISHLLVLATPSQISLLGVSYSE---------------------------LLSGELSTSLTNVEPSG-FIVSTSTGRIFF 146 (422)
T ss_dssp -TT-TT--EEEE---------------------------------------------EEEEEEETTT-EEEEETT--EEE
T ss_pred cchhhhhcCccccccccccceee---------------------------ecCCceEEECCCCceEE-EEEECCCCeEEE
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 674 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 674 Wdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
...+.. ..+.++......-.+-.+......++..-.-+ ....+..|..+++.+..++|++.+.
T Consensus 147 ~~~~~~---~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~--------------~~~~~~~I~~v~~d~~r~~ly~l~~ 209 (422)
T PF08801_consen 147 LGIRDS---NGKYELSYQQLSGRCSKINHTSSSIFSSLLPS--------------FSDPRPKIVQVAVDPSRRLLYTLTS 209 (422)
T ss_dssp EEE-TT---S-EEEEE-TT-------------------------------------------EEEEEEETTTTEEEEEES
T ss_pred EeCCCC---CCcEEEEEEcCcCCccccccccCceeccccCC--------------cccchhceeeEEecCCcCEEEEEeC
Q ss_pred CCeEEEcC
Q 004327 754 DKCVKIWK 761 (761)
Q Consensus 754 DG~I~IWd 761 (761)
+|.|.+||
T Consensus 210 ~~~Iq~w~ 217 (422)
T PF08801_consen 210 DGSIQVWD 217 (422)
T ss_dssp SE-EEEEE
T ss_pred CCcEEEEE
Done!