Query 004327
Match_columns 761
No_of_seqs 1082 out of 2796
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.5E-42 5.1E-47 376.3 46.7 289 468-761 44-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.7E-43 1.3E-47 391.6 42.4 284 473-761 102-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 9.9E-42 3.4E-46 367.8 43.6 286 471-761 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 5.1E-41 1.7E-45 367.0 45.8 289 469-761 54-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 4.2E-42 1.5E-46 378.8 33.2 291 468-761 55-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 4.3E-40 1.5E-44 351.3 42.3 284 470-758 4-297 (304)
7 3frx_A Guanine nucleotide-bind 100.0 1.3E-39 4.5E-44 350.2 44.7 288 467-761 5-314 (319)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.2E-40 2.8E-44 355.7 42.8 293 468-761 4-332 (345)
9 1erj_A Transcriptional repress 100.0 8.4E-40 2.9E-44 362.1 43.4 282 477-761 62-386 (393)
10 4ery_A WD repeat-containing pr 100.0 6.1E-39 2.1E-43 341.8 45.7 288 469-761 13-309 (312)
11 1nr0_A Actin interacting prote 100.0 2.4E-39 8.1E-44 379.6 45.4 286 472-761 140-564 (611)
12 1nr0_A Actin interacting prote 100.0 1.7E-39 5.8E-44 380.8 43.5 306 432-761 162-608 (611)
13 2xzm_R RACK1; ribosome, transl 100.0 5.1E-39 1.7E-43 348.6 43.2 287 468-761 10-337 (343)
14 2hes_X YDR267CP; beta-propelle 100.0 1.8E-38 6E-43 343.0 41.3 289 469-761 4-325 (330)
15 2ymu_A WD-40 repeat protein; u 100.0 6E-38 2E-42 361.8 48.3 281 471-761 295-577 (577)
16 4gqb_B Methylosome protein 50; 100.0 5.2E-39 1.8E-43 350.6 36.8 279 477-761 28-328 (344)
17 3zwl_B Eukaryotic translation 100.0 6.1E-38 2.1E-42 337.8 44.0 285 470-761 23-343 (369)
18 4g56_B MGC81050 protein; prote 100.0 4E-39 1.4E-43 352.6 34.8 282 475-761 38-340 (357)
19 4aow_A Guanine nucleotide-bind 100.0 3.4E-37 1.2E-41 329.5 46.1 288 467-761 26-334 (340)
20 1gxr_A ESG1, transducin-like e 100.0 4E-37 1.4E-41 327.6 45.8 280 475-761 47-334 (337)
21 1sq9_A Antiviral protein SKI8; 100.0 8.8E-38 3E-42 342.4 38.9 287 469-761 6-392 (397)
22 2ymu_A WD-40 repeat protein; u 100.0 9.5E-37 3.3E-41 351.8 48.3 301 431-761 234-536 (577)
23 2pm9_A Protein WEB1, protein t 100.0 5E-39 1.7E-43 354.1 27.9 303 455-761 44-411 (416)
24 1r5m_A SIR4-interacting protei 100.0 3.2E-37 1.1E-41 338.8 41.0 276 478-761 107-422 (425)
25 3ow8_A WD repeat-containing pr 100.0 8.4E-37 2.9E-41 329.2 42.5 271 430-722 48-320 (321)
26 1vyh_C Platelet-activating fac 100.0 2.8E-37 9.5E-42 344.2 38.9 268 431-722 121-410 (410)
27 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-37 1.6E-41 332.8 36.1 282 475-761 4-358 (372)
28 3dm0_A Maltose-binding peripla 100.0 2.5E-36 8.5E-41 358.8 44.0 286 469-761 372-690 (694)
29 4gqb_B Methylosome protein 50; 100.0 7.7E-37 2.6E-41 333.4 36.0 244 477-726 80-334 (344)
30 2ynn_A Coatomer subunit beta'; 100.0 4.6E-36 1.6E-40 320.1 40.8 271 431-723 26-302 (304)
31 3odt_A Protein DOA1; ubiquitin 100.0 8.7E-36 3E-40 314.3 42.3 280 468-761 7-293 (313)
32 3k26_A Polycomb protein EED; W 100.0 4.1E-37 1.4E-41 331.4 31.3 286 473-761 12-363 (366)
33 3ei3_B DNA damage-binding prot 100.0 3.9E-36 1.4E-40 329.1 37.4 285 469-761 63-379 (383)
34 3i2n_A WD repeat-containing pr 100.0 4.5E-36 1.5E-40 322.6 36.8 287 473-761 12-350 (357)
35 1r5m_A SIR4-interacting protei 100.0 5.3E-36 1.8E-40 329.0 37.8 279 475-761 41-358 (425)
36 3vl1_A 26S proteasome regulato 100.0 3.6E-36 1.2E-40 332.5 36.4 311 426-761 64-416 (420)
37 3gre_A Serine/threonine-protei 100.0 1.8E-36 6.2E-41 337.8 33.2 285 470-761 53-437 (437)
38 1got_B GT-beta; complex (GTP-b 100.0 4.3E-35 1.5E-39 317.6 41.1 265 431-720 68-340 (340)
39 3frx_A Guanine nucleotide-bind 100.0 7.4E-35 2.5E-39 313.1 41.8 274 431-724 31-318 (319)
40 3dwl_C Actin-related protein 2 100.0 4.8E-37 1.7E-41 334.9 22.6 284 475-761 7-376 (377)
41 2pm9_A Protein WEB1, protein t 100.0 1.9E-36 6.5E-41 333.4 26.9 278 481-761 14-334 (416)
42 4g56_B MGC81050 protein; prote 100.0 7.7E-36 2.6E-40 326.5 31.3 289 405-724 44-344 (357)
43 2pbi_B Guanine nucleotide-bind 100.0 2.4E-34 8.1E-39 314.2 40.7 267 431-720 77-354 (354)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.6E-34 1.2E-38 311.2 41.9 280 431-727 29-339 (345)
45 1gxr_A ESG1, transducin-like e 100.0 7.9E-35 2.7E-39 309.8 35.4 278 478-761 8-293 (337)
46 3v7d_B Cell division control p 100.0 3.2E-34 1.1E-38 322.1 42.1 281 469-761 111-418 (464)
47 1yfq_A Cell cycle arrest prote 100.0 4.2E-35 1.4E-39 314.0 32.3 278 471-756 3-315 (342)
48 3mmy_A MRNA export factor; mRN 100.0 1.5E-34 5.1E-39 311.2 36.2 288 468-760 28-342 (368)
49 2oaj_A Protein SNI1; WD40 repe 100.0 4.7E-34 1.6E-38 349.4 43.8 189 431-642 30-247 (902)
50 3v7d_B Cell division control p 100.0 2E-33 6.9E-38 315.6 45.2 299 431-760 133-459 (464)
51 3f3f_A Nucleoporin SEH1; struc 100.0 8.9E-35 3.1E-39 308.8 32.2 285 474-761 6-334 (351)
52 4h5i_A Guanine nucleotide-exch 100.0 4.7E-35 1.6E-39 321.5 31.0 279 480-761 15-340 (365)
53 2xzm_R RACK1; ribosome, transl 100.0 5.5E-34 1.9E-38 309.0 39.0 279 429-724 38-341 (343)
54 2pm7_B Protein transport prote 100.0 2.8E-34 9.7E-39 305.2 35.9 252 472-723 2-285 (297)
55 1pgu_A Actin interacting prote 100.0 7.1E-34 2.4E-38 328.8 42.0 296 455-761 182-611 (615)
56 4aez_A CDC20, WD repeat-contai 100.0 6.5E-34 2.2E-38 315.0 39.8 282 472-761 84-377 (401)
57 4ery_A WD repeat-containing pr 100.0 1.3E-33 4.5E-38 300.5 40.7 268 431-722 36-311 (312)
58 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-35 5.8E-40 340.8 27.8 300 454-761 181-514 (524)
59 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-34 9.1E-39 362.0 41.2 310 431-761 628-1031(1249)
60 4e54_B DNA damage-binding prot 100.0 2.2E-35 7.5E-40 330.8 27.9 280 474-761 114-427 (435)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-33 6.2E-38 315.2 43.3 295 431-761 130-439 (445)
62 1pgu_A Actin interacting prote 100.0 6.9E-34 2.4E-38 329.0 41.0 279 471-761 55-363 (615)
63 1erj_A Transcriptional repress 100.0 1.2E-33 4.2E-38 312.6 41.1 242 478-724 122-390 (393)
64 3mkq_A Coatomer beta'-subunit; 100.0 9.2E-34 3.1E-38 340.5 43.3 308 431-761 26-383 (814)
65 3dw8_B Serine/threonine-protei 100.0 1.5E-34 5.2E-39 321.8 33.8 278 477-760 26-442 (447)
66 4a11_B DNA excision repair pro 100.0 5.9E-34 2E-38 311.4 37.5 299 458-761 25-362 (408)
67 4gga_A P55CDC, cell division c 100.0 2.6E-33 9E-38 312.2 42.2 270 482-761 108-392 (420)
68 2hes_X YDR267CP; beta-propelle 100.0 1E-33 3.6E-38 305.6 37.4 273 432-723 26-328 (330)
69 3iz6_a 40S ribosomal protein R 100.0 1.1E-34 3.7E-39 319.6 30.0 272 431-725 79-377 (380)
70 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-33 3.6E-38 356.5 42.5 285 473-761 609-910 (1249)
71 3vl1_A 26S proteasome regulato 100.0 7.9E-35 2.7E-39 321.7 27.9 274 481-761 58-362 (420)
72 3mkq_A Coatomer beta'-subunit; 100.0 6.8E-34 2.3E-38 341.6 38.2 285 471-761 5-299 (814)
73 4ggc_A P55CDC, cell division c 100.0 4.4E-33 1.5E-37 294.7 39.7 270 482-761 28-312 (318)
74 4aow_A Guanine nucleotide-bind 100.0 1.7E-32 5.9E-37 293.0 44.0 277 431-725 52-339 (340)
75 1p22_A F-BOX/WD-repeat protein 100.0 2E-33 7E-38 314.3 36.4 271 472-761 126-411 (435)
76 3bg1_A Protein SEC13 homolog; 100.0 1.2E-33 4.1E-38 303.2 30.1 249 474-722 8-292 (316)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-32 8.6E-37 305.9 41.4 272 471-761 110-388 (445)
78 1sq9_A Antiviral protein SKI8; 100.0 4.5E-33 1.5E-37 304.9 33.9 276 431-725 27-397 (397)
79 2pm7_B Protein transport prote 100.0 7.4E-33 2.5E-37 294.2 33.6 247 515-761 3-282 (297)
80 3dm0_A Maltose-binding peripla 100.0 2.8E-32 9.5E-37 323.9 40.7 275 430-723 395-693 (694)
81 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-32 5.1E-37 336.1 38.9 286 474-761 146-658 (902)
82 3i2n_A WD repeat-containing pr 100.0 5.8E-33 2E-37 298.3 30.6 249 477-726 63-356 (357)
83 3jrp_A Fusion protein of prote 100.0 1.4E-32 4.7E-37 297.5 33.7 253 471-723 3-287 (379)
84 3zwl_B Eukaryotic translation 100.0 2.3E-31 7.8E-36 286.4 42.7 270 431-725 45-348 (369)
85 3k26_A Polycomb protein EED; W 100.0 1.2E-32 4.2E-37 296.4 32.5 259 460-722 48-365 (366)
86 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-32 1.2E-36 294.5 35.8 277 431-725 21-363 (372)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-32 3.4E-37 305.0 31.1 278 481-761 36-339 (402)
88 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4E-36 296.8 37.2 246 477-727 132-384 (401)
89 3bg1_A Protein SEC13 homolog; 100.0 4.2E-33 1.4E-37 299.0 23.8 246 516-761 8-290 (316)
90 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-31 9.6E-36 279.8 36.3 265 431-727 30-300 (313)
91 4gga_A P55CDC, cell division c 100.0 5.5E-31 1.9E-35 293.5 40.0 273 458-738 127-411 (420)
92 3bws_A Protein LP49; two-domai 100.0 4E-31 1.4E-35 293.5 38.2 286 469-761 113-429 (433)
93 3ei3_B DNA damage-binding prot 100.0 9.8E-32 3.3E-36 294.2 32.7 267 431-723 87-382 (383)
94 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.1E-36 290.1 31.4 250 512-761 2-284 (379)
95 4a11_B DNA excision repair pro 100.0 8.3E-31 2.8E-35 286.4 37.3 313 431-761 57-402 (408)
96 3dwl_C Actin-related protein 2 100.0 2.5E-32 8.6E-37 297.5 24.5 274 430-721 23-377 (377)
97 4e54_B DNA damage-binding prot 100.0 3E-31 1E-35 297.2 29.8 273 431-726 133-433 (435)
98 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-30 5.1E-35 284.2 34.1 274 472-761 12-333 (355)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-30 1.7E-34 288.4 37.4 272 480-760 5-387 (450)
100 3gre_A Serine/threonine-protei 100.0 1.1E-31 3.9E-36 299.0 23.8 263 486-761 34-356 (437)
101 4ggc_A P55CDC, cell division c 100.0 1.9E-29 6.5E-34 266.7 38.5 260 458-725 47-317 (318)
102 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-30 1.1E-34 288.4 32.9 280 431-742 144-433 (435)
103 2xyi_A Probable histone-bindin 100.0 4.3E-30 1.5E-34 287.5 33.0 245 515-761 122-407 (430)
104 3dw8_B Serine/threonine-protei 100.0 2.2E-30 7.4E-35 288.2 30.4 281 431-722 41-445 (447)
105 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-31 1.1E-35 286.9 23.1 265 486-760 43-329 (343)
106 2j04_B YDR362CP, TAU91; beta p 100.0 2E-31 7E-36 306.8 20.6 256 488-748 170-458 (524)
107 1l0q_A Surface layer protein; 100.0 6.7E-29 2.3E-33 271.8 39.3 262 492-761 3-272 (391)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-30 1.3E-34 284.3 28.3 251 472-727 74-346 (402)
109 2xyi_A Probable histone-bindin 100.0 8.7E-30 3E-34 285.1 30.9 253 472-724 121-411 (430)
110 1yfq_A Cell cycle arrest prote 100.0 2.7E-29 9.1E-34 268.8 33.1 262 431-720 24-321 (342)
111 4h5i_A Guanine nucleotide-exch 100.0 2.3E-29 7.7E-34 276.2 31.8 243 473-724 67-344 (365)
112 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-30 8.8E-35 294.1 24.8 262 477-761 13-294 (588)
113 1l0q_A Surface layer protein; 100.0 3.5E-28 1.2E-32 266.1 40.5 275 432-734 4-287 (391)
114 3jro_A Fusion protein of prote 100.0 5.2E-30 1.8E-34 307.8 28.0 252 472-723 2-285 (753)
115 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-30 8.6E-35 294.2 22.3 245 477-753 83-350 (588)
116 4gq1_A NUP37; propeller, trans 100.0 3.4E-29 1.2E-33 277.3 26.7 261 476-757 86-383 (393)
117 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-28 1.8E-32 256.6 34.6 278 431-727 24-341 (351)
118 3mmy_A MRNA export factor; mRN 100.0 1.1E-27 3.9E-32 257.3 36.4 285 404-727 40-353 (368)
119 3jro_A Fusion protein of prote 100.0 4.2E-29 1.4E-33 300.0 25.9 247 515-761 3-282 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-27 1.8E-31 263.6 36.7 245 475-722 98-390 (450)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-27 6.4E-32 259.5 29.9 245 505-761 3-268 (355)
122 1nir_A Nitrite reductase; hemo 100.0 4.4E-26 1.5E-30 263.7 38.7 286 472-761 172-511 (543)
123 3bws_A Protein LP49; two-domai 100.0 1.2E-25 4.2E-30 249.3 36.1 259 458-723 146-432 (433)
124 2w18_A PALB2, fancn, partner a 99.9 5E-26 1.7E-30 244.6 30.0 258 456-761 63-354 (356)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.3E-26 2.2E-30 253.3 30.5 282 455-746 92-410 (415)
126 3lrv_A PRE-mRNA-splicing facto 99.9 4.2E-26 1.4E-30 246.7 26.6 261 429-723 47-333 (343)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-25 6.1E-30 249.6 26.5 273 480-761 63-384 (415)
128 3vgz_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 225.5 38.3 268 480-754 41-334 (353)
129 3u4y_A Uncharacterized protein 99.9 8.5E-24 2.9E-28 225.8 34.4 274 485-761 3-301 (331)
130 4gq1_A NUP37; propeller, trans 99.9 2E-25 6.9E-30 246.9 21.9 233 429-677 100-388 (393)
131 1ri6_A Putative isomerase YBHE 99.9 1.2E-23 4.2E-28 224.2 33.4 266 493-761 7-305 (343)
132 2w18_A PALB2, fancn, partner a 99.9 6.7E-24 2.3E-28 228.1 29.2 225 469-721 101-355 (356)
133 1nir_A Nitrite reductase; hemo 99.9 1E-23 3.5E-28 243.8 32.5 268 486-761 144-455 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-24 2.3E-28 252.7 30.1 276 479-761 36-410 (741)
135 1pby_B Quinohemoprotein amine 99.9 6.8E-23 2.3E-27 217.9 31.3 262 492-761 2-307 (337)
136 1ri6_A Putative isomerase YBHE 99.9 2.1E-22 7.3E-27 214.5 34.7 267 477-746 35-335 (343)
137 2ojh_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 215.5 26.7 253 496-755 17-293 (297)
138 2ojh_A Uncharacterized protein 99.9 3.8E-23 1.3E-27 214.3 26.2 255 453-714 19-293 (297)
139 2ecf_A Dipeptidyl peptidase IV 99.9 7.2E-23 2.5E-27 243.8 31.6 272 481-760 110-455 (741)
140 3u4y_A Uncharacterized protein 99.9 5E-22 1.7E-26 212.0 33.3 266 475-745 36-326 (331)
141 3o4h_A Acylamino-acid-releasin 99.9 1.3E-22 4.3E-27 235.5 28.9 267 479-761 21-312 (582)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.3E-23 7.7E-28 247.3 22.3 273 481-761 18-390 (723)
143 1k32_A Tricorn protease; prote 99.9 2.5E-22 8.7E-27 249.4 30.1 291 456-761 183-499 (1045)
144 2z3z_A Dipeptidyl aminopeptida 99.9 6.3E-22 2.1E-26 234.6 31.2 273 480-761 82-432 (706)
145 3hfq_A Uncharacterized protein 99.9 9.3E-21 3.2E-25 204.2 34.8 249 477-727 37-323 (347)
146 3hfq_A Uncharacterized protein 99.9 8.3E-21 2.9E-25 204.6 34.1 267 493-760 4-313 (347)
147 1k32_A Tricorn protease; prote 99.9 1.7E-21 5.7E-26 242.0 31.2 289 457-761 81-458 (1045)
148 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-21 6.2E-26 230.9 28.6 290 457-752 38-428 (723)
149 1pby_B Quinohemoprotein amine 99.9 3.8E-21 1.3E-25 204.3 27.5 237 481-727 35-314 (337)
150 1jmx_B Amine dehydrogenase; ox 99.9 4.5E-21 1.6E-25 205.0 28.1 270 484-761 4-322 (349)
151 3pe7_A Oligogalacturonate lyas 99.9 6.4E-21 2.2E-25 208.1 29.6 287 471-760 22-378 (388)
152 3scy_A Hypothetical bacterial 99.9 9E-20 3.1E-24 197.8 37.0 269 469-742 41-360 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.9 3.9E-21 1.3E-25 227.8 25.5 262 482-754 28-376 (706)
154 3vgz_A Uncharacterized protein 99.9 7.5E-20 2.6E-24 196.1 32.9 235 521-761 40-300 (353)
155 3scy_A Hypothetical bacterial 99.9 1.4E-19 4.9E-24 196.2 33.2 267 490-760 12-333 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 2.5E-20 8.6E-25 209.4 27.2 240 479-721 36-331 (434)
157 1z68_A Fibroblast activation p 99.8 6.3E-21 2.2E-25 226.6 18.1 271 484-761 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.3E-19 2.2E-23 192.4 31.3 267 493-761 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 7.2E-20 2.5E-24 199.5 21.6 272 482-760 38-378 (396)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.1E-18 2.1E-22 184.6 32.2 245 478-724 38-342 (365)
161 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-18 1.1E-22 182.9 28.3 237 481-727 44-329 (349)
162 3o4h_A Acylamino-acid-releasin 99.8 3.5E-19 1.2E-23 206.5 22.1 229 521-761 21-273 (582)
163 1z68_A Fibroblast activation p 99.8 3.1E-19 1E-23 212.1 20.4 292 458-761 38-440 (719)
164 4a5s_A Dipeptidyl peptidase 4 99.8 2E-18 6.9E-23 206.5 24.3 265 481-753 18-382 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 3.4E-18 1.1E-22 192.1 24.1 212 501-724 23-279 (434)
166 3azo_A Aminopeptidase; POP fam 99.8 9.2E-18 3.1E-22 197.2 27.7 281 474-760 18-363 (662)
167 2oiz_A Aromatic amine dehydrog 99.8 3.1E-17 1.1E-21 179.5 28.1 263 473-746 45-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.8 5E-17 1.7E-21 177.8 28.5 263 490-761 14-331 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.8 6.5E-17 2.2E-21 193.4 28.4 285 459-753 39-435 (740)
170 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-16 9.8E-21 169.0 30.4 239 480-723 24-322 (329)
171 2dg1_A DRP35, lactonase; beta 99.8 1.9E-16 6.6E-21 169.3 28.8 268 480-754 6-300 (333)
172 2gop_A Trilobed protease; beta 99.8 2.9E-16 1E-20 168.5 29.7 251 482-760 17-327 (347)
173 1q7f_A NHL, brain tumor CG1071 99.7 2E-15 6.9E-20 157.9 33.0 237 477-724 27-281 (286)
174 1q7f_A NHL, brain tumor CG1071 99.7 2.7E-15 9.1E-20 157.0 32.6 234 519-761 27-277 (286)
175 3pe7_A Oligogalacturonate lyas 99.7 4.1E-16 1.4E-20 169.8 26.8 246 472-723 73-384 (388)
176 1qks_A Cytochrome CD1 nitrite 99.7 1.5E-14 5.2E-19 167.5 40.1 278 481-761 198-535 (567)
177 2z2n_A Virginiamycin B lyase; 99.7 7.2E-14 2.5E-18 145.7 40.1 275 475-759 10-291 (299)
178 3fvz_A Peptidyl-glycine alpha- 99.7 2.3E-15 7.8E-20 162.0 28.6 234 521-761 23-319 (329)
179 2dg1_A DRP35, lactonase; beta 99.7 2.4E-14 8.2E-19 153.0 35.7 237 471-714 36-301 (333)
180 3azo_A Aminopeptidase; POP fam 99.7 7.1E-16 2.4E-20 181.1 25.2 241 484-729 81-375 (662)
181 2xdw_A Prolyl endopeptidase; a 99.7 1.9E-15 6.5E-20 179.8 28.7 245 477-725 122-416 (710)
182 2gop_A Trilobed protease; beta 99.7 5.4E-15 1.9E-19 158.6 28.9 232 480-735 59-342 (347)
183 3dsm_A Uncharacterized protein 99.7 1.1E-14 3.8E-19 156.8 30.5 250 500-761 16-299 (328)
184 3e5z_A Putative gluconolactona 99.7 1.3E-14 4.5E-19 152.8 29.8 241 475-727 23-290 (296)
185 3e5z_A Putative gluconolactona 99.7 2.4E-14 8.2E-19 150.8 30.0 239 512-759 18-282 (296)
186 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.6E-18 159.5 37.6 265 489-761 165-474 (567)
187 3c5m_A Oligogalacturonate lyas 99.7 3.2E-15 1.1E-19 162.6 22.0 237 482-727 83-388 (396)
188 2bkl_A Prolyl endopeptidase; m 99.7 2.8E-15 9.5E-20 178.0 23.0 247 477-730 118-404 (695)
189 2qc5_A Streptogramin B lactona 99.7 6.1E-13 2.1E-17 138.7 37.6 275 475-760 15-296 (300)
190 3dsm_A Uncharacterized protein 99.7 4.2E-14 1.4E-18 152.2 29.3 254 481-742 45-320 (328)
191 1rwi_B Serine/threonine-protei 99.6 5.1E-14 1.7E-18 145.3 26.4 238 481-725 25-266 (270)
192 3sjl_D Methylamine dehydrogena 99.6 5E-14 1.7E-18 154.6 27.6 271 485-761 38-360 (386)
193 2mad_H Methylamine dehydrogena 99.6 9.4E-13 3.2E-17 144.7 36.9 266 487-761 28-347 (373)
194 2xdw_A Prolyl endopeptidase; a 99.6 1E-13 3.5E-18 164.9 31.0 268 489-761 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 7.7E-14 2.6E-18 144.0 25.2 233 523-761 25-261 (270)
196 3no2_A Uncharacterized protein 99.6 4.2E-13 1.4E-17 141.2 28.7 241 490-740 4-272 (276)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.9E-17 138.1 31.3 238 477-723 15-299 (314)
198 1yr2_A Prolyl oligopeptidase; 99.6 1.6E-13 5.4E-18 164.2 25.8 245 478-729 161-447 (741)
199 2bkl_A Prolyl endopeptidase; m 99.6 1.2E-13 4.2E-18 163.8 24.3 268 488-761 76-394 (695)
200 2mad_H Methylamine dehydrogena 99.6 2E-11 6.7E-16 134.2 38.6 244 473-729 61-356 (373)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2E-12 6.8E-17 136.3 29.3 236 520-761 16-296 (314)
202 2z2n_A Virginiamycin B lyase; 99.6 8.2E-12 2.8E-16 130.0 33.4 236 517-761 10-252 (299)
203 3c75_H MADH, methylamine dehyd 99.5 1.1E-12 3.7E-17 146.2 25.7 266 489-761 82-399 (426)
204 3sjl_D Methylamine dehydrogena 99.5 2.5E-12 8.6E-17 141.1 27.2 261 473-744 73-384 (386)
205 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-12 3.6E-17 157.0 25.7 268 488-761 115-438 (741)
206 3no2_A Uncharacterized protein 99.5 2.5E-12 8.7E-17 135.2 25.1 210 532-752 4-231 (276)
207 3iuj_A Prolyl endopeptidase; h 99.5 1.7E-12 5.8E-17 154.1 24.3 245 477-730 126-412 (693)
208 3hrp_A Uncharacterized protein 99.5 1.6E-11 5.5E-16 136.6 30.1 231 522-760 131-406 (409)
209 3g4e_A Regucalcin; six bladed 99.5 7.2E-11 2.4E-15 124.8 33.6 229 476-713 9-262 (297)
210 3g4e_A Regucalcin; six bladed 99.5 7.1E-11 2.4E-15 124.8 33.5 228 517-752 8-260 (297)
211 2qc5_A Streptogramin B lactona 99.5 1.3E-10 4.4E-15 120.9 34.3 234 519-761 17-257 (300)
212 2qe8_A Uncharacterized protein 99.4 2.6E-12 8.9E-17 139.0 19.5 260 480-756 17-313 (343)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 2.4E-10 8.2E-15 122.7 34.6 221 482-714 51-293 (326)
214 3hrp_A Uncharacterized protein 99.4 6.2E-11 2.1E-15 131.8 30.2 232 480-721 131-408 (409)
215 3dr2_A Exported gluconolactona 99.4 3.2E-11 1.1E-15 127.9 26.1 235 514-759 37-302 (305)
216 2ghs_A AGR_C_1268P; regucalcin 99.4 3.1E-10 1.1E-14 121.8 33.0 221 523-753 50-291 (326)
217 3c75_H MADH, methylamine dehyd 99.4 1.8E-11 6.2E-16 136.3 23.5 237 484-729 122-408 (426)
218 3dr2_A Exported gluconolactona 99.4 7.5E-11 2.6E-15 125.0 26.6 233 475-721 40-304 (305)
219 1xip_A Nucleoporin NUP159; bet 99.4 6.4E-12 2.2E-16 138.2 18.7 172 481-667 39-232 (388)
220 1mda_H Methylamine dehydrogena 99.4 1.1E-11 3.9E-16 135.6 17.9 254 472-743 59-366 (368)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 6.2E-10 2.1E-14 121.2 29.9 253 490-761 102-375 (376)
222 2hz6_A Endoplasmic reticulum t 99.3 3.1E-14 1E-18 156.3 -6.7 223 490-725 8-238 (369)
223 1yiq_A Quinohemoprotein alcoho 99.3 2.5E-10 8.7E-15 135.3 26.3 264 491-761 70-502 (689)
224 1kb0_A Quinohemoprotein alcoho 99.3 3.1E-10 1.1E-14 134.3 26.6 263 491-761 77-504 (677)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.9E-09 6.6E-14 117.2 30.1 254 491-761 53-334 (376)
226 1mda_H Methylamine dehydrogena 99.3 7.8E-11 2.7E-15 129.0 18.9 246 502-761 47-343 (368)
227 3hxj_A Pyrrolo-quinoline quino 99.3 1.8E-10 6.2E-15 122.0 20.2 258 481-760 61-320 (330)
228 3iuj_A Prolyl endopeptidase; h 99.3 2.8E-10 9.4E-15 135.1 23.5 236 519-761 126-402 (693)
229 1npe_A Nidogen, entactin; glyc 99.2 1.7E-08 5.7E-13 104.5 33.5 247 492-746 2-263 (267)
230 2ece_A 462AA long hypothetical 99.2 1.2E-08 4.1E-13 112.9 31.8 223 486-711 88-399 (462)
231 1kb0_A Quinohemoprotein alcoho 99.2 1.5E-09 5E-14 128.5 25.8 253 490-749 127-535 (677)
232 1xip_A Nucleoporin NUP159; bet 99.2 2.8E-10 9.6E-15 125.1 17.9 170 566-752 39-232 (388)
233 1yiq_A Quinohemoprotein alcoho 99.2 3.6E-09 1.2E-13 125.4 28.1 258 490-753 120-538 (689)
234 2qe8_A Uncharacterized protein 99.1 9.6E-10 3.3E-14 118.7 18.0 220 522-761 17-275 (343)
235 3hxj_A Pyrrolo-quinoline quino 99.1 3.7E-10 1.3E-14 119.6 14.5 256 485-761 25-281 (330)
236 1fwx_A Nitrous oxide reductase 99.1 3E-09 1E-13 121.6 21.1 257 494-753 18-407 (595)
237 1fwx_A Nitrous oxide reductase 99.1 8.3E-09 2.8E-13 117.9 24.7 234 490-727 100-435 (595)
238 1kv9_A Type II quinohemoprotei 99.1 1.3E-08 4.6E-13 120.1 27.5 264 491-761 66-485 (668)
239 2ece_A 462AA long hypothetical 99.1 4E-08 1.4E-12 108.8 28.4 222 528-752 88-399 (462)
240 1npe_A Nidogen, entactin; glyc 99.1 2E-07 6.9E-12 96.3 31.0 222 534-761 2-235 (267)
241 2hz6_A Endoplasmic reticulum t 99.0 1.6E-10 5.5E-15 126.5 6.2 201 532-746 8-216 (369)
242 2ad6_A Methanol dehydrogenase 99.0 7.3E-08 2.5E-12 111.7 27.8 263 491-761 62-491 (571)
243 2iwa_A Glutamine cyclotransfer 99.0 1.4E-07 4.7E-12 98.2 26.4 204 512-724 10-238 (266)
244 4a2l_A BT_4663, two-component 99.0 1.3E-06 4.5E-11 104.9 38.7 265 479-760 262-567 (795)
245 4a2l_A BT_4663, two-component 99.0 1.2E-06 4.1E-11 105.2 36.9 267 478-760 213-522 (795)
246 1w6s_A Methanol dehydrogenase 98.9 2.6E-07 9E-12 107.3 29.2 265 491-761 62-500 (599)
247 2fp8_A Strictosidine synthase; 98.9 4.9E-07 1.7E-11 96.2 29.0 233 481-724 20-314 (322)
248 2p4o_A Hypothetical protein; p 98.9 1E-06 3.4E-11 93.3 30.8 233 511-754 22-278 (306)
249 2fp8_A Strictosidine synthase; 98.9 5.6E-07 1.9E-11 95.7 28.5 232 522-761 19-310 (322)
250 3v9f_A Two-component system se 98.9 2.3E-06 7.7E-11 102.7 36.0 274 479-761 257-565 (781)
251 2iwa_A Glutamine cyclotransfer 98.9 5.9E-07 2E-11 93.4 26.2 202 468-678 8-237 (266)
252 2p4o_A Hypothetical protein; p 98.9 4.1E-06 1.4E-10 88.5 32.9 237 469-714 22-279 (306)
253 1kv9_A Type II quinohemoprotei 98.8 3.8E-07 1.3E-11 107.7 26.4 257 491-752 117-520 (668)
254 3nol_A Glutamine cyclotransfer 98.8 5.4E-07 1.8E-11 93.0 23.5 192 512-713 32-245 (262)
255 2ad6_A Methanol dehydrogenase 98.8 1E-06 3.6E-11 101.9 28.0 253 491-749 115-522 (571)
256 1k3i_A Galactose oxidase precu 98.8 9.4E-08 3.2E-12 112.5 19.3 264 484-753 190-530 (656)
257 3nol_A Glutamine cyclotransfer 98.8 7.5E-07 2.6E-11 91.9 23.6 198 468-675 30-251 (262)
258 1flg_A Protein (quinoprotein e 98.8 2.4E-06 8.3E-11 99.1 30.7 264 492-761 69-513 (582)
259 1ijq_A LDL receptor, low-densi 98.8 2.5E-05 8.4E-10 83.2 36.1 229 493-726 3-241 (316)
260 3v9f_A Two-component system se 98.8 9E-06 3.1E-10 97.4 35.2 268 480-760 211-520 (781)
261 3nok_A Glutaminyl cyclase; bet 98.8 1.3E-06 4.6E-11 90.1 24.0 191 512-713 44-255 (268)
262 3v64_C Agrin; beta propeller, 98.7 1.2E-05 4.1E-10 87.0 32.5 237 480-725 34-277 (349)
263 3mbr_X Glutamine cyclotransfer 98.7 4.1E-06 1.4E-10 85.6 25.6 192 512-713 10-224 (243)
264 2xbg_A YCF48-like protein; pho 98.7 3.8E-05 1.3E-09 82.2 34.3 265 479-761 35-319 (327)
265 3mbr_X Glutamine cyclotransfer 98.7 5E-06 1.7E-10 85.0 25.8 186 557-753 12-223 (243)
266 3v65_B Low-density lipoprotein 98.7 1.5E-05 5.1E-10 87.5 31.0 238 481-727 78-322 (386)
267 3nok_A Glutaminyl cyclase; bet 98.7 1.4E-06 4.9E-11 89.9 20.6 176 566-752 56-253 (268)
268 1w6s_A Methanol dehydrogenase 98.6 4.1E-06 1.4E-10 97.3 26.0 253 494-752 124-535 (599)
269 3tc9_A Hypothetical hydrolase; 98.6 5.3E-06 1.8E-10 92.6 25.8 233 523-760 138-426 (430)
270 1flg_A Protein (quinoprotein e 98.6 1E-05 3.4E-10 93.9 28.9 256 491-752 117-548 (582)
271 1ijq_A LDL receptor, low-densi 98.6 7.6E-05 2.6E-09 79.3 33.6 219 535-760 3-234 (316)
272 3v64_C Agrin; beta propeller, 98.6 4.6E-05 1.6E-09 82.4 32.0 228 524-759 36-270 (349)
273 3sov_A LRP-6, low-density lipo 98.6 2.6E-05 9.1E-10 83.2 29.3 221 500-726 12-241 (318)
274 3p5b_L Low density lipoprotein 98.6 0.00015 5.2E-09 79.8 35.6 230 493-727 85-324 (400)
275 3v65_B Low-density lipoprotein 98.6 3.7E-05 1.3E-09 84.3 30.4 228 525-760 80-314 (386)
276 2xe4_A Oligopeptidase B; hydro 98.6 5.2E-06 1.8E-10 99.2 25.1 242 477-727 170-462 (751)
277 3qqz_A Putative uncharacterize 98.5 3.9E-05 1.3E-09 79.2 26.1 199 559-760 21-249 (255)
278 3tc9_A Hypothetical hydrolase; 98.5 4.7E-05 1.6E-09 84.8 28.9 234 481-722 138-429 (430)
279 4hw6_A Hypothetical protein, I 98.5 3.7E-05 1.3E-09 85.8 27.0 233 522-760 139-429 (433)
280 3sov_A LRP-6, low-density lipo 98.5 0.00013 4.5E-09 77.8 30.2 221 535-760 6-234 (318)
281 3qqz_A Putative uncharacterize 98.5 0.00046 1.6E-08 71.1 32.8 202 473-676 20-251 (255)
282 3p5b_L Low density lipoprotein 98.5 0.00022 7.4E-09 78.6 32.5 219 535-760 85-316 (400)
283 3amr_A 3-phytase; beta-propell 98.4 5.6E-05 1.9E-09 81.1 26.4 185 490-677 39-262 (355)
284 2xe4_A Oligopeptidase B; hydro 98.4 1.9E-05 6.4E-10 94.4 25.4 192 523-721 175-398 (751)
285 3m0c_C LDL receptor, low-densi 98.4 0.00027 9.1E-09 84.6 34.2 239 483-727 388-636 (791)
286 4hw6_A Hypothetical protein, I 98.3 0.00014 4.9E-09 81.0 27.7 234 481-722 140-432 (433)
287 3kya_A Putative phosphatase; s 98.3 0.00018 6.3E-09 81.0 27.3 233 523-760 140-471 (496)
288 1k3i_A Galactose oxidase precu 98.2 3.7E-05 1.3E-09 90.3 20.9 228 526-754 190-476 (656)
289 3m0c_C LDL receptor, low-densi 98.2 0.001 3.5E-08 79.6 33.3 216 535-758 397-626 (791)
290 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0011 3.9E-08 77.3 32.1 219 535-760 8-233 (628)
291 3kya_A Putative phosphatase; s 98.2 0.00078 2.7E-08 75.9 29.5 241 481-727 140-479 (496)
292 2xzh_A Clathrin heavy chain 1; 98.1 0.006 2.1E-07 64.4 32.5 248 500-757 48-325 (365)
293 3s94_A LRP-6, low-density lipo 98.1 0.00076 2.6E-08 78.6 28.5 222 500-726 17-246 (619)
294 1bpo_A Protein (clathrin); cla 98.1 0.017 5.8E-07 63.3 36.1 248 500-757 47-324 (494)
295 2ism_A Putative oxidoreductase 98.1 0.00063 2.1E-08 73.5 25.2 224 481-710 32-332 (352)
296 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0042 1.4E-07 72.4 33.9 224 493-725 8-239 (628)
297 3s94_A LRP-6, low-density lipo 98.1 0.0041 1.4E-07 72.4 33.5 276 480-759 84-418 (619)
298 2xbg_A YCF48-like protein; pho 98.1 0.0011 3.6E-08 70.8 25.9 232 479-721 79-320 (327)
299 3ott_A Two-component system se 98.0 0.0071 2.4E-07 71.8 35.5 264 479-758 62-347 (758)
300 3a9g_A Putative uncharacterize 98.0 0.0029 9.9E-08 68.4 29.1 229 480-711 29-329 (354)
301 1n7d_A LDL receptor, low-densi 98.0 9.8E-06 3.4E-10 96.0 9.7 225 500-728 385-619 (699)
302 2p9w_A MAL S 1 allergenic prot 98.0 0.0015 5.2E-08 69.5 25.2 196 482-678 15-265 (334)
303 3ei3_A DNA damage-binding prot 98.0 0.024 8.2E-07 70.6 39.9 272 480-760 652-995 (1158)
304 2ism_A Putative oxidoreductase 98.0 0.0023 7.7E-08 69.1 26.3 223 522-752 31-333 (352)
305 3sre_A PON1, serum paraoxonase 97.9 0.0017 5.8E-08 70.2 24.9 177 541-721 81-296 (355)
306 3ei3_A DNA damage-binding prot 97.9 0.01 3.4E-07 74.0 34.4 271 479-761 553-910 (1158)
307 3ott_A Two-component system se 97.9 0.031 1.1E-06 66.3 37.6 266 480-760 146-444 (758)
308 3a9g_A Putative uncharacterize 97.9 0.0036 1.2E-07 67.6 26.8 226 521-752 28-330 (354)
309 3amr_A 3-phytase; beta-propell 97.9 0.0021 7.1E-08 69.0 24.3 180 578-761 41-260 (355)
310 2xzh_A Clathrin heavy chain 1; 97.9 0.037 1.3E-06 58.5 34.3 234 484-727 71-336 (365)
311 2p9w_A MAL S 1 allergenic prot 97.9 0.0047 1.6E-07 65.7 25.9 209 517-727 8-269 (334)
312 2g8s_A Glucose/sorbosone dehyd 97.8 0.0027 9.4E-08 68.5 24.4 234 522-758 18-348 (353)
313 1n7d_A LDL receptor, low-densi 97.8 6.8E-05 2.3E-09 88.8 11.3 213 542-760 385-610 (699)
314 2g8s_A Glucose/sorbosone dehyd 97.8 0.0051 1.8E-07 66.3 25.0 227 481-711 19-340 (353)
315 1bpo_A Protein (clathrin); cla 97.8 0.065 2.2E-06 58.7 33.1 234 484-727 70-335 (494)
316 3das_A Putative oxidoreductase 97.8 0.018 6.3E-07 61.8 29.0 233 516-752 26-326 (347)
317 2vpj_A Kelch-like protein 12; 97.7 0.003 1E-07 65.7 21.4 227 490-727 14-282 (301)
318 3sre_A PON1, serum paraoxonase 97.6 0.034 1.2E-06 59.9 28.7 193 481-677 51-297 (355)
319 3ii7_A Kelch-like protein 7; p 97.6 0.0089 3.1E-07 62.3 23.4 226 492-727 13-276 (306)
320 3das_A Putative oxidoreductase 97.6 0.039 1.3E-06 59.3 28.3 236 473-710 25-325 (347)
321 2xn4_A Kelch-like protein 2; s 97.5 0.0058 2E-07 63.6 20.6 227 491-729 16-282 (302)
322 2vpj_A Kelch-like protein 12; 97.4 0.0049 1.7E-07 64.1 17.8 212 532-754 14-263 (301)
323 3s25_A Hypothetical 7-bladed b 97.4 0.046 1.6E-06 57.5 25.3 234 488-752 22-280 (302)
324 3sbq_A Nitrous-oxide reductase 97.4 0.018 6E-07 64.9 22.6 258 494-752 73-453 (638)
325 4asc_A Kelch repeat and BTB do 97.4 0.02 6.8E-07 60.0 22.5 226 493-729 7-283 (315)
326 1cru_A Protein (soluble quinop 97.3 0.1 3.4E-06 58.2 28.2 106 521-626 26-163 (454)
327 3ii7_A Kelch-like protein 7; p 97.3 0.014 4.9E-07 60.7 19.9 211 534-754 13-257 (306)
328 1zgk_A Kelch-like ECH-associat 97.3 0.0096 3.3E-07 62.3 18.5 227 489-728 23-292 (308)
329 2xn4_A Kelch-like protein 2; s 97.2 0.014 4.9E-07 60.6 19.3 211 534-755 17-262 (302)
330 3s25_A Hypothetical 7-bladed b 97.2 0.074 2.5E-06 55.9 24.4 177 484-679 57-256 (302)
331 2uvk_A YJHT; unknown function, 97.1 0.01 3.6E-07 63.3 16.8 231 490-728 19-347 (357)
332 2woz_A Kelch repeat and BTB do 97.0 0.067 2.3E-06 56.0 22.3 219 502-729 25-293 (318)
333 2be1_A Serine/threonine-protei 97.0 0.015 5E-07 62.3 16.4 192 534-728 11-236 (339)
334 4asc_A Kelch repeat and BTB do 97.0 0.07 2.4E-06 55.7 21.6 210 535-754 7-253 (315)
335 1cru_A Protein (soluble quinop 96.9 0.41 1.4E-05 53.2 28.6 105 480-584 27-163 (454)
336 2be1_A Serine/threonine-protei 96.8 0.0065 2.2E-07 65.1 12.3 187 492-680 11-233 (339)
337 3pbp_A Nucleoporin NUP82; beta 96.8 0.055 1.9E-06 59.2 19.4 132 627-758 40-206 (452)
338 1xi4_A Clathrin heavy chain; a 96.8 0.052 1.8E-06 67.4 21.1 218 500-727 47-293 (1630)
339 1tl2_A L10, protein (tachylect 96.8 0.035 1.2E-06 55.5 15.9 173 577-758 4-204 (236)
340 2woz_A Kelch repeat and BTB do 96.7 0.1 3.5E-06 54.6 20.4 203 544-754 25-263 (318)
341 1zgk_A Kelch-like ECH-associat 96.5 0.043 1.5E-06 57.3 15.9 213 532-755 24-273 (308)
342 3b7f_A Glycosyl hydrolase, BNR 96.5 1 3.6E-05 48.4 27.5 254 480-742 55-391 (394)
343 3pbp_A Nucleoporin NUP82; beta 96.5 0.16 5.6E-06 55.5 20.0 143 573-719 29-208 (452)
344 2wg3_C Hedgehog-interacting pr 96.4 1.6 5.5E-05 48.6 28.6 230 482-711 16-354 (463)
345 1xi4_A Clathrin heavy chain; a 96.4 0.09 3.1E-06 65.4 19.3 235 485-727 71-335 (1630)
346 1tl2_A L10, protein (tachylect 96.3 0.14 4.7E-06 51.2 16.9 177 532-717 3-204 (236)
347 3b7f_A Glycosyl hydrolase, BNR 96.3 1.5 5.3E-05 47.0 28.3 257 492-759 23-367 (394)
348 2uvk_A YJHT; unknown function, 96.2 0.054 1.9E-06 57.6 14.8 220 532-755 19-327 (357)
349 2zwa_A Leucine carboxyl methyl 96.2 0.12 4.2E-06 60.8 18.6 197 531-727 396-639 (695)
350 3sbq_A Nitrous-oxide reductase 96.1 0.58 2E-05 52.8 22.2 234 490-726 141-481 (638)
351 2wg3_C Hedgehog-interacting pr 95.7 3.4 0.00011 45.9 28.5 229 522-752 14-354 (463)
352 3uc1_A DNA gyrase subunit A; D 95.5 2 6.8E-05 45.5 22.9 262 492-755 4-321 (327)
353 4hvt_A Ritya.17583.B, post-pro 95.4 1.3 4.5E-05 52.0 23.0 236 486-727 136-433 (711)
354 4b8c_D Glucose-repressible alc 95.2 0.0027 9.3E-08 75.4 -0.9 13 731-743 707-719 (727)
355 3qhy_B Beta-lactamase inhibito 95.0 0.64 2.2E-05 48.1 16.9 217 522-760 24-242 (282)
356 4b8c_D Glucose-repressible alc 95.0 0.0065 2.2E-07 72.1 1.7 9 500-508 487-495 (727)
357 2zwa_A Leucine carboxyl methyl 94.8 0.79 2.7E-05 53.8 19.0 151 490-641 451-639 (695)
358 3qhy_B Beta-lactamase inhibito 94.8 0.54 1.9E-05 48.6 15.8 243 481-748 25-268 (282)
359 3q6k_A 43.2 kDa salivary prote 94.5 6.5 0.00022 42.4 26.2 165 588-752 124-342 (381)
360 1wp5_A Topoisomerase IV; broke 94.4 6.1 0.00021 41.6 23.2 232 489-723 3-277 (323)
361 3l6v_A GYRA, DNA gyrase subuni 94.1 7.5 0.00026 41.8 25.4 232 487-721 3-314 (370)
362 1suu_A DNA gyrase subunit A; t 93.7 7.7 0.00026 40.5 27.8 231 488-721 5-281 (312)
363 3kci_A Probable E3 ubiquitin-p 93.4 10 0.00034 40.7 28.9 230 524-760 55-341 (389)
364 3l6v_A GYRA, DNA gyrase subuni 93.2 11 0.00037 40.5 22.4 226 529-757 3-309 (370)
365 1zi0_A DNA gyrase subunit A; b 92.6 11 0.00038 39.2 26.3 232 489-723 1-277 (307)
366 3mvd_K Regulator of chromosome 92.6 13 0.00046 40.1 35.8 226 523-760 76-370 (423)
367 1sqj_A OXG-RCBH, oligoxylogluc 92.2 23 0.00078 41.9 26.1 147 479-627 14-190 (789)
368 3no0_A DNA gyrase subunit A; D 92.2 11 0.00039 38.5 22.1 197 522-723 24-246 (276)
369 1zi0_A DNA gyrase subunit A; b 91.9 13 0.00046 38.5 23.7 225 531-758 1-271 (307)
370 4hvt_A Ritya.17583.B, post-pro 91.7 9.5 0.00032 44.7 21.2 223 525-752 132-415 (711)
371 3uc1_A DNA gyrase subunit A; D 91.6 15 0.00052 38.6 22.3 193 482-677 44-278 (327)
372 1sqj_A OXG-RCBH, oligoxylogluc 90.7 32 0.0011 40.7 25.9 144 521-667 14-188 (789)
373 1suu_A DNA gyrase subunit A; t 89.0 24 0.00081 36.7 26.6 191 530-723 5-231 (312)
374 3no0_A DNA gyrase subunit A; D 88.2 25 0.00084 35.9 21.8 194 480-677 24-245 (276)
375 3kci_A Probable E3 ubiquitin-p 88.2 30 0.001 36.9 27.6 234 482-723 55-345 (389)
376 1wp5_A Topoisomerase IV; broke 87.2 31 0.0011 36.0 24.2 190 531-723 3-225 (323)
377 2cn3_A Xyloglucanase, beta-1,4 81.5 87 0.003 36.5 24.6 103 523-627 24-153 (737)
378 4gq2_M Nucleoporin NUP120; bet 80.7 1.1E+02 0.0037 37.0 23.6 37 609-645 238-274 (950)
379 2cn3_A Xyloglucanase, beta-1,4 78.3 1.1E+02 0.0037 35.7 27.2 103 481-584 24-151 (737)
380 3q6k_A 43.2 kDa salivary prote 77.6 80 0.0027 33.8 23.5 165 502-667 124-342 (381)
381 4d9s_A UVB-resistance protein 77.1 82 0.0028 33.6 28.9 228 522-760 16-301 (406)
382 4d9s_A UVB-resistance protein 76.5 85 0.0029 33.5 34.9 267 480-760 16-353 (406)
383 1a12_A RCC1, regulator of chro 74.6 94 0.0032 33.1 33.0 226 522-760 59-361 (413)
384 2zux_A YESW protein; beta-prop 73.5 1.3E+02 0.0043 34.1 26.1 228 478-725 177-481 (591)
385 4gq2_M Nucleoporin NUP120; bet 72.4 1.1E+02 0.0037 36.9 19.1 35 693-727 236-270 (950)
386 3of7_A Regulator of chromosome 68.1 1.4E+02 0.0048 32.5 28.0 147 565-721 148-339 (473)
387 3zwu_A Alkaline phosphatase PH 59.7 1E+02 0.0036 35.0 14.4 59 609-667 478-549 (592)
388 3f7f_A Nucleoporin NUP120; nuc 55.8 1.1E+02 0.0037 35.7 13.7 36 481-518 223-258 (729)
389 3mvd_K Regulator of chromosome 53.1 2.3E+02 0.0079 30.0 30.8 229 482-723 77-374 (423)
390 3mez_B Mannose-specific lectin 52.3 91 0.0031 26.8 9.8 59 619-678 25-84 (113)
391 1zvt_A Topoisomerase IV subuni 51.0 2E+02 0.0068 28.7 14.1 142 493-637 4-163 (256)
392 4fhn_B Nucleoporin NUP120; pro 49.0 3.6E+02 0.012 33.0 18.1 37 609-645 240-276 (1139)
393 4h3o_A Lectin; cadmium, plant 48.0 99 0.0034 26.3 9.2 25 653-678 54-78 (105)
394 3a0f_A Xyloglucanase; beta-pro 47.5 3.9E+02 0.013 31.0 25.6 147 520-669 19-203 (763)
395 3of7_A Regulator of chromosome 47.4 3E+02 0.01 29.7 28.1 191 522-722 148-404 (473)
396 2zux_A YESW protein; beta-prop 43.9 3.9E+02 0.014 30.0 20.4 153 563-727 177-404 (591)
397 1zvt_A Topoisomerase IV subuni 41.3 2.8E+02 0.0095 27.5 16.3 142 534-678 3-163 (256)
398 3a0f_A Xyloglucanase; beta-pro 40.1 4.9E+02 0.017 30.1 31.0 149 478-628 19-203 (763)
399 4a9v_A PHOX; hydrolase, beta-p 39.4 90 0.0031 35.4 9.4 60 608-667 477-549 (592)
400 3zwu_A Alkaline phosphatase PH 37.9 77 0.0026 36.0 8.7 58 482-539 478-548 (592)
401 2zuy_A YESX protein; beta-prop 37.3 5E+02 0.017 29.4 28.2 239 478-727 181-504 (620)
402 4fhn_B Nucleoporin NUP120; pro 36.8 80 0.0027 38.9 9.4 34 694-727 239-272 (1139)
403 4a9v_A PHOX; hydrolase, beta-p 36.2 1.2E+02 0.004 34.4 9.7 59 481-539 477-548 (592)
404 3dzw_A Agglutinin; lectin, man 33.5 2.2E+02 0.0075 24.1 9.6 25 653-678 53-77 (109)
405 1a12_A RCC1, regulator of chro 29.4 5.2E+02 0.018 27.1 29.1 227 480-722 59-364 (413)
406 3mez_A Mannose-specific lectin 28.1 78 0.0027 27.2 5.3 24 653-676 53-76 (111)
407 3hx6_A Type 4 fimbrial biogene 27.8 6.9E+02 0.023 28.0 17.7 146 576-725 84-286 (570)
408 3f7f_A Nucleoporin NUP120; nuc 27.8 7.6E+02 0.026 28.6 16.3 36 567-605 224-259 (729)
409 1m3w_A H10H24; four-helix bund 25.0 29 0.00099 22.1 1.2 10 73-82 21-30 (32)
410 3a0c_A Mannose/sialic acid-bin 23.3 3.4E+02 0.012 22.9 10.6 91 616-725 18-109 (110)
411 3hx6_A Type 4 fimbrial biogene 22.6 8.5E+02 0.029 27.3 18.8 147 491-638 85-285 (570)
412 1b2p_A Protein (lectin); manno 20.5 4.1E+02 0.014 22.8 11.2 24 653-677 64-87 (119)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-42 Score=376.28 Aligned_cols=289 Identities=19% Similarity=0.363 Sum_probs=263.9
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+.....+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEE
Q 004327 548 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 548 WDl~t~~---~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Lla 623 (761)
||+.+.. .....+.+|.+.|.++.|++++ .+++++.|+.|++||+++++++..+. +...+.+++|+|++.++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998754 2356788999999999999875 36688999999999999999988887 4567999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CCCceEEEEE
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF 700 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~--~~~~I~sl~f 700 (761)
++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999 999999999876 44544432 2347999999
Q ss_pred eCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 701 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 701 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999888877 7789999999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-43 Score=391.63 Aligned_cols=284 Identities=26% Similarity=0.488 Sum_probs=266.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++...++.+|...|++++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
.. .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.++..+.. ...+.++.|++++..|++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 65 478889999999999999996 4666999999999999999999888874 45689999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 690 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spd--------------------g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~ 690 (761)
+||++++++...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899999 999999999887 78888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 691 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 691 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|...|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||+|+|||
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988876 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.9e-42 Score=367.77 Aligned_cols=286 Identities=18% Similarity=0.324 Sum_probs=261.2
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEEcCCCeE--EEEeccCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 471 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~t~~~--~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
.++.+.+|.+.|++++|+++ +.+||+|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 35667899999999999984 67999999999999999987654 4578999999999999999999999999999
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEE
Q 004327 545 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 623 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Lla 623 (761)
|++||+.++. .+..+..|...+.+++|+|++. +|++++.|+.|++||+++++....+.. ...+.+++|+|++++|++
T Consensus 104 i~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999999866 4778888999999999999974 666899999999999999988877764 346899999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 624 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ .++..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999876 67788889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.+|++++.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999888 7789999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-41 Score=366.99 Aligned_cols=289 Identities=17% Similarity=0.279 Sum_probs=260.7
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
......+.+|.+.|+|++|+||+++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEec--CCCE
Q 004327 549 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 620 (761)
Q Consensus 549 Dl~t~~-----~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fsp--d~~~ 620 (761)
++.... .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23567788999999999999964 566899999999999999999988874 45688999987 4679
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CCCceEE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHS 697 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~--~~~~I~s 697 (761)
|++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++.. ..+..+.. +...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999876 44444433 2346899
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 698 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 698 l~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++|+|++.+|++++.|+.|+|||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888877 7789999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-42 Score=378.76 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.2
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+.....+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEe
Q 004327 548 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 615 (761)
Q Consensus 548 WDl~t~~------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~------~~~~i~~l~fs 615 (761)
||+.+.. .....+.+|.+.|.++.|.|++...|++|+.|++|++||+.+++.+..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 12456789999999999999877888899999999999999999887763 34568999997
Q ss_pred c-CCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004327 616 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 692 (761)
Q Consensus 616 p-d~~~Llags~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~ 692 (761)
+ ++..|++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++ .++..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 693 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 693 -------~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l----~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..|.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999888876 34 5799999999999999999999999999999
Q ss_pred C
Q 004327 761 K 761 (761)
Q Consensus 761 d 761 (761)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-40 Score=351.25 Aligned_cols=284 Identities=18% Similarity=0.315 Sum_probs=253.7
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
...+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-cCCCeeEEEEec-CCCEEEEEEc
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 626 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~-~~~~i~~l~fsp-d~~~Llags~ 626 (761)
+.++. .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++ .....+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCc-EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99876 478889999999999999996 56679999999999999877 4444554 456799999999 5788999999
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004327 627 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 702 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~~sp--dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp 702 (761)
|+.|++||+++......+. +|...|..++|+| ++.+|++++ |+.|++||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999987 778999999 999999999887 78899999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEE
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 758 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~--~LaSgs~DG~I~ 758 (761)
++.+|++++.|+.|+|||+.+++++ .+..|...+++++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999888 7778999999999999885 688888877554
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-39 Score=350.17 Aligned_cols=288 Identities=19% Similarity=0.335 Sum_probs=250.9
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCC-----CeEEEEeccCCcceEEEEEcCCCCEEEEEe
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS 540 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t-----~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 540 (761)
..+.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++.+|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3466778899999999999999965 8999999999999999863 345678899999999999999999999999
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC---
Q 004327 541 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR--- 617 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd--- 617 (761)
.|++|+|||+.+++ .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.........+...+.++.|.|.
T Consensus 85 ~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred CCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 99999999999876 478899999999999999986 5667999999999999985544444445667999999985
Q ss_pred ---CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 618 ---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 618 ---~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+.. ..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~ 238 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD 238 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence 34799999999999999999999999999999999999999999999999 999999999886 66666664 46
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l--------~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|.+++|+|++.+|++++. +.+++|++.....+ .+ ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 8999999999998877765 46999999887665 22 23567899999999999999999999999996
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=355.71 Aligned_cols=293 Identities=25% Similarity=0.435 Sum_probs=250.2
Q ss_pred eeEEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE---EeccCCcceEEEEEcCCCCEEEEEeCCC
Q 004327 468 TFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 468 ~~~~v~~l~~H~~-~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~---~l~~h~~~V~~v~fspdg~~Lasgs~DG 543 (761)
.+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3467788999998 99999999999999999999999999998876432 2368999999999999999999999999
Q ss_pred eEEEEecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEe-cCCCeeEEEEecCC
Q 004327 544 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRL 618 (761)
Q Consensus 544 ~I~VWDl~t~~~-~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~---~~~~~-~~~~i~~l~fspd~ 618 (761)
+|+|||+..... .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.. +..+. +...+.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999987653 467888999999999999986 5677999999999999987643 33443 44679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC------------ce
Q 004327 619 GRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GE 683 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~------------~~ 683 (761)
.+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |+.|+|||...... ..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 5578889999999999999999999999 99999999743211 13
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcE--------E--EEccCCCCeeEEEEeCCC-CEEEEE
Q 004327 684 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVN-GMVASA 751 (761)
Q Consensus 684 ~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~--------~--~l~~h~~~V~slafspdg-~~LaSg 751 (761)
++..+.. |...|.+++|++++..|++++.|+.|++|+...+.. . ...+|...|++++|+|++ .+||+|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 4444544 778899999999999999999999999999876431 1 235899999999999998 499999
Q ss_pred ECCCeEEEcC
Q 004327 752 SHDKCVKIWK 761 (761)
Q Consensus 752 s~DG~I~IWd 761 (761)
+.||.|+|||
T Consensus 323 s~Dg~v~~W~ 332 (345)
T 3fm0_A 323 SDDGEVAFWK 332 (345)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999999996
No 9
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-40 Score=362.07 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCc------------------ceEEEEEcCCCCEEEE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 538 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~------------------~V~~v~fspdg~~Las 538 (761)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec-C
Q 004327 539 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 617 (761)
Q Consensus 539 gs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fsp-d 617 (761)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999765 4778899999999999999975 56699999999999999999999888888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC--------
Q 004327 618 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 681 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t~~~i~~l-------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~-------- 681 (761)
+.+|++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+.+...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999976421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeC------CCCEEEEEEC
Q 004327 682 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 753 (761)
Q Consensus 682 -~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafsp------dg~~LaSgs~ 753 (761)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999999877 7789999999999986 6789999999
Q ss_pred CCeEEEcC
Q 004327 754 DKCVKIWK 761 (761)
Q Consensus 754 DG~I~IWd 761 (761)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.1e-39 Score=341.78 Aligned_cols=288 Identities=24% Similarity=0.460 Sum_probs=258.4
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
+.....+.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~d 627 (761)
|+.++. .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++++..+.. ...+.+++|+|++.+|++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999876 478889999999999999986 5667999999999999999998888764 4679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce---EEEEEeC
Q 004327 628 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHP 702 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I---~sl~fsp 702 (761)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||+.++ .++..+..+...+ ......+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999887 6777777666543 2233446
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEE--CCCeEEEcC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs--~DG~I~IWd 761 (761)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .||.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999887 7789999999999999999999997 699999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-39 Score=379.59 Aligned_cols=286 Identities=18% Similarity=0.288 Sum_probs=245.3
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 472 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
...+.+|.+.|++++|+|++. +|++|+.|++|++||..+++...++.+|...|++++|+|++++|++++.|++|+|||+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 345789999999999999987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------------------
Q 004327 551 ENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 604 (761)
Q Consensus 551 ~t~~~~i~~~~-------~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~------------------- 604 (761)
.++.. +..+. +|.+.|.+++|+|++ .+|++++.|++|++||+.+++++..+.
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 88764 55553 799999999999996 566799999999999999887665432
Q ss_pred -------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-c-------------
Q 004327 605 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------- 645 (761)
Q Consensus 605 -------------------------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l-~------------- 645 (761)
+...|.+++|+|++.+|++++.|+.|++||+.++.....+ .
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 3346899999999999999999999999999876443221 0
Q ss_pred --------------------------------------------------------------------CCCCCEEEEEEc
Q 004327 646 --------------------------------------------------------------------GHKNQVHSVCWN 657 (761)
Q Consensus 646 --------------------------------------------------------------------~h~~~I~sl~~s 657 (761)
.|...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 123457889999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC-CcEEE---EccC
Q 004327 658 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAH 732 (761)
Q Consensus 658 pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~-~~~~~---l~~h 732 (761)
|||++|++++ |+.|++||+.+... ..+.. ..|...|.+++|+|++++|++++.|+.|++||+.+ +++.. +..|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999999999 99999999976421 22333 67889999999999999999999999999999987 55542 2349
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 733 DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 733 ~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...|++++|+||+++||+|+.|++|+|||
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999999999999996
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-39 Score=380.84 Aligned_cols=306 Identities=22% Similarity=0.334 Sum_probs=256.3
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 511 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~ 511 (761)
.+++|+.|+.+++| +... ......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lw----------------d~~~---~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIF----------------EGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEE----------------ETTT---BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEE----------------ECCC---CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 46777777777776 2222 3456778999999999999999999999999999999999999
Q ss_pred eEEEEec-------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce----------------------------
Q 004327 512 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---------------------------- 556 (761)
Q Consensus 512 ~~~~~l~-------~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~---------------------------- 556 (761)
+.+..+. +|...|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 9988884 79999999999999999999999999999999865421
Q ss_pred --------------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-------------------
Q 004327 557 --------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------------- 603 (761)
Q Consensus 557 --------------i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~------------------- 603 (761)
...+.+|...|++++|+|++. +|++++.|+.|++||+.++.+...+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 234467999999999999974 6669999999999999876443221
Q ss_pred ----------------------------------------------------------------ecCCCeeEEEEecCCC
Q 004327 604 ----------------------------------------------------------------KCQSGATQMRFQPRLG 619 (761)
Q Consensus 604 ----------------------------------------------------------------~~~~~i~~l~fspd~~ 619 (761)
.+...+.+++|+|++.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0112357899999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE--eecCCCc
Q 004327 620 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK 694 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~--l~~~~~~ 694 (761)
+|++++.|+.|++||+.++.. +.. .+|...|++++|+|+|++|++++ |+.|++||+.+.. .++.. +..|...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence 999999999999999988653 233 57999999999999999999999 9999999997621 33322 3348899
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCc--E-EEEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--~-~~l~~h-~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|.+++|+|++++|++++.|+.|+|||+.++. . ..+.+| ...|++++|+|++. |++++.||+|++||
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 9999999999999999999999999998764 2 355688 89999999999998 99999999999996
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-39 Score=348.64 Aligned_cols=287 Identities=18% Similarity=0.356 Sum_probs=243.0
Q ss_pred eeEEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCeEEEEEcCC-------CeEEEEeccCCcceEEEEEcCCCC
Q 004327 468 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 534 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~laf-----Sp-dg~~Lasgs~Dg~I~VWdl~t-------~~~~~~l~~h~~~V~~v~fspdg~ 534 (761)
.+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---ecCCCeeE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 611 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~---~~~~~i~~ 611 (761)
+|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999876 4788899999999999999975 5668999999999999844332222 24456899
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC
Q 004327 612 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 680 (761)
Q Consensus 612 l~fspd~----------~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~ 680 (761)
++|+|++ .+|++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677788889999999999999999999999 9999999995432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE---EEc-----------cCCCCeeEEEEeCCCC
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 746 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l~-----------~h~~~V~slafspdg~ 746 (761)
. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|++++|+|++.
T Consensus 247 ~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 Y--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp S--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred c--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 2 22222 2456799999999998665 566888999999876543 222 6888999999999999
Q ss_pred EEEEEECCCeEEEcC
Q 004327 747 MVASASHDKCVKIWK 761 (761)
Q Consensus 747 ~LaSgs~DG~I~IWd 761 (761)
+|++|+.||.|+||+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=343.05 Aligned_cols=289 Identities=21% Similarity=0.330 Sum_probs=237.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC--eEEEEe-cc-CCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~--~~~~~l-~~-h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ .....+ .+ |...|.+++|+|++.+|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3467789999999999999987 9999999999999999875 455566 44 9999999999999999999999999
Q ss_pred EEEEecCCC------CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCeeEEE
Q 004327 545 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 613 (761)
Q Consensus 545 I~VWDl~t~------~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~----~~~~~~~-~~~~i~~l~ 613 (761)
|+|||++.. ...+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998642 12456788999999999999996 56779999999999999532 4455554 456799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEECCCCCC-----ce
Q 004327 614 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSK-----GE 683 (761)
Q Consensus 614 fspd~~~Llags~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~~spd--g~~Lasgs-Dg~I~IWdl~s~~~-----~~ 683 (761)
|+|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..+.. ..
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 67899988 99999999865321 12
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc--EE-E-EccCCC-CeeEEEEeC--CCCEEEEEECCC
Q 004327 684 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TL-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 755 (761)
Q Consensus 684 ~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--~~-~-l~~h~~-~V~slafsp--dg~~LaSgs~DG 755 (761)
+...+.. |...|.+++|++++ +|++++.|+.|+|||..++. .. . ...|.. .|++++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 79999999999999998774 23 2 357877 899999999 688999999999
Q ss_pred eEEEcC
Q 004327 756 CVKIWK 761 (761)
Q Consensus 756 ~I~IWd 761 (761)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6e-38 Score=361.81 Aligned_cols=281 Identities=28% Similarity=0.476 Sum_probs=251.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
.+..+.+|...|++++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 4566889999999999999999999999999999999865 456678899999999999999999999999999999996
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||.. ++.+..+. +...+.+++|+|++.+|++++.|+.
T Consensus 374 ~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 374 NG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp TC--CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CC--CEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 53 34788899999999999999975 45588899999999975 55555554 5567999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 630 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 630 I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
|++||. +++.+..+.+|...|.+++|+|++++|++++ |+.|++||.. + .++..+..|...|.+++|+|++++|+
T Consensus 450 v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 999996 5677888899999999999999999999999 9999999963 3 67888999999999999999999999
Q ss_pred EEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 709 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 709 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+++.|+.|+|||........+.+|.+.|++++|+||+++|+|++.||+|+|||
T Consensus 525 s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999975544448889999999999999999999999999999998
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=350.65 Aligned_cols=279 Identities=15% Similarity=0.208 Sum_probs=235.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC-----------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 545 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t-----------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I 545 (761)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5667799999999999999887 77888886321 01111222456789999999984 78899999999
Q ss_pred EEEecCCCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-E
Q 004327 546 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-R 620 (761)
Q Consensus 546 ~VWDl~t~~~~i---~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~-~ 620 (761)
+|||+++++... ..+.+|.+.|++++|+|++ .+|++|+.|+.|++||+++++++..+. +...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 2355899999999999996 566799999999999999999998887 456799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 696 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~ 696 (761)
|++++.|+.|++||+++++....+. .|...+.+++|+|+ +.+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 35667999999995 56888888 999999999887 67888899999999
Q ss_pred EEEEeCCC-CEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEcC
Q 004327 697 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 761 (761)
Q Consensus 697 sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs~DG~I~IWd 761 (761)
+++|+|++ .+|++++.|+.|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-38 Score=337.79 Aligned_cols=285 Identities=17% Similarity=0.245 Sum_probs=254.4
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 470 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 470 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.....+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeee-----------eEEe-cCC--Cee
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GAT 610 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~~~-----------~~~~-~~~--~i~ 610 (761)
+.++.. +..+. +...|.+++|+|++.. +++++.+ +.|++||+...... ..+. +.. .+.
T Consensus 103 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 998764 55555 8899999999999755 4566667 99999999765422 1222 222 789
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004327 611 QMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 611 ~l~fspd~~~Llags~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l 688 (761)
+++|+|++..|++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 256 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY 256 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence 999999999999999999999999999 788999999999999999999999999999 999999999887 555555
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCC--------------cEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 689 SCTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 689 ~~~~~~I~sl~fspdg~~L~sgs~dg--------------~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
. +...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 5 678899999999999999999988 8999999999888 77789999999999999999999999
Q ss_pred CCeEEEcC
Q 004327 754 DKCVKIWK 761 (761)
Q Consensus 754 DG~I~IWd 761 (761)
||.|+|||
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-39 Score=352.55 Aligned_cols=282 Identities=13% Similarity=0.161 Sum_probs=236.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEEcCCCeEE----EEeccCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~------Dg~I~VWdl~t~~~~----~~l~~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
...|.+.|++++|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 788999998776543 33457889999999999975 566788999
Q ss_pred EEEEecCCCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCC-
Q 004327 545 VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG- 619 (761)
Q Consensus 545 I~VWDl~t~~~~i---~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~- 619 (761)
|+|||+.+++... ....+|...|++++|+|++ .+|++|+.|+.|++||+++++++..+.. ...+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998765321 3455799999999999996 5566999999999999999999988874 56799999999875
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce
Q 004327 620 RILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t~~~i~~l--~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|++ .+|++++ |+.|++||++++ .++..+..+...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6888999999999999998766554 3467789999999975 6788888 999999999887 6777888899999
Q ss_pred EEEEEeCCC-CEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEcC
Q 004327 696 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 761 (761)
Q Consensus 696 ~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafsp-dg~~LaSgs~DG~I~IWd 761 (761)
.+++|+|++ .+|++++.|+.|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||.|+|||
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 789999999999999996
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-37 Score=329.51 Aligned_cols=288 Identities=19% Similarity=0.331 Sum_probs=246.7
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCCC-----eEEEEeccCCcceEEEEEcCCCCEEEEEe
Q 004327 467 FTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSS 540 (761)
Q Consensus 467 ~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~-----~~~~~l~~h~~~V~~v~fspdg~~Lasgs 540 (761)
..+....+|++|++.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344556789999999999999997 689999999999999998764 35677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCC
Q 004327 541 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL 618 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~ 618 (761)
.|+.|++|+...... ......+...+..+.+++++. +|++++.|+.+++||+.......... +...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999987653 666677888899999999865 55689999999999998665443322 34568889998764
Q ss_pred --CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce
Q 004327 619 --GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 619 --~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++.+|++++ |+.|++||+++. .++..+.. ...+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v 259 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDII 259 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceE
Confidence 4677888999999999999999999999999999999999999999999 999999999876 66666654 4679
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE----------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+++|+|++. +++++.|+.|+|||++++..+ ....|...|++++|+|++++||+|+.||.|+|||
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999876 667778999999999987655 2236889999999999999999999999999997
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-37 Score=327.60 Aligned_cols=280 Identities=18% Similarity=0.247 Sum_probs=250.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE---EEEec--cCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~---~~~l~--~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
..+|.+.|++++|+|++++|++++ ||.|++||+.++.. +..+. .|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 99999999987643 23333 7899999999999999999999999999999
Q ss_pred cCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC
Q 004327 550 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 550 l~t~~~-~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~d 627 (761)
+.++.. ....+..|...|.+++|+|++ .++++++.|+.|++||+++++.+..+. +...+.+++|+|++.+|++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998653 355678899999999999986 556688899999999999999888877 45679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
+.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+.. ...+..|...|.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999999888775 788999999999999999999 9999999998763 3456778899999999999999
Q ss_pred EEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 707 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.8e-38 Score=342.39 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe------EEEEeccCCcceEEEEEcCC----C---CE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 535 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~------~~~~l~~h~~~V~~v~fspd----g---~~ 535 (761)
......+.+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 455677899999999999998 799999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEecCCCCc----eeEEeecC-----CCCeEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------
Q 004327 536 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 596 (761)
Q Consensus 536 Lasgs~DG~I~VWDl~t~~~----~i~~~~~h-----~~~V~sl~fs----p~g~~llasgs~Dg~I~vWDl~t------ 596 (761)
|++++.||.|++||+.++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 16677778 5899999999 88765377899999999999998
Q ss_pred Ceeee-----EEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C---CCCEEEEEEc
Q 004327 597 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 657 (761)
Q Consensus 597 ~~~~~-----~~~--------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~---h---~~~I~sl~~s 657 (761)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 554 35679999999999 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 658 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 658 pdg~~Lasgs-D---g~I~IWdl~s~~~~~~i~~l~~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
|++.+|++++ | +.|++||+.++ ..+..+.. |...|.+++|+|++.+|++++.|+.|+|||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999887 67777777 899999999999999999999999999999
Q ss_pred CCCCcEE-EEc------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCeEEEcC
Q 004327 721 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 761 (761)
Q Consensus 721 l~~~~~~-~l~------~h---------------~~~V~slafspdg----------~~LaSgs~DG~I~IWd 761 (761)
+.+++.+ .+. .| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999887 666 67 8999999999998 7999999999999996
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.5e-37 Score=351.76 Aligned_cols=301 Identities=27% Similarity=0.463 Sum_probs=263.7
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.|+.+++| +.. + ..+..+.+|...|++++|+||+++|++++.|+.|++||. +
T Consensus 234 ~~l~~~~~d~~i~~w----------------~~~-~---~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~ 292 (577)
T 2ymu_A 234 QTIASASDDKTVKLW----------------NRN-G---QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-N 292 (577)
T ss_dssp SCEEEEETTSCEEEE----------------CTT-S---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred CEEEEEeCCCEEEEE----------------eCC-C---CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-C
Confidence 456666666666666 321 1 345678899999999999999999999999999999996 4
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+.+|...|++++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.|+
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~ 369 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVK 369 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEE
Confidence 5778889999999999999999999999999999999998753 3677889999999999999974 566899999999
Q ss_pred EEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 004327 591 YWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 591 vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D 668 (761)
+||.. ++.+..+. +...+.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ |
T Consensus 370 ~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 370 LWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 99965 55565555 5567999999999999999999999999995 5677888899999999999999999999999 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEE
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~L 748 (761)
+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|+|||........+.+|...|++++|+|++++|
T Consensus 448 ~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 448 KTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp SEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 9999999743 577788899999999999999999999999999999997554444888999999999999999999
Q ss_pred EEEECCCeEEEcC
Q 004327 749 ASASHDKCVKIWK 761 (761)
Q Consensus 749 aSgs~DG~I~IWd 761 (761)
|+++.||.|+|||
T Consensus 524 ~s~~~dg~v~lwd 536 (577)
T 2ymu_A 524 ASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEECcCEEEEEe
Confidence 9999999999997
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-39 Score=354.10 Aligned_cols=303 Identities=16% Similarity=0.205 Sum_probs=259.8
Q ss_pred CccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC----CeEEEEeccCCcceEEEEEc
Q 004327 455 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFS 530 (761)
Q Consensus 455 d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~v~fs 530 (761)
+..+++|+...+.....+..+ .|...|++++|+|++++|++|+.||.|+|||+.+ .+.+..+.+|...|++++|+
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 445555665554322222222 5889999999999999999999999999999987 45888899999999999999
Q ss_pred CC-CCEEEEEeCCCeEEEEecCCCC------ce--eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 531 PS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 531 pd-g~~Lasgs~DG~I~VWDl~t~~------~~--i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|.+++|+|++..+|++++.|+.|++||+++++.+.
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence 98 8999999999999999998865 22 223467999999999999977888899999999999999999988
Q ss_pred EEec-------CCCeeEEEEecCC-CEEEEEEcCC---eEEEEECCCC-eEEEEEc-CCCCCEEEEEEcC-CCCEEEEEe
Q 004327 602 VFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVETQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS 667 (761)
Q Consensus 602 ~~~~-------~~~i~~l~fspd~-~~Llags~dg---~I~IwDl~t~-~~i~~l~-~h~~~I~sl~~sp-dg~~Lasgs 667 (761)
.+.. ...+.+++|+|++ ..+++++.|+ .|++||++++ .++..+. +|...|.+++|+| ++.+|++++
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence 8875 4679999999997 5788888888 9999999986 6677777 8999999999999 899999999
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCcEEEEECCCCcEE-EEc--------------
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLS-------------- 730 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~l~-------------- 730 (761)
|+.|++||+.++ .++..+..|...|.+++|+|++ .+|++++.|+.|+|||+.+.... ...
T Consensus 283 ~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 283 RDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp SSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred CCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 999999999887 7788888999999999999999 89999999999999999876532 110
Q ss_pred ---------------------cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 731 ---------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 731 ---------------------~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|...|.+++|+|+|++|++++.||.|+|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 1667888999999999999999999999997
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=338.81 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=249.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
|.+.|++++|+|++++|++|+.||.|+||| .+++.+..+..|...|.+++|+|++.+|++++.|+.|++||+.++. .+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VM 184 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EE
Confidence 788999999999999999999999999999 6778889999999999999999999999999999999999998765 46
Q ss_pred EEeecCCCC---------------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEE
Q 004327 558 RTFTGHSTT---------------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRI 621 (761)
Q Consensus 558 ~~~~~h~~~---------------V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~L 621 (761)
..+..+... +.+++|++++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|++.+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 667767666 9999999874 46688889999999999988887775 45679999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 622 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 622 lags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
++++.|+.|++||+++++.+..+..|...|.+++|+|++ +|++++ |+.|++||+.++ ..+..+..+...|.+++|
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEE
Confidence 999999999999999999999999999999999999999 888888 999999999877 778888888999999999
Q ss_pred eCCCCEEEEEEcCCcEEEEECCCCc--------------------EE-EEccCCC--CeeEEEEeCCCCEEEEEECCCeE
Q 004327 701 HPTFPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 701 spdg~~L~sgs~dg~I~IwDl~~~~--------------------~~-~l~~h~~--~V~slafspdg~~LaSgs~DG~I 757 (761)
+|++.+|++++.|+.|++||+.++. .+ .+..|.. .|++++|+|++++|++++.||.|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 9999999999999999999998877 55 7778866 99999999999999999999999
Q ss_pred EEcC
Q 004327 758 KIWK 761 (761)
Q Consensus 758 ~IWd 761 (761)
+|||
T Consensus 419 ~iw~ 422 (425)
T 1r5m_A 419 SVVA 422 (425)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=329.18 Aligned_cols=271 Identities=20% Similarity=0.280 Sum_probs=245.7
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
..++++|+.|+.+++|.. ..+ .......+.+|...|.+++|++++.++++++.|++|+|||+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~----------------~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKW----------------RDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp -CEEEEEETTSCEEEEEE----------------ETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEEC----------------CCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 357889999988888832 111 233455689999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 510 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 510 t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
+++.+..+..|...+.+++|+|++++|++++.||.|++||++++.. ...+..|...|.+++|+|++ .+|++|+.|+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDG-KYLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCC-CEEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999998764 66778899999999999997 566689999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 004327 590 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 667 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs- 667 (761)
++||+++++++..+.. ...+.+++|+|++.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999888874 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 668 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
|+.|++||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 269 D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999887 8888999999999999999999999999999999999963
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-37 Score=344.20 Aligned_cols=268 Identities=24% Similarity=0.459 Sum_probs=242.3
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|.. .++. ....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~----------------~~~~---~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDY----------------ETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEET----------------TTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEEC----------------CCCc---EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 57889999888888832 2221 3456889999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+.++.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.+++|+|++ .++++|+.|+.|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999876 478899999999999999996 5677999999999
Q ss_pred EEECCCCeeeeEEe-cCCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004327 591 YWSINNGSCAGVFK-CQSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN 649 (761)
Q Consensus 591 vWDl~t~~~~~~~~-~~~~i~~l~fspd--------------------~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~ 649 (761)
+||+.++++...+. +...+.+++|+|+ +.+|++++.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 99999998887775 4456899999996 56899999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
.|.+++|+|++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 999999999876 6778888999999999999999999999999999999863
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.6e-37 Score=332.76 Aligned_cols=282 Identities=15% Similarity=0.190 Sum_probs=246.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
+..|.++|++++|+|++++||+++.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEe--cCCCeeEEEEecCCCEEEEEEc
Q 004327 553 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 553 ~~~~-i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~---~~~~~--~~~~i~~l~fspd~~~Llags~ 626 (761)
+... ...+..|...|.+++|+|++ .+|++++.|+.|++||++.+.. ...+. +...+.+++|+|++.+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 23446789999999999996 5666888999999999988763 22222 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004327 627 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 627 dg~I~IwDl------------------~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~ 687 (761)
|+.|++||+ ..++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999877 67788
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC--CcE---------------------------------------
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 726 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~--~~~--------------------------------------- 726 (761)
+..+...|.+++|+|++.+|+++ .|+.|++||+.+ +..
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 421
Q ss_pred EEE-ccCCCCeeEEEEe-CCC---CEEEEEECCCeEEEcC
Q 004327 727 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 761 (761)
Q Consensus 727 ~~l-~~h~~~V~slafs-pdg---~~LaSgs~DG~I~IWd 761 (761)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-36 Score=358.79 Aligned_cols=286 Identities=21% Similarity=0.357 Sum_probs=244.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCC-----CeEEEEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 469 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t-----~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
+.....+.+|++.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556789999999999999864 7999999999999999875 34567889999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEEEEecCC
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL 618 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----~~~~i~~l~fspd~ 618 (761)
|+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...+.+++|+|++
T Consensus 452 g~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 GELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp SEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CcEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999865 4788899999999999999975 45699999999999987554333322 34568999999986
Q ss_pred --CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce
Q 004327 619 --GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 619 --~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
..+++++.|+.|++||+++.++...+.+|...|++++|+|++.+|++++ |+.|++||+.++ .++..+.. ...|
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v 605 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVI 605 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcE
Confidence 5799999999999999999999999999999999999999999999999 999999999887 56666553 5679
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCC
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-------------------~~~V~slafspdg~~LaSgs~DG 755 (761)
.+++|+|++.+|+++ .++.|+|||+.++..+ .+..+ ...|++++|+|++++|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 999999999866554 5667999999998876 22211 12378999999999999999999
Q ss_pred eEEEcC
Q 004327 756 CVKIWK 761 (761)
Q Consensus 756 ~I~IWd 761 (761)
.|+|||
T Consensus 685 ~i~iW~ 690 (694)
T 3dm0_A 685 VIRVWG 690 (694)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999996
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=333.45 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=211.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEE----eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~----l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
.|...|++++|+||+ .|++|+.||+|+|||+.+++.+.. +.+|...|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 788999999999999998865433 458999999999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEcCC
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 628 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~---~~~i~~l~fspd~-~~Llags~dg 628 (761)
+. .+..+.+|...|++++|++++..+|++|+.|+.|++||++++++...+.. ...+.+++|+|++ .+|++++.||
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58899999999999999999988999999999999999999988877643 3358899999964 5677889999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ + +..+.+|...|.+++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 3 3456789999999999999875
Q ss_pred -EEEEEcCCcEEEEECCCCcE
Q 004327 707 -LLVIGCYETLELWNMTENKT 726 (761)
Q Consensus 707 -L~sgs~dg~I~IwDl~~~~~ 726 (761)
|++++.|+.|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999987543
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-36 Score=320.05 Aligned_cols=271 Identities=19% Similarity=0.304 Sum_probs=237.9
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.|+.+++| +..++ ..+..+..|..+|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 26 ~~l~s~~~dg~v~lW----------------d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 26 PWVLTTLYSGRVELW----------------NYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp SEEEEEETTSEEEEE----------------ETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCcEEEE----------------ECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 578888888887777 33333 34667889999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|++|+.|+.|+
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~ 166 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999876667788999999999999997678888999999999
Q ss_pred EEECCCCeeeeEEe--cCCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 591 YWSINNGSCAGVFK--CQSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 591 vWDl~t~~~~~~~~--~~~~i~~l~fsp--d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
+||++.+.....+. ....+..+.|+| ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|+++
T Consensus 167 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 99998877665554 235688889887 67799999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCC
Q 004327 667 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 723 (761)
Q Consensus 667 s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~ 723 (761)
+ |+.|++||+.+. .++..+..+...+.+++|+|++. .+++++.++.+.+|++.+
T Consensus 247 s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 247 SEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred cCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9 999999999887 77888888889999999999885 234455566688888765
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-36 Score=314.34 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=249.1
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 468 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
.+.....+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34677889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEec-CCCEEEE
Q 004327 548 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 623 (761)
Q Consensus 548 WDl~t~~--~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fsp-d~~~Lla 623 (761)
|++.... ..+..+.+|...|.+++|. ..++++++.|+.|++|| .+.....+. +...+.++.|.| +++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788999999999994 35777999999999999 566666555 556789999988 8899999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004327 624 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 701 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fs 701 (761)
++.|+.|++|| ..+....+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566777777 899999999999998 66666 999999999887 6788888899999999999
Q ss_pred CCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 702 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 702 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|++ .|++++.|+.|++||+.+++.+ .+..|...|++++|+|++. +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 7778999999999999998 66799999999996
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.1e-37 Score=331.42 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.3
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEEcCCCeEEEEecc-----CCcceEEEEEcCC----CCEEEEE
Q 004327 473 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 539 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-----h~~~V~~v~fspd----g~~Lasg 539 (761)
....+|.++|++++|+|+ ..++++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344589999999999984 45666777778999999998877666643 5678999999998 6799999
Q ss_pred eCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE----ecCCCeeEEEEe
Q 004327 540 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 615 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~----~~~~~i~~l~fs 615 (761)
+.||.|++||+.++.. +..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...+.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998664 77888999999999999954678889999999999999999988887 356789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 616 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 616 pd~~~Llags~dg~I~IwDl~t~~~i~~----------------------------l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
|++.+|++++.||.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 23499999999998 77899988
Q ss_pred -CCeEEEEECCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCcEEEEECCCCcE-----EE
Q 004327 668 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 728 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~-----------~~~i~~l~~~~~~I~sl~fspd--g~~L~sgs~dg~I~IwDl~~~~~-----~~ 728 (761)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987532 1347778888999999999999 99999999999999999998753 25
Q ss_pred EccC--CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 729 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 729 l~~h--~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-36 Score=329.11 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=237.5
Q ss_pred eEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCCCeEEEEec--cCCcceEEEEEcC-CCCEEEEEeCCCe
Q 004327 469 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 544 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~v~fsp-dg~~Lasgs~DG~ 544 (761)
+..+..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45667889999999999999999 999999999999999999888777765 6999999999999 7899999999999
Q ss_pred EEEEecCCCCceeEEeecC---CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-
Q 004327 545 VRVWDTENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 619 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h---~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~- 619 (761)
|++||+.+. .+..+..+ ...|.+++|+|++ .+|++++.|+.|++||++ ++.+..+. +...+.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999963 35555444 4889999999996 466799999999999995 55666655 567799999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEee----
Q 004327 620 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 689 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~---- 689 (761)
.|++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6677766 5999999999999 999999999 9999999998875433332111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEcc--CCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 690 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 690 ~~~----------~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.. |...+.+++|+|++.+|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999999887 5554 567888889999999999997 999
Q ss_pred EEEcC
Q 004327 757 VKIWK 761 (761)
Q Consensus 757 I~IWd 761 (761)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=322.62 Aligned_cols=287 Identities=16% Similarity=0.203 Sum_probs=241.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCeEEEEEcCCCeEEEEe-ccCCcceEEEEEcCC---CCEEEEEeCCCe
Q 004327 473 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 544 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~L-asgs~---Dg~I~VWdl~t~~~~~~l-~~h~~~V~~v~fspd---g~~Lasgs~DG~ 544 (761)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999655 56655 899999999988766443 378999999999998 699999999999
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecC-----CCeeEE
Q 004327 545 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ-----SGATQM 612 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~~~V~sl~f------sp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~~~~-----~~i~~l 612 (761)
|++||+.++...+..+.+|...|.+++| +|++ .+|++++.|+.|++||++++. .+..+... ..+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877568889999999999966 4565 567799999999999999876 56666432 267788
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEECCCCCCcee
Q 004327 613 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 613 ~----fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~sp---dg~~Lasgs-Dg~I~IWdl~s~~~~~~ 684 (761)
. |+|++.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 7 678999999999999999999999987555 45889999999999 999999999 99999999987643322
Q ss_pred EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCCCc-------------------EE-EEccCCCCeeEEEE
Q 004327 685 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK-------------------TL-TLSAHDKLVSSLAA 741 (761)
Q Consensus 685 i~--~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~~-------------------~~-~l~~h~~~V~slaf 741 (761)
+. .+..|...|.+++|+|++. +|++++.|+.|++||+..+. .+ .+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 4458899999999999998 89999999999999987532 22 67789999999999
Q ss_pred eCCCCEEE-EEECCCeEEEcC
Q 004327 742 STVNGMVA-SASHDKCVKIWK 761 (761)
Q Consensus 742 spdg~~La-Sgs~DG~I~IWd 761 (761)
+|++.+|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=329.04 Aligned_cols=279 Identities=16% Similarity=0.247 Sum_probs=245.8
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEc----CCCe------EEEEecc----------CCcceEEEEEcCCC
Q 004327 475 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSL 533 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl----~t~~------~~~~l~~----------h~~~V~~v~fspdg 533 (761)
...|.+.|++++|+|+++ +||+|+.||.|+|||+ .+++ ....+.. |...|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 8887 4555544 68899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-----
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----- 608 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~----- 608 (761)
++|++++.||.|++||.. + ..+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 121 ~~l~~~~~dg~i~i~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKT-G-ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp SEEEEEETTSCEEEEETT-S-CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred CEEEEEeCCCeEEEEeCC-C-CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 999999999999999943 3 35788889999999999999965 566888899999999999998887765443
Q ss_pred -----------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEC
Q 004327 609 -----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 676 (761)
Q Consensus 609 -----------i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl 676 (761)
+.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp --------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred eeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 888999998 6799999999999999999998889999999999999999999999999 999999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 677 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 677 ~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
.++ ..+..+..+...|.+++|+|++ ++++++.|+.|++||+.+++.+ .+..|...|.+++|+|++.+|++++.||
T Consensus 277 ~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 277 GNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp SSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 876 5666777889999999999999 9999999999999999998877 6678999999999999999999999999
Q ss_pred eEEEcC
Q 004327 756 CVKIWK 761 (761)
Q Consensus 756 ~I~IWd 761 (761)
.|+|||
T Consensus 353 ~i~i~~ 358 (425)
T 1r5m_A 353 QVNVYD 358 (425)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-36 Score=332.48 Aligned_cols=311 Identities=15% Similarity=0.219 Sum_probs=255.4
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 004327 426 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 505 (761)
Q Consensus 426 l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 505 (761)
+.....++++++.|+.+.+|...... ....+..| ..+.+..|++++++||+|+.||.|+|
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRD-------------------GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKV 123 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEE-------------------TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccc-------------------eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEE
Confidence 34444677888888888887322111 11122334 33555578999999999999999999
Q ss_pred EEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 506 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 506 Wdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++ .+|++++.
T Consensus 124 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 201 (420)
T 3vl1_A 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRG-RNVLSASL 201 (420)
T ss_dssp ECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTT-TEEEEEET
T ss_pred EeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCC-CEEEEEcC
Confidence 99999999998899999999999999999999999999999999998764 77888999999999999996 45669999
Q ss_pred CCcEEEEECCCCeeeeEEec----C---------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004327 586 NSEIRYWSINNGSCAGVFKC----Q---------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC 640 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~~----~---------------------~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~ 640 (761)
|+.|++||+++++.+..+.. . ..+.+++|+|++.+|++++.||.|++||+++++.
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 99999999999998888763 2 3344455678889999999999999999999987
Q ss_pred EEEEc-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 641 RLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 641 i~~l~-~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
+..+. .|...|.+++|+|++. +|++++ |+.|++||++++.. .+..+.. +...|.++.| +++.+|++++.|+.|
T Consensus 282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 282 TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 77765 4888999999999998 999998 99999999988642 3455555 5667777755 577899999999999
Q ss_pred EEEECCCC----------cEEEEccCCCCeeEEEEeCCCC---EEEEEECCCeEEEcC
Q 004327 717 ELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 761 (761)
Q Consensus 717 ~IwDl~~~----------~~~~l~~h~~~V~slafspdg~---~LaSgs~DG~I~IWd 761 (761)
++||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 99998763 2335668899999999999999 788888999999995
No 37
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=337.79 Aligned_cols=285 Identities=13% Similarity=0.234 Sum_probs=237.4
Q ss_pred EEEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCC---Ce---EEEEeccCCcceEEEEEcCCCCEEEEEeC
Q 004327 470 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA 541 (761)
Q Consensus 470 ~~v~~l-~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t---~~---~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 541 (761)
..+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 356667 89999999999999 999999999999999999876 33 33344 59999999999999999999999
Q ss_pred CCeEEEEecC---CCCceeEEeec------------CCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004327 542 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 604 (761)
Q Consensus 542 DG~I~VWDl~---t~~~~i~~~~~------------h~~~V~sl~--fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~ 604 (761)
||+|++||++ ++.. ...+.. +...+.++. ++++ ..++++++.|+.|++||+++++++..+.
T Consensus 132 dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 3332 222222 445566666 4455 4677799999999999999999998887
Q ss_pred c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 004327 605 C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS 675 (761)
Q Consensus 605 ~---~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~~sp----dg~~Lasgs-Dg~I~IWd 675 (761)
. ...+.+++|+|++.+|++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|++||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 5789999999999999999999999999999999999886 6888999996664 677999998 99999999
Q ss_pred CCCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-E
Q 004327 676 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 728 (761)
Q Consensus 676 l~s~~~~~~i~~l~~--------------------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~ 728 (761)
++++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9877 45554442 44568889999 7789999999999999999887754 3
Q ss_pred Ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCeEEEcC
Q 004327 729 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 761 (761)
Q Consensus 729 l~~-------------------------------------h~~~V~slafspd--g~~LaSgs~DG~I~IWd 761 (761)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 332 8999999999998 77999999999999996
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-35 Score=317.59 Aligned_cols=265 Identities=23% Similarity=0.363 Sum_probs=234.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|. ..++ ..+..+..|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 68 ~~l~s~s~Dg~v~iWd----------------~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 68 RLLLSASQDGKLIIWD----------------SYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp SEEEEEETTTEEEEEE----------------TTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEE----------------CCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 5788898888888773 2222 24556788999999999999999999999999999999986
Q ss_pred C----eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 511 F----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 511 ~----~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
. .....+.+|...|.++.|++++ .|++++.|++|++||+.++. .+..+.+|...|.+++|+|++ .++++|+.|
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d 205 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDT-RLFVSGACD 205 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred CCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCC-CEEEEEeCC
Confidence 5 4567788999999999999876 48999999999999999866 478889999999999999986 577799999
Q ss_pred CcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEE
Q 004327 587 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYL 663 (761)
Q Consensus 587 g~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~~spdg~~L 663 (761)
+.|++||++++.++..+. +...|.+++|+|++.+|++++.|+.|++||+++++.+..+.. +...|.+++|+|++.+|
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 999999999999888886 456799999999999999999999999999999988877653 33479999999999999
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 664 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 664 asgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 286 ~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999 999999999876 67788889999999999999999999999999999997
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.4e-35 Score=313.11 Aligned_cols=274 Identities=17% Similarity=0.267 Sum_probs=237.6
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|.... ........+..+.+|...|++++|+|++++|++|+.|++|+|||+.+
T Consensus 31 ~~l~s~s~D~~v~~W~~~~--------------~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTG--------------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96 (319)
T ss_dssp TEEEEEETTSEEEEEEEEE--------------ETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEecCCccEEEecCCC--------------CCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 5788999998888883211 01112345778899999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-----CcEEEEEeC
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDN 585 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g-----~~llasgs~ 585 (761)
++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++. ..+..+.+|...|.+++|.|.. ..++++++.
T Consensus 97 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 97 GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 999999999999999999999999999999999999999974 3577888999999999999863 347889999
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 586 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~La 664 (761)
|+.|++||+++.+....+. +...+.+++|+|++.+|++++.||.|++||+++++.+..+.. ...|.+++|+|++.+|+
T Consensus 175 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEE
T ss_pred CCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEE
Confidence 9999999999988877765 456799999999999999999999999999999999998875 46899999999999999
Q ss_pred EEeCCeEEEEECCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 665 SVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 665 sgsDg~I~IWdl~s~~~~~~i~~l~--------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
++.++.+++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 254 ~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 254 AATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999888999999765 3444432 24567899999999999999999999999998654
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-37 Score=334.88 Aligned_cols=284 Identities=14% Similarity=0.171 Sum_probs=229.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC--eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~--~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++++|++++.|++|+|||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457789999999999999999999999999999988 77888999999999999999999999999999999999998
Q ss_pred CC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEe--cCCCeeEEEEecCCCEEEEEE
Q 004327 553 PD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 553 ~~--~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~---~~~~~~--~~~~i~~l~fspd~~~Llags 625 (761)
+. .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...+.+++|+|++.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 65 23567788999999999999865 55688889999999999876 355555 567799999999999999999
Q ss_pred cCCeEEEEECC------------------CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc-eeE
Q 004327 626 IENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECI 685 (761)
Q Consensus 626 ~dg~I~IwDl~------------------t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~-~~i 685 (761)
.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..+
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 99999999985 35566667 8999999999999999999999 999999999987431 126
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcE-------------------------------------E-
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------------------------------------L- 727 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~-------------------------------------~- 727 (761)
..+..|...|.+++|+|++.+|++++.++ +.+|+...... .
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 67788999999999999999887776554 55776652210 0
Q ss_pred ---------------EEccCCCCeeEEEEeCCC-C---EEEEEECCCeEEEcC
Q 004327 728 ---------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 761 (761)
Q Consensus 728 ---------------~l~~h~~~V~slafspdg-~---~LaSgs~DG~I~IWd 761 (761)
....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 001299999999976644 3 699999999999997
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=333.45 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=244.5
Q ss_pred CeEEEEEcCCCC-EEEEE----------ECCCeEEEEEcCCCe---EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 004327 481 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 481 ~V~~lafSpdg~-~Lasg----------s~Dg~I~VWdl~t~~---~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
.|.+++|+|+++ +||+| +.|+.|+|||+.++. .+..+ .|...|++++|+|++.+|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 488999999987 99999 889999999999875 33334 5889999999999999999999999999
Q ss_pred EEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeEE----ecCCCeeEEE
Q 004327 547 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQMR 613 (761)
Q Consensus 547 VWDl~t---~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~------~~~~~----~~~~~i~~l~ 613 (761)
+||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 3335788899999999999999966788899999999999999876 33222 3556799999
Q ss_pred EecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEECCCCCC
Q 004327 614 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK 681 (761)
Q Consensus 614 fspd-~~~Llags~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~~spdg-~~Lasgs-Dg---~I~IWdl~s~~~ 681 (761)
|+|+ +..|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||++++.
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~- 251 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN- 251 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence 9999 788999999999999999999999988876 7899999999997 6888888 77 99999998753
Q ss_pred ceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeE
Q 004327 682 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV 757 (761)
Q Consensus 682 ~~~i~~l~-~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg-~~LaSgs~DG~I 757 (761)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++ .+|++++.||.|
T Consensus 252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3445566 7889999999999 8999999999999999999998887 777999999999999999 899999999999
Q ss_pred EEcC
Q 004327 758 KIWK 761 (761)
Q Consensus 758 ~IWd 761 (761)
+|||
T Consensus 331 ~iw~ 334 (416)
T 2pm9_A 331 EVQT 334 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 42
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.7e-36 Score=326.51 Aligned_cols=289 Identities=13% Similarity=0.216 Sum_probs=228.5
Q ss_pred cceEEEEecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeE-EEEEecCCCCCeE
Q 004327 405 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT-EFQLIPASTSKVE 483 (761)
Q Consensus 405 ~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~-~v~~l~~H~~~V~ 483 (761)
....+.|++|+ +++++++.|. +++| |...++|+..++.... ......+|...|+
T Consensus 44 ~V~~v~fSpDG---------------~~las~s~d~-~~~w---------d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~ 98 (357)
T 4g56_B 44 QIGAVRYRRDG---------------ALLLAASSLS-SRTW---------GGSIWVFKDPEGAPNESLCTAGVQTEAGVT 98 (357)
T ss_dssp EEEEEEECSSS---------------CEEEEEECSS-SSSC---------CEEEEEESSCC---CGGGCSEEEECSSCEE
T ss_pred CEEEEEECCCC---------------CEEEEEcCCC-Cccc---------cCeEEEEECCCCCcceeEecccCCCCCCEE
Confidence 46677888877 4666666542 2333 3344455544443211 1223457899999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEE----EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~----~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+++|+|+++ +++++.||+|+|||+.+++.. ....+|...|++|+|+|++++|++|+.|++|+|||+.++. .+..
T Consensus 99 ~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~ 176 (357)
T 4g56_B 99 DVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKS 176 (357)
T ss_dssp EEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence 999999985 556788999999999887654 3445899999999999999999999999999999999865 4788
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-GRILAAAIENYISILDV 635 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~-~~Llags~dg~I~IwDl 635 (761)
+.+|...|++++|++++..++++++.|+.|++||+++++....+. ....+.+++|+|++ .+|++++.|+.|++||+
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 899999999999999988888899999999999999988776554 33558999999975 56778889999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 004327 636 ETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 712 (761)
Q Consensus 636 ~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp-dg~~L~sgs~ 712 (761)
++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ +++.. ..|...|.+++|+| ++.+|++++.
T Consensus 257 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcC
Confidence 9999999999999999999999987 5788888 999999999876 55544 47899999999998 7899999999
Q ss_pred CCcEEEEECCCC
Q 004327 713 YETLELWNMTEN 724 (761)
Q Consensus 713 dg~I~IwDl~~~ 724 (761)
|+.|++||+...
T Consensus 333 Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 DHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEECC--
T ss_pred CCeEEEEECCCC
Confidence 999999999654
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-34 Score=314.17 Aligned_cols=267 Identities=22% Similarity=0.349 Sum_probs=234.8
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|.. ..+ .....+..|...|.+++|+|+|.+||+|+.|+.|++|++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~----------------~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDS----------------FTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEET----------------TTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEEC----------------CCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 57889999888888732 222 23455678899999999999999999999999999999864
Q ss_pred C------eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-CcEEEEE
Q 004327 511 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC 583 (761)
Q Consensus 511 ~------~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g-~~llasg 583 (761)
. .....+..|...|.+++|+|++..|++++.|++|++||++++. .+..+.+|...|.+++|+|+. ..+|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 3 3456677899999999999999999999999999999999876 478899999999999999863 4688899
Q ss_pred eCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCC
Q 004327 584 DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG 660 (761)
Q Consensus 584 s~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~~spdg 660 (761)
+.|+.|++||+++++++..+. +...|.+++|+|++..|++++.|+.|++||+++...+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 999999999999999988886 4567999999999999999999999999999999887776543 3478999999999
Q ss_pred CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 661 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 661 ~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
.+|++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 999999999877 67778889999999999999999999999999999996
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=311.16 Aligned_cols=280 Identities=20% Similarity=0.344 Sum_probs=228.5
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++| +...+..........+|.+.|++++|+|++++||+|+.|++|+|||+.+
T Consensus 29 ~~las~~~D~~i~iw----------------~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 29 TLLASCGGDRRIRIW----------------GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp SCEEEEETTSCEEEE----------------EEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CEEEEEcCCCeEEEE----------------EcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 577888888888777 2222322223334579999999999999999999999999999999887
Q ss_pred C--eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 511 F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 511 ~--~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~--~i~~~~~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
. +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++.|
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d 171 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYD 171 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETT
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCC
Confidence 6 45788999999999999999999999999999999999987542 3567889999999999999965 66699999
Q ss_pred CcEEEEECCCCeee--eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEcC-C
Q 004327 587 SEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-H 647 (761)
Q Consensus 587 g~I~vWDl~t~~~~--~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t---------------~~~i~~l~~-h 647 (761)
+.|++||++.+... ..+. +...|.+++|+|++.+|++++.|+.|++||... .+++..+.+ |
T Consensus 172 ~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999999887543 3443 456799999999999999999999999999632 234556665 8
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEE
Q 004327 648 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 719 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~------~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~Iw 719 (761)
...|.+++|+|++.+|++++ |+.|++|+....... ...+....|...|.+++|+|++. +|++++.|+.|++|
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 89999999999999999998 999999998764311 11223457889999999999984 89999999999999
Q ss_pred ECCCCcEE
Q 004327 720 NMTENKTL 727 (761)
Q Consensus 720 Dl~~~~~~ 727 (761)
++.+++..
T Consensus 332 ~~~~~~~~ 339 (345)
T 3fm0_A 332 KYQRPEGL 339 (345)
T ss_dssp EECC----
T ss_pred EecCCCCc
Confidence 99887754
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.9e-35 Score=309.85 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=242.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 555 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-- 555 (761)
|.++|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 445699999999999999998888888877665555555558999999999999999999998 99999999987543
Q ss_pred eeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 556 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 556 ~i~~~~--~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~--~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
.+..+. .|...|.+++|+|++ .++++++.|+.|++||+.+++ ....+. +...+.+++|+|++.++++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 789999999999986 466688889999999999877 344444 44568999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 631 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999 999999999886 4555543 6778999999999999999
Q ss_pred EEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 710 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888999999999999999999999999999999996
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-34 Score=322.14 Aligned_cols=281 Identities=18% Similarity=0.301 Sum_probs=246.8
Q ss_pred eEEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 004327 469 FTEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 547 (761)
Q Consensus 469 ~~~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~V 547 (761)
......+.+|.+.| .|+.| ++++|++|+.||+|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 34566788999885 66666 56799999999999999999999999999999999999999987 9999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCeeee-----------------------EE
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VF 603 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vWDl~t~~~~~-----------------------~~ 603 (761)
||++++. .+..+.+|...|.+++|++. +..++++|+.|+.|++||++++.... .+
T Consensus 188 wd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 9999876 47888999999999999963 34778899999999999998765332 22
Q ss_pred e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC
Q 004327 604 K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 604 ~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
. +...+. ++++++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||+.++
T Consensus 267 ~~~~~~v~--~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-- 342 (464)
T 3v7d_B 267 RGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-- 342 (464)
T ss_dssp CCCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--
T ss_pred cCccceEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--
Confidence 2 222333 4477889999999999999999999999999999999999999999999999999 999999999887
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.++..+..|...|.++.|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 -~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 -ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp -EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred -cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999997 5789999999999999999988776667888899999999999999998 89999996
No 47
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-35 Score=314.01 Aligned_cols=278 Identities=14% Similarity=0.144 Sum_probs=242.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe---EEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 546 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~---~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~ 546 (761)
.+....+|.+.|++++|+|++++|++++.|+.|+|||+.++. ....+..|...|++++|+|++. +|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999998876 3455568999999999999999 999999999999
Q ss_pred EEec-CCCCceeEEeec--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEE
Q 004327 547 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRF 614 (761)
Q Consensus 547 VWDl-~t~~~~i~~~~~--h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t---------~~~~~~~~~~~~i~~l~f 614 (761)
+||+ .++. ...+.+ |...|.+++|+| ..++++++.|+.|++||+++ ++++..+.+...+.+++|
T Consensus 83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPS--FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSS--EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEeccCCc--eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 9999 7754 477888 999999999999 46777999999999999987 777777777788999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCC---CceeEE
Q 004327 615 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH 686 (761)
Q Consensus 615 spd~~~Llags~dg~I~IwDl~t-~~--~i~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IWdl~s~~---~~~~i~ 686 (761)
++++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... ......
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9986 99999999999999998 43 3445556888999999999 999999999 9999999998751 013445
Q ss_pred EeecCCC---------ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccC-CCCeeEEEEeCCCCEEEEEECCC
Q 004327 687 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 687 ~l~~~~~---------~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~slafspdg~~LaSgs~DG 755 (761)
.+..+.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|++++ |++.+|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 5555544 9999999999999999999999999999999877 67777 99999999 9999999999999
Q ss_pred e
Q 004327 756 C 756 (761)
Q Consensus 756 ~ 756 (761)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
No 48
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=311.16 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.7
Q ss_pred eeEEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEEcCC-CeEE-EEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 468 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 468 ~~~~v~~l~~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWdl~t-~~~~-~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
++..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34567788999999999999999 69999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~f--sp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~ 620 (761)
|.|++||+.++. ...+..|...|.+++| ++++ .+|++++.|+.|++||+++++.+..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999865 3446779999999999 7774 567799999999999999999999998888777777765 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spdg~~----Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 9999999999999999875443332 24456677777665543 77777 99999999987654345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 694 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 694 ------------~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++.+|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 777899999999999999999999998865544
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=349.39 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=160.2
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.|++|.. ... ... ....|...|++++|+| +++|++++.|++|+|||+.+
T Consensus 30 ~~lAsgs~Dg~I~lw~~----------------~~~---~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQ----------------QQV---EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp TEEEEEETTSEEEEECS----------------TTC---EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEeC----------------CCc---EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 68899999999988822 111 111 2235888999999999 88999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee----------EEeecCCCCeEEEEEcCCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKEDLL 580 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i----------~~~~~h~~~V~sl~fsp~g~~ll 580 (761)
++.+..+. |...|++++|+|++++|++|+.||+|++||+++..... ..+.+|.+.|++++|+|++..++
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 99988885 67899999999999999999999999999999765321 23467899999999999866788
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004327 581 CSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCR 641 (761)
Q Consensus 581 asgs~Dg~I~vWDl~t~~~~~~~~~~-------------------~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i 641 (761)
++|+.|+.| +||+++++++..+..+ ..|.+++|+|++.+|++++.||.|++||+++++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 899999999 9999999988887654 56999999999999999999999999999877654
Q ss_pred E
Q 004327 642 L 642 (761)
Q Consensus 642 ~ 642 (761)
.
T Consensus 247 ~ 247 (902)
T 2oaj_A 247 M 247 (902)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-33 Score=315.64 Aligned_cols=299 Identities=17% Similarity=0.252 Sum_probs=256.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|. ..++ ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus 133 ~~l~sgs~dg~i~vwd----------------~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 133 NYVITGADDKMIRVYD----------------SINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp TEEEEEETTSCEEEEE----------------TTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEE----------------CCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 4788888888888773 2222 3566788999999999999988 999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEc--CCCCEEEEEeCCCeEEEEecCCCCce----------------------eEEeecCCCC
Q 004327 511 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTT 566 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fs--pdg~~Lasgs~DG~I~VWDl~t~~~~----------------------i~~~~~h~~~ 566 (761)
++.+..+.+|...|.+++|+ +++.+|++++.||+|++||+.+.... +..+.+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99999999999999999998 57789999999999999999875432 4567889999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 567 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 567 V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
|.++..+ ..++++++.|+.|++||+++++++..+. +...+.+++|+|++..+++++.||.|++||+++++++..+.
T Consensus 273 v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 273 VRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 9888544 3577799999999999999999988886 45679999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
+|...|.+++|+ +.+|++++ |+.|++||+.+.. ..... .+...+..++|++++.+|++++ |+.|++||+.++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999997 57888888 9999999998763 33333 3566788889999999888888 899999999999
Q ss_pred cEEE--EccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 725 KTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 725 ~~~~--l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+.+. +..|...|++++|+ ...++++++.||.+.+|
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9884 56889999999998 44566667778876665
No 51
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.9e-35 Score=308.80 Aligned_cols=285 Identities=18% Similarity=0.216 Sum_probs=218.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC----eEEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV 547 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~----~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~V 547 (761)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 46799999999999999999999999999999999876 46777889999999999999 6999999999999999
Q ss_pred EecCCCC--------ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe--------------
Q 004327 548 WDTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-------------- 604 (761)
Q Consensus 548 WDl~t~~--------~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~~~~-------------- 604 (761)
||+.++. ..+..+..|...|.+++|+|+. ..++++++.|+.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 9998764 3467788899999999999982 3566688999999999999877554332
Q ss_pred cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEE
Q 004327 605 CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVW 674 (761)
Q Consensus 605 ~~~~i~~l~fspd---~~~Llags~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IW 674 (761)
....+.++.|+|+ +..+++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++++ |+.|++|
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899998 9999999
Q ss_pred ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE----cCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEE
Q 004327 675 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG----CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 675 dl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs----~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~La 749 (761)
|++.+.. ..........+....+.+....+..+. ....+.+|+....+.+ .+.+|...|++++|+|++++|+
T Consensus 246 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 246 KITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred eCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 9986532 222222222333333444443333333 2335556665555555 6778999999999999999999
Q ss_pred EEECCCeEEEcC
Q 004327 750 SASHDKCVKIWK 761 (761)
Q Consensus 750 Sgs~DG~I~IWd 761 (761)
+++.||.|+|||
T Consensus 323 s~~~dg~v~iw~ 334 (351)
T 3f3f_A 323 SAGDDGKVRLWK 334 (351)
T ss_dssp EEETTSCEEEEE
T ss_pred EecCCCcEEEEe
Confidence 999999999996
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.7e-35 Score=321.45 Aligned_cols=279 Identities=13% Similarity=0.103 Sum_probs=227.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------eEEEEEcCCCeE----------EEEeccCCcceEEEEEcCCCCEEEEEe--
Q 004327 480 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 540 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg-------~I~VWdl~t~~~----------~~~l~~h~~~V~~v~fspdg~~Lasgs-- 540 (761)
-+|+|++|+||+++||+|+.|. .|+||++..... ...+..|...|.+++|+ ++.+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998643 599999875421 23567888899998875 45666654
Q ss_pred ---------CCCeEEEEecCCCCceeEEe--------ecCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCeeeeE
Q 004327 541 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 602 (761)
Q Consensus 541 ---------~DG~I~VWDl~t~~~~i~~~--------~~h~~~V~sl~fsp~g~~ll-asgs~Dg~I~vWDl~t~~~~~~ 602 (761)
.|+.|++|++......+... ..+...+.+++|+|+|..++ ++++.|++|+|||+.+++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 47789999987655433322 23445689999999988764 4566899999999999999999
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 004327 603 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 675 (761)
Q Consensus 603 ~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IWd 675 (761)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99889999999999999888877 55667777777655443 445888999999999999999988 65 688899
Q ss_pred CCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE-ccCCCCeeEEEEeCCCCEEEEEE
Q 004327 676 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 676 l~s~~~-~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l-~~h~~~V~slafspdg~~LaSgs 752 (761)
+..... ......+..|...|.+++|+|++++|++++.|+.|+|||+.+++++ .+ .+|...|++++|+||+++||||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999988 44 68999999999999999999999
Q ss_pred CCCeEEEcC
Q 004327 753 HDKCVKIWK 761 (761)
Q Consensus 753 ~DG~I~IWd 761 (761)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.5e-34 Score=309.03 Aligned_cols=279 Identities=15% Similarity=0.234 Sum_probs=228.9
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEc
Q 004327 429 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl 508 (761)
...++++|+.|+.+++|....... .+........+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 346889999999999884322110 11123456778999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee---cCCCCeEEEEEcCCCC--------
Q 004327 509 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKE-------- 577 (761)
Q Consensus 509 ~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~---~h~~~V~sl~fsp~g~-------- 577 (761)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . ..... +|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999842 2 23332 6889999999999863
Q ss_pred -cEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEE
Q 004327 578 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 578 -~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl 654 (761)
.+|++++.|+.|++||.. ......+. +...+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 578899999999999954 55555554 556799999999999999999999999999954 33444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 655 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 655 ~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~-----------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+|+|++.+++++.|+.|++||+.+..... +..+. +|...|.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 004327 724 N 724 (761)
Q Consensus 724 ~ 724 (761)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.8e-34 Score=305.15 Aligned_cols=252 Identities=19% Similarity=0.287 Sum_probs=213.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC--CeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEE
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 547 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t--~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~V 547 (761)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4678899999999999999864 899999999999999
Q ss_pred EecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCee--eeEE-ecCCCeeEEEEecC-----
Q 004327 548 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 617 (761)
Q Consensus 548 WDl~t~~-~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~--~~~~-~~~~~i~~l~fspd----- 617 (761)
||++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2456778899999999999973 46778999999999999987632 2223 34567999999997
Q ss_pred --------CCEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEECCCCCC
Q 004327 618 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 618 --------~~~Llags~dg~I~IwDl~t~~----~i~~l~~h~~~I~sl~~spdg---~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
+.+|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+.+...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998764 667888999999999999985 7899999 99999999986432
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 682 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 682 ~~~i~~l--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
......+ ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1222233 45678899999999999999999999999999763
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.1e-34 Score=328.84 Aligned_cols=296 Identities=18% Similarity=0.215 Sum_probs=242.4
Q ss_pred CccccceecCCCceeEEEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCeEEEEEcCCCeEEEEe-c---cCCcceEE
Q 004327 455 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL-E---EHTQWITD 526 (761)
Q Consensus 455 d~~~r~~d~~~g~~~~~v~~l~~H~~---~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~~~~~l-~---~h~~~V~~ 526 (761)
+...++|+...+ ..+..+.+|.. .|++++|+|+ +++|++++.|+.|++||+.+++.+..+ . .|...|.+
T Consensus 182 d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 182 DGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp TTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred CCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 445566665544 45667889999 9999999999 999999999999999999999999999 6 89999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCCce--------------------------------------------eEEeec
Q 004327 527 VRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------------------------LRTFTG 562 (761)
Q Consensus 527 v~fspdg~~Lasgs~DG~I~VWDl~t~~~~--------------------------------------------i~~~~~ 562 (761)
++|+ ++.+|++++.|+.|++||+.++... +..+.+
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 9999 9999999999999999999864321 112233
Q ss_pred CCCCeEEEEEcCC--------------------------------CCcEEEEEeCCCcEEEEECC---------------
Q 004327 563 HSTTVMSLDFHPS--------------------------------KEDLLCSCDNNSEIRYWSIN--------------- 595 (761)
Q Consensus 563 h~~~V~sl~fsp~--------------------------------g~~llasgs~Dg~I~vWDl~--------------- 595 (761)
|...|.+++| |+ ....+++++.|+.|++||+.
T Consensus 338 ~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~ 416 (615)
T 1pgu_A 338 HNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN 416 (615)
T ss_dssp CSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECS
T ss_pred CCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcC
Confidence 4444444444 32 01233455556666666553
Q ss_pred -------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE-EEEcCCCCCEEEE
Q 004327 596 -------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR-LKLQGHKNQVHSV 654 (761)
Q Consensus 596 -------------------t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i-~~l~~h~~~I~sl 654 (761)
+++.+..+.....+.+++|+ +.++++++. |+.|++||+.+++.. ..+..|...|.++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 417 DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred CCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence 34444445556678888888 788999999 999999999988765 6677899999999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeC----------CCCEEEEEEcCCcEEEEECC
Q 004327 655 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP----------TFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 655 ~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-~~~~I~sl~fsp----------dg~~L~sgs~dg~I~IwDl~ 722 (761)
+|+|++++|++++ |+.|++||+.++ ..+..+.. |...|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 9999999999999 999999999887 67777777 899999999999 99999999999999999999
Q ss_pred CC-cEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 723 EN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 723 ~~-~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 572 ~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 572 RPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp CTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred CCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 87 444 6779999999999999999 99999999999996
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-34 Score=314.95 Aligned_cols=282 Identities=18% Similarity=0.333 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
+....+|...+.+.++++++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 334557776654433333345688888999999999999998877765 8899999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCC
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg 628 (761)
.++. .+..+.+|...|.+++|+ ..++++++.||.|++||++ ....+..+. +...+.+++|+|++.+|++++.|+
T Consensus 164 ~~~~-~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 164 ESQT-KLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TTCC-EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCe-EEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 9876 478888999999999995 3578899999999999998 455555554 556799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg-~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
.|++||+++++.+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|++
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHS 315 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCC
Confidence 99999999999999999999999999999976 5666654 899999999887 5555554 56789999999999
Q ss_pred CEEEEEE--cCCcEEEEECCCCcEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 705 PSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs--~dg~I~IwDl~~~~~~---~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+|++++ .|+.|++||+.++... .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999965 7999999999987655 4668999999999999999999999999999996
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-33 Score=300.50 Aligned_cols=268 Identities=24% Similarity=0.418 Sum_probs=235.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.|+.+++|.. .++ .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 36 ~~l~s~~~dg~i~iw~~----------------~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 36 EWLASSSADKLIKIWGA----------------YDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp SEEEEEETTSCEEEEET----------------TTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEeeCCCeEEEEeC----------------CCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 57788888888887732 222 23456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++++. .+..+..|...|.+++|+|++ .+|++++.|+.|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCR 174 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999866 477888999999999999986 4667899999999
Q ss_pred EEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE---EEEcCCCCEEEE
Q 004327 591 YWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYLAS 665 (761)
Q Consensus 591 vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~s---l~~spdg~~Las 665 (761)
+||+++++.+..+. ....+..++|+|++.+|++++.|+.|++||+++++.+..+.+|...+.+ ....+++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999988877664 3346889999999999999999999999999999999999888765432 233467889999
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCcEEEEECC
Q 004327 666 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 722 (761)
Q Consensus 666 gs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~ 722 (761)
++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 98 999999999887 67888899999999999999999999987 58999999864
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=340.85 Aligned_cols=300 Identities=8% Similarity=0.055 Sum_probs=232.8
Q ss_pred CCccccceecCCCc-eeEEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCeEEEEEcCCCeE-----------EE
Q 004327 454 RDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESFTV-----------KS 515 (761)
Q Consensus 454 ~d~~~r~~d~~~g~-~~~~v~~l~~H~~~V~~lafSpd------g~~Lasgs~Dg~I~VWdl~t~~~-----------~~ 515 (761)
.|..+++|+...+. .......+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.++.. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 44455566654443 22234456788999999999997 57999999999999999986532 24
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEE--EEcCCCCcEEEEEeCCCcEEEEE
Q 004327 516 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 516 ~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl--~fsp~g~~llasgs~Dg~I~vWD 593 (761)
++.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.++ +|++++..+|++|+.|++|+|||
T Consensus 261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 261 TLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp EECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred EEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 67889999999999986 4899999999999999997766667789999999999 46666557889999999999999
Q ss_pred CCCCeeeeEEecCC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC
Q 004327 594 INNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 669 (761)
Q Consensus 594 l~t~~~~~~~~~~~---~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg 669 (761)
+++++++..+..+. .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|++.+|++|+ |+
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 99887766655332 478999999999999999999999999999988888889999999999999999999999 99
Q ss_pred eEEEEECCCCCCceeEEEee-----cCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC--CCCcEEEEccCCCCeeEEEEe
Q 004327 670 LVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSLAAS 742 (761)
Q Consensus 670 ~I~IWdl~s~~~~~~i~~l~-----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~~~~~~~l~~h~~~V~slafs 742 (761)
+|++||+... .+.... .....+.+++|+|++..+ .. . +.+++|+. .......+.+|...|++++|+
T Consensus 420 tv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~-~-~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs 492 (524)
T 2j04_B 420 SLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RI-D-SSYEVYPLTVNDVSKAKIDAHGINITCTKWN 492 (524)
T ss_dssp EEECCBSCSS----TTTCC------CCCCEEEECBCCSSSCEE-EE-C-CCCCCCC-------------CCCSCCCEEEC
T ss_pred EEEEEechHh----hccccccCccceeeeEEEEeccCCCCCeE-Ec-c-CCceecccccCCcceeeecCCCceEEEEECC
Confidence 9999998653 111111 112257789999999844 22 2 23334433 333344788999999999999
Q ss_pred CCCC---EEEEEECCCeEEEcC
Q 004327 743 TVNG---MVASASHDKCVKIWK 761 (761)
Q Consensus 743 pdg~---~LaSgs~DG~I~IWd 761 (761)
|++. +||+|+.||.|+||+
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCccHHHHhhccCceEEEEE
Confidence 9964 999999999999995
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-34 Score=361.99 Aligned_cols=310 Identities=21% Similarity=0.389 Sum_probs=266.7
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++| +..++ ..+..+.+|.+.|++++|+|++++||+++.|+.|+|||+.+
T Consensus 628 ~~l~s~~~d~~i~vw----------------~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 628 QRIASCGADKTLQVF----------------KAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp SEEEEEETTSCEEEE----------------ETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCeEEEE----------------ECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 577888887777776 33333 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 511 FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.||.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESSSE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECCCe
Confidence 999999999999999999999 55689999999999999999876 4778889999999999999964 6679999999
Q ss_pred EEEEECCCCeeeeEEe--------------------------------------------------------cCCCeeEE
Q 004327 589 IRYWSINNGSCAGVFK--------------------------------------------------------CQSGATQM 612 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~--------------------------------------------------------~~~~i~~l 612 (761)
|++||+.++.....+. +...+.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999998765543321 23457889
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc---------
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------- 682 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~--------- 682 (761)
+|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+....
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999999 999999997531000
Q ss_pred -----------------eeEEE--------eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCe
Q 004327 683 -----------------ECIHE--------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 736 (761)
Q Consensus 683 -----------------~~i~~--------l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V 736 (761)
..+.. .......+.+++|+|++.++++++.+|.|++||+.+++.. .+.+|...|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 00000 1123457899999999999999999999999999998877 667899999
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 737 SSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 737 ~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++++|+|++++|++++.||.|++||
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999996
No 60
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-35 Score=330.81 Aligned_cols=280 Identities=19% Similarity=0.282 Sum_probs=222.9
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeEE--EEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 004327 474 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 549 (761)
Q Consensus 474 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~--~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWD 549 (761)
...+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3567889999999999 6779999999999999999876543 45568999999999998 688999999999999999
Q ss_pred cCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-EEEEE
Q 004327 550 TENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAA 624 (761)
Q Consensus 550 l~t~~~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~-~Llag 624 (761)
+++.. ...+. .+...+.+++|+|++ .+|++|+.||.|++||++... +..+. +...|.+++|+|++. .|+++
T Consensus 194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 194 FKGNI--LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp TTSCE--EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred ccCCc--eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEe
Confidence 98643 33332 234467899999996 567799999999999997544 44443 567799999999876 56778
Q ss_pred EcCCeEEEEECCCCeEEE---EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC------c
Q 004327 625 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K 694 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~---~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~------~ 694 (761)
+.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence 899999999998765332 3356999999999999999999999 999999999887 33444333321 2
Q ss_pred eEEEEEeCCCCEEEEEEc------------CCcEEEEECCCCcEE-EE-ccCCCCeeEE-EEeCCCCEEEEEECCCeEEE
Q 004327 695 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~-~l-~~h~~~V~sl-afspdg~~LaSgs~DG~I~I 759 (761)
+..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|++.+|++|+ |+.|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 345567777776666643 247999999999887 33 4788889887 6999999999876 889999
Q ss_pred cC
Q 004327 760 WK 761 (761)
Q Consensus 760 Wd 761 (761)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-33 Score=315.18 Aligned_cols=295 Identities=20% Similarity=0.368 Sum_probs=258.4
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|. ..++ ..+..+.+|.+.|++++|+ +.+|++|+.||+|++||+.+
T Consensus 130 ~~l~sg~~dg~i~vwd----------------~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWS----------------AVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp TEEEEEETTSCEEEEE----------------TTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCcEEEEE----------------CCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 5778888888887773 2233 3456788999999999998 56999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+.+|...|.++.|+ +.+|++|+.||+|++||+.++. .+..+.+|...|.+++| + ..++++++.|+.|+
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVK 262 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--C-SSCEEEEETTSCEE
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--C-CCEEEEEcCCCEEE
Confidence 99999999999999999995 5689999999999999999866 47788899999999999 3 35677899999999
Q ss_pred EEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 004327 591 YWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 668 (761)
Q Consensus 591 vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D 668 (761)
+||+++++++..+. +...+.++.| ++.++++++.|+.|++||+++++.+..+.+|...+.++.++ +.+|++++ |
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 338 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence 99999999988887 4466888888 77899999999999999999999999999999999988874 66888888 9
Q ss_pred CeEEEEECCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EE-----ccCCCCeeEE
Q 004327 669 ELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSL 739 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~---~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l-----~~h~~~V~sl 739 (761)
+.|++||+.++ .++..+.. |...|.+++|+ +.+|++++.||.|++||+.+++.+ .+ ..|.+.|+++
T Consensus 339 g~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 339 STVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp SCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred CeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 99999999887 56666665 77889999995 578999999999999999999887 34 3788999999
Q ss_pred EEeCCCCEEEEEECCCe----EEEcC
Q 004327 740 AASTVNGMVASASHDKC----VKIWK 761 (761)
Q Consensus 740 afspdg~~LaSgs~DG~----I~IWd 761 (761)
+|+|++.+|++|+.||. |.|||
T Consensus 414 ~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 414 RASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EecCCEEEEEEcccCCCCccEEEEEE
Confidence 99999999999999998 99986
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.9e-34 Score=328.97 Aligned_cols=279 Identities=19% Similarity=0.325 Sum_probs=247.9
Q ss_pred EEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCeEEEEEcCCC--------eEEEEeccCCcceEEEEEcCCCCEEEEE
Q 004327 471 EFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATS 539 (761)
Q Consensus 471 ~v~~l~~H~~~-V~~lafSp--dg~~Lasgs~Dg~I~VWdl~t~--------~~~~~l~~h~~~V~~v~fspdg~~Lasg 539 (761)
.+..+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +....+..|...|.+++|+|++++|+++
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence 45678999999 99999999 9999999999999999999754 6778888999999999999999999999
Q ss_pred eCC----CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-C---CeeE
Q 004327 540 SAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S---GATQ 611 (761)
Q Consensus 540 s~D----G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~---~i~~ 611 (761)
+.+ +.|++||.. . .+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++.+..+..+ . .+.+
T Consensus 135 ~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 211 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211 (615)
T ss_dssp ECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred ccCCCCccEEEEEECC--C-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence 988 789999832 3 578889999999999999998878889999999999999999998888744 4 6999
Q ss_pred EEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEE-c---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004327 612 MRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 612 l~fspd-~~~Llags~dg~I~IwDl~t~~~i~~l-~---~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i 685 (761)
++|+|+ +.+|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++ |+.|++||+.++ .++
T Consensus 212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~ 287 (615)
T 1pgu_A 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCV 287 (615)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEE
Confidence 999999 999999999999999999999999998 6 899999999999 999999999 999999999876 666
Q ss_pred EEeecC----CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 686 HELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 686 ~~l~~~----~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+.+|...|++++| |+ |++++.||.|++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred EEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 666655 3567888886 8899999999999999999987776 67788888998888 77 7777778888777
Q ss_pred C
Q 004327 761 K 761 (761)
Q Consensus 761 d 761 (761)
|
T Consensus 363 ~ 363 (615)
T 1pgu_A 363 S 363 (615)
T ss_dssp T
T ss_pred E
Confidence 5
No 63
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=312.56 Aligned_cols=242 Identities=24% Similarity=0.383 Sum_probs=214.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
+...|++++|+|||++||+|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.++.. .
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~ 200 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-S 200 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-E
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-E
Confidence 444599999999999999999999999999999999999999999999999999999999999999999999998653 4
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--------cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 558 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 558 ~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--------~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
..+. +...|.+++|+|....+|++|+.|+.|++||++++..+..+. +...|.+++|+|++.+|++++.|+.
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 4443 667899999999556788899999999999999988877652 3457999999999999999999999
Q ss_pred EEEEECCCC------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004327 630 ISILDVETQ------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 696 (761)
Q Consensus 630 I~IwDl~t~------------~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~ 696 (761)
|++||+++. .+...+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+.+|...|.
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVI 356 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEE
Confidence 999999753 35667888999999999999999999999 999999999887 67788889999999
Q ss_pred EEEEeC------CCCEEEEEEcCCcEEEEECCCC
Q 004327 697 SCVFHP------TFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 697 sl~fsp------dg~~L~sgs~dg~I~IwDl~~~ 724 (761)
+++|++ ++.+|++++.|+.|+||++...
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999986 6789999999999999997643
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.2e-34 Score=340.47 Aligned_cols=308 Identities=20% Similarity=0.296 Sum_probs=266.8
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.++.+.+| +..++ ..+..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+
T Consensus 26 ~~la~~~~~g~v~iw----------------d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIW----------------NYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp SEEEEEETTSEEEEE----------------ETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCEEEEE----------------ECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 577888777777766 33333 34567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
++.+..+.+|...|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|.+..++++++.||.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999876667888999999999999995457888999999999
Q ss_pred EEECCCCeeeeEEecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 591 YWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 591 vWDl~t~~~~~~~~~~--~~i~~l~fsp--d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
+||+.++.....+... ..+.+++|+| ++.++++++.||.|++||+++++.+..+.+|...|.+++|+|++.+|+++
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 9999988777666543 6799999999 99999999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCcEEEEECCCCcE----------EE------
Q 004327 667 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENKT----------LT------ 728 (761)
Q Consensus 667 s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~~~~~----------~~------ 728 (761)
+ |+.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+|++..... +.
T Consensus 247 ~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 247 SEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp ETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred eCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 9 999999999887 677888888899999999999874 36666677888998754321 11
Q ss_pred ----------------------------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 729 ----------------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 729 ----------------------------l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+..+...+.+++|+|++++|++++ ||.+.||+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 123445688999999999999888 89999985
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=321.75 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=230.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-----------EEEEeccCC------------cceEEEEEcCCC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 533 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-----------~~~~l~~h~------------~~V~~v~fspdg 533 (761)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367889999999999999999999999999998876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEecCCCCce--------------------------------------e-EEeecCCCCeEEEEE
Q 004327 534 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 572 (761)
Q Consensus 534 --~~Lasgs~DG~I~VWDl~t~~~~--------------------------------------i-~~~~~h~~~V~sl~f 572 (761)
.+|++++.|++|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 1 123679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-CeeeeEE--------ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 004327 573 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 640 (761)
Q Consensus 573 sp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~--------~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~-- 640 (761)
+|++. +|++| .|+.|++||+++ +..+..+ .+...+.+++|+|++ ..|++++.||.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99865 55577 699999999994 4454433 245679999999998 8999999999999999999876
Q ss_pred --EEEEcCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEECCC-CCCceeEEEeecCCCc-----------
Q 004327 641 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 694 (761)
Q Consensus 641 --i~~l~~h~~------------~I~sl~~spdg~~LasgsDg~I~IWdl~s-~~~~~~i~~l~~~~~~----------- 694 (761)
+..+..|.. .|.+++|+|++.+|++++++.|++||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 678888876 89999999999999999899999999986 4 444455555321
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccC---------------------------------CCCee
Q 004327 695 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 737 (761)
Q Consensus 695 ----I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h---------------------------------~~~V~ 737 (761)
+..++|+|++.+|++++.|+.|+|||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765543 35689
Q ss_pred EEEEeCCCCEEEEEECCCeEEEc
Q 004327 738 SLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 738 slafspdg~~LaSgs~DG~I~IW 760 (761)
+++|+|++.+||+++.|+ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 5565
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=311.45 Aligned_cols=299 Identities=19% Similarity=0.345 Sum_probs=242.1
Q ss_pred ccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeEEEEe-------------ccCCcc
Q 004327 458 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQW 523 (761)
Q Consensus 458 ~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~~~l-------------~~h~~~ 523 (761)
.++|+...+. ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+ .+|...
T Consensus 25 ~~v~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 25 RRVLGLELNK---DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHTEEECT---TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred ceeeccccCc---ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3445444332 3456788999999999999 9999999999999999999887654333 259999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCeee
Q 004327 524 ITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCA 600 (761)
Q Consensus 524 V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~--~llasgs~Dg~I~vWDl~t~~~~ 600 (761)
|.+++|+| ++.+|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 99999999 778999999999999999998653 44444 788899999998643 37889999999999999999888
Q ss_pred eEEe-cCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCe-EEEEE---------------cCCCCCEEEEEEcCCCCE
Q 004327 601 GVFK-CQSGATQMRFQPRLGR-ILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEY 662 (761)
Q Consensus 601 ~~~~-~~~~i~~l~fspd~~~-Llags~dg~I~IwDl~t~~-~i~~l---------------~~h~~~I~sl~~spdg~~ 662 (761)
..+. +...+.+++|+|++.+ +++++.||.|++||++++. ++..+ ..|...|.+++|+|++.+
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 8777 4567999999999884 8899999999999998764 44444 468889999999999999
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeE
Q 004327 663 LASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 738 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~~~~~~i~~l--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~s 738 (761)
|++++ |+.|++||+.++......... ......+...........+++++.++.|++||+.+++.+ .+.+|...|++
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~ 339 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC 339 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE
Confidence 99999 999999999887432211110 111122222233344566888899999999999999888 77789999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEcC
Q 004327 739 LAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 739 lafspdg~~LaSgs~DG~I~IWd 761 (761)
++|+|++.+|++++.||.|+|||
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEe
Confidence 99999999999999999999996
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-33 Score=312.21 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=233.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe--ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l--~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+++|+||++ ++||+|. |++|+|||+.+++....+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 667999976 4888776 899999999999887665 4678889999999999999999999999999999876 4888
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
+.+|...|.+++|+ ..++++|+.|+.+++||..... .+..+. +...+..+.|+|++.++++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 99999999999987 3588899999999999998643 344444 456789999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 638 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 638 ~~----~i~~l~~h~~~I~sl~~spdg~-~Lasg--s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
++ .+.....|...|.+++|+|++. +++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 3566778999999999999764 55543 3 899999999987 66666654 467889999999999988
Q ss_pred EE--cCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 710 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+||+.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
No 68
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=305.61 Aligned_cols=273 Identities=23% Similarity=0.409 Sum_probs=213.7
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l-~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
++++|+.|+.+++|... .+ .+..+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~----------------~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVK----------------YD-DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECS----------------SS-CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEec----------------CC-CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 77888888888888321 11 11233444 34 99999999999999999999999999999985
Q ss_pred -------CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC---ceeEEeecCCCCeEEEEEcCCCCcE
Q 004327 510 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 510 -------t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~---~~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++ .+
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-AL 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CE
Confidence 345677889999999999999999999999999999999995332 3467788999999999999996 56
Q ss_pred EEEEeCCCcEEEEECCCC--eeeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEcC
Q 004327 580 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 646 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t~--~~~~~~~-~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~--------~~i~~l~~ 646 (761)
|++|+.|+.|++||+.++ +++..+. +...|.+++|+|+ +..|++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 668999999999999998754 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCcEEEEEC
Q 004327 647 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 647 -h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~-~I~sl~fsp--dg~~L~sgs~dg~I~IwDl 721 (761)
|...|.+++|++++ +|++++ |+.|++||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999776 666676 99999999876521112233356766 899999999 6889999999999999998
Q ss_pred CC
Q 004327 722 TE 723 (761)
Q Consensus 722 ~~ 723 (761)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-34 Score=319.57 Aligned_cols=272 Identities=19% Similarity=0.346 Sum_probs=232.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+++|. ...+ .....+..|...|.+++|+|++++||+|+.|+.|+|||+.+
T Consensus 79 ~~l~s~s~D~~v~iWd----------------~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWN----------------ALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp SCEEEEETTSEEEEEE----------------TTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred CEEEEEeCCCeEEEEE----------------CCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 5788899888888772 2222 34567889999999999999999999999999999999865
Q ss_pred Ce-------EEEEeccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcCCCC
Q 004327 511 FT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 511 ~~-------~~~~l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~~i~~~-----~~h~~~V~sl~fsp~g~ 577 (761)
.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.+++|++.+.
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCC
Confidence 32 34567899999999999996 45799999999999999998764 4444 67899999999998667
Q ss_pred cEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------
Q 004327 578 DLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------ 649 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~-t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~------ 649 (761)
.+|++|+.|+.|++||++ .+..+..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+..
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL 298 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence 888899999999999998 456666665 456799999999999999999999999999999998888765432
Q ss_pred -CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 650 -QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 650 -~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
.|++++|+|+|.+|++++ |+.|++||+.++ ..+..+ ..|...|.+++|+|++.+|++++.|+.|+||++..
T Consensus 299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 489999999999999999 999999999876 445444 57889999999999999999999999999999976
Q ss_pred Cc
Q 004327 724 NK 725 (761)
Q Consensus 724 ~~ 725 (761)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-33 Score=356.53 Aligned_cols=285 Identities=21% Similarity=0.357 Sum_probs=259.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
..+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||+|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 630 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I 630 (761)
+. .+..+.+|...|.+++|+|++ ..++++|+.|+.|++||+++++++..+. +...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478889999999999999963 4678899999999999999999888776 45679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceE
Q 004327 631 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFH 696 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~-------------h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l-~~~~~~I~ 696 (761)
++||++++.....+.. +...+.+++|+|+|.++++++++.+.+||+.++ ..+..+ ..|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766542 233688999999999999999999999999887 444444 37889999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 697 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 697 sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 7789999999999999999999999999999996
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.9e-35 Score=321.74 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=234.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
.+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3558999999999999999999999999988777666666 455666789999999999999999999998755 46677
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 639 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~ 639 (761)
.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+. +...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999964 67799999999999999998888887 55679999999999999999999999999999999
Q ss_pred EEEEEcC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCC
Q 004327 640 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 693 (761)
Q Consensus 640 ~i~~l~~---h~~~I~sl~---------------------~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l-~~~~~ 693 (761)
.+..+.. |...|.+++ |+|++.+|++++ |+.|++||++++ ..+..+ ..+..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555555 578899999999 999999999876 344443 45778
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCcEEEEECCCCcE-E-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 694 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT-L-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 694 ~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~~~-~-~l~~-h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.|.+++|+|++. +|++++.|+.|++||+.+++. + .+.. |...|+++.| +++.+|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999998 999999999999999998754 2 5555 6778888865 5788999999999999996
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.8e-34 Score=341.57 Aligned_cols=285 Identities=17% Similarity=0.307 Sum_probs=254.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-cCCCeeEEEEec-CCCEEEEEEcC
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE 627 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~-~~~~i~~l~fsp-d~~~Llags~d 627 (761)
.++.. +..+.+|...|++++|+|++. +|++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.|
T Consensus 85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCcE-EEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 98764 778889999999999999975 5668999999999999886 5555555 456799999999 78899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004327 628 NYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~-~~I~sl~~sp--dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd 703 (761)
|.|++||+.++.....+..+. ..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC
Confidence 999999999887777666554 8899999999 999999999 999999999876 778888889999999999999
Q ss_pred CCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEEEcC
Q 004327 704 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 761 (761)
Q Consensus 704 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~--~LaSgs~DG~I~IWd 761 (761)
+.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++. ++++++ |+.+.+|+
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 999999999999999999998877 7778889999999999987 455555 55566663
No 73
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=294.71 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe--ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l--~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+.+|+||+++ +||+|. |++|+|||+++++.+..+ .+|...|++++|+|++++|++|+.||+|++||+++++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 999999999999988766 4678889999999999999999999999999999876 4788
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~-~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++.++++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998887763 5788999999999999987543 33333 456789999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 638 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 638 ~~----~i~~l~~h~~~I~sl~~spdg~~L-a--sgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
++ .......|...|.+++++|++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345566688899999999977533 3 333 789999999875 333 33446778999999999999888
Q ss_pred EE--cCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 710 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 710 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++.+||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
No 74
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-32 Score=292.97 Aligned_cols=277 Identities=16% Similarity=0.253 Sum_probs=239.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.|++|..... ..........+.+|...|++++|+|++++|++++.|+.|++|+...
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~--------------~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~ 117 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRD--------------ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT 117 (340)
T ss_dssp TEEEEEETTSCEEEEEECCS--------------SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCC--------------CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc
Confidence 58889999998888832211 1122345677899999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~-~llasgs~Dg~I 589 (761)
.........+...+..+.+++++.+|++++.|+.+++||+.........+.+|...|.+++|++++. .++++++.|+.|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i 197 (340)
T 4aow_A 118 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197 (340)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEE
Confidence 9999888889999999999999999999999999999999876655666778999999999998753 467889999999
Q ss_pred EEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Q 004327 590 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD 668 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsD 668 (761)
++||+++++++..+. +...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.|
T Consensus 198 ~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEET
T ss_pred EEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccCC
Confidence 999999999888776 456799999999999999999999999999999999988874 468999999999988887779
Q ss_pred CeEEEEECCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 669 ELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~---------l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
+.|++||+++. ..+.. ...|...|.+++|+|++++|++++.|+.|+|||+.+|+
T Consensus 277 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999875 33333 34577899999999999999999999999999998875
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-33 Score=314.34 Aligned_cols=271 Identities=22% Similarity=0.401 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 4445678888999987 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-cCCCeeEEEEecCCCEEEEEEcC
Q 004327 552 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 552 t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~---~~~~-~~~~i~~l~fspd~~~Llags~d 627 (761)
++. .+..+.+|...|.+++|++ .++++|+.||.|++||+.++... ..+. +...+.++.| +++++++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 4788889999999999974 47889999999999999987655 2332 4556888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
|.|++||+++++.+..+.+|...|.++.| ++.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 99999999999999999999999999999 467899888 999999999887 788888999999999999 7889
Q ss_pred EEEEEcCCcEEEEECCCCc---------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 707 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~~---------~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|++++.||.|++||+.++. .+ .+.+|.+.|++++| ++.+|++++.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 44 77899999999999 688999999999999997
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-33 Score=303.25 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=205.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 004327 474 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 549 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VWD 549 (761)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|...|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 457899999999999999999999999999999998775 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEe-cCCCeeEEEEecC------
Q 004327 550 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPR------ 617 (761)
Q Consensus 550 l~t~~-~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~---~~~~-~~~~i~~l~fspd------ 617 (761)
++++. .....+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... ..+. +...+.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 2456778899999999999983 467889999999999999875322 2222 3456888999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEECCC
Q 004327 618 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 618 -----------~~~Llags~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IWdl~s 678 (761)
+.+|++++.|+.|++||++.. +++..+.+|...|.+++|+|++ .+|++++ |++|++|++.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999865 5677888999999999999986 7899999 99999999976
Q ss_pred CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 679 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 679 ~~~~-~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
.... .....+..+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1222345678899999999999999999999999999975
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-32 Score=305.91 Aligned_cols=272 Identities=25% Similarity=0.471 Sum_probs=241.9
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 471 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 471 ~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
....+.+|.+.| +| +++++++|++|+.||.|++||+.+++.+..+.+|...|++++|+ +.+|++|+.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345688999876 55 44568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCC
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg 628 (761)
+.++. .+..+.+|...|.+++|++ ..+++|+.||.|++||+.+++++..+. +...+.++.| ++..+++++.||
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99875 4788889999999999973 467799999999999999999888776 4456888888 678999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 629 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 629 ~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
.|++||+++++++..+.+|...|.+++| ++.++++++ |+.|++||+.++ .++..+..|...+.++.++ +.++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999998 999999999887 6788888888888888774 5689
Q ss_pred EEEEcCCcEEEEECCCCcEE-EEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 708 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~~~~-~l~~---h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++++.|+.|++||+.+++.+ .+.. |...|++++|+ +.+|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 5544 88999999995 67999999999999996
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.5e-33 Score=304.94 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=238.2
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCeE
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 503 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpd----g---~~Lasgs~Dg~I 503 (761)
.++++|+.|+.+++|....... ...+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 5788888888888884322211 0112345567799999999999999 9 999999999999
Q ss_pred EEEEcCCCeE-----EEEeccC-----CcceEEEEEc----CCCCE-EEEEeCCCeEEEEecCC------CCceeE----
Q 004327 504 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 558 (761)
Q Consensus 504 ~VWdl~t~~~-----~~~l~~h-----~~~V~~v~fs----pdg~~-Lasgs~DG~I~VWDl~t------~~~~i~---- 558 (761)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999998876 8888888 5899999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEE
Q 004327 559 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 623 (761)
Q Consensus 559 -~~-------~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-------~~~i~~l~fspd~~~Lla 623 (761)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 55 4488999999999997 788999999999999999999988886 678999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004327 624 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 624 gs~d---g~I~IwDl~t~~~i~~l~~-------------h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~ 686 (761)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|++||+.++ .++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999887 6777
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCcEEEEECCCCc
Q 004327 687 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 687 ~l~------~~---------------~~~I~sl~fspdg----------~~L~sgs~dg~I~IwDl~~~~ 725 (761)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 777 67 8999999999998 799999999999999998763
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.4e-33 Score=294.20 Aligned_cols=247 Identities=19% Similarity=0.359 Sum_probs=210.3
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 004327 515 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 515 ~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~-~~~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vW 592 (761)
..+.+|...|++++|+|++++||+|+.|++|+|||+... ...+..+.+|.+.|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999753 2357889999999999999864 34688899999999999
Q ss_pred ECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCC------
Q 004327 593 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 659 (761)
Q Consensus 593 Dl~t~~--~~~~~~-~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~~spd------ 659 (761)
|++++. .+..+. +...|.+++|+|+ +.+|++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCcEEEEECCCCc--
Q 004327 660 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 725 (761)
Q Consensus 660 -------g~~Lasgs-Dg~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~~~~-- 725 (761)
+.+|++++ |+.|++||++++.. ......+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987532 22566788999999999999995 789999999999999997743
Q ss_pred --EEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 --~~~l--~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
...+ ..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1223 46888999999999999999999999999995
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-32 Score=323.95 Aligned_cols=275 Identities=16% Similarity=0.265 Sum_probs=231.9
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
..++++|+.|+.+++|...... .........+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDD--------------KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCST--------------TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCC--------------cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3578899999988888432211 01113456788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE---eecCCCCeEEEEEcCCCC-cEEEEEeC
Q 004327 510 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 585 (761)
Q Consensus 510 t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~---~~~h~~~V~sl~fsp~g~-~llasgs~ 585 (761)
++..+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++|+.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999865321 222 246888999999999863 57889999
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 586 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 586 Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~La 664 (761)
|+.|++||++++++...+. +...|.+++|+|++.+|++++.||.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999999998888776 45679999999999999999999999999999999888776 456899999999999999
Q ss_pred EEeCCeEEEEECCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 665 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 665 sgsDg~I~IWdl~s~~~~~~i~~l~~~-------------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
++.|+.|+|||+.++ .++..+..+ ...+.+++|+|++.+|++++.||.|+|||+..
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 988989999999886 444443321 12378899999999999999999999999853
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=336.08 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=222.2
Q ss_pred EecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCCCeEEEEeccC------------------CcceEEEEEcCCCC
Q 004327 474 LIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLS 534 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h------------------~~~V~~v~fspdg~ 534 (761)
.+.+|.+.|++++|+|+ +.+|++|+.|+.| |||+.+++.+..+..| ...|++++|+|++.
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 35789999999999995 5789999999999 9999999998888765 57799999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeE-Ee---ec-------------CCCCeEEEEEcC----CCCcEEEEEeCC-----Cc
Q 004327 535 RLATSSADRTVRVWDTENPDYSLR-TF---TG-------------HSTTVMSLDFHP----SKEDLLCSCDNN-----SE 588 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~-~~---~~-------------h~~~V~sl~fsp----~g~~llasgs~D-----g~ 588 (761)
+|++++.||+|++||+.+++.... .+ .. |...|++++|++ ++..++++|+.| ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 999999999999999988664221 12 11 345789999953 333556666433 14
Q ss_pred EEEEE-----------------------------------------------------------------------CCCC
Q 004327 589 IRYWS-----------------------------------------------------------------------INNG 597 (761)
Q Consensus 589 I~vWD-----------------------------------------------------------------------l~t~ 597 (761)
|++|+ +.++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 44444 3333
Q ss_pred eeeeE-------Ee-cCCCee----------------------------------EEEEecCCCEEEEEEcCCeEEEEEC
Q 004327 598 SCAGV-------FK-CQSGAT----------------------------------QMRFQPRLGRILAAAIENYISILDV 635 (761)
Q Consensus 598 ~~~~~-------~~-~~~~i~----------------------------------~l~fspd~~~Llags~dg~I~IwDl 635 (761)
..... +. ++..++ .++|+|+++.|++++.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 21110 00 001122 3455788899999999999999999
Q ss_pred CCCeEE----EE--Ec-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC----------------------
Q 004327 636 ETQVCR----LK--LQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------------------- 681 (761)
Q Consensus 636 ~t~~~i----~~--l~-----~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~---------------------- 681 (761)
.++... .. +. +|...|.+|+|+||+++|++++ |++|+|||+.++..
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 876321 11 12 7889999999999999999999 99999999976521
Q ss_pred --------------------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE------E-ccCCC
Q 004327 682 --------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDK 734 (761)
Q Consensus 682 --------------------~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~------l-~~h~~ 734 (761)
..++..+..|...|++++|+|+| +|++++.|++|+|||+++...+. + .+|.+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~ 623 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA 623 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence 13467788899999999999999 99999999999999998887652 2 27899
Q ss_pred CeeEEEEe-----CCC---CEEEEEECCCeEEEcC
Q 004327 735 LVSSLAAS-----TVN---GMVASASHDKCVKIWK 761 (761)
Q Consensus 735 ~V~slafs-----pdg---~~LaSgs~DG~I~IWd 761 (761)
.|++++|+ ||| .+|++|+.||+|++||
T Consensus 624 ~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 624 CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 99999999 886 7999999999999996
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=298.29 Aligned_cols=249 Identities=16% Similarity=0.279 Sum_probs=216.3
Q ss_pred CCCCCeEEEEEcCC---CCEEEEEECCCeEEEEEcCCCe-EEEEeccCCcceEEEEE------cCCCCEEEEEeCCCeEE
Q 004327 477 ASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVR 546 (761)
Q Consensus 477 ~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWdl~t~~-~~~~l~~h~~~V~~v~f------spdg~~Lasgs~DG~I~ 546 (761)
+|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 78999999999998 6999999999999999999988 88899999999999955 67899999999999999
Q ss_pred EEecCCCCceeEEeecCCC----CeEEEE----EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec--
Q 004327 547 VWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-- 616 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~----~V~sl~----fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fsp-- 616 (761)
+||+.++...+..+..|.+ .|.+++ |+|++ .++++++.|+.|++||+++++......+...+.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999987756777766654 799998 56775 567788999999999999999888888888999999999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCeEEEE-----EcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCCc------
Q 004327 617 -RLGRILAAAIENYISILDVETQVCRLK-----LQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG------ 682 (761)
Q Consensus 617 -d~~~Llags~dg~I~IwDl~t~~~i~~-----l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~------ 682 (761)
++.++++++.||.|++||+++++.+.. +.+|...|++++|+|++. +|++++ |+.|++||++.+...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 899999999999999999987654433 348999999999999998 788888 999999999865433
Q ss_pred ----------eeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCcEEEEECCCCcE
Q 004327 683 ----------ECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKT 726 (761)
Q Consensus 683 ----------~~i~~l~~~~~~I~sl~fspdg~~L~-sgs~dg~I~IwDl~~~~~ 726 (761)
.++..+..|...|.+++|+|++.+|+ +++.|+.|+|||+.+...
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778888999999999999999998 799999999999987653
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=297.47 Aligned_cols=253 Identities=21% Similarity=0.304 Sum_probs=217.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC--CCeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVR 546 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~--t~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~ 546 (761)
.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345688999999999999999999999999999999998 66777889999999999999987 89999999999999
Q ss_pred EEecCCCCc-eeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeee---EEecCCCeeEEEEec-----
Q 004327 547 VWDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP----- 616 (761)
Q Consensus 547 VWDl~t~~~-~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~~---~~~~~~~i~~l~fsp----- 616 (761)
+||+.++.. .+..+..|...|.+++|+|+. ..+|++++.|+.|++||++.+.... ...+...+.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999998652 466778899999999999983 3567789999999999999874332 223566799999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEECCCCC
Q 004327 617 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 680 (761)
Q Consensus 617 --------d~~~Llags~dg~I~IwDl~t~----~~i~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IWdl~s~~ 680 (761)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999865 355678889999999999999 89999999 9999999998864
Q ss_pred CceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 681 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 681 ~~~~i~~l--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
.......+ ..+...|.+++|+|++.+|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 32233333 33778899999999999999999999999999874
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=286.38 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=236.9
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.|+.+.+|. ..++ ..+..+.+|.+.|++++|+|++++|++++.||.|++||+.+
T Consensus 45 ~~l~~~~~dg~i~vwd----------------~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWY----------------SLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CEEEEEESSSCEEEEE----------------TTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEe----------------CCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 5778888888777772 2222 34567889999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCCc----------eeEEeecCCC--CeEEEEEc
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFH 573 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~~----------~i~~~~~h~~--~V~sl~fs 573 (761)
++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... .+..+..|.. .+.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 99998887 88899999999999999999999 9999999986542 3445556666 89999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCC-CeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE
Q 004327 574 PSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 651 (761)
Q Consensus 574 p~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I 651 (761)
|++. ++++++.||.|++||+++ ...+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+
T Consensus 185 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 185 TKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL 262 (369)
T ss_dssp GGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence 9865 566888999999999998 67777776 45679999999999999999999999999999999988887 78899
Q ss_pred EEEEEcCCCCEEEEEe-CC--------------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 652 HSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 652 ~sl~~spdg~~Lasgs-Dg--------------~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
.+++|+|++.++++++ ++ .+++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999988 66 8999999887 6778888899999999999999999999999999
Q ss_pred EEEECCCCc
Q 004327 717 ELWNMTENK 725 (761)
Q Consensus 717 ~IwDl~~~~ 725 (761)
+||++..+.
T Consensus 340 ~iw~~~~~~ 348 (369)
T 3zwl_B 340 RLHHFEKSY 348 (369)
T ss_dssp EEEEECHHH
T ss_pred EEEECcccc
Confidence 999997654
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-32 Score=296.42 Aligned_cols=259 Identities=17% Similarity=0.250 Sum_probs=220.2
Q ss_pred ceecCCCceeEEEEEec--CCCCCeEEEEEcCC----CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcC-C
Q 004327 460 SAEVGKGFTFTEFQLIP--ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-S 532 (761)
Q Consensus 460 ~~d~~~g~~~~~v~~l~--~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fsp-d 532 (761)
+|+..++.....+..+. .|...|++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| +
T Consensus 48 vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 127 (366)
T 3k26_A 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD 127 (366)
T ss_dssp EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSC
T ss_pred EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCC
Confidence 33444444444444333 48899999999998 67999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----
Q 004327 533 LSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 604 (761)
Q Consensus 533 g~~Lasgs~DG~I~VWDl~t~~~~i~~~---~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----- 604 (761)
+.+|++++.||.|++||+.++.. +..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.
T Consensus 128 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 128 PNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp TTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 99999999999999999998653 5555 6899999999999986 466688899999999999876543332
Q ss_pred ------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------eEEEEEcC
Q 004327 605 ------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRLKLQG 646 (761)
Q Consensus 605 ------------------------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~--------------~~i~~l~~ 646 (761)
+...+.+++|+ ++++++++.|+.|++||+++. ..+..+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 283 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc
Confidence 55679999999 679999999999999999876 34788888
Q ss_pred CCCCEEEEEEcCC--CCEEEEEe-CCeEEEEECCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 647 HKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 647 h~~~I~sl~~spd--g~~Lasgs-Dg~I~IWdl~s~~~~~-~i~~l~~~--~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
|...|.+++|+|+ +.+|++++ |+.|++||+.++.... .+..+..| ...|.+++|+|++.+|++++.|+.|+|||
T Consensus 284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 9999999999999 99999999 9999999999875433 45566666 78999999999999999999999999999
Q ss_pred CC
Q 004327 721 MT 722 (761)
Q Consensus 721 l~ 722 (761)
+.
T Consensus 364 ~~ 365 (366)
T 3k26_A 364 RL 365 (366)
T ss_dssp C-
T ss_pred ec
Confidence 85
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-32 Score=294.45 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=231.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.++.+.+| +...+ .+..+..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 21 ~~l~~~~~d~~v~i~----------------~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 21 TQIAICPNNHEVHIY----------------EKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SEEEEECSSSEEEEE----------------EEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred CEEEEEeCCCEEEEE----------------eCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 577777777777766 33222 2446778889999999999999999999999999999999998
Q ss_pred CeEEEE--eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 004327 511 FTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 585 (761)
Q Consensus 511 ~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~---~i~~~~~h~~~V~sl~fsp~g~~llasgs~ 585 (761)
++.... +..|...|.+++|+|++++|++++.|+.|++||++.... .......|...|.+++|+|++ .+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcC
Confidence 875544 467999999999999999999999999999999987663 233446789999999999986 56668899
Q ss_pred CCcEEEEECC------------------CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004327 586 NSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 586 Dg~I~vWDl~------------------t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~ 646 (761)
|+.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999954 567777664 456799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCC--CC-----------------------------CceeE------EEe-
Q 004327 647 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HEL- 688 (761)
Q Consensus 647 h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s--~~-----------------------------~~~~i------~~l- 688 (761)
|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 99999999999999999988899999999987 31 00110 222
Q ss_pred ecCCCceEEEEEe-CCC---CEEEEEEcCCcEEEEECCCCc
Q 004327 689 SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 689 ~~~~~~I~sl~fs-pdg---~~L~sgs~dg~I~IwDl~~~~ 725 (761)
.+|...|.+++|+ +++ .+|++++.||.|++||+.+++
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 3788999999866 666 899999999999999986643
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-32 Score=304.97 Aligned_cols=278 Identities=15% Similarity=0.241 Sum_probs=235.5
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEEcCCCe----EEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCC
Q 004327 481 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 481 ~V~~lafSpdg~~L-asgs~Dg~I~VWdl~t~~----~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
....++++|+...+ ++++.||.|+||++.... .+..+.+|...|++++|+| ++.+|++|+.||+|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34568899876544 457889999999996542 3445778999999999999 89999999999999999998864
Q ss_pred ------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--e-cCCCeeEEEEecCCCEEEEEE
Q 004327 555 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 555 ------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~--~-~~~~i~~l~fspd~~~Llags 625 (761)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . +...+.+++|+|++.+|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3477889999999999999998788889999999999999999998888 3 556799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-cCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 626 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l-~~h~~~-I~sl~~spdg~~Lasg---s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++.........+ .+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEE
Confidence 9999999999999999988 678776 8999999999999998 5 899999999886542223322 4567799999
Q ss_pred EeCCCCEEEEEE-cCCcEEEEECCCCc--EEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 700 FHPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 700 fspdg~~L~sgs-~dg~I~IwDl~~~~--~~~l~--~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997666 69999999999887 33333 36699999999999988774 577999995
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=296.83 Aligned_cols=246 Identities=18% Similarity=0.274 Sum_probs=216.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 556 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~ 556 (761)
.|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++.....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 38999999999999999999999999999999999999999999999999999 5679999999999999999976667
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE---cCCeEEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISI 632 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags---~dg~I~I 632 (761)
+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++.+..+. +...+.+++|+|++..+++.+ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 88899999999999999985 567799999999999999988887775 556799999999876665544 5999999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE--e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 633 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 633 wDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg--s-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
||+++++.+..+. +...|.+++|+|++.+|+++ + |+.|++||+.++.. .....+..|...|.+++|+|++.+|++
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 9999999988886 67789999999999999984 3 89999999987522 344456788999999999999999999
Q ss_pred EEcCCcEEEEECCCCcEE
Q 004327 710 IGCYETLELWNMTENKTL 727 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~ 727 (761)
++.|+.|++||+.+++.+
T Consensus 367 ~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 367 AASDENLKFWRVYDGDHV 384 (401)
T ss_dssp ECTTSEEEEEECCC----
T ss_pred EeCCCcEEEEECCCCccc
Confidence 999999999999998876
No 89
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.2e-33 Score=299.02 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.9
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 004327 516 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 516 ~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vWD 593 (761)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|.+.|.+++|++. ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46778999999999999763 346777999999999999
Q ss_pred CCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCC------
Q 004327 594 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 659 (761)
Q Consensus 594 l~t~~--~~~~~~-~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~~spd------ 659 (761)
++++. .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344443 4567999999998 7789999999999999998763 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCcEEEEECCC
Q 004327 660 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 660 -----------g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~~ 723 (761)
+.+|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|+.|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46889888 9999999997654345677888999999999999987 7899999999999999876
Q ss_pred C---c--EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 724 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 724 ~---~--~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
. . ...+..|...|++++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=279.76 Aligned_cols=265 Identities=15% Similarity=0.197 Sum_probs=227.3
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++++.|+.+++| +...+ .....+..|...|.+++|+|++++|++++.|+.|++|++..
T Consensus 30 ~~l~s~~~dg~v~vw----------------~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 30 SKVASVSRDGTVRLW----------------SKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp TEEEEEETTSEEEEE----------------EESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred CEEEEEEcCCcEEEE----------------ECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 467888888777777 33222 34566778999999999999999999999999999999865
Q ss_pred C---eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 511 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 511 ~---~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
. +.+..+..|...|.+++| ++.+|++++.||.|++|| .......+..|...|.+++|+|....++++++.|+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred cCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 4 567788899999999999 577999999999999999 23457788899999999999995467778999999
Q ss_pred cEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 004327 588 EIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Las 665 (761)
.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++. |++
T Consensus 166 ~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~ 241 (313)
T 3odt_A 166 TIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVS 241 (313)
T ss_dssp CEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEE
T ss_pred CEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEE
Confidence 9999994 45555554 567799999999977 99999999999999999999999999999999999999995 556
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 666 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 666 gs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
++ |+.|++||+.++ ..+..+..+...|.+++|+|++. +++++.|+.|++||+.+++..
T Consensus 242 ~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 242 CGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 66 999999999887 67788888899999999999998 778999999999999988766
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-31 Score=293.49 Aligned_cols=273 Identities=18% Similarity=0.274 Sum_probs=223.8
Q ss_pred ccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE
Q 004327 458 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 537 (761)
Q Consensus 458 ~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La 537 (761)
+++|+..++.. ..+..+.+|...|+||+|+|||++||+|+.||.|+|||+.+++.+..+.+|...|.++.|+ +.+|+
T Consensus 127 V~lWd~~tg~~-~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~ 203 (420)
T 4gga_A 127 VYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILS 203 (420)
T ss_dssp EEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCCE-EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEE
Confidence 34445555532 2334467889999999999999999999999999999999999999999999999999885 67999
Q ss_pred EEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEecCCCeeEE
Q 004327 538 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQM 612 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-----~~~~~~~~i~~l 612 (761)
+|+.|+.+++||.......+..+.+|...+..+.|+|++ .++++++.|+.|++|++.+++.. ....+...|.++
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~ 282 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEE
T ss_pred EEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeee
Confidence 999999999999998887788999999999999999996 56668999999999999876532 223355679999
Q ss_pred EEecCCCEEE-EE--EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEE
Q 004327 613 RFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 613 ~fspd~~~Ll-ag--s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~ 686 (761)
+|+|.+..++ ++ +.|+.|++||+.+++++..+..| ..+.++.|++++..+++++ |+.|+|||+.++ .++.
T Consensus 283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~v~ 358 (420)
T 4gga_A 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVA 358 (420)
T ss_dssp EECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEE
T ss_pred eeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cEEE
Confidence 9999766554 33 35899999999999999888754 6789999999999888764 889999999887 7888
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeE
Q 004327 687 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 738 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~s 738 (761)
.+.+|...|.+++|+|++.+|++++.|++|+|||+.+.... ....+...+..
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 99999999999999999999999999999999999776544 33334443333
No 92
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4e-31 Score=293.53 Aligned_cols=286 Identities=9% Similarity=0.054 Sum_probs=245.2
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-----EeccCCcceEEEEEcCCCCEEEEEeCCC
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-----~l~~h~~~V~~v~fspdg~~Lasgs~DG 543 (761)
+..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++.++++++.|+
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 44555565554 46699999988888888889999999999998887 3457889999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Lla 623 (761)
.|++||++++.. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.+++
T Consensus 192 ~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 192 AVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence 999999997664 6777789999999999999988888888899999999999999888887778999999999999999
Q ss_pred EE--------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 624 AA--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 624 gs--------~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
++ .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++ ..+..+. +..
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~ 345 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFD 345 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSS
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCC
Confidence 88 47899999999998777663 66689999999999866554 5 899999999876 5555554 567
Q ss_pred ceEEEEEeCCCCEEEEEEc---------------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC-CCeE
Q 004327 694 KFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCV 757 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~---------------dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~-DG~I 757 (761)
.+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeE
Confidence 7999999999999999887 46999999999998855555678999999999999998875 9999
Q ss_pred EEcC
Q 004327 758 KIWK 761 (761)
Q Consensus 758 ~IWd 761 (761)
+||+
T Consensus 426 ~v~~ 429 (433)
T 3bws_A 426 RVYR 429 (433)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.8e-32 Score=294.17 Aligned_cols=267 Identities=15% Similarity=0.165 Sum_probs=218.9
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~ 509 (761)
.++++|+.|+.+++|.. ..+.. .....+.+|.+.|++++|+| ++++|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~----------------~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDY----------------DVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEET----------------TSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeC----------------CCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 57788888888887733 22221 22233457999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 510 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 510 t~~~~~~l~~---h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||++ + ..+..+.+|...|.+++|+|++..+|++|+.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 44555543 44889999999999999999999999999995 3 35788899999999999999987788899999
Q ss_pred CcEEEEECCC----CeeeeEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------------
Q 004327 587 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 648 (761)
Q Consensus 587 g~I~vWDl~t----~~~~~~~~~~~~i~~l~fsp-d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~------------- 648 (761)
+.|++||+++ +.++..+.+...+.+++|+| ++.+|++++.|+.|++||+++++....+..|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999997 67777788888999999999 99999999999999999999876655554432
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 649 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 649 ----~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
..+..++|+|++++ +++ |+.|++||+.++ .++..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33445666677766 445 999999999887 66777765 456777889999999999996 999999998
Q ss_pred CC
Q 004327 722 TE 723 (761)
Q Consensus 722 ~~ 723 (761)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=290.09 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.0
Q ss_pred eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcE
Q 004327 512 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 589 (761)
Q Consensus 512 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~-~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I 589 (761)
+.+..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4556788999999999999999999999999999999998432 3456788999999999998762 4677799999999
Q ss_pred EEEECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC----
Q 004327 590 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 658 (761)
Q Consensus 590 ~vWDl~t~~--~~~~~~-~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~~sp---- 658 (761)
++||+.+++ .+..+. +...+.+++|+|+ +..|++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999886 444444 4567999999999 899999999999999999987 34556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCcEEEEECCCC
Q 004327 659 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 659 ---------dg~~Lasgs-Dg~I~IWdl~s~~~~-~~i~~l~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~~~ 724 (761)
++.+|++++ |+.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|+|||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999 999999999876432 355678889999999999999 899999999999999999887
Q ss_pred c----EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 725 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 725 ~----~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
. .. ....|...|++++|+|++.+|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3 22 2234889999999999999999999999999996
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.3e-31 Score=286.43 Aligned_cols=313 Identities=15% Similarity=0.264 Sum_probs=223.0
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEE-----EecCCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKAV 504 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~-----~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~ 504 (761)
.++++|+.|+.+++|.......... ....... ...+|...|++++|+| ++.+|++++.||.|+
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSY-----------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSC-----------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcccce-----------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 5788899999999884433221110 0001111 1246999999999999 788999999999999
Q ss_pred EEEcCCCeEEEEeccCCcceEEEEEcCC---CCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 004327 505 LWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 581 (761)
Q Consensus 505 VWdl~t~~~~~~l~~h~~~V~~v~fspd---g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~lla 581 (761)
+||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++..+|+
T Consensus 126 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 126 VWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEEE
T ss_pred EeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEEE
Confidence 99999999888885 7788999999984 45999999999999999998764 7788899999999999999988888
Q ss_pred EEeCCCcEEEEECCCCe-eeeEE----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004327 582 SCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 644 (761)
Q Consensus 582 sgs~Dg~I~vWDl~t~~-~~~~~----------------~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l 644 (761)
+++.||.|++||++++. ++..+ .+...+.+++|+|++.+|++++.||.|++||+++++....+
T Consensus 204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 283 (408)
T 4a11_B 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283 (408)
T ss_dssp EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC
T ss_pred EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceec
Confidence 99999999999998765 33332 24467999999999999999999999999999988765444
Q ss_pred cCCC------CCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 004327 645 QGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 718 (761)
Q Consensus 645 ~~h~------~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 718 (761)
..+. .....+.....+.+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 3221 1222333344556666666999999999887 788888999999999999999999999999999999
Q ss_pred EECCCCcEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEcC
Q 004327 719 WNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 761 (761)
Q Consensus 719 wDl~~~~~~~l~~h~~~V~slafsp-dg~~LaSgs~DG~I~IWd 761 (761)
||+.+++.+......... ..+.+ ....+.+++.|+.+++|+
T Consensus 361 w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 361 WVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEECC---------------------------------------
T ss_pred EeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 999998877332222222 22333 334556777899999995
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-32 Score=297.53 Aligned_cols=274 Identities=15% Similarity=0.169 Sum_probs=213.9
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 004327 430 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 430 ~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~ 509 (761)
..++++|+.|+.+.+| +...+ .+..+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.
T Consensus 23 g~~l~~~~~d~~i~iw----------------~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 23 RTEFVTTTATNQVELY----------------EQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SSEEECCCSSSCBCEE----------------EEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCEEEEecCCCEEEEE----------------EccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 3577888777777666 33322 234566788999999999999999999999999999999999
Q ss_pred CCe---EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc--eeEEeec-CCCCeEEEEEcCCCCcEEEEE
Q 004327 510 SFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCSC 583 (761)
Q Consensus 510 t~~---~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~--~i~~~~~-h~~~V~sl~fsp~g~~llasg 583 (761)
+++ ....+..|...|++++|+|++++|++++.|+.|++||++++.. ....+.. |...|.+++|+|++ .+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEE
Confidence 877 6777889999999999999999999999999999999997652 3566676 99999999999986 567799
Q ss_pred eCCCcEEEEECC------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE----E
Q 004327 584 DNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----R 641 (761)
Q Consensus 584 s~Dg~I~vWDl~------------------t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~----i 641 (761)
+.|+.|++||+. .++++..+.+...+.+++|+|++.+|++++.|+.|++||+++++. +
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 999999999985 244555555566799999999999999999999999999999876 7
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCC---------------------------c---------eeE
Q 004327 642 LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------G---------ECI 685 (761)
Q Consensus 642 ~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~---------------------------~---------~~i 685 (761)
..+.+|...|.+++|+|++++|++++++.+.+|+...... . ..+
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 7888999999999999999999999976666887752210 0 000
Q ss_pred EE-------------eecCCCceEEEEEeCCCC----EEEEEEcCCcEEEEEC
Q 004327 686 HE-------------LSCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 721 (761)
Q Consensus 686 ~~-------------l~~~~~~I~sl~fspdg~----~L~sgs~dg~I~IwDl 721 (761)
.. ...|...|.++.+.+... .|++++.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 112788999999766543 5999999999999985
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-31 Score=297.24 Aligned_cols=273 Identities=15% Similarity=0.201 Sum_probs=217.1
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 509 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~ 509 (761)
.+|++|+.|+.|++|... .+. ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||++
T Consensus 133 ~~lasGs~dg~i~lWd~~----------------~~~-~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFG----------------IKD-KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp TCEEEEETTSCEEEECSS----------------CCS-CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CEEEEEeCCCEEEEEECC----------------CCC-ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 578999999999888321 111 123445679999999999998 78999999999999999998
Q ss_pred CCeEEEEecc--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 510 SFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 510 t~~~~~~l~~--h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
+......... +...+.+++|++++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..+|++|+.|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 7655444433 3456789999999999999999999999999753 36778899999999999999989999999999
Q ss_pred cEEEEECCCCeeeeEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------CEEEEEEc
Q 004327 588 EIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWN 657 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~----~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~------~I~sl~~s 657 (761)
.|++||+++.+....+ .+...|.+++|+|++.+|++++.||.|+|||++++.+...+..|.. .+..+.|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 9999999876654333 3556799999999999999999999999999999887777766543 23456777
Q ss_pred CCCCEEEEEe-------------CCeEEEEECCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCcEEEEECC
Q 004327 658 TSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 658 pdg~~Lasgs-------------Dg~I~IWdl~s~~~~~~i~~l-~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
|++.+++++. ++.|++||..++ .++..+ ..|...|.++ +|+|++.+|+++ .|+.|+|||++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~ 429 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQ 429 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECC
Confidence 7777776654 247999999887 555554 4567778777 699999988775 48899999999
Q ss_pred CCcE
Q 004327 723 ENKT 726 (761)
Q Consensus 723 ~~~~ 726 (761)
+++.
T Consensus 430 ~gk~ 433 (435)
T 4e54_B 430 EART 433 (435)
T ss_dssp ----
T ss_pred cCee
Confidence 8764
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-30 Score=284.16 Aligned_cols=274 Identities=14% Similarity=0.154 Sum_probs=216.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEec
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 550 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl 550 (761)
+..+..|.+.|+|++|+|||++||+|+.++ ++|||+++++.......+ .+..++|.++++++ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445688999999999999999999998764 789999988776655332 48888999988877 56777899999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEE--EcC
Q 004327 551 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAA--AIE 627 (761)
Q Consensus 551 ~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~-~~~~~~~~~~~i~~l~fspd~~~Llag--s~d 627 (761)
.+++. +..+. |...|.+++|+++ .++ ++. |+.|++||+.++ +.+..+.. ....+++++ ..++++ +.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~--~~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSRE--FIV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSS--EEE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCC--EEE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98764 55555 6779999999976 233 333 789999999988 77666654 444566777 566664 679
Q ss_pred CeEEEEECCCCe----------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEECCCCCCceeEEEee
Q 004327 628 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 689 (761)
Q Consensus 628 g~I~IwDl~t~~----------------~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~-I~IWdl~s~~~~~~i~~l~ 689 (761)
|.|++||++++. ++..+.+|...|++++|+|++.+|++++ |++ |++||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2677889999999999999999999999 998 999999987 6777887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE---EE--------------------c-cCCCCeeEEEEeC
Q 004327 690 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 743 (761)
Q Consensus 690 -~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l--------------------~-~h~~~V~slafsp 743 (761)
+ |...|.+++|+|++.+|++++.|+.|+|||+...... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 10 0 1122347799999
Q ss_pred CCCEEEEEECCCeEEEcC
Q 004327 744 VNGMVASASHDKCVKIWK 761 (761)
Q Consensus 744 dg~~LaSgs~DG~I~IWd 761 (761)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.9e-30 Score=288.41 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=221.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe---EEEEecc-------------------------------------
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 519 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~---~~~~l~~------------------------------------- 519 (761)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 47899999999888 5555542
Q ss_pred -----------------CCcceEEEEEcCCCCEE-EEEeCCCeEEEEecC--CCCceeEEee--cCCCCeEEEEEcCCCC
Q 004327 520 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 577 (761)
Q Consensus 520 -----------------h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl~--t~~~~i~~~~--~h~~~V~sl~fsp~g~ 577 (761)
|...|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~- 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDD- 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCC-
Confidence 33379999999999996 889999999999998 6553 55554 577899999999997
Q ss_pred cEEEEEeCCCcEEEEECCCCeeee----EEe-cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-EcCCC
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 648 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~----~~~-~~~~i~~l~fspd---~~~Llags~dg~I~IwDl~t~~~i~~-l~~h~ 648 (761)
.+|++++.+|.|++|++.++.... .+. +...+.+++|+|+ +.+|++++.|+.|++||+++++.+.. +.+|.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 456688889999999998876553 333 5577999999999 88999999999999999999887777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 004327 649 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 702 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-------------------------~~~~~I~sl~fsp 702 (761)
..|.+++|+ ++.+|++++ |+.|++||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4444443 2345789999999
Q ss_pred CCCEEEEEE-cCCcEEEEEC--CCC---cEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEc
Q 004327 703 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 760 (761)
Q Consensus 703 dg~~L~sgs-~dg~I~IwDl--~~~---~~~-~l~~h~~~V~slafspdg~~LaSgs~-------DG~I~IW 760 (761)
++++|++++ .++.|+|||+ ..+ ..+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 344 45566 889999999954 4554433 4557777
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-31 Score=298.98 Aligned_cols=263 Identities=16% Similarity=0.230 Sum_probs=217.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-ccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCC---CCc--eeE
Q 004327 486 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDY--SLR 558 (761)
Q Consensus 486 afSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t---~~~--~i~ 558 (761)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +.. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677777777654 387 456788888 89999999999999 999999999999999999876 321 122
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEEe-------------cCCCeeEEE--EecCCCE
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGR 620 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t~~~~~~~~-------------~~~~i~~l~--fspd~~~ 620 (761)
.+ .|...|.+++|+|++ .+|++|+.||.|++||+. +++....+. ....+.++. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 32 599999999999985 566799999999999995 454444332 234456665 5578899
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceE
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFH 696 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-~~~~~I~ 696 (761)
|++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceE
Confidence 99999999999999999999999988 899999999999999999999 999999999886 7777765 6777899
Q ss_pred EEEEeC----CCCEEEEEEcCCcEEEEECCCCcEE-EEcc--------------------------CCCCeeEEEEeCCC
Q 004327 697 SCVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVN 745 (761)
Q Consensus 697 sl~fsp----dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--------------------------h~~~V~slafspdg 745 (761)
+++|+| ++.+|++++.|+.|+|||+.+++.+ .+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996665 5779999999999999999988876 3332 56679999999 77
Q ss_pred CEEEEEECCCeEEEcC
Q 004327 746 GMVASASHDKCVKIWK 761 (761)
Q Consensus 746 ~~LaSgs~DG~I~IWd 761 (761)
.+|++|+.||.|+|||
T Consensus 341 ~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 341 KILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred eEEEecCCCCeEEEEE
Confidence 8999999999999996
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.9e-29 Score=266.73 Aligned_cols=260 Identities=18% Similarity=0.286 Sum_probs=219.0
Q ss_pred ccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE
Q 004327 458 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 537 (761)
Q Consensus 458 ~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La 537 (761)
+++|+..++.... ...+.+|...|++++|+|++++||+|+.||+|+|||+++++.+..+.+|...+.++.+ ++.+|+
T Consensus 47 V~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~ 123 (318)
T 4ggc_A 47 VYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILS 123 (318)
T ss_dssp EEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEE
T ss_pred EEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEE
Confidence 3344555554322 2345689999999999999999999999999999999999999999999998887766 467999
Q ss_pred EEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEecCCCeeEE
Q 004327 538 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQM 612 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-----~~~~~~~~i~~l 612 (761)
+++.++.+++|+.......+..+.+|...+.++.|.+++ .++++++.|+.|++||+++++.. ........+.++
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 999999999999998888888999999999999999996 46669999999999999876532 222345678999
Q ss_pred EEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEE
Q 004327 613 RFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 613 ~fspd~~~Ll---ags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~ 686 (761)
.++|++..++ +++.++.|++||.+......... +...+..++|++++..+++++ |+.|++||+.++ .++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~ 278 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVA 278 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEE
T ss_pred EecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEE
Confidence 9999776554 33457899999999987776655 677899999999999887654 889999999887 7888
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 687 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 687 ~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
.+.+|...|.+++|+|++.+|++++.|+.|+|||+.+..
T Consensus 279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999999999999999997653
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.2e-30 Score=288.39 Aligned_cols=280 Identities=18% Similarity=0.362 Sum_probs=224.4
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 510 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t 510 (761)
.++++|+.|+.+.+|. ..++ ..+..+.+|.+.|++++| ++++|++|+.||.|++||+.+
T Consensus 144 ~~l~~g~~dg~i~iwd----------------~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWD----------------KNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SEEEEEESSSCEEEEE----------------SSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CEEEEEeCCCeEEEEe----------------CCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 5778888888888772 2222 345678899999999999 788999999999999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce--eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 588 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~--i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~ 588 (761)
++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++|+.||.
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 277 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRT 277 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSE
T ss_pred CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCe
Confidence 999999999999999999974 59999999999999999876642 26778899999999994 457779999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 589 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
|++||+++++++..+.. ...+.++.|+ +..+++++.||.|++||+++++++..+.+|...|.+++| ++.+|++++
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 99999999999988874 4568888884 579999999999999999999999999999999999999 788999999
Q ss_pred -CCeEEEEECCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEE
Q 004327 668 -DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 740 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~------~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~sla 740 (761)
||.|++||+.++.. ..++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++.
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 431 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYT 431 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------------------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCcccee
Confidence 99999999976431 1278888899999999999 77889999999999999998877664444445555555
Q ss_pred Ee
Q 004327 741 AS 742 (761)
Q Consensus 741 fs 742 (761)
|.
T Consensus 432 ~~ 433 (435)
T 1p22_A 432 YI 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 54
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.3e-30 Score=287.51 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=209.9
Q ss_pred EEeccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCC---------CceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 515 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 515 ~~l~~h~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~---------~~~i~~~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+... ...+..+.+|...|++++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 679999999999999999862 3346788899999999999999876888999
Q ss_pred CCCcEEEEECCCCee-------eeEE-ecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004327 585 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 652 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~~-------~~~~-~~~~~i~~l~fsp-d~~~Llags~dg~I~IwDl~t~---~~i~~l~~h~~~I~ 652 (761)
.||.|++||+..+.. ...+ .+...+.+++|+| ++..|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCC------
Q 004327 653 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 723 (761)
Q Consensus 653 sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~------ 723 (761)
+++|+|++. +|++++ |+.|++||+++.. ..+..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999998743 46777788999999999999995 688999999999999977
Q ss_pred --------CcEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEcC
Q 004327 724 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 761 (761)
Q Consensus 724 --------~~~~-~l~~h~~~V~slafspdg~-~LaSgs~DG~I~IWd 761 (761)
...+ .+.+|...|++++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6668999999999999999 999999999999996
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=288.20 Aligned_cols=281 Identities=14% Similarity=0.238 Sum_probs=220.7
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCC------------CCeEEEEEcCCC--CEEEE
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDG--KLLAT 496 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~------------~~V~~lafSpdg--~~Las 496 (761)
.++++|+.|+.+.+|......... ......+..+..+.+|. +.|++++|+|++ .+|++
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred CEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 578999999999988443221100 01123455677888998 899999999998 79999
Q ss_pred EECCCeEEEEEcCCCeEE---------------------------------------EE-eccCCcceEEEEEcCCCCEE
Q 004327 497 GGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVRFSPSLSRL 536 (761)
Q Consensus 497 gs~Dg~I~VWdl~t~~~~---------------------------------------~~-l~~h~~~V~~v~fspdg~~L 536 (761)
++.|+.|+|||+.++... .. ..+|...|++++|+|++++|
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 999999999998764432 12 36899999999999999999
Q ss_pred EEEeCCCeEEEEecCCCCceeE-------EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEEec
Q 004327 537 ATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 605 (761)
Q Consensus 537 asgs~DG~I~VWDl~t~~~~i~-------~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~----~~~~~~ 605 (761)
++| .|+.|++||++.....+. .+.+|...|.+++|+|++..+|++|+.||.|++||+++++. +..+..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE 271 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc
Confidence 998 899999999985444344 35689999999999999867888999999999999998886 566665
Q ss_pred CC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCC---------------EEEEEE
Q 004327 606 QS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVCW 656 (761)
Q Consensus 606 ~~-------------~i~~l~fspd~~~Llags~dg~I~IwDl~t-~~~i~~l~~h~~~---------------I~sl~~ 656 (761)
+. .+.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++|
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 350 (447)
T 3dw8_B 272 PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW 350 (447)
T ss_dssp C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEE
Confidence 43 7999999999999999988 9999999997 8888888877532 334999
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCCCCceeEEE-----------------------------eecCCCceEEEEEeCCCCE
Q 004327 657 NTSGEYLASVS-DELVRVWSIGSGSKGECIHE-----------------------------LSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 657 spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~-----------------------------l~~~~~~I~sl~fspdg~~ 706 (761)
+|++.+|++++ |+.|++||+.++........ .......|..++|+|++++
T Consensus 351 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 430 (447)
T 3dw8_B 351 NGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI 430 (447)
T ss_dssp CTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCE
Confidence 99999999999 99999999988632110000 0022356889999999998
Q ss_pred EEEEEcCCcEEEEECC
Q 004327 707 LLVIGCYETLELWNMT 722 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~ 722 (761)
|++++.++ +++|..+
T Consensus 431 la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 431 IAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEEECSSC-EEEEECC
T ss_pred EEEEecce-eeeeccc
Confidence 88877765 8888754
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=286.90 Aligned_cols=265 Identities=8% Similarity=0.024 Sum_probs=212.3
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC---------CCCce
Q 004327 486 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 556 (761)
Q Consensus 486 afSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~---------t~~~~ 556 (761)
.+.+|+.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344578899999999999999999999888876 467888999988 9999999999999766 33322
Q ss_pred eEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 557 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp--~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
.....+|...|.+++|+| ++ .++++++.||.|++||+++++++..+. ....+.+++|+|++.+|++|+.||.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 75 567799999999999999998876653 3346999999999999999999999999
Q ss_pred EECCCCeEE-EEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 004327 633 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 708 (761)
Q Consensus 633 wDl~t~~~i-~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I--~sl~fspdg~~L~ 708 (761)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333332233333 4699999999999
Q ss_pred EEEc-CCcEEEEECCCCcEE-EEccCCCCeeEEEEeC---CCCEEEEEECCCeEEEc
Q 004327 709 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 760 (761)
Q Consensus 709 sgs~-dg~I~IwDl~~~~~~-~l~~h~~~V~slafsp---dg~~LaSgs~DG~I~IW 760 (761)
+++. |+.|+||++...... .. .++..++|.+ +...|++++.||.+.+|
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999665432 22 5677788887 77888888888888775
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-31 Score=306.81 Aligned_cols=256 Identities=9% Similarity=0.054 Sum_probs=199.0
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCeEE----EEeccCCcceEEEEEcCC------CCEEEEEeCCCeEEEEecCCCCc--
Q 004327 488 SPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 555 (761)
Q Consensus 488 Spdg~~Lasgs~Dg~I~VWdl~t~~~~----~~l~~h~~~V~~v~fspd------g~~Lasgs~DG~I~VWDl~t~~~-- 555 (761)
+|++++|++++.|++|+|||+.+++.. .++..|.+.|.+|+|+|+ +.+||+++.||+|+|||+..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344445566778899999999876542 446678899999999996 57999999999999999986542
Q ss_pred --------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEE--EEecCC-CEEE
Q 004327 556 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRIL 622 (761)
Q Consensus 556 --------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-~~~~~~-~~~~i~~l--~fspd~-~~Ll 622 (761)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. ....+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 134678899999999999863 68899999999999999764 334444 45679998 567877 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004327 623 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 699 (761)
Q Consensus 623 ags~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~ 699 (761)
+++.|++|+|||+++++++..+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|.+++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666643 588999999999999888 889999999886 56667778999999999
Q ss_pred EeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-----cCCCCeeEEEEeCCCCEE
Q 004327 700 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-----~h~~~V~slafspdg~~L 748 (761)
|+|++++|++|+.|++|+|||+......... .+...|++++|+|++..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998664221211 112257899999999855
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.7e-29 Score=271.82 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.0
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 570 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl 570 (761)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 48999999999977 5667899999999988664 55555444 89999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 649 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~L-lags~dg~I~IwDl~t~~~i~~l~~h~~ 649 (761)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999888888888899999999999999999888889999999999988 45666899999999999998888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCcEEEEECCCC
Q 004327 650 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 724 (761)
Q Consensus 650 ~I~sl~~spdg~~La-sgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs---~dg~I~IwDl~~~ 724 (761)
.+.+++|+|++++|+ +++ |+.|++||++++ .++..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 445 889999999886 5555544 456789999999999999998 6889999999999
Q ss_pred cEEEEccCCCCeeEEEEeCCCCEE-EEEECCCeEEEcC
Q 004327 725 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 761 (761)
Q Consensus 725 ~~~~l~~h~~~V~slafspdg~~L-aSgs~DG~I~IWd 761 (761)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887444444568999999999877 6678899999996
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.8e-30 Score=284.29 Aligned_cols=251 Identities=17% Similarity=0.228 Sum_probs=210.2
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------eEEEEeccCCcceEEEEEcCCC-CEEEEEeCC
Q 004327 472 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSAD 542 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~D 542 (761)
+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +.+..+.+|...|++++|+|++ .+|++++.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 445789999999999999 9999999999999999999987 6678889999999999999998 699999999
Q ss_pred CeEEEEecCCCCceeEEe--ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-ecCC--CeeEEEEecC
Q 004327 543 RTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPR 617 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~--~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~--~i~~l~fspd 617 (761)
|.|+|||+.++.. +..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|+
T Consensus 154 g~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 154 NVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp SCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 9999999998664 6667 78999999999999865 5558889999999999999998887 3333 2799999999
Q ss_pred CCEEEEE---EcCCeEEEEECCCCeE-EEEE-cCCCCCEEEEEEcCCCCEEEE-Ee-CCeEEEEECCCCCC-ceeEEEee
Q 004327 618 LGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELS 689 (761)
Q Consensus 618 ~~~Llag---s~dg~I~IwDl~t~~~-i~~l-~~h~~~I~sl~~spdg~~Las-gs-Dg~I~IWdl~s~~~-~~~i~~l~ 689 (761)
+.+|+++ +.|+.|++||+++... +... ..|...|.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 8888887 5899999999998643 2222 247788999999999999865 54 99999999988753 22333333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 690 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 690 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
+...|.+++|+|++.++++ .++.+++|++.++.+.
T Consensus 312 -~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 312 -SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp -CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred -cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 5688999999999987654 5669999999887654
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8.7e-30 Score=285.05 Aligned_cols=253 Identities=19% Similarity=0.367 Sum_probs=219.4
Q ss_pred EEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCC----------CeEEEEeccCCcceEEEEEcCCCC-EEEEE
Q 004327 472 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATS 539 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t----------~~~~~~l~~h~~~V~~v~fspdg~-~Lasg 539 (761)
......|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456689999999999997 78999999999999999986 677888999999999999999988 99999
Q ss_pred eCCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEe-cCCCe
Q 004327 540 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGA 609 (761)
Q Consensus 540 s~DG~I~VWDl~t~~~------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~---~~~~~~~-~~~~i 609 (761)
+.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++ +.+..+. +...+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987432 145677899999999999977889999999999999999976 4555553 55779
Q ss_pred eEEEEecCCC-EEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCCC----
Q 004327 610 TQMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK---- 681 (761)
Q Consensus 610 ~~l~fspd~~-~Llags~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~~~---- 681 (761)
.+++|+|++. .|++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999887 578899999999999998 567888889999999999999995 677777 99999999986321
Q ss_pred -------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCCC
Q 004327 682 -------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 682 -------~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~~ 724 (761)
...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777788899999999999999 8999999999999998654
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.7e-29 Score=268.80 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=219.7
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEc-
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT- 508 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl- 508 (761)
.++++++.|+.+.+| +...+........+.+|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 24 ~~l~~~~~d~~v~iw----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 24 SLLLITSWDGSLTVY----------------KFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp TEEEEEETTSEEEEE----------------EEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CEEEEEcCCCeEEEE----------------EeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 467777777777766 3333332233455668999999999999999 9999999999999999
Q ss_pred CCCeEEEEecc--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCC
Q 004327 509 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 509 ~t~~~~~~l~~--h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t---------~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
.+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ .. .+..+. |...|.+++|+|++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE-
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc-
Confidence 87755 67778 999999999999 99999999999999999986 43 244444 88999999999875
Q ss_pred cEEEEEeCCCcEEEEECCC-Ceee---eEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC------eEEEEEcC
Q 004327 578 DLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQG 646 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t-~~~~---~~~~~~~~i~~l~fsp-d~~~Llags~dg~I~IwDl~t~------~~i~~l~~ 646 (761)
+++++.|+.|++||+++ +... ....+...+.+++|+| ++.++++++.||.|++||++.. +....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 67888999999999997 5432 2223456799999999 9999999999999999999876 77777877
Q ss_pred CCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCc
Q 004327 647 HKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET 715 (761)
Q Consensus 647 h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~L~sgs~dg~ 715 (761)
|.. .|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 765 999999999999999999 999999999887 778888888 99999999 99999999999998
Q ss_pred -EEEEE
Q 004327 716 -LELWN 720 (761)
Q Consensus 716 -I~IwD 720 (761)
.+.|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 55444
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.3e-29 Score=276.16 Aligned_cols=243 Identities=12% Similarity=0.132 Sum_probs=194.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE-----------CCCeEEEEEcCCCeEE----EEe-----ccCCcceEEEEEcCC
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK----STL-----EEHTQWITDVRFSPS 532 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs-----------~Dg~I~VWdl~t~~~~----~~l-----~~h~~~V~~v~fspd 532 (761)
..+.+|...|.|++++ ++.+++|. .|+.|++|++.+.... ... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4578999999998875 45677654 4778999988654322 111 234567999999999
Q ss_pred CCEEEEEe--CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCC
Q 004327 533 LSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQS 607 (761)
Q Consensus 533 g~~Lasgs--~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~ 607 (761)
|++|++++ .|++|+|||+.+... +..+ .|...|.+++|+|++. ++++++ ++.+++|+..++..+.... +..
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~-~~~~-~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTE-KFEI-ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcE-EEEe-CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCC
Confidence 99987654 689999999998664 4444 4788999999999975 555777 4567777777776654432 334
Q ss_pred CeeEEEEecCCCEEEEEEcCC----eEEEEECCCCeE----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCC
Q 004327 608 GATQMRFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 678 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~dg----~I~IwDl~t~~~----i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s 678 (761)
.+.+++|+|++..+++++.++ .+.+||+..... ...+.+|...|++++|+|||++|++++ |+.|+|||+.+
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 589999999999999999887 688899877643 456778999999999999999999999 99999999988
Q ss_pred CCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 679 GSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 679 ~~~~~~i~~l-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
+ .++..+ .+|...|++++|+||+++|++++.|++|+|||+..+
T Consensus 301 ~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 L---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp T---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred C---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7 777764 689999999999999999999999999999999654
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=294.14 Aligned_cols=262 Identities=10% Similarity=0.083 Sum_probs=211.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 556 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~ 556 (761)
.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+|+|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 4457799999999999999999999999 765554 447999999999999998 45655555543211
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-----CeeEEEEecCCCEEEEEEcCCeEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-----~i~~l~fspd~~~Llags~dg~I~ 631 (761)
...+ .|...|.+++|+|+|. .+++++.||.|++||... ++..+.++. .+.+++|+|++.+|++++.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 1122 4578899999999974 556889999999999654 555555322 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEE
Q 004327 632 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 699 (761)
Q Consensus 632 IwDl~t~~-------~i~~l----~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l-~~~~~~I~sl~ 699 (761)
+||+.++. .+.++ .+|...|.+++|+||| +++++.|+.|++||+.+.........+ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999875 35666 6678899999999999 444444999999999876432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-cCCCCeeEEEE--eCCCCEEEEEECCCeEEEcC
Q 004327 700 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAA--STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 700 fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~slaf--spdg~~LaSgs~DG~I~IWd 761 (761)
|+ +..|++++ ++.|++||+.+++...+. +|...|++++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 699999999999885444 89999999999 999999999999999 8884
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.5e-28 Score=266.05 Aligned_cols=275 Identities=15% Similarity=0.168 Sum_probs=222.0
Q ss_pred eeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEEcCC
Q 004327 432 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTES 510 (761)
Q Consensus 432 ~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWdl~t 510 (761)
++.+++.++.+.+| +...+. .+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+
T Consensus 4 l~vs~~~d~~v~v~----------------d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~ 63 (391)
T 1l0q_A 4 AYIANSESDNISVI----------------DVTSNK---VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63 (391)
T ss_dssp EEEEETTTTEEEEE----------------ETTTTE---EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred EEEEcCCCCEEEEE----------------ECCCCe---EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCC
Confidence 44555666555555 444442 344556665 49999999999977 6666899999999999
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++. +..+. +...+.+++|+|+++.++++++.++.|
T Consensus 64 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 64 NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 99998887665 899999999999886554 679999999998654 45555 445789999999998887899999999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 004327 590 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 667 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Ll-ags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs- 667 (761)
++||+.+++.+..+..+..+.+++|+|++++++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 141 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence 999999999999998888899999999999885 45568999999999998887776 566899999999999888775
Q ss_pred ---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE-EEcCCcEEEEECCCCcEE-EEccCCC
Q 004327 668 ---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTL-TLSAHDK 734 (761)
Q Consensus 668 ---Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s-gs~dg~I~IwDl~~~~~~-~l~~h~~ 734 (761)
++.|++||+.++ ..+..+..+ ..+.+++|+|++++|++ ++.|+.|++||+.+++.+ .+..|..
T Consensus 220 ~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp CSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 679999999876 566666654 45789999999998854 467889999999999877 4444433
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-30 Score=307.85 Aligned_cols=252 Identities=20% Similarity=0.313 Sum_probs=214.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC--CCeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEE
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 547 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~--t~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~V 547 (761)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EecCCCCc-eeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEecCCCeeEEEEec------
Q 004327 548 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP------ 616 (761)
Q Consensus 548 WDl~t~~~-~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~~~~---~~~~~~~~i~~l~fsp------ 616 (761)
||+.++.. .+..+.+|...|++++|+|+. ..++++|+.||.|++||++++... ....+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998652 466778899999999999983 457779999999999999877332 2233567799999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEECCCCCC
Q 004327 617 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 617 -------d~~~Llags~dg~I~IwDl~t~----~~i~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ |+.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5889999999999999999876 667788899999999999999 89999999 99999999987532
Q ss_pred c--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 682 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 682 ~--~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12233345778899999999999999999999999999874
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=294.20 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=204.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCc-----ceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~-----~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
.|...|++|+|||||++||+++.||.|+|||.++ ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999655 666677 665 49999999999999999999999999999
Q ss_pred CCCc------eeEEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe--cCCCeeEEEEec
Q 004327 552 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 616 (761)
Q Consensus 552 t~~~------~i~~~----~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~---~~~~--~~~~i~~l~fsp 616 (761)
++.. .+.++ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8653 35665 6778899999999997 557778999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004327 617 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 693 (761)
Q Consensus 617 d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~--spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~ 693 (761)
+..+++++ ++.|++||+.+++......+|...|..+.| +|++..|++++ ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57787776 799999999998885544479999999999 99999999999 889 999975
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
.+.|+|++..+++. |+.+++|+...+....+ .+...|++++|+|||.++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866654 89999999876653333 34677999999999999999874
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.4e-29 Score=277.25 Aligned_cols=261 Identities=15% Similarity=0.144 Sum_probs=177.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-----EeccCCcceEEEEEcC--------CCCEEEEEeCC
Q 004327 476 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD 542 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-----~l~~h~~~V~~v~fsp--------dg~~Lasgs~D 542 (761)
..|...+....+++++.+||+++.|++|+|||+.++.... .+.+|.+.|++|+|+| |+.+||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455666666677788899999999999999998876543 3578999999999997 78899999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRI 621 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd~~~L 621 (761)
++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++.......... .... .
T Consensus 166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------~ 236 (393)
T 4gq1_A 166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------L 236 (393)
T ss_dssp SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC--------S
T ss_pred CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce--------E
Confidence 9999999987654 6667778999999999999888899999999999999998776544332111 0000 0
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce----
Q 004327 622 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---- 695 (761)
Q Consensus 622 lags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~s-pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I---- 695 (761)
+. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+
T Consensus 237 ~s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 237 LT---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp EE---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred Ee---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 11 1111111122234688899999987 7999999999 99999999987632 22222222222
Q ss_pred --------------EEEEEeC-CC-CEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 696 --------------HSCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 696 --------------~sl~fsp-dg-~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
..+.|++ .+ .++++++.|+.|+|||+.++... .+..|...|++++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 2223333 33 34566677999999999988776 667899999999999999999999988853
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.2e-28 Score=256.58 Aligned_cols=278 Identities=19% Similarity=0.245 Sum_probs=202.3
Q ss_pred CeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEEc
Q 004327 431 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 431 ~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWdl 508 (761)
.++++++.|+.+++|.... ....+..+..+.+|...|++++|+| |+++|++|+.||.|+|||+
T Consensus 24 ~~l~~~~~dg~i~iw~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDK---------------DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp SEEEEEETTSEEEEEEECS---------------SSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred CEEEEeeCCCeEEEEECCC---------------CCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 5778888888888773211 1223356677889999999999999 6999999999999999999
Q ss_pred CCC---------eEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEecCCCCceeEEe-------------ecCC
Q 004327 509 ESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTF-------------TGHS 564 (761)
Q Consensus 509 ~t~---------~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~VWDl~t~~~~i~~~-------------~~h~ 564 (761)
.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.++.. +..+ ..|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSCS
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCcc
Confidence 887 667888899999999999999 99999999999999999987653 2111 2578
Q ss_pred CCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCee--eeEEe-cCCCeeEEEEecCC----CEEEEEEcCCeEEEEEC
Q 004327 565 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDV 635 (761)
Q Consensus 565 ~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t~~~--~~~~~-~~~~i~~l~fspd~----~~Llags~dg~I~IwDl 635 (761)
..+.+++|+|+ ...++++++.|+.+.+|+...+.. +..+. +...|.+++|+|++ .+|++++.||.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 356777889999998888887765 33333 45679999999998 78999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 636 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 636 ~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
+++........+...+....+.+...++..+. ...+.+|+. .....+..+..|...|.+++|+|++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN---LQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EECC---------------------------------------CCS---EEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc---ccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98765555544444555555555555555544 223444443 3337788888999999999999999999999
Q ss_pred EcCCcEEEEECCCCcEE
Q 004327 711 GCYETLELWNMTENKTL 727 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~ 727 (761)
+.|+.|+|||+.+++.+
T Consensus 325 ~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ETTSCEEEEEECTTSCE
T ss_pred cCCCcEEEEecCcCcch
Confidence 99999999999887544
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=257.33 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=225.3
Q ss_pred CcceEEEEecCCCccccccCCcccccCCeeeccccCCceeeccCCCCCCCCCccccceecCC-CceeEEEEEecCCCCCe
Q 004327 404 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK-GFTFTEFQLIPASTSKV 482 (761)
Q Consensus 404 ~~~s~l~~s~d~~~~l~~~~~~l~~~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~-g~~~~~v~~l~~H~~~V 482 (761)
.....+.|+++.. ...++++|+.|+.+++|.. .. +. .....+.+|.+.|
T Consensus 40 ~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~----------------~~~~~--~~~~~~~~h~~~v 89 (368)
T 3mmy_A 40 DSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEV----------------QDSGQ--TIPKAQQMHTGPV 89 (368)
T ss_dssp SCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEE----------------CTTSC--EEEEEEEECSSCE
T ss_pred CceEEEEEcCCCC------------CceEEEEECCCCcEEEEEc----------------CCCCc--eeEEEeccccCCE
Confidence 3466666766521 0257788888888877732 22 21 2235678899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEE--cCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~f--spdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
++++|+|++++|++++.||.|++||+.+++.+. +..|...|++++| ++++.+|++++.||.|++||+.++.. +..+
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~ 167 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVL 167 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEE
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEE
Confidence 999999999999999999999999999988776 4579999999999 89999999999999999999998764 6666
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCE----EEEEEcCCeEEEE
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISIL 633 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~----Llags~dg~I~Iw 633 (761)
..+. .+.++.+.+. .+++++.++.+++|+++......... ....+.++.+.++... +++++.||.|++|
T Consensus 168 ~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 168 QLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp ECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred ecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 6554 6777777743 55577779999999998765433222 2244666777665544 9999999999999
Q ss_pred ECCCC---eEEEEEcCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE
Q 004327 634 DVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 697 (761)
Q Consensus 634 Dl~t~---~~i~~l~~h~~------------~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~s 697 (761)
|++.. ..+..+..|.. .|.+++|+|++.+|++++ |+.|++||+.++ .++..+..|...|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISA 320 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceE
Confidence 99987 55667777765 799999999999999999 999999999877 788889999999999
Q ss_pred EEEeCCCCEEEEEEcCCcEE---EEECCCCcEE
Q 004327 698 CVFHPTFPSLLVIGCYETLE---LWNMTENKTL 727 (761)
Q Consensus 698 l~fspdg~~L~sgs~dg~I~---IwDl~~~~~~ 727 (761)
++|+|++.+|++++.|+..+ +|+.+....+
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EEECCCCCeEEEEecccccccccccCCCcccee
Confidence 99999999999999998544 4444444444
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-29 Score=299.96 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=210.8
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 004327 515 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW 592 (761)
Q Consensus 515 ~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~-~~i~~~~~h~~~V~sl~fsp~g-~~llasgs~Dg~I~vW 592 (761)
..+.+|.+.|++++|+|++++|++|+.||+|+|||+..+. ..+..+.+|.+.|++++|+++. ..++++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998432 3466788999999999999872 4677799999999999
Q ss_pred ECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC-------
Q 004327 593 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------- 658 (761)
Q Consensus 593 Dl~t~~--~~~~~~-~~~~i~~l~fspd--~~~Llags~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~~sp------- 658 (761)
|+.++. .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 444443 5577999999999 999999999999999999887 34556678999999999999
Q ss_pred ------CCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCcEEEEECCCCc--
Q 004327 659 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK-- 725 (761)
Q Consensus 659 ------dg~~Lasgs-Dg~I~IWdl~s~~~~-~~i~~l~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~~~~-- 725 (761)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 588999998 999999999876432 456678889999999999999 8999999999999999998863
Q ss_pred ----EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 ----~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.3e-27 Score=263.64 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=204.1
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEEcC--CCeEEEEec--cCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 475 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWdl~--t~~~~~~l~--~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
..+|.+.|++++|+|++++| |+|+.||.|+|||+. +++.+..+. .|...|++++|+|++.+|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999996 899999999999999 888887776 6778999999999999999999999999999
Q ss_pred cCCCCc---eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEE
Q 004327 550 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 550 l~t~~~---~i~~~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Ll 622 (761)
+.+... ....+.+|...|.+++|+|+ +..+|++|+.|+.|++||+++++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987653 23367889999999999998 24677799999999999999988877643 55779999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 004327 623 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 675 (761)
Q Consensus 623 ags~dg~I~IwDl~t~~~i~~l~~-------------------------h~~~I~sl~~spdg~~Lasgs--Dg~I~IWd 675 (761)
+++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|++|+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887763 245799999999999999887 78999999
Q ss_pred C--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCcEEEEECC
Q 004327 676 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 722 (761)
Q Consensus 676 l--~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~ 722 (761)
+ .++.....+..+..+ ..|.+++|+|++ .+++++. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 544444666777776 889999999964 3444433 3457888653
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.9e-27 Score=259.55 Aligned_cols=245 Identities=9% Similarity=0.027 Sum_probs=188.3
Q ss_pred EEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 004327 505 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 505 VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs 584 (761)
||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||++.... ... .+...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence 566677777777889999999999999999999998775 78999886543 222 22235788889988877877888
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEE
Q 004327 585 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 663 (761)
Q Consensus 585 ~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~~spdg~~L 663 (761)
.|+.|++||+.+++++..+.+...+.++.|+++ .+ +.+.++.|++||+.+. +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999886 23 3346899999999987 55554443 445566777 666
Q ss_pred EEE--e-CCeEEEEECCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCc-EEEEECCCCcE
Q 004327 664 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 726 (761)
Q Consensus 664 asg--s-Dg~I~IWdl~s~~~~------------~-~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~-I~IwDl~~~~~ 726 (761)
+++ + ||.|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-EEc-c-CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 727 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 727 ~-~l~-~-h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+ .+. + |...|++++|+|++.+|++++.||.|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 8 555 4 999999999999999999999999999996
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.4e-26 Score=263.70 Aligned_cols=286 Identities=11% Similarity=0.080 Sum_probs=232.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEc--CCCeEEEEeccCCcceEEEEEcC----CCCEEEEEeC-CCe
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRT 544 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl--~t~~~~~~l~~h~~~V~~v~fsp----dg~~Lasgs~-DG~ 544 (761)
+..+..+.. +.+++|+|||++|++++.|++|.+||+ .+++.+.++.. ...+..++|+| |+++|++++. +++
T Consensus 172 ~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 172 VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 444553323 899999999999999999999999999 88998888874 45689999999 9999999885 899
Q ss_pred EEEEecCCCCceeEEeec----------CC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EEecCCCeeE
Q 004327 545 VRVWDTENPDYSLRTFTG----------HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQ 611 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~----------h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~--~~~~~~~i~~ 611 (761)
|.|||..+.+. +..+.. |. ..+.++.++|++..++++...++.|.+||+.+.+.+. .+.....+..
T Consensus 250 v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~ 328 (543)
T 1nir_A 250 FAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD 328 (543)
T ss_dssp EEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred EEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC
Confidence 99999988664 555443 22 3789999999999999999999999999998866544 4455566888
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEECCCCCC--
Q 004327 612 MRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK-- 681 (761)
Q Consensus 612 l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~~spd-g~~Lasgs--Dg~I~IWdl~s~~~-- 681 (761)
+.|+|+++++++++. ++.|.+||+.+++++..+.. |.+....+ ++|+ +.+++++. |++|.+||+.+...
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 999999998887765 78999999999999888874 55444443 4676 66677764 78999999987322
Q ss_pred --ceeEEEeecCCCceEEEEEeCCCCEEEEEE-------cCCcEEEEECCCCcEE-EE---------ccCCCCeeEEEEe
Q 004327 682 --GECIHELSCTGNKFHSCVFHPTFPSLLVIG-------CYETLELWNMTENKTL-TL---------SAHDKLVSSLAAS 742 (761)
Q Consensus 682 --~~~i~~l~~~~~~I~sl~fspdg~~L~sgs-------~dg~I~IwDl~~~~~~-~l---------~~h~~~V~slafs 742 (761)
.+++..+..+...+..+.|+|++++|++++ .+++|.|||+.+++.. .. ..+...+..++|+
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 487 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence 488999999888889999999999999987 2679999999988765 32 3567889999999
Q ss_pred CCCCEEEEEE-----CCCeEEEcC
Q 004327 743 TVNGMVASAS-----HDKCVKIWK 761 (761)
Q Consensus 743 pdg~~LaSgs-----~DG~I~IWd 761 (761)
|+|++|+++. .|+.|.|||
T Consensus 488 ~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 488 KRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp SSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCEEEEEeecCCCCCCeEEEEE
Confidence 9999888763 379999997
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.2e-25 Score=249.27 Aligned_cols=259 Identities=11% Similarity=0.116 Sum_probs=213.9
Q ss_pred ccceecCCCceeEEEE--EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCE
Q 004327 458 GRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 535 (761)
Q Consensus 458 ~r~~d~~~g~~~~~v~--~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~ 535 (761)
+++|+..++.....+. .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|++++
T Consensus 146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (433)
T 3bws_A 146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL 225 (433)
T ss_dssp EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE
T ss_pred EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE
Confidence 4445555444332211 45689999999999999999999999999999999999999999899999999999999998
Q ss_pred EEEEe-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCCeeeeEEecCC
Q 004327 536 LATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-------NNSEIRYWSINNGSCAGVFKCQS 607 (761)
Q Consensus 536 Lasgs-~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs-------~Dg~I~vWDl~t~~~~~~~~~~~ 607 (761)
+++++ .|+.|++||+.++.. +..+.. ...+.+++|+|++..+++++. .|+.|++||+.+++.+..+....
T Consensus 226 l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~ 303 (433)
T 3bws_A 226 VYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG 303 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC
Confidence 86554 799999999987653 555554 456999999999876665543 58899999999999888887777
Q ss_pred CeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---------------Ce
Q 004327 608 GATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---------------EL 670 (761)
Q Consensus 608 ~i~~l~fspd~~~Llag-s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D---------------g~ 670 (761)
.+.+++|+|+++.++++ +.++.|++||+++++.+..+. +...+.+++|+|++++|++++ + |.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 89999999999876555 678999999999998888776 778899999999999888877 2 48
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCC
Q 004327 671 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 723 (761)
Q Consensus 671 I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~ 723 (761)
|++||+.++ ..+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 383 v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 383 VYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999999876 55666654 557899999999999998886 99999999864
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=5e-26 Score=244.56 Aligned_cols=258 Identities=13% Similarity=0.056 Sum_probs=190.5
Q ss_pred ccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC---
Q 004327 456 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--- 532 (761)
Q Consensus 456 ~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd--- 532 (761)
..+++|+..++..++.+.++.+|..+|..+.|.||-.-|++..- =.-+...|..++|+||
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~sla~spd~~~ 125 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------------GNLEIREIRALFCSSDDES 125 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------------CSSSEEEEEEECC------
T ss_pred ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------------ccccccceEEEEECCCccc
Confidence 45677888888888999999999999999999998654443321 0124567999999999
Q ss_pred -CCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEECC-CCeeeeEEe-cCC
Q 004327 533 -LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN-NGSCAGVFK-CQS 607 (761)
Q Consensus 533 -g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs--~Dg~I~vWDl~-t~~~~~~~~-~~~ 607 (761)
+.++++++.+ +.+|++.++ .++.+++ .|+.|++|++. +++.+..+. +..
T Consensus 126 ~~~~l~s~g~~--~~v~~l~~g------------------------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~ 179 (356)
T 2w18_A 126 EKQVLLKSGNI--KAVLGLTKR------------------------RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP 179 (356)
T ss_dssp CCEEEEEEEEE--EEEEEETTT------------------------EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred cccEEEeCCCe--EEEEecCCC------------------------cEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence 8899998744 777866432 2333322 35666666663 244444433 345
Q ss_pred CeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC---CEEEEEEcCCCCEE------------EEEe-C
Q 004327 608 GATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHKN---QVHSVCWNTSGEYL------------ASVS-D 668 (761)
Q Consensus 608 ~i~~l~fsp---d~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~---~I~sl~~spdg~~L------------asgs-D 668 (761)
.++.++|++ ++..|++++.|++|+|||+++++++.++.+|.. .+.+++|+|+|.++ ++|+ |
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 678888988 779999999999999999999999999987543 67788999999887 4466 8
Q ss_pred CeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCee-EEEE
Q 004327 669 ELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLAA 741 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l-----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~-slaf 741 (761)
++|++||..++ .++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. +++|
T Consensus 260 ~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 260 FQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp EEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred cEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 89999999887 554443 2444455544444 778999999999999999999988 6778877655 6899
Q ss_pred eCCCCEEEEEECCCeEEEcC
Q 004327 742 STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 742 spdg~~LaSgs~DG~I~IWd 761 (761)
+|||++|++|+.|++|||||
T Consensus 335 SPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEECCCcEEEec
Confidence 99999999999999999997
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.3e-26 Score=253.27 Aligned_cols=282 Identities=12% Similarity=0.076 Sum_probs=228.0
Q ss_pred Cccccceec--CCCceeEEEEEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CeEEEEEcCCCe
Q 004327 455 DRVGRSAEV--GKGFTFTEFQLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFT 512 (761)
Q Consensus 455 d~~~r~~d~--~~g~~~~~v~~l~~H~~~V~~lafSp--------------dg~~Lasgs~D------g~I~VWdl~t~~ 512 (761)
+...++|+. .++..+ .-..+.+|...|.++++++ .+..|+.++.+ +.|++||++. .
T Consensus 92 ~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~ 169 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y 169 (415)
T ss_dssp EEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C
T ss_pred EEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C
Confidence 346678888 666532 2245788988888888875 15566666654 7999999975 4
Q ss_pred EEEEeccCCcceEEEEEcCCCCEEEEEeCCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc-
Q 004327 513 VKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE- 588 (761)
Q Consensus 513 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG---~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~- 588 (761)
....+..|...|.+++|+||+++|++++.|+ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++.
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677778999999999999999999999885 999999998763 4567788899999999999888878876654
Q ss_pred -EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 589 -IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 589 -I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~La 664 (761)
|++||+.++++.....+...+.+++|+|++.+|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEE
Confidence 999999988876555566678999999999999988864 4 788889988764 34555777899999999999999
Q ss_pred EEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECCCCcEEEEccCCCCee
Q 004327 665 SVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVS 737 (761)
Q Consensus 665 sgs-D---g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~ 737 (761)
+++ + ..|++||+.++. + ..+..+. .+.+++|+|++++|++++.++ .|++||+.++....+..|.+.|.
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp EEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred EEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 887 4 389999998763 2 3344443 889999999999999998877 79999999888778899999999
Q ss_pred EEEEeCCCC
Q 004327 738 SLAASTVNG 746 (761)
Q Consensus 738 slafspdg~ 746 (761)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999754
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.2e-26 Score=246.74 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=198.0
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEc
Q 004327 429 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 508 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl 508 (761)
...++++|+.|+.+++| +..++.....+. ...|.++.|+|+ +++++.|++|++|+.
T Consensus 47 d~~~l~sg~~Dg~v~iw----------------d~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFT----------------QLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEEETTEEEEE----------------EESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCCEEEEECCCCcEEEE----------------ECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 34577888888887777 333333333322 356888889988 999999999999966
Q ss_pred C---------CCeEEEEec-cCCcceEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCC
Q 004327 509 E---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS 575 (761)
Q Consensus 509 ~---------t~~~~~~l~-~h~~~V~~v~fsp--dg~~Lasgs~DG~I~VWDl~t~~~~i~~~-~~h~~~V~sl~fsp~ 575 (761)
. +++.+..+. .|...|.+++|+| ++++|++++.||+|++||++++.. +..+ ..|...|.+++|+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD 181 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC
Confidence 5 445444443 6778999999999 999999999999999999998775 4444 445668999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeee-eEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCC
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKN 649 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~-~~~~~--~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~---h~~ 649 (761)
+ .+|++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |..
T Consensus 182 g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 182 S-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp S-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred C-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence 6 67779999999999999998877 55654 67899999999999999999 55999999998866544433 333
Q ss_pred CEE--EEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCcEEEEECC
Q 004327 650 QVH--SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 650 ~I~--sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp---dg~~L~sgs~dg~I~IwDl~ 722 (761)
.+. +++|+|++++|++++ |+.|+||++...... ... ..+..+.|.+ +...+++++.|+.+.++-..
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 443 699999999999976 889999999765321 111 4567788888 88899999999988887543
Q ss_pred C
Q 004327 723 E 723 (761)
Q Consensus 723 ~ 723 (761)
.
T Consensus 333 ~ 333 (343)
T 3lrv_A 333 N 333 (343)
T ss_dssp S
T ss_pred C
Confidence 3
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.8e-25 Score=249.61 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=218.9
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----eEEEEEc--CCCeEE--EEeccCCcceEEEEEcC--------------C
Q 004327 480 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 532 (761)
Q Consensus 480 ~~V~~lafSpdg~-~Lasgs----~Dg----~I~VWdl--~t~~~~--~~l~~h~~~V~~v~fsp--------------d 532 (761)
..|...+|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3577788888775 566776 467 8999999 888877 55888988888887764 2
Q ss_pred CCEEEEEeCC------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEE
Q 004327 533 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF 603 (761)
Q Consensus 533 g~~Lasgs~D------G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D---g~I~vWDl~t~~~~~~~ 603 (761)
+..|++++.+ +.|++||++... ...+.+|...|.+++|+|++..++ +++.+ ..|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5666666654 799999998533 677788999999999999987665 55545 49999999999887666
Q ss_pred ecCCCeeEEEEecCCCEEEEE-EcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEC
Q 004327 604 KCQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 676 (761)
Q Consensus 604 ~~~~~i~~l~fspd~~~Llag-s~dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl 676 (761)
.+...+.+++|+|++.+|++. +.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 666789999999999988844 4454 599999998876 56677888999999999999988877 33 7888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 677 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 677 ~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|++++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23344566788999999999999998875 48999999999887776665 8999999999999998887
Q ss_pred CC---eEEEcC
Q 004327 754 DK---CVKIWK 761 (761)
Q Consensus 754 DG---~I~IWd 761 (761)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 76 788885
No 128
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.3e-23 Score=225.49 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC-------CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEecC
Q 004327 480 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 551 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~-------Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWDl~ 551 (761)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+.+++|+|++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 568999999999988887643 457889999999966555 557999999999
Q ss_pred CCCceeEEeecCCC---------CeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCE
Q 004327 552 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 620 (761)
Q Consensus 552 t~~~~i~~~~~h~~---------~V~sl~fsp~g~~llasg-s~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~ 620 (761)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444544332 278899999988777666 458899999999999988887 4455889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 621 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+++++++++ ++.|.+||+.++ ..+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999998877764 456788999999999887776 589999999887 4444444333
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 695 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999888777 5789999999999988555556688999999999977766654
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=8.5e-24 Score=225.77 Aligned_cols=274 Identities=7% Similarity=0.132 Sum_probs=206.7
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCceeEEeec
Q 004327 485 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 485 lafSpdg~~-Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl~t~~~~i~~~~~ 562 (761)
..|.+++.+ +++++.++.|.+||+++++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6777789999999999999988887777777 9999999997777666 889999999987753566666
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 004327 563 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 637 (761)
Q Consensus 563 h~~~V~sl~fsp~g~~llasgs~D-g--~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~-I~IwDl~t 637 (761)
+..++.+++|+|+++.++ ++..+ + .|++||+.+++.+..+.....+.+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999987777 44444 3 899999999999998888788899999999987776655 477 99999875
Q ss_pred CeEE----EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004327 638 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 638 ~~~i----~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs 711 (761)
...+ .........+.+++|+|+|+++++++ ++.|++||+.++.....+..+.. ...+..++|+|+++++++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999766655 78999999988744222555553 46678899999999887776
Q ss_pred c-CCcEEEEECCCCcEE---EEccC----CCC---eeEEEEeCCCCEEEEEE-CCCeEEEcC
Q 004327 712 C-YETLELWNMTENKTL---TLSAH----DKL---VSSLAASTVNGMVASAS-HDKCVKIWK 761 (761)
Q Consensus 712 ~-dg~I~IwDl~~~~~~---~l~~h----~~~---V~slafspdg~~LaSgs-~DG~I~IWd 761 (761)
. ++.|.+||+.+++.. .+..+ ... +..++|+||+++|++++ .++.|+|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 568999999998873 11111 222 35689999999886665 467999996
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2e-25 Score=246.91 Aligned_cols=233 Identities=12% Similarity=0.099 Sum_probs=172.9
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCccccceecCCCc--eeEEEEEecCCCCCeEEEEEcC--------CCCEEEEEE
Q 004327 429 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF--TFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 498 (761)
Q Consensus 429 ~~~~i~~gs~d~~v~~~~s~~~~~~~d~~~r~~d~~~g~--~~~~v~~l~~H~~~V~~lafSp--------dg~~Lasgs 498 (761)
...++++++.|.++++| +...+. ....+..+.+|.+.|++++|+| |+++||+|+
T Consensus 100 ~~~~las~~~d~~v~lw----------------~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLI----------------ITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp EEEEEEEEETTSCEEEE----------------EEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCcEEEE----------------ECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 33567777777666665 444432 2234566889999999999998 889999999
Q ss_pred CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCcee--------------------
Q 004327 499 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL-------------------- 557 (761)
Q Consensus 499 ~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i-------------------- 557 (761)
.|++|+|||+.++..+..+..|...|.+++|+|++. +|++++.|++|++||+.++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999999999888888888999999999999874 89999999999999998764321
Q ss_pred ----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEEE
Q 004327 558 ----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRF 614 (761)
Q Consensus 558 ----~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-------------------~~i~~l~f 614 (761)
....+|...|.++.|.+.....+++++.|+.+++||+..+.....+... .......|
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 1224678889999998433456779999999999999876654433211 11222344
Q ss_pred ec-CCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 615 QP-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 615 sp-d~~~-Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
++ .++. +++++.||.|++||+.++..+..+..|...|.+++|+|||++|++++++.+.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 44 3344 445567999999999999888888889999999999999999999998778888764
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.2e-23 Score=224.16 Aligned_cols=266 Identities=9% Similarity=0.135 Sum_probs=197.2
Q ss_pred EEEEEECCCeEEEEEcC-CC--eEEEEeccCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecC--CCCce-eEEeecCCC
Q 004327 493 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 565 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~-t~--~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-G~I~VWDl~--t~~~~-i~~~~~h~~ 565 (761)
++++++.|+.|++||++ ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++ ++... +..+..+ .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 34444779999999995 33 333333 577789999999999999988887 999999998 44432 2344433 3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeE
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 640 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t~~~~~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~t-~~~ 640 (761)
.+.+++|+|++..+++++..++.|++||+. ..+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998888777778999999994 445555666666789999999999998888 789999999987 644
Q ss_pred EE----EEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEee---cC---CCceEEEEEeCCCCE
Q 004327 641 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELS---CT---GNKFHSCVFHPTFPS 706 (761)
Q Consensus 641 i~----~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~l~---~~---~~~I~sl~fspdg~~ 706 (761)
.. .+.. ....+.+++|+|++++|++++ ++.|++|++... ........+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776655 889999999642 1112222222 11 235678999999998
Q ss_pred EEEEE-cCCcEEEEECC--CCc--EE-EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEcC
Q 004327 707 LLVIG-CYETLELWNMT--ENK--TL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 761 (761)
Q Consensus 707 L~sgs-~dg~I~IwDl~--~~~--~~-~l~~h~~~V~slafspdg~~LaSgs-~DG~I~IWd 761 (761)
|+++. .++.|++||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88766 67899999998 332 33 333333 489999999999888888 689999993
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=6.7e-24 Score=228.06 Aligned_cols=225 Identities=11% Similarity=0.098 Sum_probs=167.5
Q ss_pred eEEEEEecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEEcCCCeEEEE-eccCCcceEEEEEcCCCCEEEEEeCCC
Q 004327 469 FTEFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWdl~t~~~~~~-l~~h~~~V~~v~fspdg~~Lasgs~DG 543 (761)
+.++..=.-|.+.|.+++|+|| +.++++++. .+.||++.+++.+.+ ..+ .|+
T Consensus 101 ~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g---------------------~d~ 157 (356)
T 2w18_A 101 LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTL---------------------SDQ 157 (356)
T ss_dssp CEEEEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSS---------------------TTC
T ss_pred eeeeeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccC---------------------CCC
Confidence 3444444456678999999999 899999884 477786544433333 123 466
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEecC----CCeeEEEEecC
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPR 617 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp--~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~----~~i~~l~fspd 617 (761)
.|++|++......+..+.+|...+..++|++ ....+|++++.|++|+|||++++++++.+..+ ..+.+++|+|+
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 6666666443334556678888888888888 23578889999999999999999999998732 24677899999
Q ss_pred CCEEE------------EEEcCCeEEEEECCCCeEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 618 LGRIL------------AAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 618 ~~~Ll------------ags~dg~I~IwDl~t~~~i~~l-----~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
+..++ +++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++ |++|+|||+.++
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC
Confidence 88764 4667899999999999887765 3676666555554 88899998 999999999988
Q ss_pred CCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 680 SKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 680 ~~~~~i~~l~~~~~~I~-sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
+++.++.+|...+. +++|+||+++|++|+.|++|+|||+
T Consensus 316 ---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 ---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 78889988877655 5899999999999999999999995
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1e-23 Score=243.83 Aligned_cols=268 Identities=9% Similarity=0.063 Sum_probs=215.4
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec--CCCCceeEEeecC
Q 004327 486 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 563 (761)
Q Consensus 486 afSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl--~t~~~~i~~~~~h 563 (761)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.. .+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3789999999999999999999999999999874433 899999999999999999999999999 6654 355565 4
Q ss_pred CCCeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEE-c
Q 004327 564 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 626 (761)
Q Consensus 564 ~~~V~sl~fsp----~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~------------~~i~~l~fspd~~~Llags-~ 626 (761)
...+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.++|++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55689999999 98877766667999999999999998887642 2578899999887766655 4
Q ss_pred CCeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEE
Q 004327 627 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 698 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~--~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~----~~~~I~sl 698 (761)
++.|.+||+.+.+.+. .+. +...+.+++|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7999999998764332 443 566788999999999877665 789999999987 56666553 33333333
Q ss_pred EEeCCCCEEEEEE--cCCcEEEEECCC-------CcEE-EEccCCCCeeEEEEeCCCCEEEEEE-------CCCeEEEcC
Q 004327 699 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 761 (761)
Q Consensus 699 ~fspdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~slafspdg~~LaSgs-------~DG~I~IWd 761 (761)
++|++..+++.+ .+++|.+||+.+ ++++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578855555554 478999999988 7777 7778888899999999999999987 278999997
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6.8e-24 Score=252.68 Aligned_cols=276 Identities=14% Similarity=0.096 Sum_probs=212.8
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----eEEEEEcCCCeEEEEeccCCc------------------------ceEEEE
Q 004327 479 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 528 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~-Dg-----~I~VWdl~t~~~~~~l~~h~~------------------------~V~~v~ 528 (761)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346999999999999999998 88 999999999988777755433 388999
Q ss_pred EcCCCCEEEEEeCCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 004327 529 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 607 (761)
Q Consensus 529 fspdg~~Lasgs~DG~I~VWDl~t~~-~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~ 607 (761)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999986 899999999762 014556778888999999999876664 44 5689999999887765544322
Q ss_pred C-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 004327 608 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 637 (761)
Q Consensus 608 ~-----------------i~~l~fspd~~~Llags~dg---------------------------------~I~IwDl~t 637 (761)
. +..+.|+||+++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47799999999999988765 889999998
Q ss_pred -CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEECCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 004327 638 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 704 (761)
Q Consensus 638 -~~~i~~l~--~h~~~I~sl~~spdg~~Lasgs------Dg~I~IWdl~s~~~~~~i~~l~~~~~----~I~sl~fspdg 704 (761)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 77654433 37778999999 9999988764 2479999998873 3333333322 34678999999
Q ss_pred CEEEEEEcCCcEEEEECC-CCcEEEEccCCCCeeEE-EEeCCCCEEEE-EECCC--eEEEcC
Q 004327 705 PSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~-~~~~~~l~~h~~~V~sl-afspdg~~LaS-gs~DG--~I~IWd 761 (761)
+++++++.++.++||.+. ++....+..|...|.++ .|+|+++.|+. ++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 988888888866666553 23355777888889887 59999987754 44555 888884
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=6.8e-23 Score=217.85 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=206.7
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCc--ceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCceeEEee-cC----
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 563 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~--~V~~v~fspdg~~La-sgs~DG~I~VWDl~t~~~~i~~~~-~h---- 563 (761)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ ++..++.|.+||+.+++. +..+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999998887753322 488999999998765 455678999999988764 43333 22
Q ss_pred CCCeEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 564 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 564 ~~~V~sl~fsp~g~~llasgs-----------~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.....+..++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226788999999877665531 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEECCCCCCceeEEE
Q 004327 633 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 633 wDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg-----------------------~I~IWdl~s~~~~~~i~~ 687 (761)
||+.+++.+..+..+... ..+.|+|++.+++... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 999999988777654311 1237899998766554 22 4689999886432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999998888 6899999999998875544556789999999999999999999999996
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.1e-22 Score=214.53 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=193.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC-CeEEEEEcC--CCe--EEEEeccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEec
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE--SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 550 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWdl~--t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl 550 (761)
.|...+.+++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999999999999998887 999999997 444 344555444 7899999999998877765 889999999
Q ss_pred CCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE----Ee--cCCCeeEEEEecCCCEE
Q 004327 551 ENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRI 621 (761)
Q Consensus 551 ~t~~--~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~----~~--~~~~i~~l~fspd~~~L 621 (761)
..+. .....+. ....+.+++|+|+++.+++++..++.|++||+.+ ++.... +. ....+..++|+|++.++
T Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 5221 1233333 3346899999999887776665899999999987 654322 22 23467889999999988
Q ss_pred EEEE-cCCeEEEEECCC--CeE--EEEEcC---C---CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEE
Q 004327 622 LAAA-IENYISILDVET--QVC--RLKLQG---H---KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHE 687 (761)
Q Consensus 622 lags-~dg~I~IwDl~t--~~~--i~~l~~---h---~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~ 687 (761)
++++ .++.|.+||++. ++. ...+.. . ...+.+++|+|++++|+++. ++.|++||+... .....+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 7776 689999999953 322 222221 1 23677899999999887554 889999999832 12244555
Q ss_pred eecCCCceEEEEEeCCCCEEEEEE-cCCcEEEE--ECCCCcEE--EEccCCCCeeEEEEeCCCC
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTL--TLSAHDKLVSSLAASTVNG 746 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~--~l~~h~~~V~slafspdg~ 746 (761)
+..+.. +..++|+|++++|++++ .++.|.+| |..+++.. ..........+++|.++.+
T Consensus 273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 554444 88999999999999888 57899999 44566543 2222335677888887654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.7e-23 Score=215.48 Aligned_cols=253 Identities=11% Similarity=0.090 Sum_probs=194.9
Q ss_pred EEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC-CCceeEEeecC-CCCeEEEEEc
Q 004327 496 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 573 (761)
Q Consensus 496 sgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t-~~~~i~~~~~h-~~~V~sl~fs 573 (761)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ...+..+ ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 34578999999999988764 446888999999999999999987 78999999998 653 4444455 3678999999
Q ss_pred CCCCcEEEEEe-CC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEEC--CCCeEEEEEcCC
Q 004327 574 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGH 647 (761)
Q Consensus 574 p~g~~llasgs-~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Ll-ags~dg~I~IwDl--~t~~~i~~l~~h 647 (761)
|++..+++++. .+ ..|++|++.++. ...+.....+..++|+|++.+|+ ++..++.+.+|++ .++. ...+..+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 99876665442 23 455555555554 34444455688899999999887 5667898888885 3443 4556668
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 004327 648 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E 714 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----------g 714 (761)
...+.+++|+|++++|++++ ++.+++|++.... ..+..+..+...+..++|+|++++|++++.+ .
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 88999999999999887665 7889999886321 3455666677788999999999999988876 4
Q ss_pred cEEEEECCCCcEE---EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004327 715 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 715 ~I~IwDl~~~~~~---~l~~h~~~V~slafspdg~~LaSgs~DG 755 (761)
.|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6999999988654 3447888999999999999998887654
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=3.8e-23 Score=214.33 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=196.3
Q ss_pred CCCccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC-CeEEEEeccC-CcceEEEEEc
Q 004327 453 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFS 530 (761)
Q Consensus 453 ~~d~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t-~~~~~~l~~h-~~~V~~v~fs 530 (761)
..+....+|+...+. ...+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+
T Consensus 19 ~~~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTTE----EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCCc----eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 345556666666553 234556888999999999999999987 78999999999 8777666665 3678999999
Q ss_pred CCCCEEEEEe--CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEecC
Q 004327 531 PSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQ 606 (761)
Q Consensus 531 pdg~~Lasgs--~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl--~t~~~~~~~~~~ 606 (761)
|++++|++++ .++.+.||.++........+..+. .+.+++|+|++..+++++..++.+++|++ .++.........
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 9999999998 345556655543222244454443 48999999999888888888998999985 445554444555
Q ss_pred CCeeEEEEecCCCEEEEEEc-CCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEE
Q 004327 607 SGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVR 672 (761)
Q Consensus 607 ~~i~~l~fspd~~~Llags~-dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D-----------g~I~ 672 (761)
..+.++.|+|++..+++++. ++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + ..|+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 67899999999998887774 8888898876 4555667777888899999999999998877 4 4699
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004327 673 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 673 IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg 714 (761)
+||+.++.. ..+..+..+...+..++|+|++++|++++.+.
T Consensus 253 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999987633 44555557788899999999999999888765
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=7.2e-23 Score=243.84 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=204.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
.|.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999999873 4455677888999999999999999987 46899999987553 33
Q ss_pred EeecCCCC----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 004327 559 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 590 (761)
Q Consensus 559 ~~~~h~~~----------------V~sl~fsp~g~~llasgs~Dg--------------------------------~I~ 590 (761)
....+... +.+++|+|+|+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544321 789
Q ss_pred EEECCC-CeeeeEEe---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEcCCCC----CEEEEEEc
Q 004327 591 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 657 (761)
Q Consensus 591 vWDl~t-~~~~~~~~---~~~~i~~l~fspd~~~Llags~-----dg~I~IwDl~t~~~i~~l~~h~~----~I~sl~~s 657 (761)
+||+.+ ++...... ....+..++| |++++|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77654432 2345789999 99999998775 46899999999987776665443 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---cEEEEECCC-CcEE-EEc
Q 004327 658 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NKTL-TLS 730 (761)
Q Consensus 658 pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl-~fspdg~~L~sgs~dg---~I~IwDl~~-~~~~-~l~ 730 (761)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +... .+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888887 8877888775322 3 56666677778777 5999999887666544 788998753 4433 443
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECC----CeEEEc
Q 004327 731 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 760 (761)
Q Consensus 731 ~h~~~V~slafspdg~~LaSgs~D----G~I~IW 760 (761)
. ...+.+++|+||+++|+....+ +.+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766543 345555
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5e-22 Score=211.97 Aligned_cols=266 Identities=11% Similarity=0.110 Sum_probs=197.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCeE-EEEeccCCcceEEEEEcCCCCEEEEEeCCC---eEEEEe
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWD 549 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWdl~t~~~-~~~l~~h~~~V~~v~fspdg~~Lasgs~DG---~I~VWD 549 (761)
+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||
T Consensus 36 ~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 36 ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEE
T ss_pred EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEE
Confidence 34455666 9999999997776665 89999999999987 777777777666699999999999555553 899999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc-EEEEECCCCeee-----eEEecCCCeeEEEEecCCCEEEE
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~-I~vWDl~t~~~~-----~~~~~~~~i~~l~fspd~~~Lla 623 (761)
+.+++. +..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+ ..+.....+..++|+|+++++++
T Consensus 115 ~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 115 FLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 987653 455543 4457999999999888888787788 999999764332 22334456889999999998777
Q ss_pred EEc-CCeEEEEECCCCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecC----CC
Q 004327 624 AAI-ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN 693 (761)
Q Consensus 624 gs~-dg~I~IwDl~t~~~---i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~----~~ 693 (761)
++. ++.|.+||+.+++. +..+.. ...+.+++|+|+|++|+++. ++.|.+||+.++.. ..+..+... ..
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPR 270 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCG
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCC
Confidence 664 78999999998877 777764 46678999999999887765 67899999987632 113333222 11
Q ss_pred ---ceEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEEEEccCCCCeeEEEEeCCC
Q 004327 694 ---KFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVN 745 (761)
Q Consensus 694 ---~I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~~~V~slafspdg 745 (761)
....++|+|++++|++++.++ .|.+||+.+.....+...+..-....++|+.
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 124589999999998877754 9999999887665555544433334445553
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.3e-22 Score=235.55 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=205.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEEEEeC---CCeEEEEecCC-
Q 004327 479 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN- 552 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~-Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~---DG~I~VWDl~t- 552 (761)
..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 456999999999999999887 9999999997766554 44454 68999999999 77777775 45566665543
Q ss_pred -CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC----
Q 004327 553 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---- 627 (761)
Q Consensus 553 -~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d---- 627 (761)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.+++......... .+++|+|||++|++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 22222 33322 2345678899987766565556666799999988777666544 889999999999988876
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEECCCCCCceeEEEeecCCCceEEEE-----
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV----- 699 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg--~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~----- 699 (761)
+.|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccc
Confidence 78999999988755 5677888999999999999999766 77 8999999876 333 5555666666666
Q ss_pred ---EeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCe---EEEcC
Q 004327 700 ---FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 761 (761)
Q Consensus 700 ---fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~---I~IWd 761 (761)
|+|||..+++++.++.++||++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888999999999999 65543 345779999999 9999998887744 65554
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.3e-23 Score=247.29 Aligned_cols=273 Identities=13% Similarity=0.158 Sum_probs=205.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCc---ceEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 548 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~---~V~~v~fspdg~~Lasgs~D---------G~I~VW 548 (761)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3678899999998776 7899999999999988888877765 49999999999999999874 788899
Q ss_pred ecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCC----------------
Q 004327 549 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG---------------- 608 (761)
Q Consensus 549 Dl~t~~~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~---------------- 608 (761)
|+.++.. ..+. +|...+.+++|+|+|+.++++. ++.|++||+.+++....... ...
T Consensus 97 d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce--EeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9998764 3333 3445589999999987776544 37999999998877665543 222
Q ss_pred --eeEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEcCC-----
Q 004327 609 --ATQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH----- 647 (761)
Q Consensus 609 --i~~l~fspd~~~Llags~dg----------------------------------~I~IwDl~t~~~i~~l~~h----- 647 (761)
+.++.|+||+++|++++.++ .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 27899999999999987653 7999999988765556544
Q ss_pred -CCCEEEEEEcCCCCEEEEEe-C----CeEEEEECCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC
Q 004327 648 -KNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE 714 (761)
Q Consensus 648 -~~~I~sl~~spdg~~Lasgs-D----g~I~IWdl~s~~~~~~i~~l~~-~~~~I----~sl~fspdg~~L~sg--s~dg 714 (761)
...+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 56789999999999887765 2 379999998873 3333222 22333 378999999987764 3455
Q ss_pred ------cEEEEE-CCCCc---EEEEccCCCCeeE-EEEeCCCCEEEEEECC---CeEEEcC
Q 004327 715 ------TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 761 (761)
Q Consensus 715 ------~I~IwD-l~~~~---~~~l~~h~~~V~s-lafspdg~~LaSgs~D---G~I~IWd 761 (761)
.|++|| ..++. ...+..+...+.. ++|+||+++|+..+.+ +.++||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577788 45555 4444444455554 6999999998876655 7888884
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.5e-22 Score=249.40 Aligned_cols=291 Identities=8% Similarity=-0.013 Sum_probs=231.8
Q ss_pred ccccceecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCC-CeEEEEeccCCcceEEEEEcCCCC
Q 004327 456 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLS 534 (761)
Q Consensus 456 ~~~r~~d~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t-~~~~~~l~~h~~~V~~v~fspdg~ 534 (761)
...++|....+. ....+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|||+
T Consensus 183 ~~~~lw~~~~~~---~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNSG---AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEETT---EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCCC---CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 345566544332 23445899999999999998 6777888889999998653 44555666665 467789999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeec-----------CCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 602 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~-----------h~~~V~sl~fs-p~g~~llasgs~Dg~I~vWDl~t~~~~~~ 602 (761)
+|+++. ++.|++||+.... +..+.. |...+.+++|+ |++..+++++ ++.|++|++..+.....
T Consensus 258 ~la~~~-~~~i~~~d~~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFSK-GGSIYIFNPDTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEEE-TTEEEEECTTTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEEe-CCEEEEecCCceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 998884 8999999995432 334443 34478999999 9987666544 78999999998776554
Q ss_pred EecCC-CeeEEEEecCCCEEEEEEcCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 603 FKCQS-GATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 603 ~~~~~-~i~~l~fspd~~~Llags~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
..+.. .+..+.|+ ++..|++++.++.|. +||+.+++... +.+|...+.+++|+|||++|++++ ++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 44444 67889999 989999988888899 99998876554 347888999999999999999988 889999999887
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEE
Q 004327 680 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 680 ~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg----------~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~La 749 (761)
.....+..+...+..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 44555556788889999999999999888754 89999999998778888999999999999999999
Q ss_pred EEECCCeEEEcC
Q 004327 750 SASHDKCVKIWK 761 (761)
Q Consensus 750 Sgs~DG~I~IWd 761 (761)
+++.++...+|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999888777774
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.3e-22 Score=234.57 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=206.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC-----CC
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PD 554 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t-----~~ 554 (761)
..|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 59999999998876544 4566779999999999999985 689999999987 55
Q ss_pred ceeEEeecCCCC--------------eEEEEEcCCCCcEEEEEe--------------------------------CCCc
Q 004327 555 YSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNSE 588 (761)
Q Consensus 555 ~~i~~~~~h~~~--------------V~sl~fsp~g~~llasgs--------------------------------~Dg~ 588 (761)
. ......+... +.+++|+|+++.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 3 3333333332 488999999877765541 3467
Q ss_pred EEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEcC-CCC---CEEEEE
Q 004327 589 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSVC 655 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~Llags~dg-----~I~IwDl~t~-~~i~~l~~-h~~---~I~sl~ 655 (761)
|++||+.+++...... ....+..++|+|++++|++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999888655442 234578999999999999988765 8999999998 43333322 222 246789
Q ss_pred EcC--CCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----cEEEEECCCCc
Q 004327 656 WNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTENK 725 (761)
Q Consensus 656 ~sp--dg~~Lasgs-Dg~I~IWdl~-s~~~~~~i~~l~~~~~~I~s-l~fspdg~~L~sgs~dg-----~I~IwDl~~~~ 725 (761)
|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.+. .|+.||+.+++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 999998888 8888888876 33 456666666677776 79999999888777654 67777887776
Q ss_pred EEEEccCCCCeeEEEEeCCCCEEEEEECC----CeEEEcC
Q 004327 726 TLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 761 (761)
Q Consensus 726 ~~~l~~h~~~V~slafspdg~~LaSgs~D----G~I~IWd 761 (761)
...+ .|...+.+++|+||+++|+.++.+ +.|++||
T Consensus 394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4444 477789999999999988776543 5699985
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=9.3e-21 Score=204.20 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=183.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEec
Q 004327 477 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 550 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl 550 (761)
.+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446688899999999 555544 6899999998765 4445556777899999999999998888 6799999999
Q ss_pred CCCCc-e-eEEeec---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--Ee--cCCCeeEEEE
Q 004327 551 ENPDY-S-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 614 (761)
Q Consensus 551 ~t~~~-~-i~~~~~---------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-t~~~~~~--~~--~~~~i~~l~f 614 (761)
..... . +..+.. +...+.+++|+|+++ +++++..++.|++|++. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1 222221 122488999999988 88777788999999998 5544322 22 2235788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCC
Q 004327 615 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 681 (761)
Q Consensus 615 spd~~~Llags-~dg~I~IwDl~t--~~~--i~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~ 681 (761)
+|+++++++++ .++.|.+|+++. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 478999999874 543 33333322 3588999999999875544 78999999974333
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEE--ECCCCcEE
Q 004327 682 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 727 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~Iw--Dl~~~~~~ 727 (761)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 35566666666678899999999999998876 789999 55667665
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=8.3e-21 Score=204.59 Aligned_cols=267 Identities=11% Similarity=0.100 Sum_probs=185.7
Q ss_pred EEEEEE----CCCeEEEEEc--CCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCc-eeEEee
Q 004327 493 LLATGG----HDKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFT 561 (761)
Q Consensus 493 ~Lasgs----~Dg~I~VWdl--~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~---DG~I~VWDl~t~~~-~i~~~~ 561 (761)
.|++|+ .++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|.+||+.++.. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 445553 2456777755 4565443 3334556788899999999 555544 68999999976543 233445
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ce--eeeEEecC----------CCeeEEEEecCCCEEEEEEcCC
Q 004327 562 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIEN 628 (761)
Q Consensus 562 ~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~--~~~~~~~~----------~~i~~l~fspd~~~Llags~dg 628 (761)
.+...+..++|+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 57778899999999887776666889999999963 33 23333221 1377899999999444444578
Q ss_pred eEEEEECC-CCeEE--EEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeecCC------Cce
Q 004327 629 YISILDVE-TQVCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKF 695 (761)
Q Consensus 629 ~I~IwDl~-t~~~i--~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~-~~~~~i~~l~~~~------~~I 695 (761)
.|.+||+. +++.. ..+.. ....+..++|+|||++|++++ ++.|.+|++... .....+..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 55432 22232 234678899999999777765 789999998752 1112233333222 458
Q ss_pred EEEEEeCCCCEEEEEE-cCCcEEEEECCCC---cEE-EEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEc
Q 004327 696 HSCVFHPTFPSLLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 760 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs-~dg~I~IwDl~~~---~~~-~l~~h~~~V~slafspdg~~LaSgs~D-G~I~IW 760 (761)
..++|+|+|++|++++ .++.|.+||+... +.+ .+..+...+.+++|+||+++|++++.+ +.|.||
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 8899999999886555 5789999999732 223 444566778999999999988888764 899999
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.7e-21 Score=242.03 Aligned_cols=289 Identities=9% Similarity=0.057 Sum_probs=223.4
Q ss_pred cccceecCCCceeEEEEEecCCCCCe-------EEEEEcCCCCEEEEEECC------CeEEEEEcCCCeEE---------
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK--------- 514 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~~V-------~~lafSpdg~~Lasgs~D------g~I~VWdl~t~~~~--------- 514 (761)
.+.+|+...+. ...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 81 ~i~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~ 156 (1045)
T 1k32_A 81 DLYFYNGENGE----IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH 156 (1045)
T ss_dssp EEEEEETTTTE----EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred eEEEEECCCCC----eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence 44556665543 45678888888 999999999977777754 35788887655422
Q ss_pred ----------------------------------------EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 515 ----------------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 515 ----------------------------------------~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
..+.+|...+.++.|+++ .++++++.|+.+.||.++...
T Consensus 157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS
T ss_pred eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC
Confidence 123456778889999888 667777888999999876433
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEe-cCCCEE
Q 004327 555 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQ-PRLGRI 621 (761)
Q Consensus 555 ~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~------------~~i~~l~fs-pd~~~L 621 (761)
.....+..|. .+..++|+|++..++++ .++.|++||+...... .+... ..+..++|+ |++.++
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l 311 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI 311 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEE
Confidence 3355666565 46778999998777654 3899999999544333 33321 258899999 999988
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-CCeEE-EEECCCCCCceeEEEeecCCCceEEE
Q 004327 622 LAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 622 lags~dg~I~IwDl~t~~~i~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~-IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
++++ ++.|++|++.++.... +..|.. .+.+++|+ ||+.|+.++ +..+. +||+.++. ...+..+...+..+
T Consensus 312 a~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFAM 384 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEEE
T ss_pred EEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----ceEecCCccceeee
Confidence 8877 8899999999877544 566777 89999999 999999888 66788 88987652 23344667889999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-cCCCCeeEEEEeCCCCEEEEEECCC----------eEEEcC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK 761 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~slafspdg~~LaSgs~DG----------~I~IWd 761 (761)
+|+|||++|++++.++.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999999999999999999887554 8999999999999999999887654 899996
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.8e-21 Score=230.89 Aligned_cols=290 Identities=12% Similarity=0.073 Sum_probs=202.4
Q ss_pred cccceecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEECC---------CeEEEEEcCCCeEEEEe---ccCC
Q 004327 457 VGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTL---EEHT 521 (761)
Q Consensus 457 ~~r~~d~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~D---------g~I~VWdl~t~~~~~~l---~~h~ 521 (761)
..++|+..++.. ...+.+|.. .|.+++|||||++||+++.+ +.|++||+.+++. ..+ ..|.
T Consensus 38 ~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~ 113 (723)
T 1xfd_A 38 TVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSN 113 (723)
T ss_dssp CEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCS
T ss_pred CEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccc
Confidence 445556555532 344556654 49999999999999999874 7888999998876 333 3455
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCC------------------eEEEEEcCCCCcEEEEE
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT------------------VMSLDFHPSKEDLLCSC 583 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~------------------V~sl~fsp~g~~llasg 583 (761)
..+.+++|+|||++|++++. +.|++||+.++.. ......+... +.+++|+|+|+.++++.
T Consensus 114 ~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 56899999999999999986 7999999998664 4444433333 37899999987776554
Q ss_pred eCC---------------------------------CcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEE
Q 004327 584 DNN---------------------------------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 623 (761)
Q Consensus 584 s~D---------------------------------g~I~vWDl~t~~~~~~~~~-------~~~i~~l~fspd~~~Lla 623 (761)
..+ ..|++||+.++++...+.. ...+..+.|+||+..+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 322 2799999998876555543 235788999999988766
Q ss_pred EEcC----CeEEEEECCCCeEEEEEcC-CCCCEE----EEEEcCCCCEEEEE-e--CC------eEEEEECCCCCCceeE
Q 004327 624 AAIE----NYISILDVETQVCRLKLQG-HKNQVH----SVCWNTSGEYLASV-S--DE------LVRVWSIGSGSKGECI 685 (761)
Q Consensus 624 gs~d----g~I~IwDl~t~~~i~~l~~-h~~~I~----sl~~spdg~~Lasg-s--Dg------~I~IWdl~s~~~~~~i 685 (761)
.... ..|++||+.++++...+.. +...+. .++|+|||++|+.. + ++ .|++||+..+....+.
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce
Confidence 6543 5799999999887665543 334443 78999999977654 3 66 4667773222210012
Q ss_pred EEeecCCCceEE-EEEeCCCCEEEEEEcC---CcEEEEECCCC---cEEEEcc---CCCCeeEEEEeCCCCEEEEEE
Q 004327 686 HELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA---HDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 686 ~~l~~~~~~I~s-l~fspdg~~L~sgs~d---g~I~IwDl~~~---~~~~l~~---h~~~V~slafspdg~~LaSgs 752 (761)
..+......+.. ++|+|++++|++.+.+ +.++||++... ....+.. |...+..++|+||+++|+...
T Consensus 352 ~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 333333344544 6999999999887776 68899987543 2223333 677799999999999877654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.8e-21 Score=204.33 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=185.6
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEEcCCCeEEEEeccC-----CcceEEEEEcCCCCEEEEEe------------CC
Q 004327 481 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------AD 542 (761)
Q Consensus 481 ~V~~lafSpdg~~La-sgs~Dg~I~VWdl~t~~~~~~l~~h-----~~~V~~v~fspdg~~Lasgs------------~D 542 (761)
.+.+++|+|||++|+ ++..++.|.+||+.+++.+..+... ...+.+++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 488899999998765 4556789999999999888766532 22678899999999998886 57
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Ll 622 (761)
+.|.+||+.++.. +..+.. ...+.+++|+|+++.++++ ++.|++||+.+++.+..+........+.|+|++..++
T Consensus 115 ~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 115 TRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189 (337)
T ss_dssp CEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred ceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence 9999999987653 444443 4568889999998777655 6889999999999887776544223447889888766
Q ss_pred EEEcCC------------------------eEEEEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 623 AAAIEN------------------------YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 623 ags~dg------------------------~I~IwDl~t~~~i-~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
+.+..+ .|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~ 268 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLE 268 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETT
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECC
Confidence 554322 4789999998764 3344566788999999999999888 7999999998
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 678 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 678 s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
++ ..+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 269 ~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 269 KN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 76 45555443 356789999999999999988999999999998877
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=4.5e-21 Score=205.03 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=194.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCceeEEee
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~La-sgs~DG~I~VWDl~t~~~~i~~~~ 561 (761)
.++++++++++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45788889999999999999999999999888876543 2578999999998665 445689999999987654 33333
Q ss_pred -cC-----CCCeEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCe---eeeEEecCCCeeEEEEecCCCEE
Q 004327 562 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 562 -~h-----~~~V~sl~fsp~g~~llasgs~-----------Dg~I~vWDl~t~~---~~~~~~~~~~i~~l~fspd~~~L 621 (761)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2337889999998777655533 4899999998843 344555666788999999998 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 004327 622 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 675 (761)
Q Consensus 622 lags~dg~I~IwDl~t~~~i~~l~~h~~------------------------~I~sl~~spdg~~Lasgs--Dg~I~IWd 675 (761)
+++ ++.|++||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988877754320 344567766543221111 11222355
Q ss_pred CCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 676 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 676 l~s~~~~~~i~~l~~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 54432 11222233566788999999 99988888 889999999999887544455668899999999988888889
Q ss_pred CeEEEcC
Q 004327 755 KCVKIWK 761 (761)
Q Consensus 755 G~I~IWd 761 (761)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=6.4e-21 Score=208.06 Aligned_cols=287 Identities=11% Similarity=0.063 Sum_probs=207.7
Q ss_pred EEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC
Q 004327 471 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 542 (761)
Q Consensus 471 ~v~~l~~H~~~V~~-----lafSpdg~~Lasgs~-Dg--~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 542 (761)
++..+..|...+.. .+|+|||++||.++. ++ .|.+||+.+++......++...+..++|+||++.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556677766666 899999999999887 66 48889999998887777777666678999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCee
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 599 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~--fsp~g~~llasg---------------------s~Dg~I~vWDl~t~~~ 599 (761)
+.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998764 444555555554444 478876555321 2346899999999987
Q ss_pred eeEEecCCCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC--CCEEEEEEcCCCCEEEEEe--C
Q 004327 600 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D 668 (761)
Q Consensus 600 ~~~~~~~~~i~~l~fsp-d~~~Llags~d------g~I~IwDl~t~~~i~~l~~h~--~~I~sl~~spdg~~Lasgs--D 668 (761)
.........+..+.|+| +++.|+.+..+ ..|.++|+..+.... +..+. ..+..++|+|||+.|+..+ +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCC
Confidence 77777777789999999 99888887763 378888987665433 33333 3578899999999776544 3
Q ss_pred C----eEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEE---------cCCcEEEEECCCCcEEEEccC
Q 004327 669 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIG---------CYETLELWNMTENKTLTLSAH 732 (761)
Q Consensus 669 g----~I~IWdl~s~~~~~~i~~l~~~~~~---I~sl~fspdg~~L~sgs---------~dg~I~IwDl~~~~~~~l~~h 732 (761)
+ .|++||+.++.. ..+..+...... ...+.|+|||+.|++.. .+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 3 399999988743 233333221000 11137999999888653 345899999999888777777
Q ss_pred CC-----------CeeEEEEeCCCCEEEEEE-CCCeEEEc
Q 004327 733 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW 760 (761)
Q Consensus 733 ~~-----------~V~slafspdg~~LaSgs-~DG~I~IW 760 (761)
.. .+.+++|+|||++|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688999999999887666 57777776
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=9e-20 Score=197.81 Aligned_cols=269 Identities=12% Similarity=0.077 Sum_probs=193.4
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEEcCC--Ce--EEEEeccCCcceEEEEEcCCCCEEEEEe
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSS 540 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D----g~I~VWdl~t--~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs 540 (761)
+..+..+ |...+..++|+|||++|++++.+ +.|.+|+++. ++ .+..+..+...+..+++ ++++|++++
T Consensus 41 ~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~ 116 (361)
T 3scy_A 41 SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN 116 (361)
T ss_dssp EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence 3344444 67778899999999999999886 7999998865 43 33444445667788888 788877776
Q ss_pred -CCCeEEEEecCCCCcee--EE---eec--------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------e
Q 004327 541 -ADRTVRVWDTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------C 599 (761)
Q Consensus 541 -~DG~I~VWDl~t~~~~i--~~---~~~--------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-------~ 599 (761)
.++.|.+|++....... .. ..+ +...+.+++|+|+++.+++++..++.|++|++.... .
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 57899999997543211 11 111 123358899999998888777778999999987543 1
Q ss_pred -------eeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEEc---CCCCCEEEEEEcCCCCEEEEE
Q 004327 600 -------AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 600 -------~~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~--i~~l~---~h~~~I~sl~~spdg~~Lasg 666 (761)
.........+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 11223345678999999999888888 589999999987754 33332 234557899999999998777
Q ss_pred e-C--CeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCcEEEE--ECCCCcEEEEc--cCCCCee
Q 004327 667 S-D--ELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVS 737 (761)
Q Consensus 667 s-D--g~I~IWdl~s-~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~~l~--~h~~~V~ 737 (761)
. + +.|.+|++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..++++..+. .+...+.
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 6 5 6899999962 222234555554 56788999999999999998 46788885 55577766443 3456789
Q ss_pred EEEEe
Q 004327 738 SLAAS 742 (761)
Q Consensus 738 slafs 742 (761)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99886
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=3.9e-21 Score=227.75 Aligned_cols=262 Identities=10% Similarity=0.028 Sum_probs=190.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE-EEeccCC-----------------cceEEEEEcCCCCEEEEEeCCC
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHT-----------------QWITDVRFSPSLSRLATSSADR 543 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~-~~l~~h~-----------------~~V~~v~fspdg~~Lasgs~DG 543 (761)
+..+.|. |..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|| ..++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557888 66777777777 8 9999998873 3333332 46999999999 6666664 59
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----CeeeeEEecCCC----------
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSG---------- 608 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-----~~~~~~~~~~~~---------- 608 (761)
.|++||+.++. ...+..+...+.+++|+|+|+.++++ .++.|++||+.+ ++..........
T Consensus 102 ~i~~~d~~~~~--~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARK--VTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTE--EEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCc--eEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 99999998754 44555677789999999998776653 479999999998 776654433222
Q ss_pred -----eeEEEEecCCCEEEEEE---------------------------------cCCeEEEEECCCCeEEEEEc--CCC
Q 004327 609 -----ATQMRFQPRLGRILAAA---------------------------------IENYISILDVETQVCRLKLQ--GHK 648 (761)
Q Consensus 609 -----i~~l~fspd~~~Llags---------------------------------~dg~I~IwDl~t~~~i~~l~--~h~ 648 (761)
+.++.|+||+++|++++ .+..|++||+.+++...... .|.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 47899999999999987 34679999999987655442 466
Q ss_pred CCEEEEEEcCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCC---ceEEEEEeC--CCCEEEEEEcCCcEE
Q 004327 649 NQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGN---KFHSCVFHP--TFPSLLVIGCYETLE 717 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg-----~I~IWdl~s~~~~~~i~~l~~~~~---~I~sl~fsp--dg~~L~sgs~dg~I~ 717 (761)
..+.+++|+|||++|++++ ++ .|++||+.++.....+... .... .+..++|+| ++++++++..++.++
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 7899999999999988876 65 8999999886322222221 1221 246789999 999888888888888
Q ss_pred EEECC-CCc-EEEEccCCCCeeE-EEEeCCCCEEEEEECC
Q 004327 718 LWNMT-ENK-TLTLSAHDKLVSS-LAASTVNGMVASASHD 754 (761)
Q Consensus 718 IwDl~-~~~-~~~l~~h~~~V~s-lafspdg~~LaSgs~D 754 (761)
||++. ++. ...+..|...+.+ ++|+|+++.|+.++.+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 88764 444 4466778778877 7999999987766544
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=7.5e-20 Score=196.15 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=190.6
Q ss_pred CcceEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004327 521 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 593 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~-------DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD 593 (761)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+..++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 356889999999999888874 56899999998764 444443 345788999999988888888889999999
Q ss_pred CCCCeeeeEEecCC----------CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC
Q 004327 594 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 661 (761)
Q Consensus 594 l~t~~~~~~~~~~~----------~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~ 661 (761)
+.+++.+..+.... .+.++.|+|+++++++++. ++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888877543 1678999999998888873 78899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEccCCCC
Q 004327 662 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 735 (761)
Q Consensus 662 ~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~----~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~ 735 (761)
+|++++ ++.|.+||+.++ ..+..+.. +...+..++|+|+++++++++.+ +.|++||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999887 45544443 45567889999999988888765 799999999998873332222
Q ss_pred eeEEEEeCCCCEEEEEE-CCCeEEEcC
Q 004327 736 VSSLAASTVNGMVASAS-HDKCVKIWK 761 (761)
Q Consensus 736 V~slafspdg~~LaSgs-~DG~I~IWd 761 (761)
..+++|+|++++|++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999666555 689999996
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.4e-19 Score=196.18 Aligned_cols=267 Identities=9% Similarity=0.075 Sum_probs=188.2
Q ss_pred CCCEEEEEEC----CCeEEEEEc--CCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC----CeEEEEecCCC--Cc-e
Q 004327 490 DGKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 556 (761)
Q Consensus 490 dg~~Lasgs~----Dg~I~VWdl--~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D----G~I~VWDl~t~--~~-~ 556 (761)
...++++|+. ++.|.+|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|+++.. .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3445666643 568999866 4555433222267778899999999999999886 79999998764 21 1
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----EEec-----------CCCeeEEEEecCCCEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKC-----------QSGATQMRFQPRLGRI 621 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~----~~~~-----------~~~i~~l~fspd~~~L 621 (761)
+.....+......+++ +++.++++...++.|.+|++.....+. .+.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2233335566777888 667777777678999999997543322 1111 1234789999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeE
Q 004327 622 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 622 lags~-dg~I~IwDl~t~~-------~------i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i 685 (761)
++++. ++.|.+|++.... . ......+...+.+++|+|||+++++++ ++.|.+|++.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122233456788999999999887776 78999999986521 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CcEEEEECC--CCcEE---EEccCCCCeeEEEEeCCCCEEEEEE-CC
Q 004327 686 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HD 754 (761)
Q Consensus 686 ~~l~---~~~~~I~sl~fspdg~~L~sgs~d--g~I~IwDl~--~~~~~---~l~~h~~~V~slafspdg~~LaSgs-~D 754 (761)
..+. .+......++|+|++++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+||+++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 3322 233457899999999999888776 789999985 45532 2223 56789999999999888888 67
Q ss_pred CeEEEc
Q 004327 755 KCVKIW 760 (761)
Q Consensus 755 G~I~IW 760 (761)
+.|.||
T Consensus 328 ~~v~v~ 333 (361)
T 3scy_A 328 NVIQIF 333 (361)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 899996
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2.5e-20 Score=209.41 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC-----------eEE-----EEeccCCcceEEEEEcCCCCEEE----E
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 538 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-----------~~~-----~~l~~h~~~V~~v~fspdg~~La----s 538 (761)
...++++++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888865311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEecCCC-----Cc-----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCC
Q 004327 539 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 607 (761)
Q Consensus 539 gs~DG~I~VWDl~t~-----~~-----~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~ 607 (761)
++.|++|+|||+.+. .. .+..+.+|...|.+++|+|+...+|++++.||.|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998653 11 2456677999999999999977889999999999999999886654443 456
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------CCEEEEEEcCCCCEEEEEe--CC------eEE
Q 004327 608 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVR 672 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-------~~I~sl~~spdg~~Lasgs--Dg------~I~ 672 (761)
.+.+++|+|++.+|++++.||.|++||++ ++....+..|. ..|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 55555554432 3799999999998887655 53 399
Q ss_pred EEECCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-cEEEEEC
Q 004327 673 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 721 (761)
Q Consensus 673 IWdl~s~~~--~~~i~~l~-------~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl 721 (761)
+|+++.... ...+..+. ....+...+.+.++.+++++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986431 12222221 1222333444557878777777644 4555554
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=226.60 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=199.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCc---ceEEEEEcCCCCEEEEEeC---------CCeEEEEecC
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 551 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~---~V~~v~fspdg~~Lasgs~---------DG~I~VWDl~ 551 (761)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999965554 4699999999999998877766544 4899999999999998876 7899999998
Q ss_pred CCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeE
Q 004327 552 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 611 (761)
Q Consensus 552 t~~~~i-~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-------------------~~i~~ 611 (761)
++.... ..+ ...+.+++|+|+|+.++++ . ++.|++||+.++++....... ....+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765300 222 2568899999999877654 3 789999999888765433211 11248
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EEcCCCC
Q 004327 612 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 649 (761)
Q Consensus 612 l~fspd~~~Llags~dg----------------------------------~I~IwDl~t~~~i---~-----~l~~h~~ 649 (761)
+.|+||+++|++++.|. .|++||+.+++.. . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 1 1335778
Q ss_pred CEEEEEEcCCCCEEEEEe-CC----eEEEEE----CCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 004327 650 QVHSVCWNTSGEYLASVS-DE----LVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 712 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg----~I~IWd----l~s~~~~~~i~-~l~~~~~~I~-----sl~fspdg~~L~sg--s~ 712 (761)
.+.+++|+||++++++.. .+ .|++|| +.++.....+. ....+...+. .+.|+|||+.|++. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 22 588899 76653222221 0134555555 78999999976653 23
Q ss_pred CC--cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECC-----CeEEEcC
Q 004327 713 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 761 (761)
Q Consensus 713 dg--~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~D-----G~I~IWd 761 (761)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 6888899888866777777778888888 88877776655 7788873
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=6.3e-19 Score=192.44 Aligned_cols=267 Identities=10% Similarity=0.053 Sum_probs=186.4
Q ss_pred EEEEEECC--CeEEEEEc--CCCeEEE--Eec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC-CCCceeEEeec-C
Q 004327 493 LLATGGHD--KKAVLWCT--ESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 563 (761)
Q Consensus 493 ~Lasgs~D--g~I~VWdl--~t~~~~~--~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~-t~~~~i~~~~~-h 563 (761)
+|++|+.. +.|.+|++ ++++... ... .....+..++|+|++++|++++.+ .|.+|++. ++.. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 56877764 4565432 221 234468899999999999999888 99999997 5543 222211 1
Q ss_pred CCCeEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCeeeeEEe-----cCCCeeEEEEecCCCEEEE
Q 004327 564 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 564 ~~~V~sl~fsp~g~~-llasgs-------------~Dg~I~vWDl~-t~~~~~~~~-----~~~~i~~l~fspd~~~Lla 623 (761)
.+.+.+++|+|+++. ++++++ .++.+.+|++. +++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 133567899999875 344543 68999999997 466554433 3456899999999998887
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEc--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCC--CCCce---eEEEeec
Q 004327 624 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGE---CIHELSC 690 (761)
Q Consensus 624 gs~-dg~I~IwDl~-t~~~i--~~l~--~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s--~~~~~---~i~~l~~ 690 (761)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|||++|++++ ++.|.+|++.. +.... .+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6799999998 66543 3333 2456799999999999988877 67999998753 32110 1112211
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------cEEEEECC-CCcEEE----EccCCCCeeEEEEeC---CC
Q 004327 691 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 745 (761)
Q Consensus 691 ~----~~------~I~sl~-fspdg~~L~sgs~dg------~I~IwDl~-~~~~~~----l~~h~~~V~slafsp---dg 745 (761)
. .. .+..++ |+|||++|+++..+. .|.+|++. +++... ...+...+..++|+| |+
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988876543 79999996 566542 223556678899999 89
Q ss_pred CEEEEEECC-CeEEEcC
Q 004327 746 GMVASASHD-KCVKIWK 761 (761)
Q Consensus 746 ~~LaSgs~D-G~I~IWd 761 (761)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999864 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=7.2e-20 Score=199.51 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=191.9
Q ss_pred eEEEEEcCCCCEEEEEECC---CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 482 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
+.+++|+|||++|+.+..+ ..|.+||+.+++.......+...+..+.|+||+++|++++.++.|++||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877643 4788899998876544443333334488999999999999999999999987653 33
Q ss_pred EeecCCCCeEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCeeeeEEecCCCeeEEEEe
Q 004327 559 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 615 (761)
Q Consensus 559 ~~~~h~~~V~s-------------------l~fsp~g~~llasg----s~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fs 615 (761)
.+..+...... ++|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34567766554332 45678999999998877777666778999999
Q ss_pred c-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCC
Q 004327 616 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 681 (761)
Q Consensus 616 p-d~~~Llags~d------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~ 681 (761)
| ++..|+.++.+ ..|.+||+..++........ ...+..++|+|||++|+..+ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 77777776653 36899998766533322211 23578899999999777665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEEc----------------CCcEEEEECCCCcEEEEccCCC----------
Q 004327 682 GECIHELSCTGNKFHSCVFHP-TFPSLLVIGC----------------YETLELWNMTENKTLTLSAHDK---------- 734 (761)
Q Consensus 682 ~~~i~~l~~~~~~I~sl~fsp-dg~~L~sgs~----------------dg~I~IwDl~~~~~~~l~~h~~---------- 734 (761)
..+..+. ... +.|+| +++++++++. +..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 133 89999 9998877652 3689999999887666666554
Q ss_pred -CeeEEEEeCCCCEEEEEEC-CCeEEEc
Q 004327 735 -LVSSLAASTVNGMVASASH-DKCVKIW 760 (761)
Q Consensus 735 -~V~slafspdg~~LaSgs~-DG~I~IW 760 (761)
.+..++|+||+++|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2677899999998887764 5666665
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=6.1e-18 Score=184.61 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=174.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcC-CCeEEEEecc-CCcceEEEEEcCCCCE--EEEEe-------------
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSR--LATSS------------- 540 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~-t~~~~~~l~~-h~~~V~~v~fspdg~~--Lasgs------------- 540 (761)
+...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 7776543321 1123567899999994 44553
Q ss_pred CCCeEEEEecCCCCceeEEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeee--EEec---CCCee
Q 004327 541 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFKC---QSGAT 610 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~i~~~~----~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-t~~~~~--~~~~---~~~i~ 610 (761)
.++.+.+|++.........+. .+...+.+++|+|+++.++++...++.|++||+. +++... .+.. ...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974332222222 2456799999999987766555457899999998 676532 3331 35688
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEcC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 004327 611 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 668 (761)
Q Consensus 611 ~l~fspd~~~Llags~-dg~I~IwDl~--t~~~i---~~l~~-------h~~------~I~sl~-~spdg~~Lasgs--D 668 (761)
.++|+|+++++++++. ++.|.+|+++ +++.. ..+.. |.. .+..++ |+|||++|++++ +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 45542 12221 122 588999 999999888766 3
Q ss_pred C-----eEEEEECC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CcEEEEECCCC
Q 004327 669 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTEN 724 (761)
Q Consensus 669 g-----~I~IWdl~-s~~~~~~i~-~l~~~~~~I~sl~fsp---dg~~L~sgs~d-g~I~IwDl~~~ 724 (761)
+ .|.+|++. ++. ...+. ....+...+..++|+| ++++|++++.+ +.|.+|+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 89999996 332 12111 2333444566789999 89999999875 79999998766
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.1e-18 Score=182.91 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=168.3
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEEcCCCeEEEEeccC------CcceEEEEEcCCCCEEEEEeCC-----------
Q 004327 481 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLATSSAD----------- 542 (761)
Q Consensus 481 ~V~~lafSpdg~~La-sgs~Dg~I~VWdl~t~~~~~~l~~h------~~~V~~v~fspdg~~Lasgs~D----------- 542 (761)
.+..++|+|||++++ ++..++.|.+||+.+++.+..+..+ ...+.+++|+|++++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578999999998765 4456899999999999888777533 2337899999999999998865
Q ss_pred -CeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC------------
Q 004327 543 -RTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------------ 607 (761)
Q Consensus 543 -G~I~VWDl~t~~~--~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~------------ 607 (761)
+.|.+||+.++.. .+..+. +...+.+++|+|++. +++ ++ +.|++||+.+++.+..+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccce
Confidence 8999999987432 123333 344688999999987 554 43 349999999998887765432
Q ss_pred -------------CeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeE-EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCeE
Q 004327 608 -------------GATQMRFQPRLGRILAAAIE-NYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELV 671 (761)
Q Consensus 608 -------------~i~~l~fspd~~~Llags~d-g~I~IwDl~t~~~-i~~l~~h~~~I~sl~~sp-dg~~LasgsDg~I 671 (761)
....+.+++++......... ..+..+|..+++. ...+..+...+.+++|+| ++++++++ ++.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v 277 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 277 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeE
Confidence 22345555443211111111 1222355555432 222333666889999999 99999988 8899
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 672 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 672 ~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
++||+.++ ..+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 278 ~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 278 AKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 99999886 55555543 345778999999999999888899999999998877
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=3.5e-19 Score=206.52 Aligned_cols=229 Identities=10% Similarity=0.061 Sum_probs=177.0
Q ss_pred CcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeC---CCcEEEEECC
Q 004327 521 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 595 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~-DG~I~VWDl~t~~~~i~~~~~h~-~~V~sl~fsp~g~~llasgs~---Dg~I~vWDl~ 595 (761)
..+|++++|+|||++||+++. ||++.||+++++. ...+..|. ..+.+++|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999996543 45555555 68999999998 56666664 4445555443
Q ss_pred C---CeeeeEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C--
Q 004327 596 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 668 (761)
Q Consensus 596 t---~~~~~~~~~~~~i~~l~fspd~~~-Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D-- 668 (761)
. +... .+.........+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3333445667799999865 4455556666799999987665554333 7899999999999776 5
Q ss_pred --CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--cEEEEECCCCcEEEEccCCCCeeEEE----
Q 004327 669 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 740 (761)
Q Consensus 669 --g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~h~~~V~sla---- 740 (761)
..|++||+.++.. ..+..+...+..++|+|||++|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 5899999987632 25566778899999999999999888888 89999999988876667877787777
Q ss_pred ----EeCCCCEEEEEECCCeEEEcC
Q 004327 741 ----ASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 741 ----fspdg~~LaSgs~DG~I~IWd 761 (761)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=212.06 Aligned_cols=292 Identities=11% Similarity=0.042 Sum_probs=197.1
Q ss_pred ccceecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEEC---------CCeEEEEEcCCCeEE--EEeccCCcc
Q 004327 458 GRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVK--STLEEHTQW 523 (761)
Q Consensus 458 ~r~~d~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~---------Dg~I~VWdl~t~~~~--~~l~~h~~~ 523 (761)
+++|+...+.. ...+.+|.. .|.+++|||||++||+++. ++.|++||+.+++.+ ..+ ...
T Consensus 38 i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~ 111 (719)
T 1z68_A 38 IVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRP 111 (719)
T ss_dssp EEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSS
T ss_pred EEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccc
Confidence 34455555432 233444433 4899999999999999876 789999999998763 222 256
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe-----------------EEEEEcCCCCcEEEEEeCC
Q 004327 524 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 524 V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V-----------------~sl~fsp~g~~llasgs~D 586 (761)
+.+++|+|||+.|+++. |+.|++||+.++.....+..++...| .+++|+|||+.++++...+
T Consensus 112 ~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 88999999999999986 78999999987664222223333322 4899999987776554332
Q ss_pred C---------------------------------cEEEEECCCCeee---eE-----E-ecCCCeeEEEEecCCCEEEEE
Q 004327 587 S---------------------------------EIRYWSINNGSCA---GV-----F-KCQSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 587 g---------------------------------~I~vWDl~t~~~~---~~-----~-~~~~~i~~l~fspd~~~Llag 624 (761)
+ .|++||+.+++.. .. + .+...+..++|+||+..+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW 270 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE
Confidence 2 7889999987653 11 1 122347899999996555443
Q ss_pred EcC----CeEEEEE----CCCCeEEEEE----cCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEECCCCCCc
Q 004327 625 AIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKG 682 (761)
Q Consensus 625 s~d----g~I~IwD----l~t~~~i~~l----~~h~~~I~-----sl~~spdg~~Las--gs-Dg--~I~IWdl~s~~~~ 682 (761)
... ..|.+|| +.++++...+ ..|...+. ++.|+|||+.|+. .. ++ .|++||+.++.
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-- 348 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-- 348 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--
T ss_pred eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--
Confidence 332 2588999 8777655444 35777676 8899999986554 33 45 67778876653
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCC--C--cEEEEc----cCCCCeeEEEEeCCCCEEE
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE--N--KTLTLS----AHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~--~--~~~~l~----~h~~~V~slafspdg~~La 749 (761)
...+..+...+..+.++ ++..|++.+.+ +.+++|.+.. + +...+. +|...+..+.|+|++++|+
T Consensus 349 --~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 349 --AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp --CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred --eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 33444455567777777 88888888876 6778887643 4 223332 2667788999999998666
Q ss_pred E-EECC--CeEEEcC
Q 004327 750 S-ASHD--KCVKIWK 761 (761)
Q Consensus 750 S-gs~D--G~I~IWd 761 (761)
. ++.+ ..+.+||
T Consensus 426 ~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 426 LVCYGPGIPISTLHD 440 (719)
T ss_dssp EEECCBSSCEEEEEC
T ss_pred EEcCCCCCCeEEEEE
Confidence 4 4333 3566664
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2e-18 Score=206.55 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=192.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc-----eEEEEEcCCCCEEEEEeCC---------CeEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTVR 546 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~-----V~~v~fspdg~~Lasgs~D---------G~I~ 546 (761)
...++.|+|||++|+++ |+.|++||+.+++....+.+|... ..++.|+|||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999999886 999999999999988888777643 2448899999999999876 5677
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------C
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------S 607 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-------------------~ 607 (761)
+||+.++. ...+..|...+..++|+|+|+.++++ . ++.|++||+.++......... .
T Consensus 96 ~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 99999865 34566778889999999999877655 3 789999999887755432211 1
Q ss_pred CeeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEc-
Q 004327 608 GATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ- 645 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~dg------------------------------------~I~IwDl~t---~~--~i~~l~- 645 (761)
....+.|+|||++|+.+..|. .|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 123589999999998876321 588899998 72 223333
Q ss_pred -----CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEECCCCCC------ceeEEEeecCCCceE-----EEEEeCCC
Q 004327 646 -----GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHPTF 704 (761)
Q Consensus 646 -----~h~~~I~sl~~spdg~~Lasgs--D---g~I~IWdl~s~~~------~~~i~~l~~~~~~I~-----sl~fspdg 704 (761)
+|...+..++|+|||++++... + ..|++||+.++.. ...+. -..+...+. .+.|+|||
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCCC
Confidence 3777899999999999766654 2 2799999988741 11111 123444433 67899999
Q ss_pred CEEE-EEEcC-C--cEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004327 705 PSLL-VIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 705 ~~L~-sgs~d-g--~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~ 753 (761)
+.|+ ..+.. | .|++||+.++....+......|..+.+ +|++.|+..+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 9877 66543 3 799999998887777766667776653 44665554443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=3.4e-18 Score=192.06 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=159.1
Q ss_pred CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC---------ceeE-----EeecCCCC
Q 004327 501 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 566 (761)
Q Consensus 501 g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~---------~~i~-----~~~~h~~~ 566 (761)
+.|++|+.... .....+..+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46788764321 1334688999999999999999998 8888753110 0011 11235678
Q ss_pred eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------eeeeEEe----cCCCeeEEEEecC-CCEEEEEEcCCeE
Q 004327 567 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 630 (761)
Q Consensus 567 V~sl~fsp~g~~lla---sgs~Dg~I~vWDl~t~--------~~~~~~~----~~~~i~~l~fspd-~~~Llags~dg~I 630 (761)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999876665 7888999999998754 2222222 3567999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeC
Q 004327 631 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 702 (761)
Q Consensus 631 ~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-------~~~I~sl~fsp 702 (761)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999997 3 223333322 23789999999
Q ss_pred CCCEEEEEE-cCC------cEEEEECCCC
Q 004327 703 TFPSLLVIG-CYE------TLELWNMTEN 724 (761)
Q Consensus 703 dg~~L~sgs-~dg------~I~IwDl~~~ 724 (761)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 887765544 333 3999999765
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=9.2e-18 Score=197.23 Aligned_cols=281 Identities=10% Similarity=0.052 Sum_probs=198.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCeEEEEeccCCcceE---------EEEEc--CCCCE-EEEE
Q 004327 474 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 539 (761)
Q Consensus 474 ~l~~H~~~V~~lafSpdg~~Lasg--s~Dg~I~VWdl~t~~~~~~l~~h~~~V~---------~v~fs--pdg~~-Lasg 539 (761)
.+.+|...|..++|++++-++++. +.++...||....+.....+..|...|. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788899999999887666666 5588999999655555667777776666 66666 99998 7766
Q ss_pred eC-CCeEEEEecC--C-CCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEECCC-----
Q 004327 540 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 596 (761)
Q Consensus 540 s~-DG~I~VWDl~--t-~~~~i~~~~~-----h~~~V~sl~fsp~g~~llasgs~D---------g~I~vWDl~t----- 596 (761)
+. +..|.+|++. . +. ...+.. |...+.+++|+|+|+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5567777765 2 32 344554 667889999999987777555321 5899999987
Q ss_pred -CeeeeEE-ecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEcCCCCCEEEEEEcCCCCE
Q 004327 597 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 662 (761)
Q Consensus 597 -~~~~~~~-~~~~~i~~l~fspd~~~Llags~d--------g~I~IwDl~-t~---~~i~~l~~h~~~I~sl~~spdg~~ 662 (761)
+...... .....+..++|+||+++|++++.+ ..|++||+. ++ +.......|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5554444 334557788999999999988765 379999999 56 444444456788999999999997
Q ss_pred EEEEe-CC--eEEEEECCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCcEEEE--ECCCCcEEEE
Q 004327 663 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 729 (761)
Q Consensus 663 Lasgs-Dg--~I~IWdl~s~~~~~~i~~l~~~~~~--------I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l 729 (761)
++++. ++ .|++||+.++. .......+... +..++|++++.+++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 77 67777765542 22222222111 457899999998888888 888888 7777776677
Q ss_pred ccCCCCeeEE-EEeCCCCEEEEEECCCeEEEc
Q 004327 730 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 730 ~~h~~~V~sl-afspdg~~LaSgs~DG~I~IW 760 (761)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7788888877 554433344555666555554
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=3.1e-17 Score=179.48 Aligned_cols=263 Identities=11% Similarity=0.113 Sum_probs=193.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEEcCCCeEEEEeccC------CcceEEEEEcCCCCEE
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRL 536 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~----------Dg~I~VWdl~t~~~~~~l~~h------~~~V~~v~fspdg~~L 536 (761)
..+..+..+ .++|+|||++|++++. ++.|.+||..+++.+.++... ......++|+|||++|
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 345555554 8999999999998863 678999999999988877532 3456789999999999
Q ss_pred EEEeC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE------EecC
Q 004327 537 ATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV------FKCQ 606 (761)
Q Consensus 537 asgs~--DG~I~VWDl~t~~~~i~~-~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~------~~~~ 606 (761)
+++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.... +...
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred EEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 98874 58999999998653 444 33 22 2334667888767777888899999999865 554422 1222
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC------CC----CCEEEEEEcCCCCEEEEEe-------
Q 004327 607 SGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS------- 667 (761)
Q Consensus 607 ~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~--~i~~l~~------h~----~~I~sl~~spdg~~Lasgs------- 667 (761)
.....+.+.+++..++..+.++.|+++|+.... .+..+.. +. .....++|+|++..++++.
T Consensus 200 ~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 200 DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEG 279 (361)
T ss_dssp TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence 222334456777788888889999999997543 2222211 11 1111278999988777653
Q ss_pred -----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCC--cEEEE-ccCCCCeeEE
Q 004327 668 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSL 739 (761)
Q Consensus 668 -----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~--~~~~l-~~h~~~V~sl 739 (761)
.+.|.+||+.+. +.+..+..+. +..++|+|++++|++++. +.|.+||..++ +.+.. ..+......+
T Consensus 280 ~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp CTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred cccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 237999999887 7777777666 999999999999988886 99999999999 88844 5788889999
Q ss_pred EEeCCCC
Q 004327 740 AASTVNG 746 (761)
Q Consensus 740 afspdg~ 746 (761)
+++|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999985
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=5e-17 Score=177.83 Aligned_cols=263 Identities=8% Similarity=0.044 Sum_probs=189.6
Q ss_pred CCCEEEEEE------CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC----------CCeEEEEecCCC
Q 004327 490 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 553 (761)
Q Consensus 490 dg~~Lasgs------~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----------DG~I~VWDl~t~ 553 (761)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||+++|++++. +++|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666554 3689999999999998888776655 8999999999998863 678999999876
Q ss_pred CceeEEeec------CCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEEEEE
Q 004327 554 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 624 (761)
Q Consensus 554 ~~~i~~~~~------h~~~V~sl~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~-~~~~~~i~~l~fspd~-~~Llag 624 (761)
+. +..+.. +......++|+|+++.++++... ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEE
Confidence 64 444432 22456789999999887766654 68999999999988877 55432 3335677765 577888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC----
Q 004327 625 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 692 (761)
Q Consensus 625 s~dg~I~IwDl~t-~~~i~~l------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~---- 692 (761)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|++||+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8899999999865 5544221 1222222 334467777777666 88999999975421 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004327 693 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 693 ------~~I~sl~fspdg~~L~sgs~-----------dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~D 754 (761)
.....++|+|++++++++.. .+.|.+||+.+++.+ ++..+. +.+++|+||+++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11113689999998888765 348999999999988 555555 999999999999998887
Q ss_pred CeEEEcC
Q 004327 755 KCVKIWK 761 (761)
Q Consensus 755 G~I~IWd 761 (761)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=6.5e-17 Score=193.42 Aligned_cols=285 Identities=14% Similarity=0.072 Sum_probs=188.9
Q ss_pred cceecCCCceeEEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---------CeEEEEEcCCCeEEEEeccCCcce
Q 004327 459 RSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWI 524 (761)
Q Consensus 459 r~~d~~~g~~~~~v~~l~~H~~~-----V~~lafSpdg~~Lasgs~D---------g~I~VWdl~t~~~~~~l~~h~~~V 524 (761)
++|+..++.. ...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+
T Consensus 39 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~ 114 (740)
T 4a5s_A 39 LVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNT 114 (740)
T ss_dssp EEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTE
T ss_pred EEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcc
Confidence 3444444432 3345566533 3458899999999998876 56679999998765 466778889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe-----------------EEEEEcCCCCcEEEEEeCCC
Q 004327 525 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 525 ~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V-----------------~sl~fsp~g~~llasgs~Dg 587 (761)
..++|+|||+.||.+. |+.|++|++.++.....+..++...+ ..+.|+|||+.+++...+++
T Consensus 115 ~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~ 193 (740)
T 4a5s_A 115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT 193 (740)
T ss_dssp EEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred eeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc
Confidence 9999999999999885 68999999987664322333333323 34899999987776543222
Q ss_pred -----------------------------------cEEEEECCC---Ce---eeeEEe------cCCCeeEEEEecCCCE
Q 004327 588 -----------------------------------EIRYWSINN---GS---CAGVFK------CQSGATQMRFQPRLGR 620 (761)
Q Consensus 588 -----------------------------------~I~vWDl~t---~~---~~~~~~------~~~~i~~l~fspd~~~ 620 (761)
.|++||+.+ ++ ...... ....+..+.|+||++.
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~ 273 (740)
T 4a5s_A 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI 273 (740)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE
Confidence 588899988 73 322221 2234788999999886
Q ss_pred EEEEEcC----CeEEEEECCCCe----EEE--EE--cCCCCCEE-----EEEEcCCCCEEE-EEe--CC--eEEEEECCC
Q 004327 621 ILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVCWNTSGEYLA-SVS--DE--LVRVWSIGS 678 (761)
Q Consensus 621 Llags~d----g~I~IwDl~t~~----~i~--~l--~~h~~~I~-----sl~~spdg~~La-sgs--Dg--~I~IWdl~s 678 (761)
++..... ..|.+||+.+++ +.. .+ ..|...|. .+.|+|||+.|+ ..+ +| .|++||+.+
T Consensus 274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 6665542 379999998876 221 11 34665554 789999999876 665 44 789999876
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----C--cEEEEECCCCcEE-EEcc----CCCCeeEEEEeCCCC
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----E--TLELWNMTENKTL-TLSA----HDKLVSSLAASTVNG 746 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g--~I~IwDl~~~~~~-~l~~----h~~~V~slafspdg~ 746 (761)
+. + ..+......+..+.. ++++.|+..+.. + .|+..++.++... .+.. ....+..+.|+|+++
T Consensus 354 ~~---~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 354 KD---C-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp SS---C-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred Cc---e-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence 52 2 233333445555442 447777776664 2 5666666655443 2321 246788999999999
Q ss_pred EEEEEEC
Q 004327 747 MVASASH 753 (761)
Q Consensus 747 ~LaSgs~ 753 (761)
+++....
T Consensus 429 ~~~~~~s 435 (740)
T 4a5s_A 429 YYQLRCS 435 (740)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7765543
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.9e-16 Score=169.04 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=181.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC------------------------CeEEEEEcCCCeEEEEec-cCCcceEEEEEcCCCC
Q 004327 480 SKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS 534 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~D------------------------g~I~VWdl~t~~~~~~l~-~h~~~V~~v~fspdg~ 534 (761)
+.|.+++++++|+++++...+ +.|.+||..+++.+..+. .+...+..|+|+++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 459999999999999888777 479999999898877664 4556789999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEe---------ecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEe
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 604 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~---------~~h~~~V~sl~fsp~g~~llasgs-~Dg~I~vWDl~t~~~~~~~~ 604 (761)
++++...++.|++||.+.....+..+ .++-.....++|+|++..++++.+ .++.|++|| .++..+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888889999999987543234444 234456899999995456776775 689999999 4566666654
Q ss_pred cC-----------CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE----
Q 004327 605 CQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV---- 666 (761)
Q Consensus 605 ~~-----------~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spdg~~Lasg---- 666 (761)
.. ..+..++++|+++.++++. .++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 22 2278899999955555554 57899999999888888774 4567889999999 4333322
Q ss_pred ---e-CCeEEEEECCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 667 ---S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 667 ---s-Dg~I~IWdl~s~~~~~~i~~l---~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
. +..|++||+.++ ..+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 455555 35566789999999996556666677999999754
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=1.9e-16 Score=169.28 Aligned_cols=268 Identities=8% Similarity=0.032 Sum_probs=191.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++.+++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999988888777888999999 4456667777777889999999999888888899999999987653 333
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEc------
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 626 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~D----g~I~vWDl~t~~~~~~~~---~~~~i~~l~fspd~~~Llags~------ 626 (761)
...+...+.+++|++++. +++++..+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999975 55555545 689999998776553332 2345889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCC-CCCceeE-----EEeecCCCceEEE
Q 004327 627 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 698 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s-~~~~~~i-----~~l~~~~~~I~sl 698 (761)
.+.|+.||..+++..... .+...+.+++|+|++++|+.+. ++.|++||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 357788887765443322 2334578999999998665554 78999999964 2211111 11111 1467889
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCC------CeeEEEEeCCCCEEEEEECC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~------~V~slafspdg~~LaSgs~D 754 (761)
++++++..+++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877766677899999985433334433332 68999999998777666555
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=2.9e-16 Score=168.50 Aligned_cols=251 Identities=11% Similarity=0.097 Sum_probs=177.7
Q ss_pred eEEEEEcCCCCEEEEEE---------CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC---C--eEEE
Q 004327 482 VESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVRV 547 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs---------~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---G--~I~V 547 (761)
|..+.| ||++||... .++.|.+||+.+++... + ..+.+++|+|||++|++++.+ + .|.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 667777 888887653 25789999999876543 3 568899999999999888754 3 4777
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCeeee
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCAG 601 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~--------------------------Dg~I~vWDl~t~~~~~ 601 (761)
||+.++. ...+..+.. +.+++|+|+++.+++++.. ...|++||+.+++.+.
T Consensus 90 ~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 90 ADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp EETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred EECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 8887654 233333334 9999999999877766532 3579999999888744
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--- 668 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D--- 668 (761)
.+... .+..+.|+|++ .++++..++ .|+++| +++... +..+ ..+..+ +|||++|+.++ +
T Consensus 167 ~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 167 EFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEccccC
Confidence 44434 78899999998 666665432 455566 555433 3334 455544 89999887766 3
Q ss_pred -----CeEEEEECCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeEEEEe
Q 004327 669 -----ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 742 (761)
Q Consensus 669 -----g~I~IWdl~s~~~~~~i~~l~~~~~~I~s-l~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~slafs 742 (761)
..|++|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 2677777 33 233333444567776 8999 88 88888999999999 8767766666678889999999
Q ss_pred CCCCEEEEEECCCeE-EEc
Q 004327 743 TVNGMVASASHDKCV-KIW 760 (761)
Q Consensus 743 pdg~~LaSgs~DG~I-~IW 760 (761)
+ .++++++.++.. .||
T Consensus 311 ~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 311 E--IVVYLKETATRLRELF 327 (347)
T ss_dssp S--SEEEEEECSSSCCEEE
T ss_pred C--cEEEEEcCCCChHHhe
Confidence 9 677787777654 555
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2e-15 Score=157.89 Aligned_cols=237 Identities=10% Similarity=0.150 Sum_probs=174.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec------cCCcceEEEEE-cCCCCEEEEEeC-CCeEEEE
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 548 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~------~h~~~V~~v~f-spdg~~Lasgs~-DG~I~VW 548 (761)
+|-..+.+++++++++++++...++.|.+||.+ ++.+..+. ++...+.++++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 56666653 24467899999 466666655533 8899999
Q ss_pred ecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEE
Q 004327 549 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 624 (761)
Q Consensus 549 Dl~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~---~~~i~~l~fspd~~~Llag 624 (761)
|.. +.. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 443 44443 3446789999999974 66677778899999965 555555542 2357899999997766655
Q ss_pred EcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCC--CceEEE
Q 004327 625 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 698 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~s~~~~~~i~~l~~~~--~~I~sl 698 (761)
..++.|++||.. ++.+..+..+ ...+.+++++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555566433 36789999999999888877 65 99999964 3 3444444332 347899
Q ss_pred EEeCCCCEEEEEEcCCcEEEEECCCC
Q 004327 699 VFHPTFPSLLVIGCYETLELWNMTEN 724 (761)
Q Consensus 699 ~fspdg~~L~sgs~dg~I~IwDl~~~ 724 (761)
+++|++.. ++++.++.|++|++...
T Consensus 257 ~~~~~g~l-~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSV-VLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEE-EEEETTTEEEEEECSCC
T ss_pred EECCCCcE-EEECCCCeEEEEEcccc
Confidence 99999974 44578899999998654
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2.7e-15 Score=156.97 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=172.0
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEee------cCCCCeEEEEEcCCCCcEEEEEeC-CCcEEE
Q 004327 519 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 591 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~------~h~~~V~sl~fsp~g~~llasgs~-Dg~I~v 591 (761)
++-..+.++++++++.++++...++.|.+||... .. +..+. ++...+.++++.+.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556789999999999888888899999999873 32 44443 234578899995333466656543 789999
Q ss_pred EECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe
Q 004327 592 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 592 WDl~t~~~~~~~~~--~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spdg~~Lasgs 667 (761)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 55776666643 2457899999998866666668899999965 45555553 3456789999999999877776
Q ss_pred -CCeEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-cEEEEECCCCcEEEEccCC--CCeeEEEE
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 741 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~--~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~--~~V~slaf 741 (761)
++.|++||... ..+..+... ...+..+++++++..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344445433 25788999999998666666665 9999996544333444433 34789999
Q ss_pred eCCCCEEEEEECCCeEEEcC
Q 004327 742 STVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 742 spdg~~LaSgs~DG~I~IWd 761 (761)
+|++.++++ +.|+.|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987776 6799999995
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=4.1e-16 Score=169.84 Aligned_cols=246 Identities=12% Similarity=0.106 Sum_probs=169.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEE--EcCCCCEEEEEe---------
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSS--------- 540 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~--fspdg~~Lasgs--------- 540 (761)
.....+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+.... +++++.+++...
T Consensus 73 ~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 73 TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPL 152 (388)
T ss_dssp EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccc
Confidence 344556666666789999999999999999999999999988777766666665444 489999887532
Q ss_pred -------------CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeC-----CCcEEEEECCCCeeee
Q 004327 541 -------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAG 601 (761)
Q Consensus 541 -------------~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp-~g~~llasgs~-----Dg~I~vWDl~t~~~~~ 601 (761)
.+..|.+||+.++. ...+..+...+..++|+| ++..++++... ...|++||+..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK 230 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE
T ss_pred cccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE
Confidence 44689999999865 455556777899999999 87766655542 3478888987665444
Q ss_pred EEecCC--CeeEEEEecCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEcCCCCC---EEEEEEcCCCCEEEEE---
Q 004327 602 VFKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV--- 666 (761)
Q Consensus 602 ~~~~~~--~i~~l~fspd~~~Llags~-dg----~I~IwDl~t~~~i--~~l~~h~~~---I~sl~~spdg~~Lasg--- 666 (761)
...... .+..+.|+|+++.|+..+. ++ .|++||+.+++.. ..+.++... ...++|+|||+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 333332 3667899999998866554 22 3999999988643 333321110 1123799999887753
Q ss_pred ------e-CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CCc--EEEEECCC
Q 004327 667 ------S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YET--LELWNMTE 723 (761)
Q Consensus 667 ------s-Dg~I~IWdl~s~~~~~~i~~l~~~~~-----------~I~sl~fspdg~~L~sgs~-dg~--I~IwDl~~ 723 (761)
. +..|++||+.++. +..+..+.. .+..++|+|||++|++++. ++. |+++|+..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred ccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 5589999998752 233333443 4778899999998888775 444 44455543
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=1.5e-14 Score=167.51 Aligned_cols=278 Identities=11% Similarity=0.038 Sum_probs=205.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcC--CCeEEEEeccCCcceEEEEEc----CCCCEEEEEeC-CCeEEEEecCCC
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENP 553 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~--t~~~~~~l~~h~~~V~~v~fs----pdg~~Lasgs~-DG~I~VWDl~t~ 553 (761)
.+.++.|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+ |||++++++++ ++.|.|||..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 46789999999999999999999999996 888888886544 46799999 69998887765 589999998886
Q ss_pred CceeEEeec----------CCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCCE
Q 004327 554 DYSLRTFTG----------HST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 554 ~~~i~~~~~----------h~~-~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~--~~~~~~~~i~~l~fspd~~~ 620 (761)
+. +..+.- |.. .+..+.+++++..+++....+|.|.++|....+.. ..+........+.|+|++++
T Consensus 277 ~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 277 EP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred cE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 64 443321 222 57888999988888888888899999999875433 33334455778999999999
Q ss_pred EEEEEc-CCeEEEEECCCCeEEEEEcC-----CCCCEEEEEEcCCC-CEEEEEe--CCeEEEEECCCCCC----ceeEEE
Q 004327 621 ILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSG-EYLASVS--DELVRVWSIGSGSK----GECIHE 687 (761)
Q Consensus 621 Llags~-dg~I~IwDl~t~~~i~~l~~-----h~~~I~sl~~spdg-~~Lasgs--Dg~I~IWdl~s~~~----~~~i~~ 687 (761)
+++++. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++ .+++++. ++.|.++|..+... .+.+..
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 988775 78999999999988776653 33222222 57874 4445554 68999999987322 356677
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEc-------CCcEEEEECCCC-----c-E-EEEc--------cCCCCeeEEEEeCCC
Q 004327 688 LSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVN 745 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~~~-----~-~-~~l~--------~h~~~V~slafspdg 745 (761)
+......-..+.++|+++++++... .+.|.+||+.+. . . ..+. .....+..+.|+++|
T Consensus 435 i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 514 (567)
T 1qks_A 435 FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 514 (567)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS
T ss_pred EecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCC
Confidence 7655444455678999999998773 359999999876 2 1 1221 124578999999999
Q ss_pred CEEEEEEC-----CCeEEEcC
Q 004327 746 GMVASASH-----DKCVKIWK 761 (761)
Q Consensus 746 ~~LaSgs~-----DG~I~IWd 761 (761)
++|..+.. ++.|.|+|
T Consensus 515 ~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 515 TEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SEEEEEEECCTTSCCEEEEEE
T ss_pred CEEEEEeecCCCCCCcEEEEE
Confidence 97776643 68888875
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=7.2e-14 Score=145.67 Aligned_cols=275 Identities=9% Similarity=-0.029 Sum_probs=194.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776668999999988 55433 223355779999999999888877778899999986 3
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
......+......+.++++.+++ .++++...++.|.+||. +++...... ....+..+++++++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32122222345678999999986 56656666789999998 555443221 234578999999987666555678999
Q ss_pred EEECCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 632 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 632 IwDl~t~~~i~~-l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.. ...........+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456788999999999777665 789999998 5421 11223334567899999999984444
Q ss_pred EEcCCcEEEEECCCCcEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 710 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~~l--~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.+++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 436789999998 4554433 345577999999 88887776555444443
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=2.3e-15 Score=161.95 Aligned_cols=234 Identities=10% Similarity=0.071 Sum_probs=172.4
Q ss_pred CcceEEEEEcCCCCEEEEEeCC------------------------CeEEEEecCCCCceeEEee-cCCCCeEEEEEcCC
Q 004327 521 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 575 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~D------------------------G~I~VWDl~t~~~~i~~~~-~h~~~V~sl~fsp~ 575 (761)
-+.|.+|+++++|+++++...+ ++|.+||..++.. +..+. ++-.....++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3579999999999988888777 4799999987765 33333 44467899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCe-eeeEEec----------CCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 642 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~-~~~~~~~----------~~~i~~l~fsp-d~~~Llags-~dg~I~IwDl~t~~~i~ 642 (761)
+. ++++...++.|++||..... .+..+.. ...+..++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 76 77777788999999986442 4444421 12478999999 666555554 589999999 5566666
Q ss_pred EEcC----------CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEE
Q 004327 643 KLQG----------HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 643 ~l~~----------h~~~I~sl~~spd-g~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l--~~~~~~I~sl~fspdg~~L~ 708 (761)
.+.. +-....+|+++|+ +.++++.. ++.|++||..++ ..+..+ ..+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 6642 2234899999999 55555555 889999999866 455555 33456788999999 32222
Q ss_pred EE-------EcCCcEEEEECCCCcEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 709 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 709 sg-------s~dg~I~IwDl~~~~~~~l----~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
+. ..+..|++||+.+++.+.. ..+...+.+|+++|+|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999988844 35777899999999998888888899999985
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.4e-14 Score=152.96 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=172.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC----CeEE
Q 004327 471 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR 546 (761)
Q Consensus 471 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D----G~I~ 546 (761)
.+..+..+...+.+++|+++|++++++..++.|.+||.++++....+..+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 344566777788999999999988888889999999999887665554566789999999999888877666 6899
Q ss_pred EEecCCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC
Q 004327 547 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 618 (761)
Q Consensus 547 VWDl~t~~~~i~~~~--~h~~~V~sl~fsp~g~~llasgs~------Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~ 618 (761)
+||.++.... ..+. .+...+.+++++|++. ++++... .+.|+.||..+++..........+..++|+|++
T Consensus 116 ~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9999876542 1222 2445789999999975 4444442 356777777665554444444567889999999
Q ss_pred CEEEEEE-cCCeEEEEECCC-CeEEE--------EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004327 619 GRILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 619 ~~Llags-~dg~I~IwDl~t-~~~i~--------~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~ 687 (761)
+.++++. .++.|++||+++ +..+. .+.++ ..+..++++++|.++++.. ++.|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776665 478999999964 22111 11222 4678899999999888776 7899999984 3 34444
Q ss_pred eecCCC------ceEEEEEeCCCCEEEEEEcCC
Q 004327 688 LSCTGN------KFHSCVFHPTFPSLLVIGCYE 714 (761)
Q Consensus 688 l~~~~~------~I~sl~fspdg~~L~sgs~dg 714 (761)
+..... .+.+++|++++..|++++.++
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 443332 588999999988888777764
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=7.1e-16 Score=181.08 Aligned_cols=241 Identities=10% Similarity=0.070 Sum_probs=165.2
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEEcC--CCeEEEEecc-----CCcceEEEEEcCCCCEEEEEeCC----------
Q 004327 484 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 542 (761)
Q Consensus 484 ~lafS--pdg~~-Lasgs~-Dg~I~VWdl~--t~~~~~~l~~-----h~~~V~~v~fspdg~~Lasgs~D---------- 542 (761)
.+.|+ |||++ |+.++. +..|.+|++. +......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2033455555 67789999999999999998877
Q ss_pred CeEEEEecCCCC----ceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECC-CC---eeeeEEec-
Q 004327 543 RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFKC- 605 (761)
Q Consensus 543 G~I~VWDl~t~~----~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~D-------g~I~vWDl~-t~---~~~~~~~~- 605 (761)
..|++||+.+.. .....+. .+...+..++|+|||+.++++.... ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 589999998720 1244555 5667788999999998777555432 479999999 56 44444443
Q ss_pred CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEcCCCCC--------EEEEEEcCCCCEEEEEeCCeEEEE-
Q 004327 606 QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRVW- 674 (761)
Q Consensus 606 ~~~i~~l~fspd~~~Llags~dg--~I~IwDl~t~~~i~~l~~h~~~--------I~sl~~spdg~~LasgsDg~I~IW- 674 (761)
...+..+.|+|++..++++..++ .|++||+.+++.......+... +.+++|++++.+++++.++.++||
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence 46788999999999666666677 7778887777655433333222 567899999999888776777777
Q ss_pred -ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--cEEEEECCCCcEEEE
Q 004327 675 -SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL--VIGCYE--TLELWNMTENKTLTL 729 (761)
Q Consensus 675 -dl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~--sgs~dg--~I~IwDl~~~~~~~l 729 (761)
|+.++ .+..+..+...+..+ +++++..++ +++.+. .|++||+.+++...+
T Consensus 321 ~d~~~~----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 321 LDPESG----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EETTTT----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EECCCC----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 55443 355666666667766 144444333 333333 577778888876644
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=1.9e-15 Score=179.83 Aligned_cols=245 Identities=8% Similarity=-0.021 Sum_probs=176.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCe-------
Q 004327 477 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 544 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs~Dg-----~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~------- 544 (761)
+|+..+..++|||||++||.+..++ .|++||+.+++.......+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999998876543 8999999999877543222 23678999999999999988766
Q ss_pred ---------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Ce-eee
Q 004327 545 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 601 (761)
Q Consensus 545 ---------I~VWDl~t~~~~-i~~~~--~h~~~V~sl~fsp~g~~llasgs~----Dg~I~vWDl~t------~~-~~~ 601 (761)
|++|++.++... ...+. .|...+..+.|+|+++.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 22223 245568899999999888776642 56899999986 42 233
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe--EEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CC--e
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 670 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~d----g~I~IwDl~t~~--~i~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg--~ 670 (761)
.+..........|+++++.|++.+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++.. |+ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 44333322334588999988887764 369999998764 1233434433 688899997777777777 77 5
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CcEEEEECCCCc
Q 004327 671 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 725 (761)
Q Consensus 671 I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~~~~ 725 (761)
|++|++.++ ..+..+..+...+..+.++|++..+++...+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787555 4555666667778889999999877655443 489999998877
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=5.4e-15 Score=158.56 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=162.5
Q ss_pred CCeEEEEEcCCCCEEEEEECC---C--eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC------------
Q 004327 480 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 542 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~D---g--~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D------------ 542 (761)
..+.+++|+|||++||.++.+ + .|.+||+.+++.......+ . +.+++|+||++.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999888754 3 4888899888766555433 3 9999999999998888642
Q ss_pred ---------------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC---------cEEEEECCCCe
Q 004327 543 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 598 (761)
Q Consensus 543 ---------------G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg---------~I~vWDl~t~~ 598 (761)
..|++||+.++.. +..+.. . .+..++|+|++ +++++..+. .|+++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5789999987653 234443 3 78899999998 665665432 355555 565
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-C
Q 004327 599 CAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-D 668 (761)
Q Consensus 599 ~~~~~~~~~~i~~l~fspd~~~Llags~d--------g~I~IwDl~t~~~i~~l~~h~~~I~s-l~~spdg~~Lasgs-D 668 (761)
....... ..+. .++|++++|++++.+ ..|++|| +++.......+...+.. +.|+ ++ ++++++ +
T Consensus 210 ~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 5444443 3333 349999998887754 3788888 56555445556777886 9999 88 777777 8
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE-EEEECCCCcEEEEccCCCC
Q 004327 669 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 735 (761)
Q Consensus 669 g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I-~IwDl~~~~~~~l~~h~~~ 735 (761)
+.++|| +.++ .. ..+..+...|.+++|++ ..+++++.++.. .||.+. ++...+..|...
T Consensus 283 ~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 283 GSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp TEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred CcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 899999 8743 22 33334467889999999 677777777654 667665 665566665543
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.1e-14 Score=156.81 Aligned_cols=250 Identities=10% Similarity=0.020 Sum_probs=186.9
Q ss_pred CCeEEEEEcCCCeEEEEec------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 004327 500 DKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 573 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~------~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fs 573 (761)
+++|.+||.++++....+. .......++.+. +++++++...++.|.+||..+.+. +..+. .......++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEEe
Confidence 7899999999998765542 122346778874 344555556679999999998774 45554 34668899998
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEEc
Q 004327 574 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 574 p~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~------~i~~l~fspd~~~Llags--~dg~I~IwDl~t~~~i~~l~ 645 (761)
+++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+.
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 886 666666578999999999999888877655 5667777 456777776 37899999999998888776
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs-D----------g~I~IWdl~s~~~~~~i~~l~~~-~~~I~sl~fspdg~~L~sgs~d 713 (761)
.. .....++++++|++++++. + +.|.+||..++ .....+... ......++|+|++++|+++..
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence 43 3457889999999777766 4 68999999876 444444432 346889999999998888765
Q ss_pred CcEEEEECCCCcEEE--Ec-cCCCCeeEEEEeCC-CCEEEEE----ECCCeEEEcC
Q 004327 714 ETLELWNMTENKTLT--LS-AHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 761 (761)
Q Consensus 714 g~I~IwDl~~~~~~~--l~-~h~~~V~slafspd-g~~LaSg----s~DG~I~IWd 761 (761)
.|++||..+++... +. .+...+..++++|+ +.++++. ..++.|.+||
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999998887641 11 22467899999995 4555555 5688999986
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.3e-14 Score=152.81 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=177.0
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|++++.++++...++.|.+||..++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445566688999999998 7888888999999999887 5666667788999999999998877777789999999776
Q ss_pred CceeEEeecC----CCCeEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCeeeeEEecCCCeeEE
Q 004327 554 DYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQM 612 (761)
Q Consensus 554 ~~~i~~~~~h----~~~V~sl~fsp~g~~llas----gs-------------~Dg~I~vWDl~t~~~~~~~~~~~~i~~l 612 (761)
... ...... ...+.+++++|+|. ++++ +. ..+.|+.|+.. ++..........+..+
T Consensus 101 ~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi 177 (296)
T 3e5z_A 101 EWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGL 177 (296)
T ss_dssp CEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEE
T ss_pred cEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccE
Confidence 642 221111 23467899999975 5555 22 13466666665 5544444444567889
Q ss_pred EEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEe
Q 004327 613 RFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~-t~~~---i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l 688 (761)
+|+|+++.+++.+.++.|++||+. ++.. ...+..+...+.+++++++|.++++. ++.|.+||.. + ..+..+
T Consensus 178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~~ 252 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGRV 252 (296)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEEE
T ss_pred EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEEE
Confidence 999999988555667899999987 4544 33333355667789999999987777 8899999986 3 456666
Q ss_pred ecCCCceEEEEE-eCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 689 SCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 689 ~~~~~~I~sl~f-spdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
..+.. +.+++| .+++..|++++.+ .|..++.++.++.
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 66666 889999 5888988888875 5666777666543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=2.4e-14 Score=150.79 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=172.2
Q ss_pred eEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 512 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 512 ~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.+++|++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 34455556667789999999998 7788888999999999875 456666778899999999975 555665678999
Q ss_pred EEECCCCeeeeEEec-----CCCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEcCCC
Q 004327 591 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK 648 (761)
Q Consensus 591 vWDl~t~~~~~~~~~-----~~~i~~l~fspd~~~Llag----s-------------~dg~I~IwDl~t~~~i~~l~~h~ 648 (761)
+||..+++....... ...+..++++|++..+++. + ..+.|+.||.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999988876544322 1345679999998877763 2 13577777776 443 3344566
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcE
Q 004327 649 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 726 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~-s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~ 726 (761)
.....++|+|++++|++.. ++.|++|++. ++........+......+..++++++|+.+ ++. ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc-CCeEEEECCCCCEE
Confidence 7789999999999985555 7899999997 332101122223344556789999999844 444 88999999874433
Q ss_pred EEEccCCCCeeEEEE-eCCCCEEEEEECCCeEEE
Q 004327 727 LTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 759 (761)
Q Consensus 727 ~~l~~h~~~V~slaf-spdg~~LaSgs~DG~I~I 759 (761)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 35666666 999999 588899999888876554
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.4e-13 Score=159.53 Aligned_cols=265 Identities=11% Similarity=0.060 Sum_probs=195.3
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC--CCCceeEEeecCCCC
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 566 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~--t~~~~i~~~~~h~~~ 566 (761)
+++.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKIGS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEECCS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEecCC-C
Confidence 44556677778899999999999999888644 357799999999999999999999999995 5543 45555433 4
Q ss_pred eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEEc-CCe
Q 004327 567 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 629 (761)
Q Consensus 567 V~sl~fs----p~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~------------~~i~~l~fspd~~~Llags~-dg~ 629 (761)
...++|+ |+|++++++...++.|.+||..+.+.+..+... ..+..+.+++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6789999 699999988888999999999999988876632 14677888888776666554 589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec-----CCCceEEEEE
Q 004327 630 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 700 (761)
Q Consensus 630 I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~-----~~~~I~sl~f 700 (761)
|.++|..+.+. +..+. .......+.|+|++++|+++. ++.|.+||+.++ +.+..+.. |.+.... .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 22332 345678899999999988877 789999999987 34443332 2221222 36
Q ss_pred eCCCCEEEEEE--cCCcEEEEECCC-------CcEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEcC
Q 004327 701 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 761 (761)
Q Consensus 701 spdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~slafspdg~~LaSgs~-------DG~I~IWd 761 (761)
+|++..+++.+ .++.|.++|..+ .+.+ ++......-..+.++|++++|++... ...|.|||
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666655 357999999987 5555 44433334455778999998888663 34777775
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=3.2e-15 Score=162.61 Aligned_cols=237 Identities=10% Similarity=0.060 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEE-------------------EEEcCCCCEEEEE---
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS--- 539 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~-------------------v~fspdg~~Lasg--- 539 (761)
+.++.|+|||++|+.++.++.|++||+.+++....+..+...... +.|+|+++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 344889999999999999999999999988776665545443333 4567888776654
Q ss_pred --eCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecC--CCe
Q 004327 540 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ--SGA 609 (761)
Q Consensus 540 --s~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp-~g~~llasgs~D-----g~I~vWDl~t~~~~~~~~~~--~~i 609 (761)
..+..|++||+.++.. ..+..+...+..+.|+| ++..++++.... ..|++||+..++........ ..+
T Consensus 163 ~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred cCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 3567899999987653 33345677899999999 665555544322 46999998766544333321 136
Q ss_pred eEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe----------------
Q 004327 610 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS---------------- 667 (761)
Q Consensus 610 ~~l~fspd~~~Llags~d-----g~I~IwDl~t~~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs---------------- 667 (761)
..+.|+|++++|++++.+ +.|++||+.+++...... .. .+. +.|+| ||++|++++
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 778999999988877654 449999999886544322 11 233 89999 999888743
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--cEEEEECCCCcEE
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGCY-E--TLELWNMTENKTL 727 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~-----------~I~sl~fspdg~~L~sgs~d-g--~I~IwDl~~~~~~ 727 (761)
+..|++||+.++.. . .+..+.. .+..++|+|++++|++++.+ + .|+++|+.++...
T Consensus 318 ~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSA-Q---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCEEEEEETTTTBC-C---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CCCcEEEEecccCce-E---EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 36899999987642 2 2222222 25567899999998888764 3 4666677666554
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=2.8e-15 Score=178.00 Aligned_cols=247 Identities=10% Similarity=-0.003 Sum_probs=171.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCeEEEEeccCCcce--EEEEEcCCCCEEEEEeCCCe-----
Q 004327 477 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 544 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasg-----s~Dg~I~VWdl~t~~~~~~l~~h~~~V--~~v~fspdg~~Lasgs~DG~----- 544 (761)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 466678999999999999843 345689999999987641 1122223 68999999999999998876
Q ss_pred --------EEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCee
Q 004327 545 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 610 (761)
Q Consensus 545 --------I~VWDl~t~~~---~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-g--~I~vWDl~t~~~~~~~~~~~~i~ 610 (761)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2223334556789999999998887666543 2 67777776666555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC
Q 004327 611 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 611 ~l~fspd~~~Llags~----dg~I~IwDl~t~~~---i~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++.. |+..+||.+....
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 555554 57899999987642 3333333 4568888998 666777766 8877777654211
Q ss_pred ceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CcEEEEECCCCcEEEEc
Q 004327 682 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 730 (761)
Q Consensus 682 ~~~i~~l~~~-~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~ 730 (761)
.....+..+ ...+..+.++|++..+++...+ +.|++||+.+++...+.
T Consensus 352 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 -KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp -CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred -CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 5567778899999877755443 48999999988765444
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=6.1e-13 Score=138.66 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=192.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 33455679999999999988877778999999988 55443 233344679999999999877777668899999988 4
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 631 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~-~~-~~~~i~~l~fspd~~~Llags~dg~I~ 631 (761)
.............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222232346789999998864 55566667889999987 554422 11 234578999999988555555578999
Q ss_pred EEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 632 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 632 IwDl~t~~~i~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
+||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++. .....+......+.++++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9999 444333 2233456789999999998777766 668999998 332 112223334567889999999984444
Q ss_pred EEcCCcEEEEECCCCcEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 710 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 710 gs~dg~I~IwDl~~~~~~~l--~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
...++.|..||. ++....+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 444689999998 4554433 33456789999999998666554 4 55544
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=4.2e-14 Score=152.23 Aligned_cols=254 Identities=8% Similarity=-0.019 Sum_probs=182.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
....+++. +++++++...++.|.+||..+++.+.++. .......++|++++.++++...++.|.+||+.+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 34555666668999999999999988885 346789999988885444444899999999998664 3333
Q ss_pred ecCC-----CCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-------
Q 004327 561 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 627 (761)
Q Consensus 561 ~~h~-----~~V~sl~fsp~g~~llasgs-~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~d------- 627 (761)
.... .....+++ +++.++++.. .++.|.+||+.+++.+..+........+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14566777 3456666654 4889999999999999888877778899999997755555444
Q ss_pred ---CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004327 628 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 703 (761)
Q Consensus 628 ---g~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspd 703 (761)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887766532 346899999999998887655 89999998764311 1111112456889999996
Q ss_pred CCEEEEEE-----cCCcEEEEECCCCcEEEEccCCCCeeEEEEe
Q 004327 704 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAAS 742 (761)
Q Consensus 704 g~~L~sgs-----~dg~I~IwDl~~~~~~~l~~h~~~V~slafs 742 (761)
+..|+++. .++.|.+||.. ++.+....-......++|-
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 66666665 56799999998 7766333333445566653
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=5.1e-14 Score=145.34 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 481 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 481 ~V~~lafSpdg~~La-sgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
...+++++++|++++ +...++.|.+||..+.........+...+.++++.+++.++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446789999999766543332233445688999999998666555 88999999876442 22
Q ss_pred ee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004327 560 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 637 (761)
Q Consensus 560 ~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t 637 (761)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 32 2335689999999875 66666668899999876544332211 223578899999988555555678999999988
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 638 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 638 ~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
.........+...+.+|+++++|.++++.. ++.|.+|+..... ...........+..+++++++..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777666 7799999986542 222222223568999999999866666778899
Q ss_pred EEEECCCCc
Q 004327 717 ELWNMTENK 725 (761)
Q Consensus 717 ~IwDl~~~~ 725 (761)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=5e-14 Score=154.58 Aligned_cols=271 Identities=10% Similarity=0.061 Sum_probs=194.0
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 004327 485 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 549 (761)
Q Consensus 485 lafSpdg~~Lasgs~-----Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~DG~I~VWD 549 (761)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998888875 679999999999999998765555 4 99999999988875 367899999
Q ss_pred cCCCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 004327 550 TENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 550 l~t~~~~i~~~~~h-------~~~V~sl~fsp~g~~llasgs-~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
..+.+. +..+.-. ......+.|+|+|++++++.. .++.|.++|+.+++.+..+...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 4444321 124567999999988887764 378999999999999998876442 23343345678
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEcCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEECCCCCCceeEEEee---c-
Q 004327 622 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 690 (761)
Q Consensus 622 lags~dg~I~IwDl~t-~~~i~~l~~h----~~~I~-sl~~s-pdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~---~- 690 (761)
++.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++...++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322211 12222 24564 688777766689999999976531 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-
Q 004327 691 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 752 (761)
Q Consensus 691 ------~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs- 752 (761)
....+..++++++++.+++... .+.|.++|+.+++.+....-...++.|+|++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 1122335778999999998764 2479999999999984444445789999999997 666655
Q ss_pred CCCeEEEcC
Q 004327 753 HDKCVKIWK 761 (761)
Q Consensus 753 ~DG~I~IWd 761 (761)
.++.|.|+|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 589999886
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=9.4e-13 Score=144.74 Aligned_cols=266 Identities=9% Similarity=0.012 Sum_probs=185.2
Q ss_pred EcCCCCEEEEEEC--CC---eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe----------CCCeEEEEecC
Q 004327 487 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 551 (761)
Q Consensus 487 fSpdg~~Lasgs~--Dg---~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~DG~I~VWDl~ 551 (761)
..|+++++++... .. .|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777776653 22 8899999999998888755444 999999999999886 36789999998
Q ss_pred CCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEE
Q 004327 552 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRI 621 (761)
Q Consensus 552 t~~~~i~~~~~h-------~~~V~sl~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~-~~~~~~i~~l~fspd~-~~L 621 (761)
+.+. +..+.-. ......+.|+|+++.++++... ++.|.++| .+++.+.. +..... +.+.|++ ..+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7654 3333211 1234589999999888876644 58899999 99988877 664433 4555655 445
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEc-----CCCCCE-EEEEEcCCCCEEE-EEeCCeEEEEECCCCCCceeEEEeec----
Q 004327 622 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLA-SVSDELVRVWSIGSGSKGECIHELSC---- 690 (761)
Q Consensus 622 lags~dg~I~IwDl~t~~~i~~l~-----~h~~~I-~sl~~spdg~~La-sgsDg~I~IWdl~s~~~~~~i~~l~~---- 690 (761)
++.+.||.+.++|. +++.+.... ....++ ....+.+++..++ ...++.+.+.|+.+... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 66777999999999 876663322 112222 2345666655443 33478999999875421 22222211
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-
Q 004327 691 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 752 (761)
Q Consensus 691 ------~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs- 752 (761)
.......+.++++++.++++.. .+.|.++|+.+++.+..........+++|+||++ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1122445789999998888764 3479999999999884444555789999999999 788877
Q ss_pred CCCeEEEcC
Q 004327 753 HDKCVKIWK 761 (761)
Q Consensus 753 ~DG~I~IWd 761 (761)
.++.|.|||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 589999986
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1e-13 Score=164.88 Aligned_cols=268 Identities=8% Similarity=-0.012 Sum_probs=181.8
Q ss_pred CCCCEEEEEECCC-----eEEEEEcCCCeEEEEe------ccCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEecCC
Q 004327 489 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 552 (761)
Q Consensus 489 pdg~~Lasgs~Dg-----~I~VWdl~t~~~~~~l------~~h~~~V~~v~fspdg~~Lasgs~DG-----~I~VWDl~t 552 (761)
|||++++....++ .|.+.+...++....+ .+|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877655332 3444454444433222 23445688999999999998776543 899999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCeee--eEEec---CCCeeE
Q 004327 553 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 611 (761)
Q Consensus 553 ~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~----------------I~vWDl~t~~~~--~~~~~---~~~i~~ 611 (761)
+......+.. ..+..++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEEE--ECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCcccccC--cccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 7643222222 23678999999887776654 433 999999887632 22232 223678
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 004327 612 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 674 (761)
Q Consensus 612 l~fspd~~~Llags~-----dg~I~IwDl~t------~~-~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg---~I~IW 674 (761)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988876 56899999986 42 34555566666655 4888998777665 22 69999
Q ss_pred ECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--cEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEE
Q 004327 675 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 675 dl~s~~~~~~i~~l~~~~~--~I~sl~fspdg~~L~sgs~dg--~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~La 749 (761)
|+.++... ....+..+.. .+..++|++++..+++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333333 678889997777777777787 5777888677654 6666778899999999987555
Q ss_pred EE-E---CCCeEEEcC
Q 004327 750 SA-S---HDKCVKIWK 761 (761)
Q Consensus 750 Sg-s---~DG~I~IWd 761 (761)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 346787775
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=7.7e-14 Score=143.97 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=163.8
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 523 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 523 ~V~~v~fspdg~~La-sgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
...++++++++++++ +...++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998766 446788999999865432 111123335688999999875 555555 8899999987654332
Q ss_pred EE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC
Q 004327 602 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 679 (761)
Q Consensus 602 ~~-~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~ 679 (761)
.. .....+..+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1224678999999987666656688999998766544333223334678899999999777766 789999998764
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 680 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 680 ~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
. ...........+..+++++++..+++...++.|.+||..+....... .+...+.+++++++|.++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965444445779999999776554333 3346789999999999888888999999
Q ss_pred EcC
Q 004327 759 IWK 761 (761)
Q Consensus 759 IWd 761 (761)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=4.2e-13 Score=141.24 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=178.1
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecC-CCCe
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 567 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-~~~V 567 (761)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 5654 5666654 3578
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004327 568 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 640 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~-------~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~ 640 (761)
.++.+.++++.+++.++.++.|..+|. +++.+..+.... ....+.+.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998766644433777888886 577777765332 23456788999999988889999999998 999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 004327 641 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 641 i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~------~~I~sl~fspdg~~L~sgs~d 713 (761)
+.++... ..+.++.+.++|.+++++. ++.|..||..++ +.+..+.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9988764 4556788889999998888 668999999887 5555554321 237788889999866665311
Q ss_pred --------CcEEEEEC-CCCcEE-EEccC--CCCeeEEE
Q 004327 714 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 740 (761)
Q Consensus 714 --------g~I~IwDl-~~~~~~-~l~~h--~~~V~sla 740 (761)
+..+++++ .+++++ .+..+ -+.|.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23355555 456655 43332 24455543
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1.1e-12 Score=138.12 Aligned_cols=238 Identities=10% Similarity=0.093 Sum_probs=168.6
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EECCCeEEEEEcCCCeEEEEec----cCCcceEEEEEcCC-CCEEEEEeCCCe
Q 004327 477 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT 544 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Las-------gs~Dg~I~VWdl~t~~~~~~l~----~h~~~V~~v~fspd-g~~Lasgs~DG~ 544 (761)
..-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ +.+++ ++.+..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCC
Confidence 33445789999999988887 5778999999988877643322 24567899999999 65444 444557
Q ss_pred EEEEecCCCCceeEEe-ec-----CCCCeEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCeeeeEE
Q 004327 545 VRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVF 603 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~-~~-----h~~~V~sl~fsp~g~~llasgs~D---------------g~I~vWDl~t~~~~~~~ 603 (761)
|.+||.+ +.. ..+ .. ....+.++++++++. ++++...+ +.|..||.. ++.....
T Consensus 94 l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred EEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 9999988 543 222 11 123588999999975 44454433 568888876 6555444
Q ss_pred ecCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCe
Q 004327 604 KCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DEL 670 (761)
Q Consensus 604 ~~~~~i~~l~fs----pd~~~Llags-~dg~I~IwDl~-t~~-----~i~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~ 670 (761)
........++|+ ++++.++++. .++.|.+||++ +++ ....+..+. ..+..++++++|.++++.. ++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 444567889999 9987776665 47899999986 443 223333343 5688999999999888876 789
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCC
Q 004327 671 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 723 (761)
Q Consensus 671 I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~ 723 (761)
|.+||..++. .+..+..+...+.+++|++++++|++++. ++.|..|++..
T Consensus 249 i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987653 33344445578899999999997776665 46899999865
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=1.6e-13 Score=164.16 Aligned_cols=245 Identities=12% Similarity=0.050 Sum_probs=166.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCe--------
Q 004327 478 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 544 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~D-----g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~-------- 544 (761)
|+..+..++|||||++||.+..+ ..|++||+++++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999887654 46999999999876432 12222367899999 99998887654
Q ss_pred ------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--e-eeeEEecCCC
Q 004327 545 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--S-CAGVFKCQSG 608 (761)
Q Consensus 545 ------I~VWDl~t~~~~-i~~~~--~h~~~V~sl~fsp~g~~llasgs~----Dg~I~vWDl~t~--~-~~~~~~~~~~ 608 (761)
|++|++.++... ...+. .+...+..+.|+|+|..++++... ...|++||+.++ + ..........
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999776531 22232 233458899999999887766653 348999999877 4 3333333333
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECC-CCC
Q 004327 609 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 680 (761)
Q Consensus 609 i~~l~fspd~~~Llags~d----g~I~IwDl~t~--~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~-s~~ 680 (761)
+... ++|+++.|++.+.+ +.|++||+.++ .....+..+...+..++|+ ++.++++.. |+..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889999888764 45999999884 3444444455567778887 555666666 8876666554 22
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CcEEEEECCCCcEEEE
Q 004327 681 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 729 (761)
Q Consensus 681 ~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l 729 (761)
.....+.. ....+..+.++|++..|++...+ +.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34445543 35678889999998766654432 4899999988875443
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.2e-13 Score=163.82 Aligned_cols=268 Identities=11% Similarity=-0.011 Sum_probs=172.5
Q ss_pred cCCCCEEEEEECCC-----eEEEEEcCCCeEEEEec------cCCcceEEEEEcCCCCEEEEE-----eCCCeEEEEecC
Q 004327 488 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 551 (761)
Q Consensus 488 Spdg~~Lasgs~Dg-----~I~VWdl~t~~~~~~l~------~h~~~V~~v~fspdg~~Lasg-----s~DG~I~VWDl~ 551 (761)
+|+|++++....++ .|.+.+...+.....+. +|...+.+++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887776543 24444554544333332 455579999999999999844 345689999999
Q ss_pred CCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCee--eeEEec---CCCeeEE
Q 004327 552 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 612 (761)
Q Consensus 552 t~~~~-i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~-------------I~vWDl~t~~~--~~~~~~---~~~i~~l 612 (761)
++... ...+.. .....++|+|++..++++. .|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111211 1126899999987766554 4444 99999988763 223322 2357889
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCcee
Q 004327 613 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 684 (761)
Q Consensus 613 ~fspd~~~Llags~dg----~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IWdl~s~~~~~~ 684 (761)
.|+|++++|++++.++ .|++||..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998888766 7888877665433 33345556666667 5555444443 35899999977632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCcEEEE--ECCCCcEEEEccC-CCCeeEEEEeCCCCEEEEEE----CCCe
Q 004327 685 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 756 (761)
Q Consensus 685 i~~l~~~-~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l~~h-~~~V~slafspdg~~LaSgs----~DG~ 756 (761)
...+..+ ...+..++|+ ++..+++...++..+|| ++.......+..+ .+.|..++++|++..|+... ..+.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223222 4567888888 66677778888876666 4433333344444 66788899999987666332 3467
Q ss_pred EEEcC
Q 004327 757 VKIWK 761 (761)
Q Consensus 757 I~IWd 761 (761)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=2e-11 Score=134.17 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=172.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCeEEEEeccC-------CcceEEEEEcCCCCE
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR 535 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWdl~t~~~~~~l~~h-------~~~V~~v~fspdg~~ 535 (761)
..+..-..+ .++|+|||++|+++. .++.|.+||..+++.+.++... ......+.|+|||++
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 344433343 899999999999886 3678999999998888776432 123558999999999
Q ss_pred EEEEeC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----c-C
Q 004327 536 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-Q 606 (761)
Q Consensus 536 Lasgs~--DG~I~VWDl~t~~~~i~~-~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-----~-~ 606 (761)
|+++.. ++.|.++| .+++. +.. +.. . .|+.+.|++...+++.+.||.+.+||. +++.+.... . .
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 999874 47899999 87654 444 331 1 235566777777777778999999999 877663322 1 1
Q ss_pred CC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC----------CCCCEEEEEEcCCCCEEEEEe------
Q 004327 607 SG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------ 667 (761)
Q Consensus 607 ~~-i~~l~fspd~~~Llags~dg~I~IwDl~t~~--~i~~l~~----------h~~~I~sl~~spdg~~Lasgs------ 667 (761)
.. .....+.++++.++..+.++.+.++|+.+.. .+..+.. .......+.+++++..+++..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 11 1234567777777766788999999997652 2222221 112344578899998877754
Q ss_pred -----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCcEEEEECCCCcEEEE
Q 004327 668 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 729 (761)
Q Consensus 668 -----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l 729 (761)
++.|.++|+.+. +.+..+.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus 292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 247999999887 56666643 44688999999999 677766 478999999999998844
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=2e-12 Score=136.25 Aligned_cols=236 Identities=8% Similarity=-0.025 Sum_probs=163.4
Q ss_pred CCcceEEEEEcCCCCEEEE-------EeCCCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 520 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 520 h~~~V~~v~fspdg~~Las-------gs~DG~I~VWDl~t~~~~i~~~~~-----h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
.-....+++|++++.++++ +..++.|.+||..++.. ..+.. +...+.++++++++..++++.. +.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 3446789999999987777 57788999999877664 22222 4467899999998335554444 44
Q ss_pred cEEEEECCCCeeeeE-Eec-----CCCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEcC
Q 004327 588 EIRYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQG 646 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~-~~~-----~~~i~~l~fspd~~~Llags~d---------------g~I~IwDl~t~~~i~~l~~ 646 (761)
.|.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 79999998 665433 221 1247899999998776665554 578888876 5443322 2
Q ss_pred CCCCEEEEEEc----CCCCEEEEEe--CCeEEEEECC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCcE
Q 004327 647 HKNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 647 h~~~I~sl~~s----pdg~~Lasgs--Dg~I~IWdl~-s~~~--~~~i~~l~~~~-~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
+......++|+ ++++.|+.+. ++.|.+||+. ++.. ...+..+..+. ..+..++++++|..+++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 34457889999 9997665554 7899999986 3211 01222333333 567889999999877777778899
Q ss_pred EEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEcC
Q 004327 717 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 761 (761)
Q Consensus 717 ~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSg-s~DG~I~IWd 761 (761)
.+||..+++.+ .+..+...+.+++|++++++|+.+ ..++.|..|+
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99999866654 455566789999999999955544 4567787764
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=8.2e-12 Score=129.99 Aligned_cols=236 Identities=8% Similarity=-0.011 Sum_probs=168.3
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 596 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t 596 (761)
+..+...+.++++.+++.++++...++.|.+||.. +.........+...+.++++++++. ++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence 33455689999999999877776668899999988 5432222233456799999999864 55566667889999986
Q ss_pred CeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeE
Q 004327 597 GSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELV 671 (761)
Q Consensus 597 ~~~~~~~~---~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I 671 (761)
++. ..+. ....+..+++++++..+++...++.|.+||. +++... ....+...+.+++++++|.++++.. ++.|
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 332 3333 2346788999998876666666889999999 544332 3333456789999999998888776 6899
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEE--ccCCCCeeEEEEeCCCCEEE
Q 004327 672 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVA 749 (761)
Q Consensus 672 ~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l--~~h~~~V~slafspdg~~La 749 (761)
.+||. ++.. ...........+..+++++++..+++...++.|.+||. +++...+ ..+...+.++++++++.+++
T Consensus 165 ~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 165 GRITE-SGDI--TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEcC-CCcE--EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 99998 4421 11123334556889999999985544445779999999 6665533 33557799999999998776
Q ss_pred EEECCCeEEEcC
Q 004327 750 SASHDKCVKIWK 761 (761)
Q Consensus 750 Sgs~DG~I~IWd 761 (761)
+...++.|.+||
T Consensus 241 ~~~~~~~i~~~d 252 (299)
T 2z2n_A 241 TEWGANKIGRLT 252 (299)
T ss_dssp EETTTTEEEEEE
T ss_pred eccCCceEEEEC
Confidence 665778888774
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.53 E-value=1.1e-12 Score=146.25 Aligned_cols=266 Identities=8% Similarity=0.043 Sum_probs=188.1
Q ss_pred CCCCEEEEEECC-----CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe----------CCCeEEEEecCCC
Q 004327 489 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 553 (761)
Q Consensus 489 pdg~~Lasgs~D-----g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~DG~I~VWDl~t~ 553 (761)
++++.+++.... +.|.++|..+++.+.++.....+ .+.++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766665542 69999999999999998765555 899999999988876 3678999999987
Q ss_pred CceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEE
Q 004327 554 DYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 624 (761)
Q Consensus 554 ~~~i~~~~~h-------~~~V~sl~fsp~g~~llasgs~-Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~-~~Llag 624 (761)
+. +..+.-. ......+.|+|++++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 65 4443311 1235678999999888876643 68999999999999988886442 3334433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----cCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--------
Q 004327 625 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 690 (761)
Q Consensus 625 s~dg~I~IwDl~t~~~i~~l----~~h~~~I-~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-------- 690 (761)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++... .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 88899988888666554321 1111221 2356789988777667 78999999865421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCe
Q 004327 691 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 756 (761)
Q Consensus 691 --~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs-~DG~ 756 (761)
.......++++++++++++... .+.|.++|+.+.+.+....-....++++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888764 3479999999999884333334689999999999 888888 5899
Q ss_pred EEEcC
Q 004327 757 VKIWK 761 (761)
Q Consensus 757 I~IWd 761 (761)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=2.5e-12 Score=141.06 Aligned_cols=261 Identities=12% Similarity=0.126 Sum_probs=177.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCeEEEEeccCC-------cceEEEEEcCCCCE
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSR 535 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWdl~t~~~~~~l~~h~-------~~V~~v~fspdg~~ 535 (761)
..+..-..+ .++++|||++|++++ .++.|.+||..+++.+.++.-.. .....++|+|||++
T Consensus 73 ~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 73 GMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred EEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCE
Confidence 334433334 399999999888775 36789999999999988874321 24567999999999
Q ss_pred EEEEeC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEe-cC----C
Q 004327 536 LATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQ----S 607 (761)
Q Consensus 536 Lasgs~--DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-~~~~~~~~-~~----~ 607 (761)
|+++.. ++.|.|+|+.+.+. +..+.-. + |..+.|.+...+++.+.||.+.++++.+ ++...... .. .
T Consensus 151 lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp EEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred EEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 998874 68999999998764 4444321 1 1233455555565777799999999976 55432111 10 1
Q ss_pred Ce-eEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEc---------C-CCCCEEEEEEcCCCCEEEEEe-C-----
Q 004327 608 GA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D----- 668 (761)
Q Consensus 608 ~i-~~l~fspd~~~Llags~dg~I~IwDl~t~~--~i~~l~---------~-h~~~I~sl~~spdg~~Lasgs-D----- 668 (761)
.+ ....|.+..+.++..+.+|.|+++|+.+.. .+..+. + ....+..+++++++..++... +
T Consensus 226 ~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred cccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 11 124665434556667778999999997653 333222 0 122334577789998887764 1
Q ss_pred -----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCcEEEEECCCCcEEEEccCCCCeeEEEE
Q 004327 669 -----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLAA 741 (761)
Q Consensus 669 -----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~-dg~I~IwDl~~~~~~~l~~h~~~V~slaf 741 (761)
+.|.++|+.+. +.+..+.. ...++.|.|++|++ +|+++.. ++.|.++|..+++.+......+..+.|.+
T Consensus 306 hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~ 381 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 381 (386)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred cCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEE
Confidence 47999999887 55555543 24678999999996 6777655 78999999999999855555566677777
Q ss_pred eCC
Q 004327 742 STV 744 (761)
Q Consensus 742 spd 744 (761)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 776
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=1.1e-12 Score=157.00 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=170.8
Q ss_pred cCCCCEEEEEECCCe---EEEE--EcC---CCeEEEEe------ccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 004327 488 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 548 (761)
Q Consensus 488 Spdg~~Lasgs~Dg~---I~VW--dl~---t~~~~~~l------~~h~~~V~~v~fspdg~~Lasgs~D-----G~I~VW 548 (761)
+|||++++....++. ..|| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998877665433 4555 443 33332221 2343468899999999999887654 469999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCee--eeEEecCC---Cee
Q 004327 549 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GAT 610 (761)
Q Consensus 549 Dl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg-------------~I~vWDl~t~~~--~~~~~~~~---~i~ 610 (761)
|+.++.. +.. ..+...+..++|+|+ +.++++...+. .|++|++.++.. ...+.... .+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998774 222 112222467899999 77776654322 399999987653 22333222 378
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEECCC
Q 004327 611 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 678 (761)
Q Consensus 611 ~l~fspd~~~Llags~dg-----~I~IwDl~t~--~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D----g~I~IWdl~s 678 (761)
.+.|+|++++|++.+.++ .|++||+.++ ++...+..+...+.... +|+|..|+..+ + ..|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 899999999998887654 8999999887 31444555555555554 48888887776 2 3599999876
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE--ECCCCcEEEEcc-CCCCeeEEEEeCCCCEEE-EEE--
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 752 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l~~-h~~~V~slafspdg~~La-Sgs-- 752 (761)
+. ......+..+...+..+.|+ ++..+++...++..+|| ++.++....+.. +.+.|..++++|++..|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12233334444556677787 55567777778865555 554443334443 467789999999987554 322
Q ss_pred -CCCeEEEcC
Q 004327 753 -HDKCVKIWK 761 (761)
Q Consensus 753 -~DG~I~IWd 761 (761)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 346787775
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=2.5e-12 Score=135.21 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=162.9
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC--CC
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SG 608 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~-~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~--~~ 608 (761)
.+++|++++.|+.|.+||.++++. +..+..+. ..+.++.+.|+|+ ++++ .++.|+.||. +++.+..+... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 457899999999999999988775 56666555 4789999999975 5543 3778999999 79999888864 35
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC
Q 004327 609 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 680 (761)
Q Consensus 609 i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~------h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~ 680 (761)
+.++.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|.+|++.. ++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 778899999999998887 788888886 6676666541 222445667899999999888 8899999987 6
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCC------CCeeEEEEeCCCCEEEEEE
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~------~~V~slafspdg~~LaSgs 752 (761)
+.+..+... ..+.++.+.++++.++++..++.|..||..+++.+ .+..+. ..+..+...++|.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 556666543 34567788999998888888889999999989887 443221 2378888899998888763
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=1.7e-12 Score=154.12 Aligned_cols=245 Identities=13% Similarity=0.043 Sum_probs=168.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCe-------
Q 004327 477 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 544 (761)
Q Consensus 477 ~H~~~V~~lafSpdg~~Lasgs-----~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~------- 544 (761)
+|...|..++|||||++||.+. ....|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4556788999999999988543 2357999999999865431 111113578999 9999999988743
Q ss_pred ------EEEEecCCCCce---eEEeec-CCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCe-eeeEEec-CCCe
Q 004327 545 ------VRVWDTENPDYS---LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGS-CAGVFKC-QSGA 609 (761)
Q Consensus 545 ------I~VWDl~t~~~~---i~~~~~-h~~~V~sl~fsp~g~~llasgs~---Dg~I~vWDl~t~~-~~~~~~~-~~~i 609 (761)
|++|++.++... +..... |...+..+.|+|+++.++++.+. +..|++||+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 999999876532 222233 44567889999999988877653 3589999998763 2333333 2333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEECCCC
Q 004327 610 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 679 (761)
Q Consensus 610 ~~l~fspd~~~Llags~d----g~I~IwDl~t~~~--i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IWdl~s~ 679 (761)
... |+++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++|++..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 77777887776653 5799999987643 234555665555 8899999888776 54 7899988743
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CcEEEEECCCCcEEEEc
Q 004327 680 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 730 (761)
Q Consensus 680 ~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~ 730 (761)
....+.. ....+..+.+++++..|++...+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2333332 33456777888888877777665 68999999887755443
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.6e-11 Score=136.56 Aligned_cols=231 Identities=9% Similarity=0.022 Sum_probs=160.8
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCeee
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCA 600 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg-~I~vWDl~t~~~~ 600 (761)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|+++++.++++....+ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4688999999998777777789999999987543 223332 23334 999999876664443233 8999998766544
Q ss_pred eEE----e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----EcCCCCCE--EEEEEcCCCCEEEEEe--
Q 004327 601 GVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS-- 667 (761)
Q Consensus 601 ~~~----~-~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~----l~~h~~~I--~sl~~spdg~~Lasgs-- 667 (761)
..+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- ..++|+|++..|+.+.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 443 2 335578899999777788877788999999988764332 22222222 3899999655555444
Q ss_pred CCeEEEEECCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCcEEEEECCCCcEEEEcc
Q 004327 668 DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSA 731 (761)
Q Consensus 668 Dg~I~IWdl~s~~~~~~i~~l~~~---------------~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~ 731 (761)
++.|+.|+.... +..+.++ -.....++|++++..+++-. .++.|+.||+.++...++.+
T Consensus 288 ~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 288 LSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 779999987642 2222222 23478899999999555444 56799999988888776655
Q ss_pred C---------------CCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 732 H---------------DKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 732 h---------------~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+ -.....+++++++.++++-..++.|+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 5 2468999999998777777778888765
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=7.2e-11 Score=124.77 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 476 PASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 476 ~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
..+..-..+..|++++ .++++...++.|..||..+++.. .+ .....+.+++|+++++++++ . ++.|.+||.+++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3444456688999954 45666667899999999887653 33 24567999999999995554 4 5679999998765
Q ss_pred ceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeC--------CCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCE
Q 004327 555 YSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGR 620 (761)
Q Consensus 555 ~~i~~~~~-----h~~~V~sl~fsp~g~~llasgs~--------Dg~I~vWDl~t-~~~~~~~~~~~~i~~l~fspd~~~ 620 (761)
. ..+.. ....+.+++++|+|..++.+... .....+|.+.. ++.............++|+|+++.
T Consensus 85 ~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 A--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp E--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred E--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 3 22221 12457889999998744433222 12234444432 444444444455688999999988
Q ss_pred EEEEEc-CCeEEEEEC--CCCeE-----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004327 621 ILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 621 Llags~-dg~I~IwDl--~t~~~-----i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
++++.. ++.|.+||+ .++.. +..+..+...+..++++++|.++++.. ++.|.+||..++ +.+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence 766655 689999987 45432 223333446788999999998887776 678999999876 566666666
Q ss_pred CCceEEEEEe-CCCCEEEEEEcC
Q 004327 692 GNKFHSCVFH-PTFPSLLVIGCY 713 (761)
Q Consensus 692 ~~~I~sl~fs-pdg~~L~sgs~d 713 (761)
...+++++|. |+++.|++++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 6789999998 898888887764
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=7.1e-11 Score=124.81 Aligned_cols=228 Identities=9% Similarity=0.031 Sum_probs=155.9
Q ss_pred eccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004327 517 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 595 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~ 595 (761)
+..+.....+..|++++ .++++...++.|+.||..++.. ..+ .....+.+++++++++ ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 34444566789999964 4566666789999999987653 233 2456799999999987 4433 3 5689999999
Q ss_pred CCeeeeEEecC-----CCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 004327 596 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 596 t~~~~~~~~~~-----~~i~~l~fspd~~~Llags~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spd 659 (761)
+++........ ..+..++++|+++.+++... .+.|+.+|.. ++... +..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 88765444321 23678999999885554432 2345555554 33322 2223445689999999
Q ss_pred CCEEEEEe--CCeEEEEECC--CCCC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccC
Q 004327 660 GEYLASVS--DELVRVWSIG--SGSK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 732 (761)
Q Consensus 660 g~~Lasgs--Dg~I~IWdl~--s~~~--~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h 732 (761)
++.|+.+. ++.|.+|++. ++.. ...+..+.........++++++|..+++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776655 7899999974 4321 1223333333456788999999986666666778999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEE
Q 004327 733 DKLVSSLAAS-TVNGMVASAS 752 (761)
Q Consensus 733 ~~~V~slafs-pdg~~LaSgs 752 (761)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 8887665554
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=1.3e-10 Score=120.91 Aligned_cols=234 Identities=8% Similarity=-0.050 Sum_probs=166.2
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004327 519 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 598 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~ 598 (761)
.....+.++++.+++.++++...++.|.+||.. +......+..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence 345678999999999988877778999999988 4432222333346789999998864 55566557889999988 55
Q ss_pred eeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 004327 599 CAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 673 (761)
Q Consensus 599 ~~~~~~~---~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i-~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I 673 (761)
.. .+.. ...+..+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++++++++.. ++.|.+
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 3332 2558899999988766666557899999998 5443 23333456789999999999777666 778999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEE--ccCCCCeeEEEEeCCCCEEEEE
Q 004327 674 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASA 751 (761)
Q Consensus 674 Wdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l--~~h~~~V~slafspdg~~LaSg 751 (761)
||. ++.. ...........+..+++++++..+++....+.|.+||. ++....+ ..+...+.++++++++.++++.
T Consensus 172 ~~~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 4321 11222234456889999999875444444568999998 5554433 3455678999999999877766
Q ss_pred ECCCeEEEcC
Q 004327 752 SHDKCVKIWK 761 (761)
Q Consensus 752 s~DG~I~IWd 761 (761)
..++.|.+||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 5678888775
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=2.6e-12 Score=138.99 Aligned_cols=260 Identities=9% Similarity=-0.003 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCeEEEEe-------ccCCcceEEEEEcCCCCEEEEEeC-----CCeE
Q 004327 480 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 545 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs--~Dg~I~VWdl~t~~~~~~l-------~~h~~~V~~v~fspdg~~Lasgs~-----DG~I 545 (761)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|...+.+|+|+++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343556655455432 22 234568999999999876665443 5789
Q ss_pred EEEecCCCCceeEEeec------CCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEEecCCCe--eEEEE
Q 004327 546 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGA--TQMRF 614 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~------h~~~V~sl~fsp~g~~llasgs---~Dg~I~vWDl~t~~~~~~~~~~~~i--~~l~f 614 (761)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+... ....+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987663 333332 2245689999987667766665 6789999999988876655321111 01344
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEECC---CCCC--ce---e
Q 004327 615 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C 684 (761)
Q Consensus 615 spd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IWdl~---s~~~--~~---~ 684 (761)
.+++..+.+...++.+..|. ..+..|+|+|++++|+.+. ++ .|+.++.. .+.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45555555566666665442 2467899999999888877 44 56655532 1100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc--CCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 685 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 685 i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~--h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
+.. .++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.
T Consensus 241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 111 1223345678999999877777778899999985666543332 2456899999999988887765443
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=2.4e-10 Score=122.65 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=154.1
Q ss_pred eEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 482 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 482 V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
..+++|+|++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..++.. ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence 46789999754 55666678999999998876542 32 34679999999998876654 44 499999987663 222
Q ss_pred ecC-----CCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe
Q 004327 561 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY 629 (761)
Q Consensus 561 ~~h-----~~~V~sl~fsp~g~~llasgs~-----Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~ 629 (761)
... ...+.+++++|+|..++.+.+. .+.|+.++ +++.............++|+|+++.++++.. ++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 2358899999998644433221 24566666 4655444333345678999999988776654 689
Q ss_pred EEEEECC--CC-e-----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004327 630 ISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 700 (761)
Q Consensus 630 I~IwDl~--t~-~-----~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~f 700 (761)
|.+||+. ++ . .+..+......+.+++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++|
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEE
Confidence 9999986 55 2 2333333445678999999998877766 678999998 34 445556656667999999
Q ss_pred e-CCCCEEEEEEcCC
Q 004327 701 H-PTFPSLLVIGCYE 714 (761)
Q Consensus 701 s-pdg~~L~sgs~dg 714 (761)
+ +++..|++++..+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 8 8888887776654
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=6.2e-11 Score=131.80 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=162.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCcee
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 557 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG--~I~VWDl~t~~~~i 557 (761)
.....|+|+++++++++...++.|++||.+++.......... ... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 457899999999977777778999999999887766554433 334 99999999999988866 789998876543 2
Q ss_pred EEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----EecCCCe--e-EEEEecCCCEEEEEEc
Q 004327 558 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 626 (761)
Q Consensus 558 ~~~----~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~----~~~~~~i--~-~l~fspd~~~Llags~ 626 (761)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 214466789999996566665 66688999999987764332 1111122 3 9999997666666654
Q ss_pred -CCeEEEEECCCCeEEEEEcCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEe
Q 004327 627 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 627 -dg~I~IwDl~t~~~i~~l~~h~---------------~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l 688 (761)
++.|+.||.... +..+.++. .....++|+++|.++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 689999998754 22232222 3578999999999776654 569999997665 2 2333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 689 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 689 ~~~---------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 222 245788999999765555555668887765
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=3.2e-11 Score=127.92 Aligned_cols=235 Identities=6% Similarity=-0.002 Sum_probs=159.8
Q ss_pred EEEeccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004327 514 KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 514 ~~~l~~h~~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vW 592 (761)
+..+...........|+++++ ++++...++.|..|+.. +. ...+..+...+..+++++++. ++++...++.|.+|
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRS 112 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEE
Confidence 344444556778999999998 56677778999999984 33 455555677899999999975 55455456789999
Q ss_pred ECCCCeeeeEEec-----CCCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEcCCCCC
Q 004327 593 SINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQ 650 (761)
Q Consensus 593 Dl~t~~~~~~~~~-----~~~i~~l~fspd~~~Lla----gs~-------------dg~I~IwDl~t~~~i~~l~~h~~~ 650 (761)
+.. ++....... ...+..+++++++..+++ +.. .+.|+.||..+++..... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 986 554332221 124667999999887765 221 257888888766544333 3346
Q ss_pred EEEEEEcCCCCEEEEEe-C------CeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 651 VHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 651 I~sl~~spdg~~Lasgs-D------g~I~IWdl~s~~~~~~i~~l-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
...++|+||++.|+.+. . +.|++|++.... ......+ .........++++++|+ |++++. +.|.+||..
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSD 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCC
Confidence 78899999999777766 4 689999987542 1111111 11233456789999998 555554 459999985
Q ss_pred CCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 723 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 723 ~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44333444443 6899999999998888888776655
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=3.1e-10 Score=121.78 Aligned_cols=221 Identities=9% Similarity=0.013 Sum_probs=150.2
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 523 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 523 ~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
...+++|++++. ++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ +..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence 356788999754 556666788999999987543 3332 346799999999975 44343 3359999998887654
Q ss_pred EEecC-----CCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C
Q 004327 602 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 668 (761)
Q Consensus 602 ~~~~~-----~~i~~l~fspd~~~Llags~------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D 668 (761)
..... ..+..++++|+++.+++... .+.|+.+| +++... +..+......++|+|++++|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 43321 23678999999886554432 25677777 454433 222334578999999998776665 6
Q ss_pred CeEEEEECC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEe
Q 004327 669 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 742 (761)
Q Consensus 669 g~I~IWdl~--s~-~~--~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafs 742 (761)
+.|.+||+. ++ .. ...+..+.........++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 43 21 12233333334567889999999866666667899999984 5544 555666679999998
Q ss_pred -CCCCEEEEEEC
Q 004327 743 -TVNGMVASASH 753 (761)
Q Consensus 743 -pdg~~LaSgs~ 753 (761)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655543
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=1.8e-11 Score=136.34 Aligned_cols=237 Identities=14% Similarity=0.186 Sum_probs=169.2
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCeEEEEeccC-------CcceEEEEEcCCCCEEEEEeC--CCe
Q 004327 484 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 544 (761)
Q Consensus 484 ~lafSpdg~~Lasgs----------~Dg~I~VWdl~t~~~~~~l~~h-------~~~V~~v~fspdg~~Lasgs~--DG~ 544 (761)
.++++|||++|+++. .++.|.++|..+++.+.++.-. ......+.|+||+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 3678999999999998877422 133567899999999999875 578
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----EecCCC--eeEEEEecCC
Q 004327 545 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSG--ATQMRFQPRL 618 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~----~~~~~~--i~~l~fspd~ 618 (761)
|.++|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +..... ...+.|.+++
T Consensus 202 VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 99999998764 44444211 1344565556666777789999889866655532 111111 1235679999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE--EEcC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEE
Q 004327 619 GRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWS 675 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~t~~~i~--~l~~----------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IWd 675 (761)
..++.....+.|+++|+....... .+.. .......+++++++..+++.. ++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 998888889999999997654321 1110 011122368999988777654 24799999
Q ss_pred CCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCcEEEEECCCCcEEEE
Q 004327 676 IGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 729 (761)
Q Consensus 676 l~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l 729 (761)
+.+. +.+..+.. ......+.|+||++ +++++. .++.|.++|+.+++.+..
T Consensus 357 ~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 357 AETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9887 55555543 23578899999999 888888 488999999999998833
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=7.5e-11 Score=125.01 Aligned_cols=233 Identities=11% Similarity=0.120 Sum_probs=159.8
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004327 475 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 553 (761)
Q Consensus 475 l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~ 553 (761)
+..+.......+|+++|+ ++++...++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 334445577899999998 5667777899999998 444 34555566779999999999976666566889999986 4
Q ss_pred CceeEEeecC-----CCCeEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCeeeeEEecCCCeeE
Q 004327 554 DYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQ 611 (761)
Q Consensus 554 ~~~i~~~~~h-----~~~V~sl~fsp~g~~llas----gs~-------------Dg~I~vWDl~t~~~~~~~~~~~~i~~ 611 (761)
.. ..+..+ ...+.+++++++|. ++++ |.. .+.|+.||..+++..... .......
T Consensus 117 ~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g 192 (305)
T 3dr2_A 117 QA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG 192 (305)
T ss_dssp CE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred CE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence 42 222211 13467899999975 4444 221 256888888777655444 4456788
Q ss_pred EEEecCCCEEEEEEcC------CeEEEEECCCCeEE--EEE-cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 004327 612 MRFQPRLGRILAAAIE------NYISILDVETQVCR--LKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 682 (761)
Q Consensus 612 l~fspd~~~Llags~d------g~I~IwDl~t~~~i--~~l-~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~ 682 (761)
++|+|+++.|+++... +.|++||+...... ..+ .........++++++|+++++. .+.|.+|+.. +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g--- 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G--- 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence 9999999988888765 78999998765411 111 1123445678999999965544 4459999984 3
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 683 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 683 ~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
..+..+.... .+..++|.++++.|++++.+ .|+.+++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence 3445554444 58889999999988888876 4544443
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=6.4e-12 Score=138.19 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=138.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-----------EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-----------~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
.++.+++++...+|++|+.+ .++||++++.. ....+ .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 55669865433 11222 3556 999999 89999999 889999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 550 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 550 l~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
+.+... ......|...|.++.+.+. . ++++..||.|.+||+.++.... ....+++++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987653 4556677888988887754 2 6678889999999999877654 33689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------c---CCCCCEEEEEEcCCCCEEEEEe
Q 004327 630 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 630 I~IwDl~t~~~--i~~l------~---~h~~~I~sl~~spdg~~Lasgs 667 (761)
|++|+...... ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5566 3 3778999999999999988754
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=1.1e-11 Score=135.60 Aligned_cols=254 Identities=11% Similarity=0.059 Sum_probs=171.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCeEEEEeccC-------CcceEEEEEcCCCC
Q 004327 472 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 534 (761)
Q Consensus 472 v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWdl~t~~~~~~l~~h-------~~~V~~v~fspdg~ 534 (761)
+..+..-..+ .+.|+||+++|+++. .++.|.+||+.+++.+.++..+ ......+.|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433345 799999999998886 3689999999999999988643 12456899999999
Q ss_pred EEEEEeC--CCeEEE--EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Ceeee----
Q 004327 535 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 601 (761)
Q Consensus 535 ~Lasgs~--DG~I~V--WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-----~~~~~---- 601 (761)
+|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|+.+.+.|+.+ ++...
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 357888 98876 233321 111 224466667777777889999999986 44331
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCC----------CCCEEEEEEcCCCCEEEEEe--
Q 004327 602 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 667 (761)
Q Consensus 602 ~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~--~~i~~l~~h----------~~~I~sl~~spdg~~Lasgs-- 667 (761)
.+....... . .++++.++..+. +.|.+.|+.+. +.+..+... ......++|+||++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111111122 3 677788777777 99999999754 233322111 01112268999998877643
Q ss_pred C--------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCcEEEEECCCCcEEEEccCCCCee
Q 004327 668 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVS 737 (761)
Q Consensus 668 D--------g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~--dg~I~IwDl~~~~~~~l~~h~~~V~ 737 (761)
+ +.+.+||+.+. +.+..+... .....++|+||+++++++.. ++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 35679999887 455555432 25788999999986555554 8899999999999995555455566
Q ss_pred EEEEeC
Q 004327 738 SLAAST 743 (761)
Q Consensus 738 slafsp 743 (761)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=6.2e-10 Score=121.15 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCe--
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 567 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V-- 567 (761)
++..|++++.++.|..+|.++++.+..+............. +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 45678888899999999999999887775443322222222 45788888999999999998875 33333221110
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEEE
Q 004327 568 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 568 ---~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-----------i-~~l~fspd~~~Llags~dg~I~I 632 (761)
...... +. .++.+..++.|..+|..+++.+..+..... + ....+ .++.+++++.++.|..
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence 122222 23 455677789999999999998877764321 1 11111 2477888888999999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEE
Q 004327 633 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 633 wDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sg 710 (761)
+|.++++.+..... ....++... +..|++++ ++.|..||..++ +.+..... ....+....+ .+..|+++
T Consensus 254 ~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~ 324 (376)
T 3q7m_A 254 LDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVG 324 (376)
T ss_dssp EETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEE
T ss_pred EECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEE
Confidence 99999998877652 334455443 44555566 889999999887 44444431 1222222333 24679999
Q ss_pred EcCCcEEEEECCCCcEE-EEccCCCCeeE-EEEeCCCCEEEEEECCCeEEEcC
Q 004327 711 GCYETLELWNMTENKTL-TLSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~-~l~~h~~~V~s-lafspdg~~LaSgs~DG~I~IWd 761 (761)
+.++.|++||..+++.+ ........+.+ .... +..|+.++.||.|+.||
T Consensus 325 ~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 99999999999999987 33332333322 2222 55788899999999885
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=3.1e-14 Score=156.26 Aligned_cols=223 Identities=14% Similarity=0.041 Sum_probs=122.1
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCC-CeE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 568 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~-~V~ 568 (761)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577999999999999999999999988876 4566666667777888888999999999987764 333322211 111
Q ss_pred -EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC
Q 004327 569 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 647 (761)
Q Consensus 569 -sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h 647 (761)
+..+. .+ ..+++++.|+.|+.||..+|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 22 345567778999999999999887776543 2445678889999999999999999998876655422
Q ss_pred CCCEEEEEEcCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCcEEEEEC
Q 004327 648 KNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 721 (761)
Q Consensus 648 ~~~I~sl~~spdg---~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~s--gs~dg~I~IwDl 721 (761)
. ....++..+. ..+++++ |+.|+.||..++ +.+..+......+....+++++...+. ...++.++++|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 1223333331 3344455 999999999987 455555433333333445556642110 111345666666
Q ss_pred CCCc
Q 004327 722 TENK 725 (761)
Q Consensus 722 ~~~~ 725 (761)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5555
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=2.5e-10 Score=135.33 Aligned_cols=264 Identities=11% Similarity=0.092 Sum_probs=176.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc----------e-EEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~----------V-~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+..|++++.++.|+.+|..+++.+..+..+... + ..+.+ ++..|++++.|+.|..||..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999888543221 0 11222 3568889999999999999998864433
Q ss_pred eec-CCC---CeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEecCC----------------------
Q 004327 560 FTG-HST---TVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS---------------------- 607 (761)
Q Consensus 560 ~~~-h~~---~V~s-l~fsp~g~~llasgs-----~Dg~I~vWDl~t~~~~~~~~~~~---------------------- 607 (761)
-.. +.. .+.+ ..+. + +.+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 322 111 1111 1111 2 34444332 36899999999999987775310
Q ss_pred ----------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------C
Q 004327 608 ----------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------N 649 (761)
Q Consensus 608 ----------~i~~l~fspd~~~Llags~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~ 649 (761)
....+.++|+.+.++++..++ .|..||.++++.+..+.. |. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 012578899989999888775 399999999999988764 22 1
Q ss_pred CEEEEEEcCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------------------------------
Q 004327 650 QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG--------------------------------- 692 (761)
Q Consensus 650 ~I~sl~~spdg~---~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~--------------------------------- 692 (761)
.+.......+|+ +++.++ +|.++++|..+++. +.......
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 222223333564 677777 99999999998843 21111000
Q ss_pred ------CceEEEEEeCCCCEEEEEEc---------------------------------------------CCcEEEEEC
Q 004327 693 ------NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNM 721 (761)
Q Consensus 693 ------~~I~sl~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl 721 (761)
.....++|+|+...+++... ++.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 01123688998887777643 267999999
Q ss_pred CCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 722 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 722 ~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+++.+....+...+..-.+...+.+|++++.||.|+.||
T Consensus 463 ~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 9999884333334444446667788999999999999986
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=3.1e-10 Score=134.29 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=181.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc-----------eEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~-----------V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+..|++++.++.|..+|..+++.+..+...... ...+++ ++..|++++.|+.|..+|..+++.. ..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~-W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV-WH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE-ee
Confidence 457777778899999999999999887643210 112333 4568889999999999999998863 33
Q ss_pred eecC-C----CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe-------------------
Q 004327 560 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 609 (761)
Q Consensus 560 ~~~h-~----~~V~s-l~fsp~g~~llasgs-----~Dg~I~vWDl~t~~~~~~~~~~~~i------------------- 609 (761)
+..+ . ..+.+ ..+. ++.+++.++ .++.|+.||..+++.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 3332 1 11211 1122 234444333 2689999999999998877642211
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC------
Q 004327 610 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 648 (761)
Q Consensus 610 --------------~~l~fspd~~~Llags~dg-------------------~I~IwDl~t~~~i~~l~~--h~------ 648 (761)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887654 599999999999988764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecCC-----------Cce-----------------
Q 004327 649 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 695 (761)
Q Consensus 649 -~~I~sl~~spdg---~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~-----------~~I----------------- 695 (761)
.....+....+| .+|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223334477 5777777 9999999999984 333322110 111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CcEEEEECCCCc
Q 004327 696 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 725 (761)
Q Consensus 696 -------~sl~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~ 725 (761)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888876542 679999999999
Q ss_pred EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 ~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+....+...+....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555666666778888999999999999986
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=1.9e-09 Score=117.19 Aligned_cols=254 Identities=8% Similarity=0.044 Sum_probs=165.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccC---------CcceE-EEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h---------~~~V~-~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
+..|++++.++.|..||.++++.+..+... ...+. .+.. ++..|++++.++.|..+|..+++.. ..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA-WQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE-EEE
Confidence 567888888999999999999988776542 12232 2222 4567888999999999999988753 333
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe------eEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i------~~l~fspd~~~Llags~dg~I~IwD 634 (761)
...........+. + + .++.++.++.|..+|..+++.+..+.....+ ....+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222212222222 2 3 4556777999999999999988877754433 222222 46788888899999999
Q ss_pred CCCCeEEEEEcCCCCC----EEE---EEEcC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 635 VETQVCRLKLQGHKNQ----VHS---VCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 635 l~t~~~i~~l~~h~~~----I~s---l~~sp--dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
..+++.+..+...... +.. +...| .+..+++++ ++.|..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999888776532110 000 10111 234566666 889999999887 3443333 223444444 46
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEE-Ec-cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 705 PSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 705 ~~L~sgs~dg~I~IwDl~~~~~~~-l~-~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..|++++.++.|+.||..+++.+. .. .....+..+... +..|+.++.+|.|++||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 679999999999999999998873 32 122233333333 56788888899888875
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=7.8e-11 Score=128.96 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=165.2
Q ss_pred eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCCceeEEeecC-------C
Q 004327 502 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 564 (761)
Q Consensus 502 ~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~DG~I~VWDl~t~~~~i~~~~~h-------~ 564 (761)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .+++|.+||+.+.+. +..+..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999999766566 799999999998886 368999999999775 5555432 1
Q ss_pred CCeEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC---
Q 004327 565 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 637 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasgs~-Dg~I~v--WDl~t~~~~~~~~~~~~i~~l~fspd~-~~Llags~dg~I~IwDl~t--- 637 (761)
.....++|+|+++.++++... +..|.+ +|+.+ +..+...+. +.+.|++ ..+++.+.||.+.++|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 235689999999888866644 467888 99877 455544332 2233443 3455666788999999987
Q ss_pred --CeEEEE----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecC----------CCceEEEEEe
Q 004327 638 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFH 701 (761)
Q Consensus 638 --~~~i~~----l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~----------~~~I~sl~fs 701 (761)
++.... +.....+. .+..++.++++.. +.|.+.|+.+... ..+..+... ......++|+
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 433211 11122333 3333444455555 8899999865321 222222111 0111226899
Q ss_pred CCCCEEEEEEc-C--------CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEcC
Q 004327 702 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 761 (761)
Q Consensus 702 pdg~~L~sgs~-d--------g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~-~LaSgs-~DG~I~IWd 761 (761)
+++++++++.. . +.+.+||+.+.+.+....-.....+|+|++|++ ++++.. .++.|.|||
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999988754 2 367799999999884333333689999999998 566666 599999986
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=1.8e-10 Score=122.05 Aligned_cols=258 Identities=10% Similarity=0.006 Sum_probs=171.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
.+.++.+.+++. |++++.+ |..||. +++.+..+......+....+. +..|++++.++.|..||.. +.. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4445444 888886 555544433333223333333 5578888889999999988 553 4444
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 639 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~ 639 (761)
..+...+.++.+.+++. ++ .++.++.|..||.. ++....+... ..+.++.+.+++. +++++ +.|+.|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44555566777776654 33 56667999999999 7777666543 3356677766755 55555 8899999 7777
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 640 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 640 ~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.+..+......+.+++++++|.++++..++.|..+|. ++ ..+..+......+..+.+.+++. |++++.++.|..|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEE
Confidence 7777776667788899998887776655788888874 33 33444444444444556665664 8888888899999
Q ss_pred ECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 720 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 720 Dl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
|. +++.+ .+......+.++....++. |..++.+|.+++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 96 56555 4444456677888777776 5568889988864
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=2.8e-10 Score=135.08 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=157.4
Q ss_pred cCCcceEEEEEcCCCCEEEEEe-----CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------
Q 004327 519 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 586 (761)
Q Consensus 519 ~h~~~V~~v~fspdg~~Lasgs-----~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D------- 586 (761)
+|...+..++|+|||++||.+. .+..|++||+.++......+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3556788999999999888543 2357999999987742222221 113567899 988777665432
Q ss_pred -----CcEEEEECCCCee--eeEEecC----CCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCe-EEEEEcCCCCC
Q 004327 587 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAI----ENYISILDVETQV-CRLKLQGHKNQ 650 (761)
Q Consensus 587 -----g~I~vWDl~t~~~--~~~~~~~----~~i~~l~fspd~~~Llags~----dg~I~IwDl~t~~-~i~~l~~h~~~ 650 (761)
..|++|++.+... ...+... .....+.|+|++++|++... .+.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987543 2333322 23678999999999877654 2489999998763 34445556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---cEEEEECC
Q 004327 651 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 722 (761)
Q Consensus 651 I~sl~~spdg~~Lasgs--D---g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~ 722 (761)
.... |+++|..|+..+ + +.|.+||+.++... ....+..+...+. .|++++++|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 666666555444 3 47999999876331 1234444555554 8999999888777655 79999998
Q ss_pred CCcEEEEc-cCCCCeeEEEEeCCCCEEEEEECC----CeEEEcC
Q 004327 723 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 761 (761)
Q Consensus 723 ~~~~~~l~-~h~~~V~slafspdg~~LaSgs~D----G~I~IWd 761 (761)
++....+. .+.+.+..+.+++++..|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76555443 345667788888888766555444 6777765
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=1.7e-08 Score=104.53 Aligned_cols=247 Identities=9% Similarity=0.010 Sum_probs=161.2
Q ss_pred CEEEEEECCCeEEEEEcCCCeE-----EEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCceeEEeecCCC
Q 004327 492 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 565 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~-----~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~~i~~~~~h~~ 565 (761)
.+|+.+.. +.|+.++++.... ...+......+.+++|++++..|+.+. .++.|.+++++.... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 4788888875432 112222234578999999766655554 568999999986542 223322235
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 641 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~fspd~~~Llags~d---g~I~IwDl~t~~~i 641 (761)
....++++++++.++++....+.|.++++............ .....++++|+++.|+++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 67899999987788877777889999999754332222222 457899999987887777653 68989988654322
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEE
Q 004327 642 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 718 (761)
Q Consensus 642 ~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~I 718 (761)
............+++++++.+|+.+. .+.|.++|+... .....+. .......+++. +.+|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222334678999999887777666 679999998753 2222222 22334566654 566777765 469999
Q ss_pred EECCCCcEE-EEccCC-CCeeEEEEeCCCC
Q 004327 719 WNMTENKTL-TLSAHD-KLVSSLAASTVNG 746 (761)
Q Consensus 719 wDl~~~~~~-~l~~h~-~~V~slafspdg~ 746 (761)
+|..+++.+ .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999998877 333222 2478888888764
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.21 E-value=1.2e-08 Score=112.93 Aligned_cols=223 Identities=11% Similarity=0.064 Sum_probs=156.1
Q ss_pred EEc--CCCCEEEEE-ECCCeEEEEEcCCC----eEEEEec-------cCCcceEEEEEcCCCCEEEEEeCC------CeE
Q 004327 486 HFS--PDGKLLATG-GHDKKAVLWCTESF----TVKSTLE-------EHTQWITDVRFSPSLSRLATSSAD------RTV 545 (761)
Q Consensus 486 afS--pdg~~Lasg-s~Dg~I~VWdl~t~----~~~~~l~-------~h~~~V~~v~fspdg~~Lasgs~D------G~I 545 (761)
.++ .++++|++. ..++.|.|+|+.+. +..++++ .....-..+...|++ +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 336 788877654 56789999999765 6667763 112245667889999 77766555 789
Q ss_pred EEEecCCCCceeEEeecCC---CCeEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCeeeeEE
Q 004327 546 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 603 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~---~~V~sl~fsp~g~~llasgs-------------------~Dg~I~vWDl~t~~~~~~~ 603 (761)
.++|..+.+. +..+.... ..-+.+-|+|+++.++ +.. .+..|.+||+.+++.+..+
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998764 55554221 2245688899987555 442 3689999999999888888
Q ss_pred ecC---CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EcCC----------------CCCEE
Q 004327 604 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 652 (761)
Q Consensus 604 ~~~---~~i~~l~f--spd~~~Llags~------dg~I~IwDl~t~~~--i~~--l~~h----------------~~~I~ 652 (761)
... .....+.| +|+++++++++. ++.|.+|..+.+.. ... +... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 864 23455656 999999888875 46887766554421 111 1110 23467
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 004327 653 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 653 sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~--------------~I~sl~fspdg~~L~sgs 711 (761)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544456655544311 357889999999999998
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=1.5e-09 Score=128.54 Aligned_cols=253 Identities=10% Similarity=0.044 Sum_probs=169.6
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccC-C----cceEE-EEEcCCCCEEEEEeC------CCeEEEEecCCCCcee
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 557 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h-~----~~V~~-v~fspdg~~Lasgs~------DG~I~VWDl~t~~~~i 557 (761)
++..|++++.|+.|..+|..+++.+..+..+ . ..+.+ ..+ .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4568888899999999999999999888654 1 11211 111 2345555543 7999999999988643
Q ss_pred EEeecCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------
Q 004327 558 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 587 (761)
Q Consensus 558 ~~~~~h~-------------------------------~~V~sl~fsp~g~~llasgs~Dg------------------- 587 (761)
+...... .....++++++++.++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 3322111 1113577888865555 444332
Q ss_pred cEEEEECCCCeeeeEEecCC----------CeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004327 588 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK------ 648 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~----------~i~~l~fspd~---~~Llags~dg~I~IwDl~t~~~i~~l~~h~------ 648 (761)
.|..+|.++++.+..+.... ....+....++ ..+++++.+|.|+++|.++++.+..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998876421 12233334466 568888889999999999999887765221
Q ss_pred -----CCE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 004327 649 -----NQV------------------------HSVCWNTSGEYLASVS-D------------------------------ 668 (761)
Q Consensus 649 -----~~I------------------------~sl~~spdg~~Lasgs-D------------------------------ 668 (761)
.++ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 011 1468899888877753 2
Q ss_pred -------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEc-cCC
Q 004327 669 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 733 (761)
Q Consensus 669 -------------g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-~h~ 733 (761)
+.|..||+.++ +.+..+.. ...+....+..++..+++++.++.|++||..+++.+ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999887 55555442 333444567778888999999999999999999998 343 333
Q ss_pred CCeeEEEEeCCCCEEE
Q 004327 734 KLVSSLAASTVNGMVA 749 (761)
Q Consensus 734 ~~V~slafspdg~~La 749 (761)
....-+.|..+|+.++
T Consensus 520 ~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCCEEEEeCCEEEE
Confidence 3344566677887443
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=2.8e-10 Score=125.12 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-----------eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 634 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~-----------~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwD 634 (761)
.+..+++++..+ ++++|+.+ .+++|++.... ......... |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999865 55566656 56679865322 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004327 635 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 635 l~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d 713 (761)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+.++.. .. ....|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98776555666678889888877653 55555 99999999987632 22 24579999999999 7889999
Q ss_pred CcEEEEECCCCcE--E-EE------c---cCCCCeeEEEEeCCCCEEEEEE
Q 004327 714 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 714 g~I~IwDl~~~~~--~-~l------~---~h~~~V~slafspdg~~LaSgs 752 (761)
|.+++|+...... . ++ . +|...|.+|.|.+++.++++=.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888774 2 34 2 3788999999999998887643
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=3.6e-09 Score=125.42 Aligned_cols=258 Identities=10% Similarity=0.053 Sum_probs=166.7
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccC--CcceEEEEEcC---CCCEEEEEe------CCCeEEEEecCCCCceeE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h--~~~V~~v~fsp---dg~~Lasgs------~DG~I~VWDl~t~~~~i~ 558 (761)
++..|++++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .+|.|+.||..+++...+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 3568888999999999999999998777542 11111111122 44 444443 378999999999886433
Q ss_pred EeecC------------------------------CCCeEEEEEcCCCCcEEEEEeCCC-------------------cE
Q 004327 559 TFTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EI 589 (761)
Q Consensus 559 ~~~~h------------------------------~~~V~sl~fsp~g~~llasgs~Dg-------------------~I 589 (761)
..... ......++++|+.+ +++.+..++ .|
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 32110 01112577888754 455665554 49
Q ss_pred EEEECCCCeeeeEEecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CC-----
Q 004327 590 RYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ----- 650 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~----------~i~~l~fspd~~---~Llags~dg~I~IwDl~t~~~i~~l~~h~-~~----- 650 (761)
..||.++|+.+..+.... ......+..++. .+++++.+|.|+++|.++++.+....... ..
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 999999999998876421 112222223443 67788889999999999999875432111 00
Q ss_pred ---------------------------------EEEEEEcCCCCEEEEEe------------------------------
Q 004327 651 ---------------------------------VHSVCWNTSGEYLASVS------------------------------ 667 (761)
Q Consensus 651 ---------------------------------I~sl~~spdg~~Lasgs------------------------------ 667 (761)
-..++|+|+..++++..
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 11268888888777652
Q ss_pred ----------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEc
Q 004327 668 ----------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS 730 (761)
Q Consensus 668 ----------------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~ 730 (761)
++.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+.
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 267999999888 5555554333 2333456667888999999999999999999998 443
Q ss_pred -cCCCCeeEEEEeCCCC-EEEEEEC
Q 004327 731 -AHDKLVSSLAASTVNG-MVASASH 753 (761)
Q Consensus 731 -~h~~~V~slafspdg~-~LaSgs~ 753 (761)
.+.....-+.|..+|+ |+++.+.
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCcccCceEEEECCEEEEEEEec
Confidence 3333334567778887 5554443
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.13 E-value=9.6e-10 Score=118.73 Aligned_cols=220 Identities=9% Similarity=0.035 Sum_probs=150.5
Q ss_pred cceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeC-----CC
Q 004327 522 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDN-----NS 587 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~--DG~I~VWDl~t~~~~i~~~~-------~h~~~V~sl~fsp~g~~llasgs~-----Dg 587 (761)
..+..|+++++++++++... ++.++||.+.++. +..+. .+-..+.+++|++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999998888642 3435666665332 33222 2446799999999864 5444322 57
Q ss_pred cEEEEECCCCeeeeEEecC-------CCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEE-EEE
Q 004327 588 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 655 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~-------~~i~~l~fspd~~~Llags----~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~ 655 (761)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999987777643 2358899998767766655 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-cEEEEECC---CCc-----
Q 004327 656 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 725 (761)
Q Consensus 656 ~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~---~~~----- 725 (761)
+.++|..+.+.+ ++.++.|. ..+..++|+|++++|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 66665553 1356799999999999988877 56665532 111
Q ss_pred ---EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 726 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 726 ---~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012224455677899999999888888889999986
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=3.7e-10 Score=119.63 Aligned_cols=256 Identities=10% Similarity=0.044 Sum_probs=168.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCC
Q 004327 485 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 564 (761)
Q Consensus 485 lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~ 564 (761)
+.+..++ .|.+++.++.|..|| .+++....+..+...+.++.+.+++. |++++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4454555 466677788999999 88888776665555667777776665 5555544 888886 3332 22222222
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004327 565 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 643 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~ 643 (761)
..+....+. + .. ++.++.++.|..||.. ++....+..... +.++...+++ .+++++.++.|+.||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-DI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-TE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-CE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEE
Confidence 222233333 3 33 4467778899999998 777666654333 4556666664 47778888999999999 877777
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 644 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 644 l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+......+.++.+.+++.+++++ +.|..|| .++ ..+..+......+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677788888888866655 8899999 554 34444444556677888888875 77788888999998544
Q ss_pred CcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 724 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 724 ~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.....+......+.++.+.+++ .|+.++.+|.|..||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 3333444444445556665555 466677787777765
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=3e-09 Score=121.56 Aligned_cols=257 Identities=9% Similarity=0.012 Sum_probs=175.9
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEecc---------------------------------C------CcceEEEEEcC---
Q 004327 494 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------H------TQWITDVRFSP--- 531 (761)
Q Consensus 494 Lasgs~Dg~I~VWdl~t~~~~~~l~~---------------------------------h------~~~V~~v~fsp--- 531 (761)
|.+|+..|.|+|+-+.+++.+..+.- + .+....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56778888888888877777665420 0 11222344544
Q ss_pred --CCCEEEEEeC-CCeEEEEecCCCCceeEEeec-CCCCeEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 004327 532 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG-HSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 588 (761)
Q Consensus 532 --dg~~Lasgs~-DG~I~VWDl~t~~~~i~~~~~-h~~~V~sl~f-s-p~g~~llasg-----------------s~Dg~ 588 (761)
||++|+++.. +..|.+.|+.+.+. ...+.- ....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 45799999998664 443321 2245788888 4 8988887764 33568
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC--------------------------------------eE
Q 004327 589 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 630 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg--------------------------------------~I 630 (761)
|.++|..+.+.+..+...+....++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999988766778899999999999988543 36
Q ss_pred EEEECCC--CeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCC--------CceeEEEeecCCCceEE
Q 004327 631 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 697 (761)
Q Consensus 631 ~IwDl~t--~~~-i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~--------~~~~i~~l~~~~~~I~s 697 (761)
.|.|.++ ++. +..+.. .....++.++|||+++++++ ++.|.++|+.+.. ....+......+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 6777776 433 333332 23456899999999999988 7899999998531 01122222234556788
Q ss_pred EEEeCCCCEEEEEE-cCCcEEEEECCC----------CcEE-EEccCCCCe-----eEEEEeCCCCEEEEEEC
Q 004327 698 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 753 (761)
Q Consensus 698 l~fspdg~~L~sgs-~dg~I~IwDl~~----------~~~~-~l~~h~~~V-----~slafspdg~~LaSgs~ 753 (761)
++|+++| ++++.. -++.|.+||+.. ...+ ++..|..+- .++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 665555 477999999976 4444 444454321 22345799999998874
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=8.3e-09 Score=117.89 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=168.2
Q ss_pred CCCEEEEEEC-CCeEEEEEcCCCeEEEEecc-CCcceEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 004327 490 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 547 (761)
Q Consensus 490 dg~~Lasgs~-Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~f-s-pdg~~Lasgs------------------~DG~I~V 547 (761)
||++|++... ++.|.+.|+++.++...+.- ....+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877765 46799999999998885532 2245888998 5 8999999885 2468999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 004327 548 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 590 (761)
Q Consensus 548 WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-------------------------------------g~I~ 590 (761)
+|.++.+.......+. ....++++|+++.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999866433333322 356678999988888777443 2478
Q ss_pred EEECCC--Cee-eeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEcCCCCCEEEE
Q 004327 591 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 654 (761)
Q Consensus 591 vWDl~t--~~~-~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~------------~i~~l~~h~~~I~sl 654 (761)
+.|.++ ++. +..+.......++.++|||+++++++. ++.|.+||+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 567777778889999999999888876 6899999999653 344443 33457889
Q ss_pred EEcCCCCEEEEEe--CCeEEEEECCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--cE--
Q 004327 655 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 716 (761)
Q Consensus 655 ~~spdg~~Lasgs--Dg~I~IWdl~s~-------~~~~~i~~l~~~~~~I~-----sl~fspdg~~L~sgs~dg--~I-- 716 (761)
+|+++| ++++.. |+.|.+||+.+. .....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666665 999999999761 11356666666554322 124589999999987633 34
Q ss_pred ---------EEEECCCCcEE
Q 004327 717 ---------ELWNMTENKTL 727 (761)
Q Consensus 717 ---------~IwDl~~~~~~ 727 (761)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 78999766644
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=1.3e-08 Score=120.11 Aligned_cols=264 Identities=13% Similarity=0.084 Sum_probs=172.7
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcc----------e-EEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~----------V-~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~ 559 (761)
+..|++++.++.|..+|..+++.+..+...... + ..+.+ ++..|++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457777888999999999999999887543211 0 11222 3567888899999999999998864433
Q ss_pred eecCC---CCeEE-EEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEecCC--C--------------------
Q 004327 560 FTGHS---TTVMS-LDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQS--G-------------------- 608 (761)
Q Consensus 560 ~~~h~---~~V~s-l~fsp~g~~llasgs~-----Dg~I~vWDl~t~~~~~~~~~~~--~-------------------- 608 (761)
-.... ..+.+ ..+. ++.+++.++. ++.|+.||.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 22111 11111 1111 2344433322 5899999999999988776311 0
Q ss_pred ----------eeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CC
Q 004327 609 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 650 (761)
Q Consensus 609 ----------i~~l~fspd~~~Llags~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~ 650 (761)
...++++++.+.+++++.++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 12468888888888887765 499999999999988764 22 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC------------Cc--------------------
Q 004327 651 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 694 (761)
Q Consensus 651 I~sl~~spdg~---~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~------------~~-------------------- 694 (761)
+....+..+|+ +|+.++ +|.++++|..+++. +....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 577777 99999999998843 32111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCcEEEEECCCCcEEEEccCCC
Q 004327 695 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 734 (761)
Q Consensus 695 ----I~sl~fspdg~~L~sgs------------------------------------~dg~I~IwDl~~~~~~~l~~h~~ 734 (761)
...++++|+...+++.. .++.|+.||+.+++.+....+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888877666532 13679999999999883333334
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 735 LVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 735 ~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788999999999999986
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=4e-08 Score=108.82 Aligned_cols=222 Identities=9% Similarity=-0.004 Sum_probs=148.5
Q ss_pred EEc--CCCCEEEE-EeCCCeEEEEecCCCCc---eeEEee------c-CCCCeEEEEEcCCCCcEEEEEeCC------Cc
Q 004327 528 RFS--PSLSRLAT-SSADRTVRVWDTENPDY---SLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 588 (761)
Q Consensus 528 ~fs--pdg~~Las-gs~DG~I~VWDl~t~~~---~i~~~~------~-h~~~V~sl~fsp~g~~llasgs~D------g~ 588 (761)
.++ .+.++|++ +..+++|+|+|+.+... ..+++. . ....-..+.+.|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 77777665 45578999999975421 223331 1 11234567788997 55566544 78
Q ss_pred EEEEECCCCeeeeEEecCCC----eeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEc
Q 004327 589 IRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~~~----i~~l~fspd~~~Llags-------------------~dg~I~IwDl~t~~~i~~l~ 645 (761)
|.++|..+.+.+..+..... ...+.|+|+++.+++.. .+..|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999988874322 34588899999888774 36899999999998888776
Q ss_pred CC-C-CCEEEEEE--cCCCCEEEEEeC-------CeEEEEECCCCCCceeEEEe--ec----------------CCCceE
Q 004327 646 GH-K-NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH 696 (761)
Q Consensus 646 ~h-~-~~I~sl~~--spdg~~LasgsD-------g~I~IWdl~s~~~~~~i~~l--~~----------------~~~~I~ 696 (761)
.. . .....+.| +|+++++++++. ++|.+|....+ .......+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 42 1 23445555 999998776553 47777666542 11222211 11 024467
Q ss_pred EEEEeCCCCEEEEEEcC-CcEEEEECCCC---cEE-EEccC--------------CCCeeEEEEeCCCCEEEEEE
Q 004327 697 SCVFHPTFPSLLVIGCY-ETLELWNMTEN---KTL-TLSAH--------------DKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 697 sl~fspdg~~L~sgs~d-g~I~IwDl~~~---~~~-~l~~h--------------~~~V~slafspdg~~LaSgs 752 (761)
.+.+++|+++|+++... +.|.+||+... +.+ .+... .+....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 88999999999998874 59999998532 333 22111 01368899999999999887
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=2e-07 Score=96.29 Aligned_cols=222 Identities=7% Similarity=0.005 Sum_probs=144.0
Q ss_pred CEEEEEeCCCeEEEEecCCCCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CC
Q 004327 534 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 608 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~----i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~ 608 (761)
.+|+.+.. +.|+.++++..... ...+......+..++|+++++.++++...++.|.++++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888764321 11122223457899999987888888778899999999866544333322 46
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEECCCCCCce
Q 004327 609 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 683 (761)
Q Consensus 609 i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D---g~I~IWdl~s~~~~~ 683 (761)
...++++++++.++++.. .+.|.++|++.......+.........++++|++..|+.+. . +.|.++++.... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 789999998777777765 57999999875433222322234678999999766665555 3 588888876432 11
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEcC
Q 004327 684 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 761 (761)
Q Consensus 684 ~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs-~DG~I~IWd 761 (761)
.+ ..........+++++++.+|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 12 11223467889999998888777765 58999999866544333333445677764 44555555 457777653
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=126.53 Aligned_cols=201 Identities=9% Similarity=-0.020 Sum_probs=110.7
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCC--e
Q 004327 532 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 609 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~--i 609 (761)
++..|++++.||.|+.||..+++. +..+.. +.+.+..+..++ .++++++.|+.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 444443 455555555554 4555777899999999998887665543211 1
Q ss_pred e-EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004327 610 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 687 (761)
Q Consensus 610 ~-~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~ 687 (761)
. ...+. .++.+++++.++.|+.||.++++.+..+..+. ...++|++..|++++ |+.|+.||..++...-...
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 0 11111 34678888889999999999999888776543 234566777788777 8999999999875322221
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCcEEEEECCCCcEEEEccCCCCeeE-EEEeCCCC
Q 004327 688 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 746 (761)
Q Consensus 688 l~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~s-lafspdg~ 746 (761)
... ....++..+. ..+++++.++.|+.||..+++.+.......++.. ..++.++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 111 1222333332 5688899999999999999998844444555544 33444553
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.00 E-value=7.3e-08 Score=111.65 Aligned_cols=263 Identities=11% Similarity=0.102 Sum_probs=167.7
Q ss_pred CCEEEEEEC-CCeEEEEEc-CCCeEEEEeccCCc-ce----------EEEEEcCCCCEEEEEeCCCeEEEEecCCCCcee
Q 004327 491 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 557 (761)
Q Consensus 491 g~~Lasgs~-Dg~I~VWdl-~t~~~~~~l~~h~~-~V----------~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i 557 (761)
+..|++++. ++.|..+|. .+++.+..+..... .+ ..+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666676 899999999 89999887753321 00 11222 35678888899999999999988643
Q ss_pred EEee-cCC--CCeE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCe-------------------
Q 004327 558 RTFT-GHS--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA------------------- 609 (761)
Q Consensus 558 ~~~~-~h~--~~V~-sl~fsp~g~~llasgs~-----Dg~I~vWDl~t~~~~~~~~~~~~i------------------- 609 (761)
+.-. .+. ..+. ...+. +..+++.+.. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 3222 111 0121 11112 2345443332 789999999999998877643321
Q ss_pred --------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCC--C---
Q 004327 610 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K--- 648 (761)
Q Consensus 610 --------------------~~l~fspd~~~Llags~d----------------g~I~IwDl~t~~~i~~l~~h--~--- 648 (761)
..+++.++.+.++++..+ +.|..+|.++++.+..+... .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235677877888777642 35999999999998887632 1
Q ss_pred -----CCEEEEEEcCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------Cce-----------
Q 004327 649 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 695 (761)
Q Consensus 649 -----~~I~sl~~spdg~---~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~-------------~~I----------- 695 (761)
.++. +....+|+ +++.++ +|.++++|..+++ .+..+.... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22224674 566666 8899999998874 333322111 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCcEEEEECCC
Q 004327 696 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 723 (761)
Q Consensus 696 ---------------~sl~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~~ 723 (761)
..++|+|+...|++... ++.|+.||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 24578888887777643 46899999999
Q ss_pred CcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 724 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 724 ~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.+....+...+....+...+.+|+.++.||.|+.||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 99873333333344333344567788899999999886
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.99 E-value=1.4e-07 Score=98.25 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=143.2
Q ss_pred eEEEEeccCCc--ceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCC
Q 004327 512 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 512 ~~~~~l~~h~~--~V~~v~fspdg~~Lasgs~--DG~I~VWDl~t~~~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~D 586 (761)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455553 443 4689999998644444432 57999999999875 44433 222223455555 55777777789
Q ss_pred CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCC
Q 004327 587 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 661 (761)
Q Consensus 587 g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~~spdg~ 661 (761)
+.|.++|..+.+.+..+... ......+++++++++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999988765 12234466688888888778999999999988877765321 246788888 775
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCC
Q 004327 662 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 724 (761)
Q Consensus 662 ~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~ 724 (761)
+++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555544 789999999988 445544321 135689999999988877775 558888887543
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=1.3e-06 Score=104.91 Aligned_cols=265 Identities=6% Similarity=0.040 Sum_probs=180.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-------CCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 551 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-------h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~ 551 (761)
...|.++...++|.+.+ |+.+ -|.+||..+......... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999998887544 4555 689999887765543221 235799999988876 5667777779999876
Q ss_pred CCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---------cCCCeeEEEEe
Q 004327 552 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ 615 (761)
Q Consensus 552 t~~~~i~~~~~-------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~---------~~~~i~~l~fs 615 (761)
+... ..+.. ....|.++...+++.. . .|..++-|.+||..++....... ....|.++...
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~l-W-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKNL-W-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSCE-E-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCCE-E-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5443 22221 2356899998887643 3 46667779999988765543321 12457888888
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEc----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEee--
Q 004327 616 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-- 689 (761)
Q Consensus 616 pd~~~Llags~dg~I~IwDl~t~~~i~~l~----~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~-- 689 (761)
+++..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.++.. +.|.+||..++ .. ..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~-~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SF-TTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EE-EECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eE-EEcccc
Confidence 887657888888889999998876543322 1345799999999998777665 55889998764 22 2221
Q ss_pred -----cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc-------cCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 690 -----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 690 -----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-------~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
.....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++. .+| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence 1236788999998887 555666 6699999877765 332 123568999998888755544 345 4
Q ss_pred EEc
Q 004327 758 KIW 760 (761)
Q Consensus 758 ~IW 760 (761)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=1.2e-06 Score=105.23 Aligned_cols=267 Identities=7% Similarity=0.087 Sum_probs=176.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEecc-------CCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 478 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 478 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~-------h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
+...|.++...+++.+. .|+.++.|.+||..+.+....... ....|.++...+++.+ ..|+.+ -|.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcC
Confidence 34679999988887644 455555689999887665433221 1356999999888764 445555 4889998
Q ss_pred CCCCceeEEeec--------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCeeEEEEe
Q 004327 551 ENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ 615 (761)
Q Consensus 551 ~t~~~~i~~~~~--------h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-------~~~~i~~l~fs 615 (761)
.+... ..+.. ....|.++...++|... .|..++-|.+|+..+........ ....|.++...
T Consensus 290 ~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGGMW--LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSCEE--EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcCEE--EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76543 32221 23569999998886533 46666779999876544322111 12347888888
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004327 616 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 616 pd~~~Llags~dg~I~IwDl~t~~~i~~l~~--------h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~ 686 (761)
+++ .|.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++-|.+||..++. +.
T Consensus 366 ~~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~ 440 (795)
T 4a2l_A 366 KDK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VE 440 (795)
T ss_dssp TTS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EE
T ss_pred CCC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EE
Confidence 775 467788888899999987754432211 235799999999999444455 6789999987752 22
Q ss_pred Eee-----cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc-------CCCCeeEEEEeCCCCEEEEEECC
Q 004327 687 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 687 ~l~-----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~slafspdg~~LaSgs~D 754 (761)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...+++.+.+.. .+
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC
Confidence 222 2345788999888887 556666 569999998876654432 23678999998888765544 35
Q ss_pred CeEEEc
Q 004327 755 KCVKIW 760 (761)
Q Consensus 755 G~I~IW 760 (761)
| |.+|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 5 4444
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.94 E-value=2.6e-07 Score=107.35 Aligned_cols=265 Identities=9% Similarity=0.036 Sum_probs=167.2
Q ss_pred CCEEEEEEC-CCeEEEEEc-CCCeEEEEeccCCcc-----------eEEEEEcCCCCE----EEEEeCCCeEEEEecCCC
Q 004327 491 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 553 (761)
Q Consensus 491 g~~Lasgs~-Dg~I~VWdl-~t~~~~~~l~~h~~~-----------V~~v~fspdg~~----Lasgs~DG~I~VWDl~t~ 553 (761)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446667776 899999999 899999887543211 123455443444 888889999999999998
Q ss_pred CceeEEeecC-C--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe---------------
Q 004327 554 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 609 (761)
Q Consensus 554 ~~~i~~~~~h-~--~~V~s-l~fsp~g~~llasgs-----~Dg~I~vWDl~t~~~~~~~~~~~~i--------------- 609 (761)
+...+.-... . ..+.+ ..+. + ..+++.++ .++.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8644332211 0 01221 1122 2 34443332 3799999999999998877654322
Q ss_pred ------------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCC
Q 004327 610 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 649 (761)
Q Consensus 610 ------------------------~~l~fspd~~~Llags~d----------------g~I~IwDl~t~~~i~~l~~h~~ 649 (761)
..+++.+..+.+++++.+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 135677888888888765 3899999999999888764221
Q ss_pred ----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCc-------
Q 004327 650 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNK------- 694 (761)
Q Consensus 650 ----------~I~sl~~s-pdg---~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~-------------~~~------- 694 (761)
++. +... .+| ..++.++ +|.++++|..+++ .+...... ..+
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence 122 2222 567 4566676 9999999999884 33322211 011
Q ss_pred -------------------eEEEEEeCCCCEEEEEE---------------------------------------cCCcE
Q 004327 695 -------------------FHSCVFHPTFPSLLVIG---------------------------------------CYETL 716 (761)
Q Consensus 695 -------------------I~sl~fspdg~~L~sgs---------------------------------------~dg~I 716 (761)
...++|+|+...+++.. .++.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 12456777766555432 23679
Q ss_pred EEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 717 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 717 ~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999998873322222222222233567788899999999875
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=4.9e-07 Score=96.16 Aligned_cols=233 Identities=10% Similarity=0.035 Sum_probs=146.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-cc------------------CCcceEEEEEcCCCCEEEEEeC
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE------------------HTQWITDVRFSPSLSRLATSSA 541 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~------------------h~~~V~~v~fspdg~~Lasgs~ 541 (761)
...+++|++++++++++..++.|..||..+++..... .. ....+..+++.++...|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 3567889999987888888999999998765443211 00 0135789999973345666655
Q ss_pred CCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCCe
Q 004327 542 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 598 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~-----h~~~V~sl~fsp-~g~~llasgs~-----------------Dg~I~vWDl~t~~ 598 (761)
.+.|.++|..++.. ..+.. .......+++.+ ++. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 55688888775432 22221 113468899999 874 4444321 3679999988776
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------
Q 004327 599 CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD------ 668 (761)
Q Consensus 599 ~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~~spdg~~LasgsD------ 668 (761)
.............++|+++++.|+++.. .+.|.+||+... ... .+....+ ...++++++|.++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5544443355678999999987777754 689999998752 211 1111223 788999999987776543
Q ss_pred -----CeEEEEECCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCcEEEEECCCC
Q 004327 669 -----ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 724 (761)
Q Consensus 669 -----g~I~IWdl~s~~~~~~i~~l~~~~----~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~~~ 724 (761)
+.|.++|.. + ..+..+.... ..+..+++. ++ .|++++ ..+.|.++++...
T Consensus 255 ~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred cCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 457777764 3 3444443322 345566663 44 455554 4568888887644
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.92 E-value=1e-06 Score=93.25 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=145.1
Q ss_pred CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCC-c
Q 004327 511 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 588 (761)
Q Consensus 511 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs-~Dg-~ 588 (761)
.+.+..+... .....++|++++.++++...++.|..||.+.. . ...+ .....+..+++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3444555433 46789999999987777668899999998753 2 2222 2345688999999986 444433 332 4
Q ss_pred EEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc---------CCCCCEEEEE
Q 004327 589 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 655 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~--~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~-i~~l~---------~h~~~I~sl~ 655 (761)
|..+|..+++........ .....+++.++ ..++++. .++.|+++|..++.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777887777765444322 12344555444 4555555 478999999886532 22111 111234556
Q ss_pred EcCCCCEEEEEe--CCeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE---E
Q 004327 656 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 729 (761)
Q Consensus 656 ~spdg~~Lasgs--Dg~I~IWdl~s-~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~---l 729 (761)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|+++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999875 221 11111111 1345668999999865555557799999975 55432 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEECC
Q 004327 730 SAHDKLVSSLAAS---TVNGMVASASHD 754 (761)
Q Consensus 730 ~~h~~~V~slafs---pdg~~LaSgs~D 754 (761)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233568999998 888777666543
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.91 E-value=5.6e-07 Score=95.73 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=145.2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec--------------------CCCCeEEEEEcCCCCcEEE
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 581 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~--------------------h~~~V~sl~fsp~g~~lla 581 (761)
....+++|.+++.+++++..++.|..||..+... ..+.. ....+..+++.+++..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3466789999998888888999999999876543 22221 1135788999973345554
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 004327 582 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 638 (761)
Q Consensus 582 sgs~Dg~I~vWDl~t~~~~~~~~~-----~~~i~~l~fsp-d~~~Llags~-----------------dg~I~IwDl~t~ 638 (761)
++..+.|..+|..++........ ......+++.+ ++..+++-.. ++.|+.||..++
T Consensus 97 -~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp -EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred -EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 43345588898775543222111 12467899999 8765554322 367999998877
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 004327 639 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---- 712 (761)
Q Consensus 639 ~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~---- 712 (761)
+...... .......|+|++++++|+.+. ++.|.+|++....... ...+..... ...++++++|.++++...
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 6443322 123346799999999776665 6799999987532111 111111223 778999999985555444
Q ss_pred ------CCcEEEEECCCCcEE-EEccC----CCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 713 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 713 ------dg~I~IwDl~~~~~~-~l~~h----~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.+.|..+|.. ++.+ .+... -..++++++. ++.++++...++.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEe
Confidence 3578888875 5544 33322 2457777763 555555555667777653
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=2.3e-06 Score=102.66 Aligned_cols=274 Identities=8% Similarity=-0.069 Sum_probs=176.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec--------------cCCcceEEEEEcCCCCEEEEEeCCCe
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 544 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~--------------~h~~~V~~v~fspdg~~Lasgs~DG~ 544 (761)
...|.++...++|. |..|+..+-|.++|..+........ -....|.++....++. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988875 5556665678899987765432111 1345799999988775 666777777
Q ss_pred EEEEecCCCCceeEEee--------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEE
Q 004327 545 VRVWDTENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 612 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~--------~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----~~~~i~~l 612 (761)
|..|+............ -....|.+++..+++... .|..++-|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW--IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE--EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE--EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 99999876543221110 123568999888776433 45556669999987654332111 12447778
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-
Q 004327 613 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 689 (761)
Q Consensus 613 ~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~- 689 (761)
...+++ .|.+++.++.|..||..+++...... .....|.++...+++.+.++.. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 777664 46667777889999998776443221 1346799999988887666544 6689999876532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc----CCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 690 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 690 --~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~----h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
.....|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++ +.+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 1146788999998887 6667765668889988776665432 2356899998888875554 4467646664
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=5.9e-07 Score=93.43 Aligned_cols=202 Identities=7% Similarity=0.034 Sum_probs=139.9
Q ss_pred eeEEEEEecCCCC--CeEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCeEEEEeccCC-cceEEEEEcCCCCEEEEEe-C
Q 004327 468 TFTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-A 541 (761)
Q Consensus 468 ~~~~v~~l~~H~~--~V~~lafSpdg~~Lasgs~--Dg~I~VWdl~t~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs-~ 541 (761)
.++.+..+. |.. ....+.|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 344555553 443 3579999998755554443 5899999999999998874222 223345554 44555554 5
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCC------CeeEEEEe
Q 004327 542 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQ 615 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~------~i~~l~fs 615 (761)
++.|.++|..+.+. +..+...... ...+++++..++++. .++.|.++|..+.+.+..+.... .+..+.|.
T Consensus 85 ~~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp CSEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 78999999998664 5555422122 233556777888665 58899999999998888877432 35677888
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCC-------------CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCC
Q 004327 616 PRLGRILAAAI-ENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 678 (761)
Q Consensus 616 pd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h-------------~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s 678 (761)
++ .+++... ++.|.+.|..+++.+..+... ....+.|+|+|+++.+++++ .+.|++.++..
T Consensus 161 -dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 -NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 54 6666654 789999999999988887632 13568999999998776666 67888888754
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.86 E-value=4.1e-06 Score=88.54 Aligned_cols=237 Identities=9% Similarity=0.024 Sum_probs=146.0
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC-C-eEE
Q 004327 469 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 546 (761)
Q Consensus 469 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-G-~I~ 546 (761)
.+.+..+..+ .....++|+++++++++-..++.|..||.+.. ....+. ....+..+++.++++++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999998763 333332 23568899999999866655433 2 466
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe----------cCCCeeEEEEe
Q 004327 547 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK----------CQSGATQMRFQ 615 (761)
Q Consensus 547 VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~-~~~~~----------~~~~i~~l~fs 615 (761)
.+|..++......-.........+++.+. ..++++...++.|+++|...+.. +.... .......+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67766655321111112223345555444 45555555688999999876531 11100 00123444 7
Q ss_pred cCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004327 616 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 690 (761)
Q Consensus 616 pd~~~Llags~-dg~I~IwDl~t-~~~--i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~ 690 (761)
+++++|+++.. .+.|.+||+.. ++. ...+. .......++++++|.++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88887777765 67999999874 321 11111 113456789999998766665 7789999875 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 004327 691 TGNKFHSCVFH---PTFPSLLVIGCYE 714 (761)
Q Consensus 691 ~~~~I~sl~fs---pdg~~L~sgs~dg 714 (761)
......+++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888887654
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=3.8e-07 Score=107.68 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=159.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCc-ceEEEEEcC--CCCEEEEEeC------CCeEEEEecCCCCceeEEee
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 561 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~-~V~~v~fsp--dg~~Lasgs~------DG~I~VWDl~t~~~~i~~~~ 561 (761)
+..|++++.|+.|..+|.++++.+..+..... ....+...| .+..++++.. +|.|+.||..+++...+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 45788888999999999999999987754211 000111111 1335555533 58999999999886433321
Q ss_pred c--CC----------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------cEEEE
Q 004327 562 G--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIRYW 592 (761)
Q Consensus 562 ~--h~----------------------------~~V~sl~fsp~g~~llasgs~Dg-------------------~I~vW 592 (761)
. .. .....+++.++.+. ++.+..++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 00 11124677777554 44555444 49999
Q ss_pred ECCCCeeeeEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-----------
Q 004327 593 SINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK----------- 648 (761)
Q Consensus 593 Dl~t~~~~~~~~~~----------~~i~~l~fspd~~---~Llags~dg~I~IwDl~t~~~i~~l~~h~----------- 648 (761)
|.++++.+..+... .......+..++. .+++++.+|.++++|.++++.+..+....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 99999999888743 1222233334554 57888889999999999999885443211
Q ss_pred -CCE------------------------EEEEEcCCCCEEEEE------------------------------------e
Q 004327 649 -NQV------------------------HSVCWNTSGEYLASV------------------------------------S 667 (761)
Q Consensus 649 -~~I------------------------~sl~~spdg~~Lasg------------------------------------s 667 (761)
.++ ..++++|+..++++. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000 126777776665541 1
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCC-eeEEEEeCC
Q 004327 668 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTV 744 (761)
Q Consensus 668 -Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~slafspd 744 (761)
++.|+.||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+...... -.-+.+..+
T Consensus 436 ~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 436 VSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp CEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 367999999887 444444332 22333345557788999999999999999999988 33322211 123344456
Q ss_pred CC-EEEEEE
Q 004327 745 NG-MVASAS 752 (761)
Q Consensus 745 g~-~LaSgs 752 (761)
|+ +++.++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 66 555544
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=5.4e-07 Score=93.02 Aligned_cols=192 Identities=12% Similarity=0.127 Sum_probs=134.8
Q ss_pred eEEEEeccCCc--ceEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 512 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 512 ~~~~~l~~h~~--~V~~v~fspdg~~Lasgs~DG--~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
+.+.++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.- ........+.++++.+++....++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCC
Confidence 345555 3443 34788998 666666666665 899999999875 444432 233333333334567777777899
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 004327 588 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 662 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~~spdg~~ 662 (761)
.+.+||..+.+.+..+.....-..+ +++++.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875543334 4567788887778899999999998887765421 345667886 7766
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 004327 663 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~------------~~~I~sl~fspdg~~L~sgs~d 713 (761)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 789999999988 444444321 2356899999999988888764
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=1e-06 Score=101.92 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=154.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCC----cceEE-EEEcCCCCEEEEEeC------CCeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~----~~V~~-v~fspdg~~Lasgs~------DG~I~VWDl~t~~~~i~~ 559 (761)
+..|++++.|+.|..+|..+++.+..+.... ..+.+ .... + ..+++++. ++.|+.+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999987764321 01211 1111 3 45555554 789999999998764332
Q ss_pred eecCCC-------------------------------------CeEEEEEcCCCCcEEEEEeC-----------C----C
Q 004327 560 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 587 (761)
Q Consensus 560 ~~~h~~-------------------------------------~V~sl~fsp~g~~llasgs~-----------D----g 587 (761)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00135666665555443321 1 3
Q ss_pred cEEEEECCCCeeeeEEecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004327 588 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 648 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~----------~i~~l~fspd~~---~Llags~dg~I~IwDl~t~~~i~~l~~h~------ 648 (761)
.|..+|.++++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999988876431 111122224553 46677789999999999999887764321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 004327 649 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 667 (761)
Q Consensus 649 -------~~I--------------------------~sl~~spdg~~Lasgs---------------------------- 667 (761)
.++ ..++|+|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777766643
Q ss_pred ----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCC-CC
Q 004327 668 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 735 (761)
Q Consensus 668 ----------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~ 735 (761)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++.+ .+.... ..
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 357888998877 344443322 22222233445667888999999999999999988 333221 11
Q ss_pred eeEEEEeCCCCEEE
Q 004327 736 VSSLAASTVNGMVA 749 (761)
Q Consensus 736 V~slafspdg~~La 749 (761)
-.-+.+..+++.++
T Consensus 509 ~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 509 GSPMTYSFKGKQYI 522 (571)
T ss_dssp SCCEEEEETTEEEE
T ss_pred eeeEEEEECCEEEE
Confidence 22234556776444
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.80 E-value=9.4e-08 Score=112.54 Aligned_cols=264 Identities=9% Similarity=0.055 Sum_probs=154.4
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEEcCCCeE--EEEec-cCCcceEEEEEcCCCCEEEEEeC-CCeEEE
Q 004327 484 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 547 (761)
Q Consensus 484 ~lafSp-dg~~Lasgs~Dg-----------~I~VWdl~t~~~--~~~l~-~h~~~V~~v~fspdg~~Lasgs~-DG~I~V 547 (761)
++++.+ ++++++.|+.+. .+.+||..+.+- +..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 888999887643 588999877642 23332 23344556788889999999984 458999
Q ss_pred EecCCCCceeEEeec-C-CCCeEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCeeeeEE-----ecCCCeeEEEE
Q 004327 548 WDTENPDYSLRTFTG-H-STTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRF 614 (761)
Q Consensus 548 WDl~t~~~~i~~~~~-h-~~~V~sl~fsp~g~~llasgs-~D-----g~I~vWDl~t~~~~~~~-----~~~~~i~~l~f 614 (761)
||..+... ..+.. + ...-.++++.+++ .+++.|+ .+ ..+.+||..+.+....- ..........+
T Consensus 270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSW--IPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTEE--EECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCce--eECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 99987543 22211 1 1122345556665 4555666 34 57999999887654431 00000000112
Q ss_pred ecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcC-CCCEEEEEe-CC-----
Q 004327 615 QPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE----- 669 (761)
Q Consensus 615 spd~~~Llags~d---------g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~~sp-dg~~Lasgs-Dg----- 669 (761)
..++..++.++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 2344445555444 457788988765433322221 1234455543 677777766 32
Q ss_pred ------eEEEEECCCCCCceeEEEe--ecC-CCceEEEEEeCCCCEEEEEEcC-----------CcEEEEECCCCcEEEE
Q 004327 670 ------LVRVWSIGSGSKGECIHEL--SCT-GNKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTL 729 (761)
Q Consensus 670 ------~I~IWdl~s~~~~~~i~~l--~~~-~~~I~sl~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~l 729 (761)
.|.+||..+. ...... ... .....++++.++++.+++|+.+ ..+.+||..+++...+
T Consensus 427 ~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred cCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 5778887664 222211 112 2223456777899988888864 4689999988765533
Q ss_pred cc---CCCCeeEEEEeCCCCEEEEEEC
Q 004327 730 SA---HDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 730 ~~---h~~~V~slafspdg~~LaSgs~ 753 (761)
.. ......+..+.+++++++.|+.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 21 1222334556689999999885
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=7.5e-07 Score=91.92 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=134.0
Q ss_pred eeEEEEEecCCCCC--eEEEEEcCCCCEEEEEECCC--eEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe-CC
Q 004327 468 TFTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-AD 542 (761)
Q Consensus 468 ~~~~v~~l~~H~~~--V~~lafSpdg~~Lasgs~Dg--~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~D 542 (761)
.+..+..+ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.. ........++++.|+... .+
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeC
Confidence 34455555 44433 4678898 677777777766 99999999999998875433 333322222455665554 47
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC------CCeeEEEEec
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQP 616 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~------~~i~~l~fsp 616 (761)
+.+.+||..+.+. +.++.... .-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 107 ~~v~v~D~~t~~~-~~ti~~~~-eG~glt--~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQ-VRSFNYDG-EGWGLT--HNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCE-EEEEECSS-CCCCEE--ECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcE-EEEEECCC-CceEEe--cCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998774 55555322 223344 56667776654 778999999999988887653 224457776
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeEEEEEcCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEE
Q 004327 617 RLGRILAAA-IENYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWS 675 (761)
Q Consensus 617 d~~~Llags-~dg~I~IwDl~t~~~i~~l~~h------------~~~I~sl~~spdg~~LasgsDg~I~IWd 675 (761)
+ +.+++.. .++.|.+.|.++++.+..+... ....+.|+|+|+++.|++.+..-=++|.
T Consensus 181 ~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 181 D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 4 4566666 4789999999999998877542 1356899999998888777744333443
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=2.4e-06 Score=99.06 Aligned_cols=264 Identities=9% Similarity=0.022 Sum_probs=161.5
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccCCcce---------EEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeec
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V---------~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~ 562 (761)
..|++++.++.|..+|..+++.+..+....... ..+++ .+..|++++.|+.|..+|..+++...+.-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355566664559999999999988775432210 11222 3567888899999999999998864432221
Q ss_pred C-C--CCeE-EEEEcC---CCCcEEEEEe------CCCcEEEEECCCCeeeeEEecCCC---------------------
Q 004327 563 H-S--TTVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 608 (761)
Q Consensus 563 h-~--~~V~-sl~fsp---~g~~llasgs------~Dg~I~vWDl~t~~~~~~~~~~~~--------------------- 608 (761)
. . ..+. ...+.. ++..+++++. .++.|+.+|..+++.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 1 0111 111111 1222444543 378999999999998876553210
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 004327 609 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 643 (761)
Q Consensus 609 ---------------------i~~l~fspd~~~Llags~--------------------d----g~I~IwDl~t~~~i~~ 643 (761)
-..++++|+.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 023567777788887773 2 5899999999999988
Q ss_pred EcC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------C--
Q 004327 644 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------N-- 693 (761)
Q Consensus 644 l~~--h~--------~~I~sl~~s-pdg~---~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~-------------~-- 693 (761)
+.. |. .++. +... .+|+ +++.++ +|.++++|..+++ .+..+.... .
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 677777 9999999998874 333222111 0
Q ss_pred ------------------c------------eEEEEEeCCCCEEEEEEc-------------------------------
Q 004327 694 ------------------K------------FHSCVFHPTFPSLLVIGC------------------------------- 712 (761)
Q Consensus 694 ------------------~------------I~sl~fspdg~~L~sgs~------------------------------- 712 (761)
. ...++++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0 013466776655555432
Q ss_pred --CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 713 --YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 713 --dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++.|+.||+.+++.+-...+...+..-.....+.+|+.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 5689999999999882222222333222233467888899999999886
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.79 E-value=2.5e-05 Score=83.19 Aligned_cols=229 Identities=8% Similarity=-0.045 Sum_probs=147.3
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEecCCC---CceeEEeecCCCCeE
Q 004327 493 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 568 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWDl~t~---~~~i~~~~~h~~~V~ 568 (761)
+|+.+. ...|+..|+++.+....+. ....+..++|++++..|+.+ ..++.|..++++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3578999998876655554 34567899999876555544 45689999998751 221222322224568
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEc
Q 004327 569 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 645 (761)
Q Consensus 569 sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~d--g~I~IwDl~t~~~i~~l~ 645 (761)
.+++.+.++.++++-...+.|.++++........+. .......++++|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987767787777778899999998544433333 23567899999988888777653 689999987543332233
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECC
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 722 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~ 722 (761)
..-.....|+|++++..|+.+. .+.|..+|+.... ...+............+++. +..|+.+.. .+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCC
Confidence 3345678999999887777766 6699999997532 23332221223345677775 345555554 4588888876
Q ss_pred CCcE
Q 004327 723 ENKT 726 (761)
Q Consensus 723 ~~~~ 726 (761)
+++.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6553
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=9e-06 Score=97.40 Aligned_cols=268 Identities=8% Similarity=0.018 Sum_probs=171.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec-------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 552 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~-------~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t 552 (761)
..|.++...++|.+.+ |+.+ -|.+||..+.+...... .....|.++...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5699999988887555 4444 69999987765442211 1235699999887765 55666645688899876
Q ss_pred CCceeEEe-------------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----------cCCCe
Q 004327 553 PDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------CQSGA 609 (761)
Q Consensus 553 ~~~~i~~~-------------~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~----------~~~~i 609 (761)
........ .-....|.++....++... .|..++-|..|+........... ....|
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW--IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE--EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE--EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 54311111 0124568999988876433 45556778999987654332211 12347
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEE
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 686 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l---~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~ 686 (761)
.++...+++ .|.+|+.++.|.+||..++...... ......|.+++..+++.+.+...++.|.+||..++ . +.
T Consensus 366 ~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~ 440 (781)
T 3v9f_A 366 SSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-FQ 440 (781)
T ss_dssp EEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-EE
T ss_pred EEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-EE
Confidence 788887764 5677787778999998765432211 12346799999988888777544677999988764 2 22
Q ss_pred Eee---cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEcc-C-----CCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 687 ELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 687 ~l~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h-----~~~V~slafspdg~~LaSgs~DG~I 757 (761)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+| |
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 222 2346788888888876 666666 679999988776553322 1 36799999988887655443355 4
Q ss_pred EEc
Q 004327 758 KIW 760 (761)
Q Consensus 758 ~IW 760 (761)
..|
T Consensus 518 ~~~ 520 (781)
T 3v9f_A 518 GIY 520 (781)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=1.3e-06 Score=90.10 Aligned_cols=191 Identities=9% Similarity=0.060 Sum_probs=134.8
Q ss_pred eEEEEeccCC--cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 512 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 512 ~~~~~l~~h~--~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
+.+.++ .|. .....+.|+ ++.++++.+.+|.|+++|+.+++..... .. .........++++.+++....++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEE
Confidence 344455 333 334688887 4566677777889999999998864433 22 2333322333456777777789999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCEEE
Q 004327 590 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 664 (761)
Q Consensus 590 ~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~~spdg~~La 664 (761)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998765544444 567888888888999999999998887765422 245778887 776665
Q ss_pred EEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004327 665 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 665 sgs-Dg~I~IWdl~s~~~~~~i~~l~~-------------~~~~I~sl~fspdg~~L~sgs~d 713 (761)
... ++.|.+.|..++ +.+..+.. .....+.++|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 779999999988 44444332 12456899999998878777653
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.75 E-value=1.2e-05 Score=86.96 Aligned_cols=237 Identities=9% Similarity=0.014 Sum_probs=152.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCceeE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWDl~t~~~~i~ 558 (761)
+..+|.+..++. +|+.+. ...|+..+++.......+.. ...+..++|++....|+.+ ...+.|..++++.... ..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 445666666644 444443 45688888876655544443 3458899999766655544 4578899999886543 22
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-C-CeEEEEEC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-E-NYISILDV 635 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~-d-g~I~IwDl 635 (761)
.+.........+++.+.++.++++-...+.|.++++........+. .......++++|.++.++.+.. . +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 2222334567899998777888777778899999998544333332 2245789999998787777665 3 78999998
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-
Q 004327 636 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC- 712 (761)
Q Consensus 636 ~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~- 712 (761)
+.......+...-.....|+|++++..|+.+. .+.|..+|+..... .. .+.........+++. ...|+.+..
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~--~~~~~~~~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EE--EEeCCCCCceEEEEE--CCEEEEecCC
Confidence 75433322222344678999999877777666 66899999875321 11 122223456677773 334555554
Q ss_pred CCcEEEEECCCCc
Q 004327 713 YETLELWNMTENK 725 (761)
Q Consensus 713 dg~I~IwDl~~~~ 725 (761)
.+.|..+|..+++
T Consensus 265 ~~~V~~~~~~~G~ 277 (349)
T 3v64_C 265 TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEEccCCC
Confidence 4578888855554
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.71 E-value=4.1e-06 Score=85.60 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=133.9
Q ss_pred eEEEEeccCC--cceEEEEEcCCCCEEEEEeCC--CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 004327 512 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 587 (761)
Q Consensus 512 ~~~~~l~~h~--~~V~~v~fspdg~~Lasgs~D--G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg 587 (761)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-. .......+...++.++...-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCC
Confidence 445555 344 3466899986 4555555554 4899999999875 4443322 22332322333567777777899
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 004327 588 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 662 (761)
Q Consensus 588 ~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~~spdg~~ 662 (761)
.+.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 99999999999999998765544444 567788888888999999999998887765422 356677776 6766
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004327 663 LASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~-------------~~~~I~sl~fspdg~~L~sgs~d 713 (761)
++... ++.|.+.|..++ +.+..+.. .....+.++|+|+++.|++.+..
T Consensus 163 yanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 779999999998 44444431 12356899999999888887764
No 264
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.70 E-value=3.8e-05 Score=82.17 Aligned_cols=265 Identities=8% Similarity=-0.024 Sum_probs=151.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec----cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~----~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
...+.+|.|.+++..+|+ +.+|.| ++..+.++.-..+. .....+.+|.|.+ +. ++.++.++.|.. ...+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE--ECCCC
Confidence 346999999887777774 556765 33344443222221 2244688999976 34 444556665443 22222
Q ss_pred ceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 004327 555 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 629 (761)
Q Consensus 555 ~~i~~~~---~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd~~~Llags~dg~ 629 (761)
....... .+.+.+..+.+.+++ .+++++. ++.|+. ..+.++.-.... ....+..+.+.+++..++ ++.+|.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~-~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVA-VSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEE-EETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEE-EECCCc
Confidence 2233322 233557788877654 4555554 554432 222233222222 234578899999866554 445555
Q ss_pred EEE-EEC--CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeC
Q 004327 630 ISI-LDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHP 702 (761)
Q Consensus 630 I~I-wDl--~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~----~~~~I~sl~fsp 702 (761)
|+. .|- .+.+.+. ......+..+.+.+++.+++++.+|.+++++...+ .....+.. ....+..+.+.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 544 442 3334432 23556789999999998887777888877643222 11111111 223588899988
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEEE-Ec---cCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 703 TFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~~~~~-l~---~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
++. +++++.++.| ++..+.++.-. +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 5555667777 44555554442 22 234678899997544 566777899887653
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=5e-06 Score=85.00 Aligned_cols=186 Identities=11% Similarity=0.108 Sum_probs=128.4
Q ss_pred eEEeecCC--CCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEE
Q 004327 557 LRTFTGHS--TTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 631 (761)
Q Consensus 557 i~~~~~h~--~~V~sl~fsp~g~~llasgs~D--g~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~ 631 (761)
+..+ .|. .....+.|++ +.++.+.+.+ ..|+++|+.+++.+..+..........+...++.|+.... ++.+.
T Consensus 12 ~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 3444 454 3466899986 4677777765 4899999999999999987776655544445667766654 78999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--C---CceEEEEEeCCCC
Q 004327 632 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFP 705 (761)
Q Consensus 632 IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~--~---~~I~sl~fspdg~ 705 (761)
+||.++.+.+.++...... ..++ +++..|+.+. ++.|.++|..+.. .+..+... . ..++.+.|. +|.
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCE
Confidence 9999999999988753322 4555 4566565555 7899999998874 33333321 1 234566665 555
Q ss_pred EEEEEE-cCCcEEEEECCCCcEEE-Ec--c-----------CCCCeeEEEEeCCCCEEEEEEC
Q 004327 706 SLLVIG-CYETLELWNMTENKTLT-LS--A-----------HDKLVSSLAASTVNGMVASASH 753 (761)
Q Consensus 706 ~L~sgs-~dg~I~IwDl~~~~~~~-l~--~-----------h~~~V~slafspdg~~LaSgs~ 753 (761)
|++.. .+..|.+.|..+++++. +. + -....+.|+|+|+++.|+..+.
T Consensus 162 -lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 -LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55555 56799999999999882 22 1 1235789999998876666653
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=1.5e-05 Score=87.50 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=153.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCceeEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~DG~I~VWDl~t~~~~i~~ 559 (761)
..+|.+..+++ +|+.+. ...|+.+++........+.. ...+..++|.+.+..|+ +-...+.|..|+++.... ...
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~ 153 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV 153 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEE
Confidence 34566655533 444443 46788888877655544443 34588999997655555 445678899999886542 222
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc-C-CeEEEEECC
Q 004327 560 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-E-NYISILDVE 636 (761)
Q Consensus 560 ~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~-d-g~I~IwDl~ 636 (761)
+.........+++.+.++.++++-...+.|.++++........+.. ......++++|.++.|+.+.. . +.|+.+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3322345677899887778887777788899999875443333332 245789999998888777765 3 689999987
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-C
Q 004327 637 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-Y 713 (761)
Q Consensus 637 t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-d 713 (761)
...........-.....|+|+|++..|+.+. .+.|..+|+..... .. .+.........+++. +..|+.+.. .
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~--~~~~~~~~P~giav~--~~~ly~td~~~ 308 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF--EDSLYWTDWHT 308 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EE--EECSSCSSEEEEEEE--TTEEEEEETTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EE--EEECCCCCceEEEEE--CCEEEEeeCCC
Confidence 6544333333445678999998877777666 66899999865321 11 222233456677773 334555554 5
Q ss_pred CcEEEEECCCCcEE
Q 004327 714 ETLELWNMTENKTL 727 (761)
Q Consensus 714 g~I~IwDl~~~~~~ 727 (761)
+.|..+|..+++..
T Consensus 309 ~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 309 KSINSANKFTGKNQ 322 (386)
T ss_dssp TEEEEEETTTCCSC
T ss_pred CeEEEEECCCCcce
Confidence 58888886555433
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=1.4e-06 Score=89.88 Aligned_cols=176 Identities=7% Similarity=0.015 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE
Q 004327 566 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL 644 (761)
Q Consensus 566 ~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~i~~l 644 (761)
....+.|+ ++.++++.+.+|.|+++|+.+++.+..+ ........-..++++.|+... .++.+.+||.++.+.+.++
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34688887 3678888888999999999999999888 666655433344555666555 4789999999999999988
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCcEE
Q 004327 645 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLE 717 (761)
Q Consensus 645 ~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~--~~---~~I~sl~fspdg~~L~sgs-~dg~I~ 717 (761)
..... -..++ +|+..|+.+. ++.|.++|..+.. .+..+.. .. ..+..+.|. +|. |++.. .++.|.
T Consensus 133 ~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence 75322 23455 5677777776 8899999998874 3333332 22 234667777 664 66655 466999
Q ss_pred EEECCCCcEEEEcc--------------CCCCeeEEEEeCCCCEEEEEE
Q 004327 718 LWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 718 IwDl~~~~~~~l~~--------------h~~~V~slafspdg~~LaSgs 752 (761)
+.|..+++++.... -....+.|||+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999882211 124679999999876555554
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.64 E-value=4.1e-06 Score=97.31 Aligned_cols=253 Identities=9% Similarity=-0.017 Sum_probs=151.3
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEeccCCc----ceEE-EEEcCCCCEEEEEe------CCCeEEEEecCCCCceeEEeec
Q 004327 494 LATGGHDKKAVLWCTESFTVKSTLEEHTQ----WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 494 Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~----~V~~-v~fspdg~~Lasgs------~DG~I~VWDl~t~~~~i~~~~~ 562 (761)
|++++.|+.|..+|..+++.+........ .+++ ..+. ++ .+++++ .+|.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 88888999999999999999877643220 1221 1111 34 455554 3899999999998864333222
Q ss_pred CCC------------------------------------Ce-EEEEEcCCCCcEEEEEeC---------------CCcEE
Q 004327 563 HST------------------------------------TV-MSLDFHPSKEDLLCSCDN---------------NSEIR 590 (761)
Q Consensus 563 h~~------------------------------------~V-~sl~fsp~g~~llasgs~---------------Dg~I~ 590 (761)
... .+ ..+++.+..+.+++..++ .+.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 110 01 134556665544433332 14899
Q ss_pred EEECCCCeeeeEEecCCC----------eeEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC--------
Q 004327 591 YWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK-------- 648 (761)
Q Consensus 591 vWDl~t~~~~~~~~~~~~----------i~~l~fs-pd~---~~Llags~dg~I~IwDl~t~~~i~~l~~h~-------- 648 (761)
.+|.++++.+..+..... ..-+... .++ ..++.++.+|.|+++|.++++.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 999999999988775321 1112222 455 346667789999999999999887664211
Q ss_pred -----CCE--------------------------EEEEEcCCCCEEEEEe------------------------------
Q 004327 649 -----NQV--------------------------HSVCWNTSGEYLASVS------------------------------ 667 (761)
Q Consensus 649 -----~~I--------------------------~sl~~spdg~~Lasgs------------------------------ 667 (761)
.++ ..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 111 1356777666555432
Q ss_pred ----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCC-CC
Q 004327 668 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 735 (761)
Q Consensus 668 ----------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~ 735 (761)
++.|..||+.++ +.+...... .+...-.+...+..+++++.|+.|+.||.++++.+ .+.... ..
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 246777787776 333333211 11111123335667888999999999999999988 333222 22
Q ss_pred eeEEEEeCCCC-EEEEEE
Q 004327 736 VSSLAASTVNG-MVASAS 752 (761)
Q Consensus 736 V~slafspdg~-~LaSgs 752 (761)
..-+.+..+|+ ||++.+
T Consensus 518 ~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 518 GYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp SCCEEEEETTEEEEEEEE
T ss_pred eccEEEEeCCEEEEEEEc
Confidence 22355566776 454443
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=5.3e-06 Score=92.57 Aligned_cols=233 Identities=9% Similarity=0.082 Sum_probs=140.4
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 004327 523 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 597 (761)
Q Consensus 523 ~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg----~I~vWDl~t~ 597 (761)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........++|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899998 45667666665889999988644 3444445566889999999876776665333 24444433 3
Q ss_pred eee--eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 004327 598 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 671 (761)
Q Consensus 598 ~~~--~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I 671 (761)
... ..+........++++|+.+.|+++. .++.|..||..++....... +.......|+|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345577889999545555555 56899999998776522222 1224567899999999666665 6789
Q ss_pred EEEECCCCC-CceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEEc-CCcEEEEECCCCc
Q 004327 672 RVWSIGSGS-KGECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIGC-YETLELWNMTENK 725 (761)
Q Consensus 672 ~IWdl~s~~-~~~~i~~l~~~---------------~~~I~-sl~fs--------pdg~~L~sgs~-dg~I~IwDl~~~~ 725 (761)
.+++..... ....+..+.+. -.... .+++. +++. |+++.. .+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 998875321 00001111111 01122 45553 2344 555554 45899998 4565
Q ss_pred EEEEccC---------C---------CCeeEEEEeCC-CCEEEEEECCCeEEEc
Q 004327 726 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW 760 (761)
Q Consensus 726 ~~~l~~h---------~---------~~V~slafspd-g~~LaSgs~DG~I~IW 760 (761)
..++.+. . .....|+++++ +.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 25889999995 4444444455677654
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=1e-05 Score=93.85 Aligned_cols=256 Identities=10% Similarity=0.020 Sum_probs=154.4
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEeccCCc----ceE-E-EEEcC--CCC-EEEEEe------CCCeEEEEecCCCCc
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY 555 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~----~V~-~-v~fsp--dg~-~Lasgs------~DG~I~VWDl~t~~~ 555 (761)
+..|++++.|+.|..+|.++++.+..+..... .+. . +.... +++ .+++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999877643321 111 1 11111 233 566654 378999999998875
Q ss_pred eeEEeecCCCC-----------------------------------------eEEEEEcCCCCcEEEEEeC---------
Q 004327 556 SLRTFTGHSTT-----------------------------------------VMSLDFHPSKEDLLCSCDN--------- 585 (761)
Q Consensus 556 ~i~~~~~h~~~-----------------------------------------V~sl~fsp~g~~llasgs~--------- 585 (761)
... ....... -..+++.|..+.+++..++
T Consensus 197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 332 2211000 0134566665555544431
Q ss_pred ----------C----CcEEEEECCCCeeeeEEecCCC-------eeE-EEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 004327 586 ----------N----SEIRYWSINNGSCAGVFKCQSG-------ATQ-MRFQ---PRLG---RILAAAIENYISILDVET 637 (761)
Q Consensus 586 ----------D----g~I~vWDl~t~~~~~~~~~~~~-------i~~-l~fs---pd~~---~Llags~dg~I~IwDl~t 637 (761)
| +.|..+|.++++.+..+..... +.. +.+. .+++ .+++++.+|.|+++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 6899999999999988764211 111 2222 3553 577788899999999999
Q ss_pred CeEEEEEcCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 004327 638 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 667 (761)
Q Consensus 638 ~~~i~~l~~h~~--~I-------------------------------------------~sl~~spdg~~Lasgs----- 667 (761)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245666554444322
Q ss_pred -----------------------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 004327 668 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 718 (761)
Q Consensus 668 -----------------------------Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 718 (761)
++.|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467888999887 3333333221 2222122234667888999999999
Q ss_pred EECCCCcEE-EEccCCCCee--EEEEeCCCC-EEEEEE
Q 004327 719 WNMTENKTL-TLSAHDKLVS--SLAASTVNG-MVASAS 752 (761)
Q Consensus 719 wDl~~~~~~-~l~~h~~~V~--slafspdg~-~LaSgs 752 (761)
||.++++.+ .+.. ...+. -+.|..+|+ ||++.+
T Consensus 512 ~D~~tG~~lW~~~~-~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 512 FDAKSGKELWKFQT-GSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEecC-CCCcccCceEEEECCEEEEEEEc
Confidence 999999998 3333 22222 266667786 454443
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.62 E-value=7.6e-05 Score=79.34 Aligned_cols=219 Identities=9% Similarity=0.017 Sum_probs=140.6
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-cCCCe
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGA 609 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t----~~~~~~~~-~~~~i 609 (761)
+|+.+. ...|+..|+..... ...+ .....+..++|++.++.++++-..++.|..+++.. ......+. .....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987653 2233 33456889999998778887877789999999886 22222222 12356
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004327 610 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 685 (761)
Q Consensus 610 ~~l~fspd~~~Llags-~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IWdl~s~~~~~~i 685 (761)
..+++++.++.|+.+. ..+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++.... ...+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 7899998767776665 468999999986544444443445678999999776665555 3 688888875431 1111
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~---~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
....-.....++|++++..|+++... +.|..+|+.......+. ........+++. .+.++++-...+.|..+
T Consensus 159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 12234567899999988888888765 48999999765443332 123456788885 34444444455666654
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=4.6e-05 Score=82.40 Aligned_cols=228 Identities=9% Similarity=0.034 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004327 524 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 603 (761)
Q Consensus 524 V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~ 603 (761)
.+|.+..++ .+|+.+ ....|+..++.... ...+......+..++|++.++.++++-...+.|+.+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~--~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSE--YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCC--EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCe--eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555553 344444 34458888887544 23333334558899999887788877777889999999866544433
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEECCC
Q 004327 604 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 678 (761)
Q Consensus 604 ~~-~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IWdl~s 678 (761)
.. ......+++.+.++.|+.+.. .+.|.+++++.......+.........++++|.+.+|+... + +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 234678999987777766655 67999999986544444444445678999999776666655 4 6888888865
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEE-EccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004327 679 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 756 (761)
Q Consensus 679 ~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-l~~h~~~V~slafspdg~~LaSgs~DG~ 756 (761)
... .......-.....++|++++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 321 11112234457899999988888888764 489999987654433 33334567788883 3334444334555
Q ss_pred EEE
Q 004327 757 VKI 759 (761)
Q Consensus 757 I~I 759 (761)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.60 E-value=2.6e-05 Score=83.24 Aligned_cols=221 Identities=7% Similarity=-0.006 Sum_probs=142.4
Q ss_pred CCeEEEEEcCCCe--EEEEeccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 004327 500 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 576 (761)
Q Consensus 500 Dg~I~VWdl~t~~--~~~~l~~h~~~V~~v~fspdg~~L-asgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g 576 (761)
...|+.++++... ....+. ....+..++|.+.+..| ++-...+.|..++++........+...-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678889987653 222222 22356789999855544 4555678899999886532222223233456789998877
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004327 577 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 653 (761)
Q Consensus 577 ~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~~h~~~I~s 653 (761)
+.++++-...+.|.++++........+ ........++++|.++.|+.+.. .+.|..++++.......+...-.....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 778877777889999998754333332 22345789999998888877774 578999998754333323333446789
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCCcE
Q 004327 654 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 726 (761)
Q Consensus 654 l~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~~~ 726 (761)
|+|++++..|+.+. .+.|..+|+..... ..+. .........+++.. ..++.+.. .+.|..+|..+++.
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc
Confidence 99999877777666 67999999875322 2222 22334556777753 34555544 45888899866653
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.58 E-value=0.00015 Score=79.82 Aligned_cols=230 Identities=8% Similarity=-0.040 Sum_probs=150.7
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 004327 493 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 568 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWDl~t~~---~~i~~~~~h~~~V~ 568 (761)
+|+.+. ...|+..+++.......+. ....+..|+|++....|+.+ ...+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 454444 4789999988765554443 44678899999866655555 456889999987521 11223333445678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEc
Q 004327 569 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 569 sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~ 645 (761)
.+++.+.++.++++-...+.|.+.+++.......+. .......++++|.+++|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777888777778899999998655444443 3345789999998888877764 3789999988654444344
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECC
Q 004327 646 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 722 (761)
Q Consensus 646 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~ 722 (761)
..-.....|++++++..|+.+. .+.|..+|+..... ..+......-.....+++ ++..|+.+.. .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence 3445788999999888777776 66899999875422 222222122234456666 3445555554 4588889866
Q ss_pred CCcEE
Q 004327 723 ENKTL 727 (761)
Q Consensus 723 ~~~~~ 727 (761)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 66443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.58 E-value=3.7e-05 Score=84.33 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=148.2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004327 525 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 604 (761)
Q Consensus 525 ~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~ 604 (761)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.|++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 3344444 345688888876543 33333345688999998877888777778899999998765444333
Q ss_pred c-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEECCCC
Q 004327 605 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 679 (761)
Q Consensus 605 ~-~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IWdl~s~ 679 (761)
. ......+++++.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+.+. + +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234577899987777766655 57899999876544444444445678999999777666665 4 67888888653
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEE-EccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 680 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 680 ~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-l~~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
. ........-.....++|++++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 111222234457899999988888888765 489999987654443 33334567888883 34444444455666
Q ss_pred EEc
Q 004327 758 KIW 760 (761)
Q Consensus 758 ~IW 760 (761)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=5.2e-06 Score=99.22 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=136.9
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEEC-CC----eEEEEEcCCC-eEEE-EeccCCcceEEEEEcCCCCEEEEEeCC-----
Q 004327 477 ASTS-KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD----- 542 (761)
Q Consensus 477 ~H~~-~V~~lafS-pdg~~Lasgs~-Dg----~I~VWdl~t~-~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~D----- 542 (761)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 67889999 99998886643 22 5999999998 6321 111 123568999999988877765
Q ss_pred CeEEEEecCCCCce-eEEee-cCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC--ee--eeEEec-CCCeeEEE
Q 004327 543 RTVRVWDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC--AGVFKC-QSGATQMR 613 (761)
Q Consensus 543 G~I~VWDl~t~~~~-i~~~~-~h~~~V~sl~fsp~g~~llasgs~--Dg~I~vWDl~t~--~~--~~~~~~-~~~i~~l~ 613 (761)
..|++|++.++... ...+. ........+.|+|+++.++++... ...|+++|+.++ .. ...... ......+.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 36888888775422 22332 223456788999999888877643 446888999875 22 222221 12334444
Q ss_pred EecCCCEEEEEEcC-----CeEEEEECCCCeEEEE-EcCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEC-----
Q 004327 614 FQPRLGRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI----- 676 (761)
Q Consensus 614 fspd~~~Llags~d-----g~I~IwDl~t~~~i~~-l~~h~~--~I~sl~~spdg~~Lasg-s-Dg--~I~IWdl----- 676 (761)
|+. ++.|+..+.. ..|.++|+.+...... +..+.. .+..+.+. +..|+.. . ++ .|+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDG 403 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTS
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccc
Confidence 443 5666665543 2788888875311111 222333 34555554 4455444 4 77 5666675
Q ss_pred --CCCCCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcCC---cEEEEECCCCcEE
Q 004327 677 --GSGSKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCYE---TLELWNMTENKTL 727 (761)
Q Consensus 677 --~s~~~~~~i~~l~~~~-~~I~sl~f----spdg~~L-~sgs~dg---~I~IwDl~~~~~~ 727 (761)
.++. .+..+.... ..+..+.+ ++++..+ ++.++.. .++.+|+.+++..
T Consensus 404 ~~~~g~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 404 VFKAGT---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp CCCTTT---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cccCCc---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 2221 022222111 12233322 3455444 4444432 6888888877654
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=3.9e-05 Score=79.23 Aligned_cols=199 Identities=11% Similarity=0.147 Sum_probs=131.9
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 636 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~--~~i~~l~fspd~~~Llags~dg~I~IwDl~ 636 (761)
.+.+-...+..++|+|+++.++++...++.|...|+. ++.++.+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455567899999999988888888889999999998 8888887654 467889999886555554457899999876
Q ss_pred CCe---EEEEEc------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------cCCCceEEEE
Q 004327 637 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 699 (761)
Q Consensus 637 t~~---~i~~l~------~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-------~~~~~I~sl~ 699 (761)
... .+.... ..+.....|+|+|++..|+++. .+...||.+........+..+. ..-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 1344578999999997777776 3333444443100001111111 1234578999
Q ss_pred EeCCCCEEEEEEcCC-cEEEEECCCCcEE-E--Ecc-C------CCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 700 FHPTFPSLLVIGCYE-TLELWNMTENKTL-T--LSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 700 fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~--l~~-h------~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
++|....+++.+... .|.++|.... .+ . +.. . -.....|+|.++|+++++ +.-..+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 999887777776655 8889997655 44 2 221 1 125689999999985554 666666655
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=4.7e-05 Score=84.80 Aligned_cols=234 Identities=11% Similarity=0.143 Sum_probs=143.1
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC-C----eEEEEecCCCC
Q 004327 481 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 554 (761)
Q Consensus 481 ~V~~lafSp-dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-G----~I~VWDl~t~~ 554 (761)
....++|+| ++..|+++...+.|+.+|++++....... .......|+|++++++|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45567666655889999998766554443 45568899999999977666542 1 34444433 22
Q ss_pred ce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEc-CCeE
Q 004327 555 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 630 (761)
Q Consensus 555 ~~-i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~--~~i~~l~fspd~~~Llags~-dg~I 630 (761)
.. ...+.. ......++++|++..++++-..++.|+.|+...+.....+... .....++|+|++++|+++.. .+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 122222 2346778899955677767667889999999877653333332 34788999999997666664 6789
Q ss_pred EEEECCC--CeE--EEEEcCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004327 631 SILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 681 (761)
Q Consensus 631 ~IwDl~t--~~~--i~~l~~h---------------~~~I~-sl~~s--------pdg~~Lasgs-Dg~I~IWdl~s~~~ 681 (761)
..|+... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. ++
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-- 371 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-- 371 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence 9987653 221 1111111 01123 45553 3355555444 678888883 33
Q ss_pred ceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCcEEEEECC
Q 004327 682 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 722 (761)
Q Consensus 682 ~~~i~~l~~~------------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~ 722 (761)
. +..+.+. -.....+++++++..|+++.. ++.|+.++++
T Consensus 372 -~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 -R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222111 124678999996555666655 4478777754
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=3.7e-05 Score=85.80 Aligned_cols=233 Identities=14% Similarity=0.122 Sum_probs=138.7
Q ss_pred cceEEEEEcCC--CCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEECC
Q 004327 522 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSIN 595 (761)
Q Consensus 522 ~~V~~v~fspd--g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D---g-~I~vWDl~ 595 (761)
.....|+|.|+ ...|+.+...+.|+.+|..++. +..+.........++|+++++ ++++.... . .+..++..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 34678999984 4556666554889999987654 444444556689999999987 66554321 1 23333332
Q ss_pred CCee-eeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE-cC-CCCCEEEEEEcCCCCEEEEEe--CC
Q 004327 596 NGSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DE 669 (761)
Q Consensus 596 t~~~-~~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~t~~~i~~l-~~-h~~~I~sl~~spdg~~Lasgs--Dg 669 (761)
.+.. ...+........++++|+.+.|+++. .++.|+.||..++.....+ .. ....-..++|+|++++|+.+. .+
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 2111 11222334567789999445555554 5688999999877652222 21 222335799999999666666 67
Q ss_pred eEEEEECCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEE-cCCcEEEEECC
Q 004327 670 LVRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIG-CYETLELWNMT 722 (761)
Q Consensus 670 ~I~IWdl~s--~~~~~~i~~l~~~---------------~~~I~sl~f---------spdg~~L~sgs-~dg~I~IwDl~ 722 (761)
.|+.+++.. +.. .....+.+. -.....+++ .+++. |+++. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~- 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP- 372 (433)
T ss_dssp EEEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-
T ss_pred EEEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-
Confidence 899988753 211 101111111 123566888 56665 55554 4568999985
Q ss_pred CCcEEEEccC------------------CCCeeEEEEe-CCCCEEEEEECCCeEEEc
Q 004327 723 ENKTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 760 (761)
Q Consensus 723 ~~~~~~l~~h------------------~~~V~slafs-pdg~~LaSgs~DG~I~IW 760 (761)
++...++.+. -.....|+++ +++.++++-...+.|+.+
T Consensus 373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5555544322 1247889999 555555554456677764
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.47 E-value=0.00013 Score=77.81 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=141.1
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEE-ecCCCeeEE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF-KCQSGATQM 612 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~-~~~~~i~~l 612 (761)
+|+.+ ....|+.++++...............+..++|++.++.++++-...+.|..+++..+... ..+ ..-.....+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 34443 356799999987542222222223457789999977788877777889999999865322 122 222456789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEEEe
Q 004327 613 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 613 ~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l 688 (761)
++.+.++.|+.+.. .+.|.+++++.......+.........++++|.+.+|+.+. .+.|..+++..... ..+ .
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~--~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII--I 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE--E
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE--E
Confidence 99987677766654 67999999986543333434455678999999766666555 35788888764321 111 2
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEE-ccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 689 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 689 ~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l-~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
...-.....++|++++..|+.+... +.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 2233456899999988888888764 5899999876544433 23445677888753 3344443345566544
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00046 Score=71.13 Aligned_cols=202 Identities=11% Similarity=0.086 Sum_probs=136.4
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEcCCCeEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004327 473 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 550 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl 550 (761)
+.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 56777777899999999766 45567788999999998 787777632 2256788999988877777667789999988
Q ss_pred CCCCc--eeEEee------cCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCeeeeEEe--------cCCCeeEE
Q 004327 551 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 612 (761)
Q Consensus 551 ~t~~~--~i~~~~------~h~~~V~sl~fsp~g~~llasgs~Dg-~I~vWDl-~t~~~~~~~~--------~~~~i~~l 612 (761)
..... .+.... ........|+|+|.++.++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 13445689999999888887666554 5555551 1111122221 12357899
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEEC
Q 004327 613 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 676 (761)
Q Consensus 613 ~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~IWdl 676 (761)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ..-..|+|+++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99998888877776 468889997754 444333221 2568999999998666644556666653
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00022 Score=78.59 Aligned_cols=219 Identities=9% Similarity=0.017 Sum_probs=142.7
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 609 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~----~~~~~~~-~~~~i 609 (761)
+|+.+. ...|+..+++.... ..+......+..++|++.++.++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46788899886553 3333445678999999987788877777889999998752 2222222 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeE
Q 004327 610 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 685 (761)
Q Consensus 610 ~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i 685 (761)
..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+... .+.|...++..... .
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---Y 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---E
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---E
Confidence 78999986666666654 68999999987655555544455688999999776666555 35788888865321 1
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
..+...-.....+++++++..|+.+... +.|..+|+.......+.. .-.....|++.. +.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEE
Confidence 1222233567899999988888888764 489999997665443322 234566777732 3344444445556544
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.45 E-value=5.6e-05 Score=81.10 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=131.2
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC----CC---EEEEEeC---CCeEEEEecCCCCceeEE
Q 004327 490 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 559 (761)
Q Consensus 490 dg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd----g~---~Lasgs~---DG~I~VWDl~t~~~~i~~ 559 (761)
...+++.....+-+.+||+ +++.+..+.. +.++.|..-|+ ++ ++++... +.+|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666677889999999 8888888854 56777777663 22 2333333 578999987532223444
Q ss_pred eec------CC-CCeEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCeeeeEEecCCCeeEEEEecCCCEEE
Q 004327 560 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 622 (761)
Q Consensus 560 ~~~------h~-~~V~sl~f--sp~-g~~llasgs~Dg~I~vWDl~-------t~~~~~~~~~~~~i~~l~fspd~~~Ll 622 (761)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|...+.+..+.+.+..++|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 422 12 56777888 664 44467777888999999982 346788888888999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEc-CC-CCCEEEEEE--cCCCC-EEEEEe--CCeEEEEECC
Q 004327 623 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG 677 (761)
Q Consensus 623 ags~dg~I~IwDl~-----t~~~i~~l~-~h-~~~I~sl~~--spdg~-~Lasgs--Dg~I~IWdl~ 677 (761)
++-.+..|..||.+ +++.+..+. ++ ...+..|++ .++++ ||++++ ++.+.+||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888865 345665542 22 236888887 45555 677666 7799999996
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=1.9e-05 Score=94.41 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=115.0
Q ss_pred ceEEEEEc-CCCCEEEEEeC-CC----eEEEEecCCC-CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEE
Q 004327 523 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 591 (761)
Q Consensus 523 ~V~~v~fs-pdg~~Lasgs~-DG----~I~VWDl~t~-~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D----g~I~v 591 (761)
.+...+|+ |||++||.+.. +| .|+++|+.++ ......+. .....++|+|+++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 33 5999999987 52111111 1235688999998888776532 36888
Q ss_pred EECCCCee--eeEEec--CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCC--eE--EEEEcCCCCCEEEEEEcCCC
Q 004327 592 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ--VC--RLKLQGHKNQVHSVCWNTSG 660 (761)
Q Consensus 592 WDl~t~~~--~~~~~~--~~~i~~l~fspd~~~Llags~---dg~I~IwDl~t~--~~--i~~l~~h~~~I~sl~~spdg 660 (761)
+++.++.. ...+.. ......+.|+||+++|+.... ...|+++|+.++ .. ............++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 233567899999999887764 347889999875 22 22223344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEE-EEEcCC--cEEEEEC
Q 004327 661 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLL-VIGCYE--TLELWNM 721 (761)
Q Consensus 661 ~~Lasgs-D--g--~I~IWdl~s~~~~~~i~~l~~~~~--~I~sl~fspdg~~L~-sgs~dg--~I~IwDl 721 (761)
.+++... + + .|.++++.++.....+ +..+.. .+..+.+ .+.+|+ +...++ .|+++|+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777777642111110 122222 3444444 445554 445556 5677785
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.00027 Score=84.62 Aligned_cols=239 Identities=8% Similarity=-0.038 Sum_probs=152.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCC---ceeE
Q 004327 483 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLR 558 (761)
Q Consensus 483 ~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~DG~I~VWDl~t~~---~~i~ 558 (761)
+|.++.+. .+|+.+ ....|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++.... ....
T Consensus 388 ~C~~~~~~-p~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSC-CEEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeecccc-cccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 34444332 244443 34678888887665544443 445678999998555554 44556789999987531 1122
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEEC
Q 004327 559 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV 635 (761)
Q Consensus 559 ~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~d--g~I~IwDl 635 (761)
.+.........|++.+.++.|+++-...+.|.+.++........+. .......|+++|..++|+.+... +.|.++++
T Consensus 465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3332445677899998888888888888999999998554433333 23457899999988888877643 68999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004327 636 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 713 (761)
Q Consensus 636 ~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d 713 (761)
........+...-.....|++++.+..|+.+. .+.|..+++..... ..+......-.....+++. +.+|+++...
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 86655544544446789999998877777776 56899999865422 2222211112234455553 4467776654
Q ss_pred -CcEEEEECCCCcEE
Q 004327 714 -ETLELWNMTENKTL 727 (761)
Q Consensus 714 -g~I~IwDl~~~~~~ 727 (761)
+.|...|..+++.+
T Consensus 622 ~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 622 NEAIFSANRLTGSDV 636 (791)
T ss_dssp TTEEEEEETTTCCCC
T ss_pred CCEEEEEeCCCCcce
Confidence 57888887666443
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.34 E-value=0.00014 Score=80.96 Aligned_cols=234 Identities=10% Similarity=0.058 Sum_probs=140.6
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC----C-eEEEEecCCC
Q 004327 481 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----R-TVRVWDTENP 553 (761)
Q Consensus 481 ~V~~lafSpd--g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D----G-~I~VWDl~t~ 553 (761)
....++|+|+ ...|+.+...+.|+.+|..++...... .......+|+|+++++ |+++... . .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 445555554489999999887766544 3445689999999999 5544432 1 2333333322
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEecC--CCeeEEEEecCCCEEEEEEc-CCe
Q 004327 554 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQ--SGATQMRFQPRLGRILAAAI-ENY 629 (761)
Q Consensus 554 ~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~~~~--~~i~~l~fspd~~~Llags~-dg~ 629 (761)
......+. .-.....++++|++..++++-..++.|+.+|..++... ..+... .....++|+|++++|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11111222 23445678899955567666667788999999877662 222221 12346999999997776665 578
Q ss_pred EEEEECC--CCeE--EEEEcCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEECCCCC
Q 004327 630 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS 680 (761)
Q Consensus 630 I~IwDl~--t~~~--i~~l~~h---------------~~~I~sl~~---------spdg~~Lasgs-Dg~I~IWdl~s~~ 680 (761)
|+.+|.. ++.. ...+.+. -.....+++ .+++.++++-. .+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 2321 1111111 123567999 66776666655 678999885 22
Q ss_pred CceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCcEEEEECC
Q 004327 681 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 722 (761)
Q Consensus 681 ~~~~i~~l~~~------------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~ 722 (761)
.+..+.+. -.....++++|....|+++.. ++.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 123577888844444555554 4477777654
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00018 Score=81.02 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=138.0
Q ss_pred ceEEEEEcC-CCCEEEEEeC-CCeEEEEecCCCCceeEEeecC----CCCeEEEEE-------cCCCCcEEEEEeCCC--
Q 004327 523 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 587 (761)
Q Consensus 523 ~V~~v~fsp-dg~~Lasgs~-DG~I~VWDl~t~~~~i~~~~~h----~~~V~sl~f-------sp~g~~llasgs~Dg-- 587 (761)
....|+|.| +...|+++.. .+.|++.|+.++. +..+... ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3555555544 4678888888654 3333221 235789999 999877776665542
Q ss_pred ----cEEEEECCC-Ceee-----eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 004327 588 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 640 (761)
Q Consensus 588 ----~I~vWDl~t-~~~~-----~~~~~~~~i~~l~fspd~~~Llags-~dg~I~IwDl~-------t~~~--------- 640 (761)
.|.+++... +... ..+........++++|++++|+++. .++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366776443 2221 2222234566789999767766665 46789999987 4443
Q ss_pred -----EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCC----ceeEEEeecCC------------CceE-
Q 004327 641 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTG------------NKFH- 696 (761)
Q Consensus 641 -----i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~----~~~i~~l~~~~------------~~I~- 696 (761)
+... +.....+.|+|+|+|++|+.+. ...|+.++...... ...+.-..+.. ....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 2222 2334568999999999766665 66888876543211 01111110000 1233
Q ss_pred EEEEe-------CCCCEEEEEE-cCCcEEEEECCCCcEEEEccC------------------------CCCeeEEEEeCC
Q 004327 697 SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTV 744 (761)
Q Consensus 697 sl~fs-------pdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h------------------------~~~V~slafspd 744 (761)
.++.. .++. |+++. ....|+.++ .++...++.+. -.....|+++++
T Consensus 377 gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 44554 3454 55554 456899999 46665555332 123678999997
Q ss_pred -CCEEEEEECCCeEEEc
Q 004327 745 -NGMVASASHDKCVKIW 760 (761)
Q Consensus 745 -g~~LaSgs~DG~I~IW 760 (761)
+.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 5555544456677765
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=3.7e-05 Score=90.31 Aligned_cols=228 Identities=7% Similarity=-0.032 Sum_probs=128.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEecCCCCceeE-Eee-cCCCCeEEEEEcCCCCcEEEEEe-CCCcEE
Q 004327 526 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TFT-GHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 590 (761)
Q Consensus 526 ~v~fsp-dg~~Lasgs~DG-----------~I~VWDl~t~~~~i~-~~~-~h~~~V~sl~fsp~g~~llasgs-~Dg~I~ 590 (761)
++++.+ ++++++.|+.+. .+.+||+.++..... ... .+.....++++..++ .+++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 566677 888888887643 588999988764221 221 223334456777775 4555665 566899
Q ss_pred EEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----cCCCCCEEEEEEcC
Q 004327 591 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 658 (761)
Q Consensus 591 vWDl~t~~~~~~~~~~--~~i~~l~fspd~~~Llags-~d-----g~I~IwDl~t~~~i~~l----~~h~~~I~sl~~sp 658 (761)
+||..+.+....-... ..-.++++.+++..+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877655432222 1234566667888888888 34 47999999887543320 00000000011223
Q ss_pred CCCEEEEEe-C---------CeEEEEECCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 004327 659 SGEYLASVS-D---------ELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 714 (761)
Q Consensus 659 dg~~Lasgs-D---------g~I~IWdl~s~~~~~~i~~l~~------~~~~I~sl~fsp-dg~~L~sgs~dg------- 714 (761)
++..++.++ + ..+..||..+............ ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344334333 3 4678888876532211111111 011234445544 666667766432
Q ss_pred ----cEEEEECCCCcEEEEc---cCCCC-eeEEEEeCCCCEEEEEECC
Q 004327 715 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 754 (761)
Q Consensus 715 ----~I~IwDl~~~~~~~l~---~h~~~-V~slafspdg~~LaSgs~D 754 (761)
.|.+||..+.....+. .+... -.++++.+++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766442 12222 2344566899999999865
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.23 E-value=0.001 Score=79.56 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=140.3
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 609 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~----~~~~~~~-~~~~i 609 (761)
+|+.+ ....|+..++..... ..+......+..|+|++..+.++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44443 445688888876543 3333345678899999977788877777889999998753 2222332 23456
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004327 610 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 685 (761)
Q Consensus 610 ~~l~fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IWdl~s~~~~~~i 685 (761)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... + +.|.+.++.... ..
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~---~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---eE
Confidence 78999988877777665 68999999987655444444555689999999866666655 3 678888886532 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEcc---CCCCeeEEEEeCCCCEEEEEE-CCCeEE
Q 004327 686 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 758 (761)
Q Consensus 686 ~~l~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~slafspdg~~LaSgs-~DG~I~ 758 (761)
..+...-.....|++++....|+++... +.|..+++.......+.. .-....+|++. +.+|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2223334578899999888888888764 489999997765543332 22345566664 33454444 334554
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.20 E-value=0.0011 Score=77.27 Aligned_cols=219 Identities=9% Similarity=0.009 Sum_probs=145.3
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 613 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-~~i~~l~ 613 (761)
+|+.+ ....|+..++++...........-..+..|+|++.++.++++-..++.|+.+++........+... ..+..++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456799999987553222222233568899999988888888778899999999865444444322 3577899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCCCCceeEEEee
Q 004327 614 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 689 (761)
Q Consensus 614 fspd~~~Llags~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~~~~~~i~~l~ 689 (761)
+++.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... ..+.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~--- 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV--- 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE---
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE---
Confidence 9988777777665 57999999976543333333445678999999665665555 45788888765422 2221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEc
Q 004327 690 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW 760 (761)
Q Consensus 690 ~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs-~DG~I~IW 760 (761)
..-.....+++++++..|+.+... +.|..+|+.......+.........|++.. + .|+.+. ..+.|...
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERA 233 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEE
Confidence 245567899999998888888765 489999997755443334445567888765 3 444444 45666543
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.00078 Score=75.91 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=145.4
Q ss_pred CeEEEEEcC-CCCEE-EEEECCCeEEEEEcCCCeEEEEeccC---CcceEEEEE-------cCCCCEEEEEeCCC-----
Q 004327 481 KVESCHFSP-DGKLL-ATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 543 (761)
Q Consensus 481 ~V~~lafSp-dg~~L-asgs~Dg~I~VWdl~t~~~~~~l~~h---~~~V~~v~f-------spdg~~Lasgs~DG----- 543 (761)
....|+|+| +...| ++-...+.|++.|.+++.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444 44444577999999887766555332 235899999 99999777776554
Q ss_pred --eEEEEecCC-CCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCee----------
Q 004327 544 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 599 (761)
Q Consensus 544 --~I~VWDl~t-~~~~----i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~-------t~~~---------- 599 (761)
.|.+++... +... ...+... .....++++|++..|+++...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443 1221 0222222 2346788999878888888888999999997 5543
Q ss_pred -e-eEEec--CCCeeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCeEE--EEEcCC---C------------CCEE-EE
Q 004327 600 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVCR--LKLQGH---K------------NQVH-SV 654 (761)
Q Consensus 600 -~-~~~~~--~~~i~~l~fspd~~~Llags~-dg~I~IwDl--~t~~~i--~~l~~h---~------------~~I~-sl 654 (761)
. ..+.. ......++|+|+++.|+++.. ...|+.+|. .++... ..+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 12222 234678999999997666655 578888654 443320 122111 1 1234 45
Q ss_pred EEc-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC------------------------CCceEEEEEeC
Q 004327 655 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 702 (761)
Q Consensus 655 ~~s-------pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~------------------------~~~I~sl~fsp 702 (761)
+.. .++.++++-. ...|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4555555554 779999984 33 22232221 12356788888
Q ss_pred CCCEEEEEEc-CCcEEEEECCCCcEE
Q 004327 703 TFPSLLVIGC-YETLELWNMTENKTL 727 (761)
Q Consensus 703 dg~~L~sgs~-dg~I~IwDl~~~~~~ 727 (761)
+...|+++.. +..|+.+++.....+
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 7334555555 448888888766544
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.14 E-value=0.006 Score=64.44 Aligned_cols=248 Identities=9% Similarity=0.151 Sum_probs=155.1
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
+..|.|.|+.+...+.+..-. --+.-.+|..+.||.-. ..++.|+|+++... ++.+.- ...|..=.|..+. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~-~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSS-EE
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhh-hcceec-CCccEEEEecCCC-eE
Confidence 347888999876544322111 11344588888777765 67899999998543 555543 4567777887653 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEecC-----CCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004327 580 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t-~~~~~~~~~~-----~~i~~l~fspd~~~Llags~-------dg~I~IwDl~t~~~i~~l~~ 646 (761)
.+.+ +..|+-|++.. ..+++.+..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 197 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 197 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeee
Confidence 3333 56899999974 4566666643 34677788899998877653 3678899988654 344667
Q ss_pred CCCCEEEEEEcCC---CCEEEEEeC----CeEEEEECCCCC--C----ceeEEEeec---CCCceEEEEEeCCCCEEEEE
Q 004327 647 HKNQVHSVCWNTS---GEYLASVSD----ELVRVWSIGSGS--K----GECIHELSC---TGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 647 h~~~I~sl~~spd---g~~LasgsD----g~I~IWdl~s~~--~----~~~i~~l~~---~~~~I~sl~fspdg~~L~sg 710 (761)
|......+.+..+ ..+++.+.. ++++|.++.... . .+.+..+.. ..+-..++.+++....++..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 7554433332211 124444442 589999985531 1 111221211 23445788899999999999
Q ss_pred EcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 711 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
+..|.|++||+.++.++ .-.-....|...+-+.+..=++.....|.|
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 99999999999999988 333444555555544443334444455554
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.12 E-value=0.00076 Score=78.62 Aligned_cols=222 Identities=7% Similarity=-0.010 Sum_probs=137.7
Q ss_pred CCeEEEEEcCCCe-EEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 004327 500 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 577 (761)
Q Consensus 500 Dg~I~VWdl~t~~-~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~ 577 (761)
...|++.+++... ....+...-..+..|+|++.+..|+.+. ..+.|..++++........+...-.....+++.+.++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 5678888887643 2222333345678999998766666554 4678999998764321233333335688999999878
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSV 654 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~~h~~~I~sl 654 (761)
.++++-...+.|.+.++........+ ..-.....++++|.+++|+.+.. .+.|...++............-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 88888778899999999854433333 23345788999998888887774 3678888887543333333344567899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCCcE
Q 004327 655 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 726 (761)
Q Consensus 655 ~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~~~ 726 (761)
++++++..|+.+. .+.|..+|+........+. ........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999877777776 6689999886532211111 11122235566544 5665554 45888888877653
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.10 E-value=0.017 Score=63.28 Aligned_cols=248 Identities=9% Similarity=0.150 Sum_probs=156.4
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
+..|.|.|+.+...+....-. --+.-.+|..+.||.=. ..++.|||+++... ++.+.- ...|..=.|..+. .+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~-~e~VvfWkWis~~-~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEEEETT-EE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceec-CCCceEEEecCCC-eE
Confidence 347889998876544322111 12345678877777765 67999999998553 555543 3457667776553 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEecC-----CCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004327 580 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t-~~~~~~~~~~-----~~i~~l~fspd~~~Llags~-------dg~I~IwDl~t~~~i~~l~~ 646 (761)
.+++ +..|+-|++.. ..+++.|..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 120 ~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 3333 66899999974 4566666643 34677788999999876653 4678899988653 344667
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEECCCCC-----Cce-eEEEee---cCCCceEEEEEeCCCCEEEEE
Q 004327 647 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS-----KGE-CIHELS---CTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 647 h~~~I~sl~~spdg---~~Lasgs----Dg~I~IWdl~s~~-----~~~-~i~~l~---~~~~~I~sl~fspdg~~L~sg 710 (761)
|......+.+..+. .+++.+. .++++|.++.... ..+ .+..+. ...+-..++.+++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444432211 2444444 2689999996531 111 111111 123445788899999999999
Q ss_pred EcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 711 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
+..|.|++||+.++.++ .-.-....|...+.+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999988 333444555555555444444444456654
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.09 E-value=0.00063 Score=73.50 Aligned_cols=224 Identities=8% Similarity=0.065 Sum_probs=121.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeE--EEEec---cCCcceEEEEEcCC---CCEEEEEeC-C-----CeEE
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTVR 546 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~--~~~l~---~h~~~V~~v~fspd---g~~Lasgs~-D-----G~I~ 546 (761)
.-+.++|.|||++++ +..+|.|.+++ +++. +..+. ........|+|+|+ +..|+++.. + ..|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 467999999998555 45679999998 3432 22221 22356889999998 555555443 2 6788
Q ss_pred EEecCCCCc-----eeEEee---cCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC--------
Q 004327 547 VWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG-------- 597 (761)
Q Consensus 547 VWDl~t~~~-----~i~~~~---~h~~~V~sl~fsp~g~~llasgs~-------------Dg~I~vWDl~t~-------- 597 (761)
.|+...... .+..+. +.......++|.|+|. ++++.+. .|.|..++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888764321 111122 1112346899999984 4444321 145666665420
Q ss_pred ----eeeeEEe-cCCCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEcCC
Q 004327 598 ----SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQGH 647 (761)
Q Consensus 598 ----~~~~~~~-~~~~i~~l~fspd~~~Llags~d-g~--------I~IwDl~t----------------~~~i~~l~~h 647 (761)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+. +
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-Q 266 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-C
Confidence 1111222 12335678999955556655543 22 33332111 01222332 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 648 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~---~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 234567777 4565555444 667888777643210 1112222234678899999999644443
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.09 E-value=0.0042 Score=72.41 Aligned_cols=224 Identities=8% Similarity=-0.017 Sum_probs=150.3
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEec-cCCcceEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 004327 493 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 570 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fspdg~~Lasg-s~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl 570 (761)
+|+.+ ....|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|..++++.... ...+.........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 44444 45789999998765443332 223468899999866665544 5578999999876442 22333223457789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCC
Q 004327 571 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 647 (761)
Q Consensus 571 ~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~-~~~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~~h 647 (761)
++.+.++.++++-...+.|.+.++........+ ..-.....++++|..+.|+.+.. .+.|..+++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887788877777889999999754432222 23345789999998788887764 4688888887654333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCC
Q 004327 648 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 724 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~ 724 (761)
-.....|++++++..|+.+. .+.|..+|+..... ..+ .........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~---~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI---ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe---eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 45788999999888777776 67999999976432 222 22333455777765 45666665 568888887666
Q ss_pred c
Q 004327 725 K 725 (761)
Q Consensus 725 ~ 725 (761)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.08 E-value=0.0041 Score=72.40 Aligned_cols=276 Identities=8% Similarity=-0.019 Sum_probs=160.5
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCce
Q 004327 480 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 556 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasg-s~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~--DG~I~VWDl~t~~~~ 556 (761)
.....+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 468899999966555544 56789999998765433333344456789999997666666554 35677777764332
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILD 634 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~~~~i~~l~fspd~~~Llags~-dg~I~IwD 634 (761)
.......-.....|+++++++.++++-...+.|..+|+.......... .......+++..+ .++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222222335678999999877888777777889999997544333222 1123455666544 5555554 57888888
Q ss_pred CCCCeEEEEEcC-----------CC--------------C-------------CEEEEEE-----cCCC--------CEE
Q 004327 635 VETQVCRLKLQG-----------HK--------------N-------------QVHSVCW-----NTSG--------EYL 663 (761)
Q Consensus 635 l~t~~~i~~l~~-----------h~--------------~-------------~I~sl~~-----spdg--------~~L 663 (761)
..+++....+.. |. + ...|.|- .+|+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643222111 10 0 0111110 0111 244
Q ss_pred EEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCCcEEEE-ccCCCCeeEEEE
Q 004327 664 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAA 741 (761)
Q Consensus 664 asgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l-~~h~~~V~slaf 741 (761)
+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 44555667777776543211111111 1234678999997777887775 56899999877544333 233356788999
Q ss_pred eCCCCEEEEEE-CCCeEEE
Q 004327 742 STVNGMVASAS-HDKCVKI 759 (761)
Q Consensus 742 spdg~~LaSgs-~DG~I~I 759 (761)
...++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444443 4455554
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.06 E-value=0.0011 Score=70.79 Aligned_cols=232 Identities=10% Similarity=0.029 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec---cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 555 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~---~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~ 555 (761)
...+.+|.|.+ +..++ ++.++.|.. ..+.++.-..+. .+...+..|.+.+++..++++ .+|.|.. ..+.+..
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 34588899986 44444 455665544 333343333322 234567888887776655555 4564432 1222222
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004327 556 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 632 (761)
Q Consensus 556 ~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~v-WDl--~t~~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~I 632 (761)
-......+...+..+++.+++ .+++.+. +|.|+. +|- .+.+.+. ......+..+.+.+++. +++++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEEE
Confidence 122333455678999999875 4554554 454444 332 2222221 12335678888888865 556677888877
Q ss_pred EECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004327 633 LDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 708 (761)
Q Consensus 633 wDl~t~~~i~~l~~----h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~ 708 (761)
.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++....+.....+.........+.++.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 75333433222221 2235889999998888888878877 44555443322221111123567888887554 477
Q ss_pred EEEcCCcEEEEEC
Q 004327 709 VIGCYETLELWNM 721 (761)
Q Consensus 709 sgs~dg~I~IwDl 721 (761)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 8888888777653
No 299
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.04 E-value=0.0071 Score=71.85 Aligned_cols=264 Identities=11% Similarity=0.081 Sum_probs=155.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeE
Q 004327 479 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 558 (761)
Q Consensus 479 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~ 558 (761)
...|.++....+| .|.+|+.+ -+.+||..+.+...........|.++... ++ .|..++.+ -|..||..+.. +.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~--~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRK--LT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCC--EE
T ss_pred CceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCe--EE
Confidence 3468898888776 56666655 47899988765433111123357777543 44 56667766 57888887654 23
Q ss_pred Eee-----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEEEecCCCEEEEEEcC
Q 004327 559 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 559 ~~~-----~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~------~~~i~~l~fspd~~~Llags~d 627 (761)
.+. .....|.++....++..++ +.. +-|..||..++........ ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1234688888877764444 333 3588889877654322111 123777888877777777774
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 702 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l-----~~~~~~I~sl~fsp 702 (761)
+.|..||..+++...........|.+++...+|.+.+.. ++-+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 568899988775432211123458889888888877655 55688888765421 111100 11234688888888
Q ss_pred CCCEEEEEEcCCcEEEEECCCC-cEEEEc-----cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 703 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 703 dg~~L~sgs~dg~I~IwDl~~~-~~~~l~-----~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
++. |.+|+..| |.++..... +..... .....|.++....+|.+.+ |+.+|.++
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~ 347 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR 347 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence 876 66677666 555543221 111111 1234688888777776444 44556443
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.04 E-value=0.0029 Score=68.35 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=125.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCe-EEEEec---cCCcceEEEEEcCC---CCEEEEEeC----C----Ce
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT 544 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~-~~~~l~---~h~~~V~~v~fspd---g~~Lasgs~----D----G~ 544 (761)
..-..++|.|||+ |+++..+|.|++++. +++ .+..+. ........|+|+|+ +..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999997 445566799999973 444 222221 22356889999997 555555443 3 56
Q ss_pred EEEEecCCCC--c----e-eEEeec-CCCCeEEEEEcCCCCcEEEEEeC------------CCcEEEEECCCCe------
Q 004327 545 VRVWDTENPD--Y----S-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS------ 598 (761)
Q Consensus 545 I~VWDl~t~~--~----~-i~~~~~-h~~~V~sl~fsp~g~~llasgs~------------Dg~I~vWDl~t~~------ 598 (761)
|..|+..... . . +..+.. .......|+|.|++..++..++. .|.|..++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7778776541 1 1 111221 11234679999998544433321 2456666654210
Q ss_pred -eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEEcCCCCCEEEEEE
Q 004327 599 -CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSVCW 656 (761)
Q Consensus 599 -~~~~~~-~~~~i~~l~fspd~~~Llags~dg----~I~IwDl~t----------------~~~i~~l~~h~~~I~sl~~ 656 (761)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+.........++|
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 011121 223467899999555566655432 344433211 0122333112245778888
Q ss_pred c-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEE
Q 004327 657 N-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 657 s-------pdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-~~~~~I~sl~fspdg~~L~sgs 711 (761)
. .+|.++++.. .+.|...++...........+. .....+..+++.|||. |+++.
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~ 329 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILIST 329 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEE
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEE
Confidence 4 4666666555 6788888887532111122222 2345788999999996 44444
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.01 E-value=9.8e-06 Score=96.02 Aligned_cols=225 Identities=8% Similarity=-0.027 Sum_probs=135.8
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCC
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 575 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~---~~~i~~~~~h~~~V~sl~fsp~ 575 (761)
.+.|++.++.+......+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888877655444433 34567899998766666554 4578999998751 1111222111223566888866
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEE
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVH 652 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~~~~~~-~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~~~i~~l~~h~~~I~ 652 (761)
++.++++-...+.|.++++........+.. ......++++|.+++|+.+.. .+.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 667776666678999999886544433332 245678899998777776654 26888888764332222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCCcEEE
Q 004327 653 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLT 728 (761)
Q Consensus 653 sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~ 728 (761)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++.. .+.|..+|..+++.+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 899999876666555 66899999865321 222211111223344555443 4555544 4589999988877663
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.00 E-value=0.0015 Score=69.46 Aligned_cols=196 Identities=9% Similarity=0.093 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCeEEEE-ecc----CC--cceEEEEE---cCCCCEEEEEe----------
Q 004327 482 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS---------- 540 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs-~Dg~I~VWdl~t~~~~~~-l~~----h~--~~V~~v~f---spdg~~Lasgs---------- 540 (761)
-.|++|.+....|..++ ..++|..||...+..... +.+ .. ..+..|.| .+++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45789988555655555 789999999986544333 322 11 14689999 58877776543
Q ss_pred ---CCCeEEEEecC---CCCceeE-EeecC-----------CCCeEEEEEcCCCCcEEEEEeCC-CcEEEEECCCCeeee
Q 004327 541 ---ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAG 601 (761)
Q Consensus 541 ---~DG~I~VWDl~---t~~~~i~-~~~~h-----------~~~V~sl~fsp~g~~llasgs~D-g~I~vWDl~t~~~~~ 601 (761)
.+..|..||+. +++.... .+... ......++..++|+.++ +++.. +.|..++........
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCEEee
Confidence 26789999998 5554222 22111 12478999999986555 66666 777777776432222
Q ss_pred EEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEE-cCC---CCCEEEE-EEcCCCCEEEEEe-
Q 004327 602 VFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKL-QGH---KNQVHSV-CWNTSGEYLASVS- 667 (761)
Q Consensus 602 ~~~~~------~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~--i~~l-~~h---~~~I~sl-~~spdg~~Lasgs- 667 (761)
.+... ...+.|+++|++..|++....|.|..||+.+... +..- .+. -.....| ..-.+|+.|+++.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~ 253 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR 253 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence 22111 2367899999999999998899999999985433 2111 021 1223443 3334677755554
Q ss_pred -CCeEEEEECCC
Q 004327 668 -DELVRVWSIGS 678 (761)
Q Consensus 668 -Dg~I~IWdl~s 678 (761)
.+.+.+.+...
T Consensus 254 ~~~~~~l~S~Dg 265 (334)
T 2p9w_A 254 APYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEECSST
T ss_pred CCCEEEEECCCC
Confidence 55555555443
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.99 E-value=0.024 Score=70.59 Aligned_cols=272 Identities=9% Similarity=0.020 Sum_probs=152.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEecCCCC-ce
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YS 556 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~DG~I~VWDl~t~~-~~ 556 (761)
.+|.-..|...+..-+.+..+....+|... ++....--....--....|+.. ..-++..+ ++.++|..+++-. ..
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 455544454444443333335555555433 2332221111122234455442 23344443 5568888875432 22
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeC------------------------------------------------CCc
Q 004327 557 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 588 (761)
Q Consensus 557 i~~~~~h~~~V~sl~fsp~g~~llasgs~------------------------------------------------Dg~ 588 (761)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 33333 34567888888876555444321 124
Q ss_pred EEEEECCCCeeeeEEecCCC--eeEEEE---ecC-CCEEEEEE----------cCCeEEEEECCCCeEEEEE-cCCCCCE
Q 004327 589 IRYWSINNGSCAGVFKCQSG--ATQMRF---QPR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV 651 (761)
Q Consensus 589 I~vWDl~t~~~~~~~~~~~~--i~~l~f---spd-~~~Llags----------~dg~I~IwDl~t~~~i~~l-~~h~~~I 651 (761)
|+++|..+.+.+..+..... +.+++. ..+ ..+|++|+ ..|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 67778777777666654332 444443 222 46788777 2478999998755433222 1246789
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE--ECCCCcEEEE
Q 004327 652 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 729 (761)
Q Consensus 652 ~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l 729 (761)
++++-- +| +|+++-..+|++|++....... ...... ..|..+.....++++++|..-..|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 988754 34 6666778899999997653222 111111 123333444457789999988876665 5555555533
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 730 S--AHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 730 ~--~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
. .+..+++++.|-.+ ..++.+..+|.|.++
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 45677888888654 477779999999875
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.95 E-value=0.0023 Score=69.07 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-eeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeCC-----CcE
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 589 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-~i~~~---~~h~~~V~sl~fsp~---g~~llasgs~D-----g~I 589 (761)
.....++|.|+++++ ++..+|.|.+++ . +.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 456799999999854 456679999998 3 321 11111 112356889999998 55666555432 678
Q ss_pred EEEECCCCee-----e-eEEec----CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 004327 590 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 638 (761)
Q Consensus 590 ~vWDl~t~~~-----~-~~~~~----~~~i~~l~fspd~~~Llags~-------------dg~I~IwDl~t~-------- 638 (761)
..|+...+.. + ..+.. ......++|.|++..+++.+. .|.|..+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888775421 1 11221 112468999999865555432 256777766531
Q ss_pred ------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEECCCCCC---------------ceeEEEee
Q 004327 639 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 689 (761)
Q Consensus 639 ------~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I------~IWdl~s~~~---------------~~~i~~l~ 689 (761)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+.
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 11111 122 2356789999 666665544 2221 2333322210 11222221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEc-CCcEEEEECCCCc-------EEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 690 CTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 690 ~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~~~~-------~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
.......++| .++. ++++.. .+.|...+++... ...+......+.++++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2233456677 3554 444444 4477777765432 122223346789999999998776654
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.94 E-value=0.0017 Score=70.18 Aligned_cols=177 Identities=7% Similarity=0.041 Sum_probs=103.6
Q ss_pred CCCeEEEEecCCCCceeE--Eeec-----CCCCeEEEEEcC--CCC-cEEEEEeC--CCcEEEEECCCC--eeee--EEe
Q 004327 541 ADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLLCSCDN--NSEIRYWSINNG--SCAG--VFK 604 (761)
Q Consensus 541 ~DG~I~VWDl~t~~~~i~--~~~~-----h~~~V~sl~fsp--~g~-~llasgs~--Dg~I~vWDl~t~--~~~~--~~~ 604 (761)
.+|.|.++|+.+...... .+.+ .......|.+.+ ++. +++++-.. +..|.+|++... .... .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974322222 2222 234667788766 344 34444333 467778776543 2222 222
Q ss_pred c--CCCeeEEEEecCCCEEEEEE-----------------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 004327 605 C--QSGATQMRFQPRLGRILAAA-----------------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 665 (761)
Q Consensus 605 ~--~~~i~~l~fspd~~~Llags-----------------~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Las 665 (761)
. ....+.+.+.+++..+++.. ..|.|+.||...-+. +...-..-+.++|+||+++|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~---~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV---VAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE---EEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE---eecCCcccCcceECCCCCEEEE
Confidence 1 13468899999977655543 125677777642222 2222345689999999998887
Q ss_pred Ee--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCC-cEEEEEC
Q 004327 666 VS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYE-TLELWNM 721 (761)
Q Consensus 666 gs--Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fsp-dg~~L~sgs~dg-~I~IwDl 721 (761)
+. .+.|..|++...........+ ........+++++ +|++.+++..++ .|..||.
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 77 779999999743222223333 2346678889999 588666555443 4444443
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.91 E-value=0.01 Score=73.96 Aligned_cols=271 Identities=11% Similarity=0.080 Sum_probs=147.2
Q ss_pred CCCeEEEEEcCC------CCEEEEEEC-CCeEEEEEcCCCeEEEEecc-CCcceEEEEEc--CCCCEEEEEeCCCeEEEE
Q 004327 479 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 548 (761)
Q Consensus 479 ~~~V~~lafSpd------g~~Lasgs~-Dg~I~VWdl~t~~~~~~l~~-h~~~V~~v~fs--pdg~~Lasgs~DG~I~VW 548 (761)
.+.|.|+++.+. ++++|+|.+ |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 469999997 99999999998776644321 11233444332 234578999999988766
Q ss_pred ecC--CCCcee-E-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEecCCCe-eEEEEecC--CCE
Q 004327 549 DTE--NPDYSL-R-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGA-TQMRFQPR--LGR 620 (761)
Q Consensus 549 Dl~--t~~~~i-~-~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~-~~~~~~~i-~~l~fspd--~~~ 620 (761)
.++ ++...- + .+.| ..++.-..|...+..-+++++ +....+|.-+ ++... .+.. ..+ ....|+.. .+-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCc
Confidence 654 333211 1 2333 345554455444444444444 4444444433 22221 1111 223 23344332 133
Q ss_pred EEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----------------------------
Q 004327 621 ILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----------------------------- 668 (761)
Q Consensus 621 Llags~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~~spdg~~Lasgs-D----------------------------- 668 (761)
+++ ..++.++|..+.+. -.+.++. -...+..++++|+.+.++.+. +
T Consensus 709 ~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 709 LAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp EEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred EEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence 443 34556888776532 2333333 235677888888766544332 1
Q ss_pred --------------------CeEEEEECCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cC
Q 004327 669 --------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CY 713 (761)
Q Consensus 669 --------------------g~I~IWdl~s~~~~~~i~~l~~~~-~~I~sl~---fspd-g~~L~sgs----------~d 713 (761)
..|+++|..+. ..+..+.-.. ..+.+++ |..+ ..+|++|+ ..
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred ccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 12455554443 2333332222 2233443 3322 46788887 24
Q ss_pred CcEEEEECCCCcEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEcC
Q 004327 714 ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 761 (761)
Q Consensus 714 g~I~IwDl~~~~~~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~IWd 761 (761)
|.|++|++.+++.. .....++.|++++-- .| +|++|- ..+|+||+
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~ 910 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence 68999998765544 333557889998844 35 444443 46788875
No 307
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.91 E-value=0.031 Score=66.31 Aligned_cols=266 Identities=8% Similarity=0.040 Sum_probs=155.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-cc----CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 554 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-~~----h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~ 554 (761)
..|.++....+|.+.+ |+. +-|..|+..+.+..... .. ....|.++....++..|..|+. +-|..+|..+..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887655 444 45788888776543221 11 1234888888777776666664 458888887644
Q ss_pred ceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--------cCCCeeEEEEecCCCEEEEEE
Q 004327 555 YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 555 ~~i~~~~-~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~--------~~~~i~~l~fspd~~~Llags 625 (761)
. ..+. .....|.++....++...+ |.. +-|.+++..++....... ....|.++....++. |.+|+
T Consensus 223 ~--~~~~~l~~~~i~~i~~d~~g~lWi--gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT 296 (758)
T 3ott_A 223 I--KQTEAFHNNSIKSLALDGNGDLLA--GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT 296 (758)
T ss_dssp E--EEEEEEEEEEEEEEEECTTCCEEE--EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred E--EeccCCCCCeEEEEEEcCCCCEEE--EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence 2 2221 1234588888877764444 333 458889887655432221 112477777777654 56666
Q ss_pred cCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-------cCCC
Q 004327 626 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 693 (761)
Q Consensus 626 ~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~-------~~~~ 693 (761)
..| +.++............ .....|.+++.+.+|.+.+.. ++-+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5554432211111111 123468999988888877654 3456677665432111 11111 1234
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEEEc--c-----CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~--~-----h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++. |..|+..+-|.+|
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEE
Confidence 588888888887 55666 568999999887765332 1 224588888777665 4446654445444
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.90 E-value=0.0036 Score=67.57 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeC---C----C
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 587 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~---~~h~~~V~sl~fsp~---g~~llasgs~---D----g 587 (761)
-.....|+|.|+++ |+++..+|.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999987 5555667999999743 32122221 112346889999997 5566655442 3 5
Q ss_pred cEEEEECCCC--e---e--e-eEEec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 004327 588 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 638 (761)
Q Consensus 588 ~I~vWDl~t~--~---~--~-~~~~~--~~~i~~l~fspd~~~Llags~-------------dg~I~IwDl~t~------ 638 (761)
.|..|+.... . . + ..+.. ......+.|.|++..+++.+. .|.|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6788887654 1 1 1 11221 123467999999876665432 246776766532
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEECCCCCC---------------ceeEEEeecCCCce
Q 004327 639 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 695 (761)
Q Consensus 639 ---~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg--~I~IWdl~s~~~---------------~~~i~~l~~~~~~I 695 (761)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2343 346799999 677666544 22 344432 2210 11222331223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCcEEEEECCCC-cEE---EEc-cCCCCeeEEEEeCCCCEEEEEE
Q 004327 696 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 696 ~sl~fs-------pdg~~L~sgs~dg~I~IwDl~~~-~~~---~l~-~h~~~V~slafspdg~~LaSgs 752 (761)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+.++++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 777773 45654444444558888888753 332 232 2245799999999998766654
No 309
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.0021 Score=68.96 Aligned_cols=180 Identities=10% Similarity=0.159 Sum_probs=118.7
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEc
Q 004327 578 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQ 645 (761)
Q Consensus 578 ~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd----~~---~Llags~---dg~I~IwDl--~t~~~i~~l~ 645 (761)
.+++.....+.+.+||+ .++.+..+.. +.+..+.+-|+ +. .+++... ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 45556677889999999 6888887764 56777777663 12 2333333 478999977 3443 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEECCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004327 646 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 709 (761)
Q Consensus 646 ~------h~-~~I~sl~~--spd-g~-~Lasgs-Dg~I~IWdl~s~----~~~~~i~~l~~~~~~I~sl~fspdg~~L~s 709 (761)
. .. ..+..+|+ ++. +. |+++.. ++.+..|++... ...+.+.++.. ...+..|++.+...+|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 55677887 674 54 455555 889999998432 12245566654 467899999999999999
Q ss_pred EEcCCcEEEEECC-----CCcEEEEccC---CCCeeEEEEe--CCCC-EEEEEE-CCCeEEEcC
Q 004327 710 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 761 (761)
Q Consensus 710 gs~dg~I~IwDl~-----~~~~~~l~~h---~~~V~slafs--pdg~-~LaSgs-~DG~I~IWd 761 (761)
+-++..|..|+.+ +.+.+...+. ...+..|++- ++++ ||++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445533322 2468888884 4555 666666 567788875
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.90 E-value=0.037 Score=58.46 Aligned_cols=234 Identities=13% Similarity=0.173 Sum_probs=154.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 563 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h 563 (761)
+.-.+|..+.||.-. ...+.|||+++...++.+.-. ..|..=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 345688888887776 689999999999888887544 56777777654 3455544 4579999998777777777766
Q ss_pred C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeEE-EEecCC----CEEEEEE-c-
Q 004327 564 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILAAA-I- 626 (761)
Q Consensus 564 ~----~~V~sl~fsp~g~~llasgs------~Dg~I~vWDl~t~~~~~~~~~~~~i~~l-~fspd~----~~Llags-~- 626 (761)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+. +...+. .+-.++ ..+++-. .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE--GHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC--CSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee--eeeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777788888877776663 236788888875432 2222 221111 121121 1233322 2
Q ss_pred --CCeEEEEECCCC--------e-EEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004327 627 --ENYISILDVETQ--------V-CRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 627 --dg~I~IwDl~t~--------~-~i~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
.+.++|.++... + .+..+.. ..+.-.++..++...+++.-+ -|.|++||+.++ .++..-+..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccC
Confidence 268999998532 1 1111211 234456788888777777777 999999999998 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 692 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 692 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
...|...+.+....-+++....|.|.-..+++...+
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 777777676666556777778887777777665544
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.86 E-value=0.0047 Score=65.67 Aligned_cols=209 Identities=10% Similarity=0.047 Sum_probs=132.6
Q ss_pred eccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCceeEEeec----CC--CCeEEEEE---cCCCCcEEEEEe--
Q 004327 517 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD-- 584 (761)
Q Consensus 517 l~~h~~~V~~v~fspdg~~Lasgs-~DG~I~VWDl~t~~~~i~~~~~----h~--~~V~sl~f---sp~g~~llasgs-- 584 (761)
+......-.+++|.+....|+.++ ..++|..||...+......+.+ .. ..+..|.| .|+ +.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 334444556889988656666665 7999999999855432222222 11 13578999 577 45665443
Q ss_pred -----------CCCcEEEEECC---CCeeeeEEecC--------------CCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 004327 585 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 635 (761)
Q Consensus 585 -----------~Dg~I~vWDl~---t~~~~~~~~~~--------------~~i~~l~fspd~~~Llags~d-g~I~IwDl 635 (761)
.+..|..||+. +++.+...... .....++..++|+.+++.+.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 78877666532 247789999999999999998 99999988
Q ss_pred CCCeEEEEE-cC----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c---CCCceEE-EEEeCCC
Q 004327 636 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHS-CVFHPTF 704 (761)
Q Consensus 636 ~t~~~i~~l-~~----h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~-~---~~~~I~s-l~fspdg 704 (761)
.......-+ .. .....+.|+++|+|.+|++.. .+.|..+|+...... .+..-. + ....... +..-.+|
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 755332221 11 122367999999999888887 889999999843110 121110 1 1122333 3444577
Q ss_pred CEEEEEEc-CCcEEEEECCCCcEE
Q 004327 705 PSLLVIGC-YETLELWNMTENKTL 727 (761)
Q Consensus 705 ~~L~sgs~-dg~I~IwDl~~~~~~ 727 (761)
+.++++.. .+.+.+.+.+..+..
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEEcCCCCEEEEECCCCccee
Confidence 76555544 556666666555544
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.84 E-value=0.0027 Score=68.47 Aligned_cols=234 Identities=8% Similarity=0.057 Sum_probs=126.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-eeE----EeecCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 586 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-~i~----~~~~h~~~V~sl~fsp~---g~~llasgs~-------D 586 (761)
...+.|+|.|+++.|+++...|.|++++.+.... .+. .+.........|+|+|+ +..++++... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3568999999998455556789999998542110 011 11122345789999996 4556555432 2
Q ss_pred CcEEEEECCCC--e--eee-EEec-C------CCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC---
Q 004327 587 SEIRYWSINNG--S--CAG-VFKC-Q------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--- 638 (761)
Q Consensus 587 g~I~vWDl~t~--~--~~~-~~~~-~------~~i~~l~fspd~~~Llags~-------------dg~I~IwDl~t~--- 638 (761)
..|..|++... . ... .+.. . .....+.|.|++..+++.+. .|.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776543 1 111 1111 1 12457999999854444332 246777776532
Q ss_pred -----------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEECCCCCC-----------------------
Q 004327 639 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------- 681 (761)
Q Consensus 639 -----------~~i~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg~I~IWdl~s~~~----------------------- 681 (761)
..+.. .++ .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 123 3467899999 566555433 22223322222111
Q ss_pred -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCcEEEEECCCCcEE---EEc-cCCCCeeEEEEeCCC
Q 004327 682 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN 745 (761)
Q Consensus 682 -----~~~i~~l~~~~~~I~sl~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~---~l~-~h~~~V~slafspdg 745 (761)
...+..+. +......+.|.. ++.++++.-..+.|..+++..++.. .+. .....+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111222 123456677764 3554444445568888888766544 222 234579999999999
Q ss_pred CEEEEEE-CCCeEE
Q 004327 746 GMVASAS-HDKCVK 758 (761)
Q Consensus 746 ~~LaSgs-~DG~I~ 758 (761)
.++++.. .+|.|.
T Consensus 335 ~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 335 YLYVLTDESSGELL 348 (353)
T ss_dssp CEEEEECSTTEEEE
T ss_pred cEEEEEeCCCCEEE
Confidence 8666544 456543
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.78 E-value=6.8e-05 Score=88.81 Aligned_cols=213 Identities=8% Similarity=0.015 Sum_probs=127.8
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-cCCCeeEEEEec
Q 004327 542 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQP 616 (761)
Q Consensus 542 DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t----~~~~~~~~-~~~~i~~l~fsp 616 (761)
.+.|++.++..... ..+......+..|+|++.+..++++-...+.|+.+++.. ......+. .......+++.+
T Consensus 385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45788888876442 222223345778999988777777766778999999875 22222221 112356688886
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEECCCCCCceeEEEeecCC
Q 004327 617 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG 692 (761)
Q Consensus 617 d~~~Llags-~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IWdl~s~~~~~~i~~l~~~~ 692 (761)
.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...-
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~l 539 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTENI 539 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCCC
Confidence 666666554 467899999887654444433334567889998765555544 3 6788877754321 11 111223
Q ss_pred CceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 693 NKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.....++|++++..|+++... +.|.++|+.......+.. .......|++..+ .++++....+.|..+
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 445679999988777777654 489999997654443332 2234556666543 344444445666654
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.76 E-value=0.0051 Score=66.30 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=123.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEe-------ccCCcceEEEEEcCC---CCEEEEEe-C-------C
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 542 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l-------~~h~~~V~~v~fspd---g~~Lasgs-~-------D 542 (761)
.-+.|+|.|||++|+++...|.|++++.+ +.....+ .........|+|+|+ +.+|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36899999999834455678999999854 3322111 122345789999996 45555443 2 2
Q ss_pred CeEEEEecCCCCce---eE-Eeec------CCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCe-
Q 004327 543 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 598 (761)
Q Consensus 543 G~I~VWDl~t~~~~---i~-~~~~------h~~~V~sl~fsp~g~~llasgs~-------------Dg~I~vWDl~t~~- 598 (761)
..|..|++...... .. .+.. .......|+|.|++. |+++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666766543111 11 1111 112245799999984 4444332 2467777765320
Q ss_pred -----------eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 004327 599 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T----------------- 637 (761)
Q Consensus 599 -----------~~~~~~-~~~~i~~l~fspd~~~Llags~dg----~I~IwDl~--------t----------------- 637 (761)
....+. .......++|+|..+.|+++.... .|.+.... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 122222 223467899999656777765532 23222100 0
Q ss_pred ----CeEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 638 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 638 ----~~~i~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
..++..+. +...+..++|.. +|.++++.. .+.|...++..+........+......+..+++.|||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122232 223567788864 456666554 77888888875311111111223345789999999998
Q ss_pred EEEEEE
Q 004327 706 SLLVIG 711 (761)
Q Consensus 706 ~L~sgs 711 (761)
|++++
T Consensus 336 -lyv~t 340 (353)
T 2g8s_A 336 -LYVLT 340 (353)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 44443
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.76 E-value=0.065 Score=58.75 Aligned_cols=234 Identities=13% Similarity=0.181 Sum_probs=155.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004327 484 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 563 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h 563 (761)
+.-.+|..+.||.=. ..++.|||+++...++.+.-.+ .|..=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 455678777777765 6899999999998888876444 4656666544 3555553 5679999998766777777766
Q ss_pred C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeE-EEEecCC----CEEEE-EEc-
Q 004327 564 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILA-AAI- 626 (761)
Q Consensus 564 ~----~~V~sl~fsp~g~~llasgs------~Dg~I~vWDl~t~~~~~~~~~~~~i~~-l~fspd~----~~Lla-gs~- 626 (761)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+. +...+ ..+-.++ ..+++ +..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE--GHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC--CSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe--eeeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777788888877776663 246788888875432 2222 11111 1121121 12333 222
Q ss_pred --CCeEEEEECCCC--------eEEEE-EcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004327 627 --ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 691 (761)
Q Consensus 627 --dg~I~IwDl~t~--------~~i~~-l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~ 691 (761)
.+.++|.++... +.... +.. -.+.-.++..++...+++.-+ -|.|++||+.++ .++..-+..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 378999998542 11111 111 234456788888888887777 899999999998 788877777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 692 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 692 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
...|...+.+....-+++....|.|.-..+++...+
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 777777777776666888888888777777665544
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.76 E-value=0.018 Score=61.80 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=130.6
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce-eEEe----ecCCCCeEEEEEcCC---CCcEEEEE--eC
Q 004327 516 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 585 (761)
Q Consensus 516 ~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~-i~~~----~~h~~~V~sl~fsp~---g~~llasg--s~ 585 (761)
.+...-...+.|+|.|++.++++--..|.|++++..++... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34334456789999999987776655899999987654431 1111 123456889999995 34444432 24
Q ss_pred CCcEEEEECCCC-----e---eeeE---Eec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC-
Q 004327 586 NSEIRYWSINNG-----S---CAGV---FKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 638 (761)
Q Consensus 586 Dg~I~vWDl~t~-----~---~~~~---~~~--~~~i~~l~fspd~~~Llags~-------------dg~I~IwDl~t~- 638 (761)
++.|.-|.+..+ . .... +.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556777766542 1 1111 211 123456999999876666542 356666665532
Q ss_pred --------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCCCC---------------ceeEEEeecCCC
Q 004327 639 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 693 (761)
Q Consensus 639 --------~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~~~---------------~~~i~~l~~~~~ 693 (761)
..+. -.+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 1122 12443 346799999988776654 43223333322211 112223322223
Q ss_pred ceEEEEEeCCCCEEEEEEcC-CcEEEEECCCCcE----E-EEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 694 KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~d-g~I~IwDl~~~~~----~-~l~~h~~~V~slafspdg~~LaSgs 752 (761)
....++|.. +. ++.+... ..|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 455666663 43 5555444 4676666655432 1 2233456899999999998766654
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.70 E-value=0.003 Score=65.69 Aligned_cols=227 Identities=9% Similarity=0.065 Sum_probs=116.4
Q ss_pred CCCEEEEEE-CC-----CeEEEEEcCCCeEEE--EeccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCC--
Q 004327 490 DGKLLATGG-HD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 554 (761)
Q Consensus 490 dg~~Lasgs-~D-----g~I~VWdl~t~~~~~--~l~~h~~~V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~-- 554 (761)
++.+++.|+ .+ ..+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666665 32 468889987764322 12111111222222 56677777754 468999998765
Q ss_pred -ceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEE
Q 004327 555 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 625 (761)
Q Consensus 555 -~~i~-~~~~h~~~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags 625 (761)
.... .+.........+.+ + +.+++.|+.+ ..+.+||+.+.+....-..... ..+++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3221 11111111222222 2 4666676643 3688999988775554332222 122222 2555666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCC
Q 004327 626 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 692 (761)
Q Consensus 626 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~~~ 692 (761)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 53 4689999988753332 1111111122222 566666665 3 368999997752 12222222111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEE
Q 004327 693 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 727 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~ 727 (761)
.....+.+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 11222222 56666666655 36889999887654
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.62 E-value=0.034 Score=59.90 Aligned_cols=193 Identities=13% Similarity=0.119 Sum_probs=116.8
Q ss_pred CeEEEEEcCCCCEEEEE------------ECCCeEEEEEcCC--CeEE-EEecc-----CCcceEEEEEcC--CCC-EEE
Q 004327 481 KVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA 537 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasg------------s~Dg~I~VWdl~t--~~~~-~~l~~-----h~~~V~~v~fsp--dg~-~La 537 (761)
....+++.++|..++++ ..+|.|.++|.++ .+.. ..+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 35566778877554444 1689999999873 2221 12222 224567777755 454 455
Q ss_pred EEe-C--CCeEEEEecCCCCcee---EEeecC-CCCeEEEEEcCCCCcEEEEEe-----------------CCCcEEEEE
Q 004327 538 TSS-A--DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS 593 (761)
Q Consensus 538 sgs-~--DG~I~VWDl~t~~~~i---~~~~~h-~~~V~sl~fsp~g~~llasgs-----------------~Dg~I~vWD 593 (761)
++. . +.+|.+|+++...... ..+.+. -...+++.+.++|. ++++.. ..|.|+.||
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 543 2 4688898887543322 233322 24578999999864 444543 124555555
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-
Q 004327 594 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS- 667 (761)
Q Consensus 594 l~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t-~~--~i~~l~~h~~~I~sl~~sp-dg~~Lasgs- 667 (761)
. +++......-...+.++|+||++.++++.. .+.|..||+.. +. ....+ ......-.+++++ +|.+.+++.
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 5 343333344456789999999998888775 68999999863 32 22233 2345678899999 599888775
Q ss_pred CC-eEEEEECC
Q 004327 668 DE-LVRVWSIG 677 (761)
Q Consensus 668 Dg-~I~IWdl~ 677 (761)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 53 55555544
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.60 E-value=0.0089 Score=62.30 Aligned_cols=226 Identities=8% Similarity=0.028 Sum_probs=115.7
Q ss_pred CEEEEEEC--CCeEEEEEcCCCeEEE--EeccCCcceEEEEEcCCCCEEEEEeCC----CeEEEEecCCCCceeEE-eec
Q 004327 492 KLLATGGH--DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG 562 (761)
Q Consensus 492 ~~Lasgs~--Dg~I~VWdl~t~~~~~--~l~~h~~~V~~v~fspdg~~Lasgs~D----G~I~VWDl~t~~~~i~~-~~~ 562 (761)
.+++.|+. ...+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+....... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 3578889988754322 12111112222333 56677777754 57888998876532211 111
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc--------
Q 004327 563 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-------- 626 (761)
Q Consensus 563 h~~~V~sl~fsp~g~~llasgs~D------g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~-------- 626 (761)
.......+.+ ++.+++.|+.+ ..+.+||+.+.+....-....+ -.+++. .++..++.|+.
T Consensus 91 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111122222 34666677654 4689999988765544222221 122222 24455555553
Q ss_pred -CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004327 627 -ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC 698 (761)
Q Consensus 627 -dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl 698 (761)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 34588999988743322111 11111122222 566666655 2 368899987742 12221222111222233
Q ss_pred EEeCCCCEEEEEEcC-----CcEEEEECCCCcEE
Q 004327 699 VFHPTFPSLLVIGCY-----ETLELWNMTENKTL 727 (761)
Q Consensus 699 ~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~ 727 (761)
.+ ++..+++|+.+ ..+.+||..+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56666777644 47899999887655
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.58 E-value=0.039 Score=59.27 Aligned_cols=236 Identities=8% Similarity=0.057 Sum_probs=124.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE--EEe----ccCCcceEEEEEcCC---CCEEEEE-e--
Q 004327 473 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S-- 540 (761)
Q Consensus 473 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~--~~l----~~h~~~V~~v~fspd---g~~Lasg-s-- 540 (761)
..+-..-..-+.|+|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|++. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 333344445789999999987776655899999987655432 222 123456899999995 3445443 2
Q ss_pred CCCeEEEEecCCCC----------ceeEEee-cCCCCeEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCC
Q 004327 541 ADRTVRVWDTENPD----------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNG 597 (761)
Q Consensus 541 ~DG~I~VWDl~t~~----------~~i~~~~-~h~~~V~sl~fsp~g~~llasgs------------~Dg~I~vWDl~t~ 597 (761)
.+..|.-|.+.... ..+..+. ........|.|.|++..++.+|+ ..|.|.-++....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 34566666665411 1111121 11223467999999854444342 1355555555421
Q ss_pred e-------eeeEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCC------------------eEEEEEcCCCC
Q 004327 598 S-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQ------------------VCRLKLQGHKN 649 (761)
Q Consensus 598 ~-------~~~~~~-~~~~i~~l~fspd~~~Llags~--dg~I~IwDl~t~------------------~~i~~l~~h~~ 649 (761)
- ....+. .......++|+|++. |+++.. ++.-.|.-+..+ .++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 011222 223467899999754 555443 221222221111 11223332223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004327 650 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 650 ~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~-~~~i~~l~~~~~~I~sl~fspdg~~L~sg 710 (761)
....|+|. +|.+++..- ...|....+..... ......+......+..+++.|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 355555444 55666666654321 11222333345678889999988644443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.52 E-value=0.0058 Score=63.60 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=114.2
Q ss_pred CCEEEEEECC----CeEEEEEcCCCeEEEE--eccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCCceeEE
Q 004327 491 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 559 (761)
Q Consensus 491 g~~Lasgs~D----g~I~VWdl~t~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~D-----G~I~VWDl~t~~~~i~~ 559 (761)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+... ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW--TS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE--EE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCce--ee
Confidence 3455555543 4678888877643222 1111111122222 56677777654 3588899887553 22
Q ss_pred eecC--CCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC---
Q 004327 560 FTGH--STTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE--- 627 (761)
Q Consensus 560 ~~~h--~~~V~sl~fsp~g~~llasgs~Dg-----~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~d--- 627 (761)
+..- ...-.+++.. + +.+++.|+.++ .+.+||+.+.+....-..... ..+++. .++..++.|+.+
T Consensus 92 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVAS 168 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTT
T ss_pred CCCCCccccceEEEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCC
Confidence 2211 1111222222 2 45666666443 578899987765544322222 122222 244555555542
Q ss_pred ----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCce
Q 004327 628 ----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 628 ----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
..+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+.. ...+..+......
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~- 244 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRN- 244 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBS-
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcccc-
Confidence 4588999988743322 11111111 22222 566666665 3 368899987641 1222222111111
Q ss_pred EEEEEeCCCCEEEEEEcCC-----cEEEEECCCCcEEEE
Q 004327 696 HSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 729 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l 729 (761)
..++. -++..+++|+.++ .|.+||+.+.+...+
T Consensus 245 ~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 245 AGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 12222 2566666776553 589999988876544
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.38 E-value=0.0049 Score=64.12 Aligned_cols=212 Identities=9% Similarity=0.066 Sum_probs=105.5
Q ss_pred CCCEEEEEe-CC-----CeEEEEecCCCCceeEEeecCC--CCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCe
Q 004327 532 SLSRLATSS-AD-----RTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS 598 (761)
Q Consensus 532 dg~~Lasgs-~D-----G~I~VWDl~t~~~~i~~~~~h~--~~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~ 598 (761)
++.+++.|+ .+ ..+.+||+.+... ..+.... ..-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW--SFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE--EeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 3688888877543 2222111 111122222 24677677654 469999998766
Q ss_pred ---eeeEEecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEE
Q 004327 599 ---CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASV 666 (761)
Q Consensus 599 ---~~~~~~~~~~--i~~l~fspd~~~Llags~d-----g~I~IwDl~t~~~i~--~l~~h~~~I~sl~~spdg~~Lasg 666 (761)
....-..... -..++.. ++..++.|+.+ ..+.+||+.+.+-.. .+...... .+++. -++++++.|
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLG 166 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEEC
T ss_pred CCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEEC
Confidence 4333222111 1222222 44555666543 468999998764332 22211111 12222 256666666
Q ss_pred e-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEEEEccCC--
Q 004327 667 S-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-- 733 (761)
Q Consensus 667 s-D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~-- 733 (761)
+ + ..+.+||+.+.. ...+..+..... -.+++. -++..+++|+.+ ..|.+||+.+.+...+....
T Consensus 167 G~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGH-WTNVTPMATKRS-GAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTE-EEEECCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCcccceEEEEeCCCCc-EEeCCCCCcccc-cceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 5 3 368899987752 122211211111 122222 255666666654 47999999988766443211
Q ss_pred CCeeEEEEeCCCCEEEEEECC
Q 004327 734 KLVSSLAASTVNGMVASASHD 754 (761)
Q Consensus 734 ~~V~slafspdg~~LaSgs~D 754 (761)
..-.+++ .-++++++.|+.+
T Consensus 244 r~~~~~~-~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 244 RCYVGAT-VLRGRLYAIAGYD 263 (301)
T ss_dssp CBSCEEE-EETTEEEEECCBC
T ss_pred ccceeEE-EECCEEEEEcCcC
Confidence 1111222 2367777777765
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.38 E-value=0.046 Score=57.51 Aligned_cols=234 Identities=5% Similarity=-0.078 Sum_probs=134.5
Q ss_pred cCCCCEEEEEE--CCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCC--------------CeEEEEecC
Q 004327 488 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 551 (761)
Q Consensus 488 Spdg~~Lasgs--~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D--------------G~I~VWDl~ 551 (761)
+.++.+|+... .++.|...+.+... ...+... .+--|++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34667766664 25666666665433 3333221 133457788888877543 467777777
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-C
Q 004327 552 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 627 (761)
Q Consensus 552 t~~~~i~~~~~h~~~V~sl~fsp~g~~llasg---s~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags~-d 627 (761)
.... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..|+++++.|+..+. .
T Consensus 97 g~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCC
Confidence 6542 233321 1 235677777777665 3455677777774443333332 22 456788888887766 5
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004327 628 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 704 (761)
Q Consensus 628 g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs--Dg-~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg 704 (761)
..|++.++..+.....+.+ ... ..+.|++.+|+-.. ++ .|..-++..... ..+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECC
Confidence 7899999987765544432 222 34569999888776 32 566666665432 1121 2223 3488889
Q ss_pred CEEEEEEc--CCcEEEEECCCCcEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004327 705 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 705 ~~L~sgs~--dg~I~IwDl~~~~~~~l~~h~~~V~slafspdg~~LaSgs 752 (761)
.+|+.+.. .+.|...++.......+... .+.. +++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEE--EEECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccce--EEEeCCEEEEEE
Confidence 88887644 34777778876544433322 2333 344555555544
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.38 E-value=0.018 Score=64.88 Aligned_cols=258 Identities=12% Similarity=0.092 Sum_probs=148.4
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEeccC-------------------------CcceE--EEEEcC---CCCEEEEEeC-C
Q 004327 494 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFSP---SLSRLATSSA-D 542 (761)
Q Consensus 494 Lasgs~Dg~I~VWdl~t~~~~~~l~~h-------------------------~~~V~--~v~fsp---dg~~Lasgs~-D 542 (761)
|.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+.. ||+||+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678888999999999998888776310 11111 233322 5777877764 5
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEc--CCCCcEEEEEe------CCCcE------------EEEECCCCeeeeE
Q 004327 543 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 602 (761)
Q Consensus 543 G~I~VWDl~t~~~~i~~~~~h~~~V~sl~fs--p~g~~llasgs------~Dg~I------------~vWDl~t~~~~~~ 602 (761)
..|...+++.-++...........+..++|- |+.+++|+.+- +||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777788877554222223345668888886 66666665441 23221 1123333333333
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEcC-------
Q 004327 603 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 646 (761)
Q Consensus 603 ~~~~~~i~~l~fspd~~~Llags~dg---------------~I~IwDl~t-------~--~-----~i~~l~~------- 646 (761)
+...+....+...+++++.++.+.+. .+.+|++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 33344455566677788877776422 255665320 0 0 0111211
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEECCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 004327 647 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 707 (761)
Q Consensus 647 --------h~~~I~sl~~spdg~~Lasgs--Dg~I~IWdl~s~---------~~~~~i~~l~~~~~~I~sl~fspdg~~L 707 (761)
-......+.++|||+|+++++ +.++.|+|++.- ....++..-...+-.....+|+++|...
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence 112345688999999999988 889999999741 1112222222245556778999999433
Q ss_pred EEEEcCCcEEEEECCCC----------cEE-EEccCCCCeeEEEE------eCCCCEEEEEE
Q 004327 708 LVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 752 (761)
Q Consensus 708 ~sgs~dg~I~IwDl~~~----------~~~-~l~~h~~~V~slaf------spdg~~LaSgs 752 (761)
.+.--|..|.-|++... .++ .+.-|-.+- .+.- .+||++|++.+
T Consensus 393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 34446889999998653 233 444443322 2222 46888888876
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.37 E-value=0.02 Score=60.00 Aligned_cols=226 Identities=8% Similarity=-0.020 Sum_probs=113.9
Q ss_pred EEEEEECCCeEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeC-----C------CeEEEEecCCCCceeEEe
Q 004327 493 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~-----D------G~I~VWDl~t~~~~i~~~ 560 (761)
+++.|+ ..+.+||..+.+-.. .+..............++.+++.|+. . ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344454 578999998876432 22222222333333457788888873 1 1277888877543 222
Q ss_pred ecCCCCe--EEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc-C
Q 004327 561 TGHSTTV--MSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-E 627 (761)
Q Consensus 561 ~~h~~~V--~sl~fsp~g~~llasgs~D--------g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~-d 627 (761)
..-..+- .+++.. ++.+++.|+.+ ..+.+||+.+.+....-....+ -.+++. .++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 2111111 122222 34666666632 4689999988765433222221 122222 34456666665 2
Q ss_pred -----CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCce
Q 004327 628 -----NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKF 695 (761)
Q Consensus 628 -----g~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg-----~I~IWdl~s~~~~~~i~~l~~~~~~I 695 (761)
..+.+||+.+.+-...-... ...-.+++.. ++++++.|+ ++ .+.+||+.+.. ...+..+..... -
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERS-S 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCB-S
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccc-c
Confidence 46899999876432211111 1111122222 566666665 43 58889987641 122221111111 1
Q ss_pred EEEEEeCCCCEEEEEEcC--------------CcEEEEECCCCcEEEE
Q 004327 696 HSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 729 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l 729 (761)
.+++.. ++..+++|+.+ ..|.+||+.+.+-..+
T Consensus 237 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 LSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp CEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 222222 55666666653 2478899988765543
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.30 E-value=0.1 Score=58.24 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=62.8
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCce-eEEeec------CCCCeEEEEEcCC---CCcEEEEEeC-----
Q 004327 521 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 585 (761)
Q Consensus 521 ~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~-i~~~~~------h~~~V~sl~fsp~---g~~llasgs~----- 585 (761)
-...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345779999999987666544457888876544322 122211 2355779999995 5566555432
Q ss_pred -------CCcEEEEECCCC--ee---eeEE---ec--CCCeeEEEEecCCCEEEEEEc
Q 004327 586 -------NSEIRYWSINNG--SC---AGVF---KC--QSGATQMRFQPRLGRILAAAI 626 (761)
Q Consensus 586 -------Dg~I~vWDl~t~--~~---~~~~---~~--~~~i~~l~fspd~~~Llags~ 626 (761)
...|..|++... .. ...+ .. ......++|.|++..+++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 11 1112 11 133688999999887776553
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.27 E-value=0.014 Score=60.74 Aligned_cols=211 Identities=11% Similarity=0.037 Sum_probs=106.4
Q ss_pred CEEEEEeC--CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEecC
Q 004327 534 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 606 (761)
Q Consensus 534 ~~Lasgs~--DG~I~VWDl~t~~~~i~-~~~~h~~~V~sl~fsp~g~~llasgs~D----g~I~vWDl~t~~~~~~~~~~ 606 (761)
.+++.|+. ...+.+||..+...... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555554 35788899887553211 11111111222222 34677777654 67899999887665443322
Q ss_pred CC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEe-C--------
Q 004327 607 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-D-------- 668 (761)
Q Consensus 607 ~~--i~~l~fspd~~~Llags~d------g~I~IwDl~t~~~i~~l~~h~-~~I~sl~~spdg~~Lasgs-D-------- 668 (761)
.. -..++. -++..++.|+.+ ..+.+||..+.+-...-.... ..-.+++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 22 122222 255566666654 468999998875332211111 11112222 2556666554 2
Q ss_pred -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEEEEccCC---CCeeEE
Q 004327 669 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSL 739 (761)
Q Consensus 669 -g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~---~~V~sl 739 (761)
..+.+||+.+.. ...+..+... ..-.+++.. ++..+++|+.+ ..+.+||+.+.+...+.... ....++
T Consensus 168 ~~~~~~yd~~~~~-W~~~~~~p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATET-WTELCPMIEA-RKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSC-CBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCe-EEECCCccch-hhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 348899987752 1222111111 111222332 55556666543 36899999888765432211 112222
Q ss_pred EEeCCCCEEEEEECC
Q 004327 740 AASTVNGMVASASHD 754 (761)
Q Consensus 740 afspdg~~LaSgs~D 754 (761)
.+ ++.+++.|+.+
T Consensus 245 ~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQ 257 (306)
T ss_dssp EE--TTEEEEEECBC
T ss_pred EE--CCEEEEEeCcC
Confidence 22 67788888755
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.26 E-value=0.0096 Score=62.32 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=114.8
Q ss_pred CCCCEEEEEECC----CeEEEEEcCCCeEEEE--eccCCcceEEEEEcCCCCEEEEEeC----C-----CeEEEEecCCC
Q 004327 489 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 553 (761)
Q Consensus 489 pdg~~Lasgs~D----g~I~VWdl~t~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~----D-----G~I~VWDl~t~ 553 (761)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777632 4688899877653321 1111111122222 5666677665 2 35888898875
Q ss_pred CceeEEeec---CCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEE
Q 004327 554 DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILA 623 (761)
Q Consensus 554 ~~~i~~~~~---h~~~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~~~~~~~~~~~--i~~l~fspd~~~Lla 623 (761)
.. ..+.. .......+.+ + +.+++.|+.+ ..+.+||+.+.+....-..... -.+++.. ++..++.
T Consensus 101 ~W--~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~ 174 (308)
T 1zgk_A 101 QW--SPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV 174 (308)
T ss_dssp EE--EECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE
T ss_pred eE--eECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE
Confidence 43 22211 1111222222 2 4566666533 4688999987765443222211 1222222 4455666
Q ss_pred EEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeec
Q 004327 624 AAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSC 690 (761)
Q Consensus 624 gs~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~ 690 (761)
|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+..
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~ 251 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKH 251 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSS
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCC
Confidence 6553 4689999987643321 1111111222222 566666665 3 468999987641 111111211
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEEE
Q 004327 691 TGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 728 (761)
Q Consensus 691 ~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~ 728 (761)
.... .+++.. ++..+++|+.+ ..|.+||+.+.+...
T Consensus 252 ~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 252 RRSA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred Cccc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 1111 222222 55666666644 368899998876553
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.23 E-value=0.014 Score=60.56 Aligned_cols=211 Identities=9% Similarity=0.063 Sum_probs=105.1
Q ss_pred CEEEEEeCC----CeEEEEecCCCCceeEEeecCCC--CeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeE
Q 004327 534 SRLATSSAD----RTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGV 602 (761)
Q Consensus 534 ~~Lasgs~D----G~I~VWDl~t~~~~i~~~~~h~~--~V~sl~fsp~g~~llasgs~D-----g~I~vWDl~t~~~~~~ 602 (761)
.+++.|+.+ ..+.+||+.+... ..+..... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344445432 3577888876543 22211111 11122222 35677677644 3588999988765544
Q ss_pred EecCCC--eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C----
Q 004327 603 FKCQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D---- 668 (761)
Q Consensus 603 ~~~~~~--i~~l~fspd~~~Llags~dg-----~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs-D---- 668 (761)
-..... -.+++. .++..+++|+.++ .+.+||+.+.+-... +...... .+++. -++++++.|+ +
T Consensus 93 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTT
T ss_pred CCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCC
Confidence 332221 122222 2556666776543 588899987753332 1111111 12222 2556666554 2
Q ss_pred ---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEEEEccCCCC--eeE
Q 004327 669 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSS 738 (761)
Q Consensus 669 ---g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~--V~s 738 (761)
..+.+||+.+.. ...+..+...... .+++.. ++..+++|+.+ ..+.+||+.+++...+...... -.+
T Consensus 170 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNE-WTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp EECCCEEEEETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ccccEEEEEeCCCCc-EEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 258899987642 1222222211111 222222 56666666654 3799999988876644322111 112
Q ss_pred EEEeCCCCEEEEEECCC
Q 004327 739 LAASTVNGMVASASHDK 755 (761)
Q Consensus 739 lafspdg~~LaSgs~DG 755 (761)
++ ..++.+++.|+.++
T Consensus 247 ~~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 247 VC-AVNGLLYVVGGDDG 262 (302)
T ss_dssp EE-EETTEEEEECCBCS
T ss_pred EE-EECCEEEEECCcCC
Confidence 22 23677777777654
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.20 E-value=0.074 Score=55.90 Aligned_cols=177 Identities=8% Similarity=0.027 Sum_probs=108.8
Q ss_pred EEEEcCCCCEEEEEECC--------------CeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEe--C--CCeE
Q 004327 484 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV 545 (761)
Q Consensus 484 ~lafSpdg~~Lasgs~D--------------g~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs--~--DG~I 545 (761)
+--|+++|++|+.+... ..|+..+++..+... +.... +..|++++++|+... . +..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567888888777543 467777777665333 32211 236777888888776 3 3455
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 004327 546 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 625 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~~~Llags 625 (761)
...+++... ...+..+.. ..|+++++.++++......|.+.++..+.....+. +.. ...++|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence 556665433 344444432 34567777888776656789999998766554443 333 234679999988877
Q ss_pred cC--CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEECCCC
Q 004327 626 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 679 (761)
Q Consensus 626 ~d--g~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IWdl~s~ 679 (761)
.+ ..|..-++...... .+. ...+ ..|+|++.+|+.+. .+.|..-++...
T Consensus 203 ~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 54 36777787765432 232 2234 34778888888764 346666666543
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.09 E-value=0.01 Score=63.28 Aligned_cols=231 Identities=8% Similarity=-0.060 Sum_probs=113.5
Q ss_pred CCCEEEEEECC-CeEEEEEcCC----CeEEEEec-cCCcceEEEEEcCCCCEEEEEeC-C---------CeEEEEecCCC
Q 004327 490 DGKLLATGGHD-KKAVLWCTES----FTVKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 553 (761)
Q Consensus 490 dg~~Lasgs~D-g~I~VWdl~t----~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~-D---------G~I~VWDl~t~ 553 (761)
++++++.|+.+ ..+.+||+.+ ...+..+. .......++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666776643 5788888864 22222222 11111222333 5667777665 2 46888998875
Q ss_pred CceeEEeec-CCCCeEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 004327 554 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 593 (761)
Q Consensus 554 ~~~i~~~~~-h~~~V~sl~fsp~g~~llasgs~D---------------------------------------g~I~vWD 593 (761)
......... ....-.+++. .+ +.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 532211111 1111112222 23 4677777644 5799999
Q ss_pred CCCCeeeeEEecCC--Ce-eEEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEcCCCCCEEEEEEcCCC
Q 004327 594 INNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 660 (761)
Q Consensus 594 l~t~~~~~~~~~~~--~i-~~l~fspd~~~Llags~------dg~I~IwDl--~t~~~i~--~l~~h~~~I~sl~~spdg 660 (761)
+.+.+....-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-.. .+..........+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 98877655443322 12 233333 4455555553 346778887 4332211 111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 004327 661 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 714 (761)
Q Consensus 661 ~~Lasgs-D----------------------g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg--- 714 (761)
++++.|+ + ..+.+||+.+.. ...+..+........ ++.-+++.+++|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257889988642 233433332222222 2334677778888653
Q ss_pred ---cEEEEECCCCcEEE
Q 004327 715 ---TLELWNMTENKTLT 728 (761)
Q Consensus 715 ---~I~IwDl~~~~~~~ 728 (761)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 47777998888773
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.04 E-value=0.067 Score=55.97 Aligned_cols=219 Identities=8% Similarity=-0.002 Sum_probs=107.9
Q ss_pred eEEEEEcCCCeEEE-EeccCCcceEEEEEcCCCCEEEEEeC----CC-------eEEEEecCCCCceeEEeecCC--CCe
Q 004327 502 KAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTFTGHS--TTV 567 (761)
Q Consensus 502 ~I~VWdl~t~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~----DG-------~I~VWDl~t~~~~i~~~~~h~--~~V 567 (761)
.+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+... ..+.... ..-
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EECCCCCccccc
Confidence 47888888766433 22211122222333456778888873 12 277788876543 2222111 111
Q ss_pred EEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEc------CCeEEE
Q 004327 568 MSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAI------ENYISI 632 (761)
Q Consensus 568 ~sl~fsp~g~~llasgs~D-------g~I~vWDl~t~~~~~~~~~~~~i--~~l~fspd~~~Llags~------dg~I~I 632 (761)
.+++.. + +.+++.|+.+ ..+.+||+.+.+....-...... .+++. .++..++.|+. -..+.+
T Consensus 103 ~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence 222222 2 4566666643 35888999887655443222221 12222 35455566654 246999
Q ss_pred EECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 633 LDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 633 wDl~t~~~i~~l~~-h~~~I~sl~~spdg~~Lasgs-D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+.. ...+..+...... .+++. -++.
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~ 255 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-ISLVS-LAGS 255 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-CEEEE-ETTE
T ss_pred EcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-eEEEE-ECCE
Confidence 99988753322111 11111222322 556666665 2 257789987642 1222222211111 22222 2455
Q ss_pred EEEEEEcC--------------CcEEEEECCCCcEEEE
Q 004327 706 SLLVIGCY--------------ETLELWNMTENKTLTL 729 (761)
Q Consensus 706 ~L~sgs~d--------------g~I~IwDl~~~~~~~l 729 (761)
.+++|+.+ ..|.+||+.+.+-..+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 56666543 3688899988766543
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.015 Score=62.33 Aligned_cols=192 Identities=6% Similarity=-0.022 Sum_probs=104.3
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecC-CCCeEEEEE--cCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEecCCCe
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 609 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-~~~V~sl~f--sp~g~~llasg-s~Dg~I~vWDl~t~~~~~~~~~~~~i 609 (761)
.++++++.||.|+-+|..+++. +..+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999988775 3333322 122222110 01122444443 57999999999888665554432211
Q ss_pred e--EEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--CC-----EEEEEEc-----CCCCEEE
Q 004327 610 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 664 (761)
Q Consensus 610 ~--~l~fs-----------pd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~--~~-----I~sl~~s-----pdg~~La 664 (761)
. -+... ..++.+++++.+|.++.+|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 01111 145788999999999999999999999986431 11 1112111 1234555
Q ss_pred EEe-CCeEEEEECCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 004327 665 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 728 (761)
Q Consensus 665 sgs-Dg~I~IWdl~s~~~~~~-i~~l~~~~~~--I-~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 728 (761)
.+. +..+.+.+ +++..... +......... + ..-.++.++.+ ++++.||.|+.+|..++..+.
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66666666 33321111 1111110000 0 00001123554 557888888888888777664
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.97 E-value=0.07 Score=55.72 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=104.2
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCeeeeEE
Q 004327 535 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 603 (761)
Q Consensus 535 ~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~-----D------g~I~vWDl~t~~~~~~~ 603 (761)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||+.+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 579999998876543222221122222222333 456556652 1 13788999887654332
Q ss_pred ecCCCe--eEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe--C-
Q 004327 604 KCQSGA--TQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D- 668 (761)
Q Consensus 604 ~~~~~i--~~l~fspd~~~Llags~d--------g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs--D- 668 (761)
....+- .+++.. ++..++.|+.+ ..+.+||..+.+-... +...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 222211 122222 44555666532 4689999988743221 1111111 22222 3555666555 2
Q ss_pred ----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----cEEEEECCCCcEEEEccCC--CCee
Q 004327 669 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD--KLVS 737 (761)
Q Consensus 669 ----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~--~~V~ 737 (761)
..+.+||+.+.. ...+..+.... .-.+++.. ++..+++|+.++ .+.+||+.+.+...+.... ..-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTAR-SLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCC-BSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCch-hceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368999987641 11111111111 11222222 566677777654 5899999888766443211 1111
Q ss_pred EEEEeCCCCEEEEEECC
Q 004327 738 SLAASTVNGMVASASHD 754 (761)
Q Consensus 738 slafspdg~~LaSgs~D 754 (761)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.94 E-value=0.41 Score=53.19 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEE--EEecc------CCcceEEEEEcCC---CCEEEEEeC-------
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 541 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~--~~l~~------h~~~V~~v~fspd---g~~Lasgs~------- 541 (761)
...+.|+|.|||+++++-...+.|++++..++... ..+.. ....+..|+|+|+ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999987776544457988886555432 23321 2456789999995 555554432
Q ss_pred ------CCeEEEEecCCCCc-------eeEEee-cCCCCeEEEEEcCCCCcEEEEEe
Q 004327 542 ------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 542 ------DG~I~VWDl~t~~~-------~i~~~~-~h~~~V~sl~fsp~g~~llasgs 584 (761)
...|.-|++..... .+..+. ........|+|.|+|..++.+|+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23566666543211 111121 11234789999999865555553
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0065 Score=65.08 Aligned_cols=187 Identities=8% Similarity=-0.002 Sum_probs=103.2
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEeccC-CcceEEEEEc--CCCCEEEEE--eCCCeEEEEecCCCCceeEEeec---C
Q 004327 492 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG---H 563 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h-~~~V~~v~fs--pdg~~Lasg--s~DG~I~VWDl~t~~~~i~~~~~---h 563 (761)
.++++++.||.|.-+|.++|+....+... ..++....-. +.+..++.+ +.||.|..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37889999999999999999999998654 1222221110 112234433 57999999998876432211110 1
Q ss_pred CCCeEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCeeeeEEecCCCe--------eEEEEe-----cCCCEEEE
Q 004327 564 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA 623 (761)
Q Consensus 564 ~~~V~s---l~f-sp---~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~~~i--------~~l~fs-----pd~~~Lla 623 (761)
..++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+...... .|.... ..++.++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 112221 000 00 01346678999999999999999999988754321 111111 12356777
Q ss_pred EEcCCeEEEEECCCCeEEEEE-----cCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 004327 624 AAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 680 (761)
Q Consensus 624 gs~dg~I~IwDl~t~~~i~~l-----~~h~~~--I-~sl~~spdg~~LasgsDg~I~IWdl~s~~ 680 (761)
+..+..+.+.+ ++++ +..+ ...... + .+-..+.|+.++++..||.|..+|..++.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 77777777777 4443 2211 110000 0 00001124666555448888888877663
No 337
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.82 E-value=0.055 Score=59.25 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=89.0
Q ss_pred CCeEEEEECCCCeEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc---------eeEEEeec---
Q 004327 627 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC--- 690 (761)
Q Consensus 627 dg~I~IwDl~t~~~i~~l~~h----~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~---------~~i~~l~~--- 690 (761)
++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 366666666533222233221 23578899999999999999999999998743210 11222222
Q ss_pred ---CCCceEEEEEeCCC---CEEEEEEcCCcEEEEECCCCc--EEEE---------ccCCCCeeEEEEeCCCCEEEEEE-
Q 004327 691 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TLTL---------SAHDKLVSSLAASTVNGMVASAS- 752 (761)
Q Consensus 691 ---~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~~~~--~~~l---------~~h~~~V~slafspdg~~LaSgs- 752 (761)
...+|..+.|||-+ ..|++-..|+.|++||+.... +..+ ......|.+++|..++-.|+..+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 25679999999965 679999999999999997622 1111 22336789999999876666544
Q ss_pred -CCCeEE
Q 004327 753 -HDKCVK 758 (761)
Q Consensus 753 -~DG~I~ 758 (761)
.+|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 778775
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.81 E-value=0.052 Score=67.45 Aligned_cols=218 Identities=10% Similarity=0.175 Sum_probs=133.0
Q ss_pred CCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 004327 500 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 579 (761)
Q Consensus 500 Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~l 579 (761)
...|.|.|+.++..+..-. -.--+...+|..+.||.=. ..++.|||+++... ++.+.- ...|..=.|.... .+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~-~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 119 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCC-ee
Confidence 3478899988765442211 1112344677777666654 67899999997543 444432 3457667776553 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004327 580 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 646 (761)
Q Consensus 580 lasgs~Dg~I~vWDl~t-~~~~~~~~~-----~~~i~~l~fspd~~~Llags~-------dg~I~IwDl~t~~~i~~l~~ 646 (761)
.+++ +..|+.|++.. ..+++.|.. ...|..-..+++.++++..+- .|.+.+|..+.+. ...+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 3333 56899999974 344444432 244677778888898876653 4788888887543 233455
Q ss_pred CCCCEEEEEEc---CCCCEEEEEe----CCeEEEEECCCC---CC--c-eeEEEee---cCCCceEEEEEeCCCCEEEEE
Q 004327 647 HKNQVHSVCWN---TSGEYLASVS----DELVRVWSIGSG---SK--G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 647 h~~~I~sl~~s---pdg~~Lasgs----Dg~I~IWdl~s~---~~--~-~~i~~l~---~~~~~I~sl~fspdg~~L~sg 710 (761)
|......+... +...+++.+. .+.+.|.++... .. . +.+..+. ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 65544333332 1122333333 268999998653 10 0 1111111 112334577888888999999
Q ss_pred EcCCcEEEEECCCCcEE
Q 004327 711 GCYETLELWNMTENKTL 727 (761)
Q Consensus 711 s~dg~I~IwDl~~~~~~ 727 (761)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999877
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.76 E-value=0.035 Score=55.45 Aligned_cols=173 Identities=14% Similarity=0.017 Sum_probs=98.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCe------eeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 004327 577 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 642 (761)
Q Consensus 577 ~~llasgs~Dg~I~vWDl~t~~------~~~~~~~--~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~------i~ 642 (761)
+.+|++..+| +|+.=....+. ....+-. -..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 4556666666 66665554433 1122222 24678999999766 4444 888888888755211 11
Q ss_pred EEc--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeE----EEeecCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 643 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 643 ~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i----~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
.+- +... ..++.|+|+|.+.++ +||.|+-++-.+......+ ..-...-..+..+.|.|+|. |+++. |+.+
T Consensus 81 ~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQF 156 (236)
T ss_dssp EEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEE
T ss_pred Eeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcE
Confidence 110 1111 478999999998888 8899988876432211111 11111224689999999998 44445 8876
Q ss_pred EEEECCCCcEE------EEc--cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 717 ELWNMTENKTL------TLS--AHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 717 ~IwDl~~~~~~------~l~--~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
+-+....+... +.. ..-.....+.|.+++.+.++. +|.+.
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 54433322211 111 222344557788888766655 77553
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.71 E-value=0.1 Score=54.55 Aligned_cols=203 Identities=12% Similarity=0.056 Sum_probs=99.3
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCeeeeEEecCCC--ee
Q 004327 544 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--AT 610 (761)
Q Consensus 544 ~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~----Dg-------~I~vWDl~t~~~~~~~~~~~~--i~ 610 (761)
.+.+||..+......................+ +.+++.|+. ++ .+.+||..+.+....-..... ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47889988776533222211111222222333 456666662 11 277889887765443222221 12
Q ss_pred EEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEEcCCCCCE--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 004327 611 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 674 (761)
Q Consensus 611 ~l~fspd~~~Llags~d-------g~I~IwDl~t~~~i~~l~~h~~~I--~sl~~spdg~~Lasgs--D-----g~I~IW 674 (761)
+++.. ++..+++|+.+ ..+.+||+.+.+-...- ....+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 45666667654 35889999876533221 111111 12222 3566666654 2 258999
Q ss_pred ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----cEEEEECCCCcEEEEccCCC--CeeEEEEeCCCCE
Q 004327 675 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVSSLAASTVNGM 747 (761)
Q Consensus 675 dl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~--~V~slafspdg~~ 747 (761)
|+.+.. ...+..+.... ...+++.. ++..+++|+.++ .+.+||+.+.+...+..... .-.+++ ..++++
T Consensus 181 d~~~~~-W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGD-WKDLAPMKTPR-SMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTE-EEEECCCSSCC-BSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCE-EEECCCCCCCc-ccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 987742 12221121111 11223332 556666666543 68899998887664332111 111222 235677
Q ss_pred EEEEECC
Q 004327 748 VASASHD 754 (761)
Q Consensus 748 LaSgs~D 754 (761)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777754
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.54 E-value=0.043 Score=57.29 Aligned_cols=213 Identities=6% Similarity=-0.037 Sum_probs=105.0
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCCceeEEeecCC--CCeEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCC
Q 004327 532 SLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINN 596 (761)
Q Consensus 532 dg~~Lasgs~D----G~I~VWDl~t~~~~i~~~~~h~--~~V~sl~fsp~g~~llasgs~----D-----g~I~vWDl~t 596 (761)
++.+++.|+.+ ..+.+||..+... ..+.... ..-.+++.. ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 44555665532 3578888876543 2221111 111122222 2466666664 2 4688999987
Q ss_pred CeeeeEEecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 597 GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 597 ~~~~~~~~~~~~--i~~l~fspd~~~Llags~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
.+....-..... -.+++.. ++..+++|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 765443222111 1222222 44555665543 4688999987653322 1111111122222 566666665
Q ss_pred -C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CcEEEEECCCCcEEEEccCCC--
Q 004327 668 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-- 734 (761)
Q Consensus 668 -D-----g~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~-- 734 (761)
+ ..+.+||+.+.. ...+..+..... ..+++.. ++..+++|+.+ ..+.+||+.+.+...+.....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNE-WRMITAMNTIRS-GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEECCCCSSCCB-SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCe-EeeCCCCCCccc-cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 3 368899987641 111111111111 1222332 56666666654 469999998887664432111
Q ss_pred CeeEEEEeCCCCEEEEEECCC
Q 004327 735 LVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 735 ~V~slafspdg~~LaSgs~DG 755 (761)
.-.+++. -++++++.|+.++
T Consensus 254 ~~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 254 SALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp BSCEEEE-ETTEEEEECCBCS
T ss_pred cceEEEE-ECCEEEEEcCcCC
Confidence 1112222 2567777777543
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.52 E-value=1 Score=48.38 Aligned_cols=254 Identities=7% Similarity=-0.026 Sum_probs=120.3
Q ss_pred CCeEEEEEcC--CCCEEEEEECCC----eEEEEEcCCCeEEEEecc--------------CCcceEEEEEcC-C-CCEEE
Q 004327 480 SKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRLA 537 (761)
Q Consensus 480 ~~V~~lafSp--dg~~Lasgs~Dg----~I~VWdl~t~~~~~~l~~--------------h~~~V~~v~fsp-d-g~~La 537 (761)
..|.+|++.| ++.++| ++..| .|... .+.++.-..+.. +...|.+|++.| + ...|+
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4699999998 454444 44444 34333 222322222211 112578899987 2 45666
Q ss_pred EEeCCCeEEEEecCCCCceeEEeec-------------------CCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC
Q 004327 538 TSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG 597 (761)
Q Consensus 538 sgs~DG~I~VWDl~t~~~~i~~~~~-------------------h~~~V~sl~fsp~g-~~llasgs~Dg~I~vWDl~t~ 597 (761)
++...+.|...+ .+......+.. ....|.+|.++|.. ..+++... ++.|...+- .+
T Consensus 133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~D-gG 208 (394)
T 3b7f_A 133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTD-AG 208 (394)
T ss_dssp EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESS-TT
T ss_pred EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECC-CC
Confidence 666566554443 22222222211 12357889998843 34444333 344443322 22
Q ss_pred eeeeEEec--------------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC--CC---CCEEEEEEc
Q 004327 598 SCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCWN 657 (761)
Q Consensus 598 ~~~~~~~~--------------~~~i~~l~fspd-~~~Llags~dg~I~IwDl~t~~~i~~l~~--h~---~~I~sl~~s 657 (761)
+.-..+.. ...+.++.++|. .+.++++.. +.|+..+-. ++....+.. .. ..+.+++++
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~ 286 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVH 286 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEEC
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEEC
Confidence 22221110 123778889886 366666654 445555432 222222221 11 346778887
Q ss_pred CC--CCEEEEEe-----------CCeEEEEECCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCcEE
Q 004327 658 TS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETLE 717 (761)
Q Consensus 658 pd--g~~Lasgs-----------Dg~I~IWdl~s~-~~~~~i~~-l~~~~~----~I~sl~fspdg-~~L~sgs~dg~I~ 717 (761)
|. +.+++... ++...||...++ .....+.. +..... ....++++|.. ..|++++.++.|+
T Consensus 287 p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 287 QRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 63 34444331 223455655442 22222221 111010 11357788753 4577776666665
Q ss_pred EEECCCCcE-EEEccCCCCeeEEEEe
Q 004327 718 LWNMTENKT-LTLSAHDKLVSSLAAS 742 (761)
Q Consensus 718 IwDl~~~~~-~~l~~h~~~V~slafs 742 (761)
.-+ +.++. ..+..+-..|.+++|.
T Consensus 367 ~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 367 ASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEC-CCCCCceEcccCCCCeeEEEEe
Confidence 443 23332 2333444567777764
No 343
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.46 E-value=0.16 Score=55.52 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=92.7
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecC-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------
Q 004327 573 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 639 (761)
Q Consensus 573 sp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~~-----~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~-------- 639 (761)
+.++..+++.- ++.||.-++......+.+..+ ..+..+..+|+|.+|+..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34445555443 578888888755555555544 2578899999988777664 5688888876221
Q ss_pred ----EEEEEcC------CCCCEEEEEEcCCC---CEEEEEe-CCeEEEEECCCCCCceeE--------EEeecCCCceEE
Q 004327 640 ----CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS 697 (761)
Q Consensus 640 ----~i~~l~~------h~~~I~sl~~spdg---~~Lasgs-Dg~I~IWdl~s~~~~~~i--------~~l~~~~~~I~s 697 (761)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... ... ..+......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence 1222221 24679999999954 3555555 99999999986322 111 111223367889
Q ss_pred EEEeCCCCEEEEEE--cCCcEEEE
Q 004327 698 CVFHPTFPSLLVIG--CYETLELW 719 (761)
Q Consensus 698 l~fspdg~~L~sgs--~dg~I~Iw 719 (761)
++|..++-.|++.+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999988888866 67777643
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.41 E-value=1.6 Score=48.56 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=113.8
Q ss_pred eEEEEEcCCCC-EEEEEECCCeEEEEEcCCC---eEEEEec---------cCCcceEEEEEcCC----CCEEEEEeC--C
Q 004327 482 VESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA--D 542 (761)
Q Consensus 482 V~~lafSpdg~-~Lasgs~Dg~I~VWdl~t~---~~~~~l~---------~h~~~V~~v~fspd----g~~Lasgs~--D 542 (761)
-+.|+|.|||. .|+++...|.|++++.+.. ..+..+. ........|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 67899999996 4555678899999975432 1222221 11356889999996 333333221 1
Q ss_pred ----------CeEEEEecCCC---------CceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCC---------------
Q 004327 543 ----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN--------------- 586 (761)
Q Consensus 543 ----------G~I~VWDl~t~---------~~~i~~~~--~h~~~V~sl~fsp~g~~llasgs~D--------------- 586 (761)
..|.-|.+... ...+..+. ........|+|.||+..++.+|+..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~ 175 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDF 175 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCC
Confidence 13444665421 11122221 1223467899999986555555421
Q ss_pred -CcEEEEECCCC------e-------------eeeEEe-cCCCeeEEEEecCC-----C-EEEEEEcCC----eEEEEEC
Q 004327 587 -SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILDV 635 (761)
Q Consensus 587 -g~I~vWDl~t~------~-------------~~~~~~-~~~~i~~l~fspd~-----~-~Llags~dg----~I~IwDl 635 (761)
|.|.-.|.+.. . ...++. .......++|+|.. . +++++...| .-.|..+
T Consensus 176 ~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i 255 (463)
T 2wg3_C 176 TGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQI 255 (463)
T ss_dssp TTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEE
T ss_pred CeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeee
Confidence 23333444321 0 001111 12335678999973 3 444433212 1233333
Q ss_pred CCC------eEEEEEcCCC-CCEEEEEEcCC-------CCEEEEEeCCeEEEEECCCCCCceeEEEe-e--------cCC
Q 004327 636 ETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CTG 692 (761)
Q Consensus 636 ~t~------~~i~~l~~h~-~~I~sl~~spd-------g~~LasgsDg~I~IWdl~s~~~~~~i~~l-~--------~~~ 692 (761)
..+ .++..+..|. ..+..+.|... +.+|+..-.+.|....+...........+ . ...
T Consensus 256 ~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 335 (463)
T 2wg3_C 256 IKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFS 335 (463)
T ss_dssp C----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCC
T ss_pred ccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccccccc
Confidence 222 2344443221 46777887542 34555433666665555433211111112 1 123
Q ss_pred CceEEEEEeCCCCEEEEEE
Q 004327 693 NKFHSCVFHPTFPSLLVIG 711 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs 711 (761)
..+..+.+.|||..+++..
T Consensus 336 ~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 336 GHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SEEEEEEECTTCCEEEEEE
T ss_pred CcceEEEECCCCCEEEEec
Confidence 5789999999998666655
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.40 E-value=0.09 Score=65.43 Aligned_cols=235 Identities=11% Similarity=0.167 Sum_probs=139.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecC-
Q 004327 485 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 563 (761)
Q Consensus 485 lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h- 563 (761)
.-.+|..+.||.=. ..++.|||+++...+..+.-. ..|..=.|-.+. .|+..+ +..|+-|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34567777776654 689999999988777766543 456666776443 444443 4579999998655666666655
Q ss_pred ---CCCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEecCCC-eeEEEE--ecCCCEEEEEEc----C
Q 004327 564 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI----E 627 (761)
Q Consensus 564 ---~~~V~sl~fsp~g~~llasgs------~Dg~I~vWDl~t~~~~~~~~~~~~-i~~l~f--spd~~~Llags~----d 627 (761)
...|..-..+++.+.++++|- -.|.+.+|..+.+.. ..+..+.. ...+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888877776663 347788888764332 11111110 111111 111122333222 3
Q ss_pred CeEEEEECCCC---e------EEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 628 NYISILDVETQ---V------CRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 628 g~I~IwDl~t~---~------~i~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
+.++|.++... . .+..+.. ..+...++..++...+++..+ -|.|.+||+.++ .++..-+.....
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68889888542 1 1111111 123344666777666666666 899999999998 566655555556
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
|...+.+....-+++....|.|.-..++....+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 655555544444666667777766666665555
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.32 E-value=0.14 Score=51.18 Aligned_cols=177 Identities=10% Similarity=-0.074 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCeEEEEecCCCC---c--eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----
Q 004327 532 SLSRLATSSADRTVRVWDTENPD---Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----- 600 (761)
Q Consensus 532 dg~~Lasgs~DG~I~VWDl~t~~---~--~i~~~~~-h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~----- 600 (761)
....|++...| +|++=...... . ....+-. .=..+.+++|+|++. +.++ .+|.++-.+..+....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34566667777 65554443332 1 1122221 124678999999764 4444 5777777776542211
Q ss_pred -eEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 004327 601 -GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL 670 (761)
Q Consensus 601 -~~~~--~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~-------i~~l~~h~~~I~sl~~spdg~~LasgsDg~ 670 (761)
..+- .-.....+.|.|++...++ .||.|+-++..+... ...-..-=..+..|.|.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 1111 0111478899999776666 669998887643110 11111111467999999999999888 888
Q ss_pred EEEEECCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCcEE
Q 004327 671 VRVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 717 (761)
Q Consensus 671 I~IWdl~s~~~~~---~i~~l~-~~~~~I~sl~fspdg~~L~sgs~dg~I~ 717 (761)
++-+...+..... ....+- ..-.....+.|.+++...++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 6543332211000 011111 222344556788888744444 66443
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.31 E-value=1.5 Score=47.03 Aligned_cols=257 Identities=9% Similarity=-0.020 Sum_probs=122.0
Q ss_pred CEEEEEECCCeEEEEEcCC----CeEEEEeccCCcceEEEEEcC-CCCEEEEEeCCC----eEEEEecCCCCceeEEeec
Q 004327 492 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFTG 562 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG----~I~VWDl~t~~~~i~~~~~ 562 (761)
..|++|+..| +.+++... ....... .....|.+|++.| +...|++++..| .|... ..+......+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3677777766 55554432 2222111 2245699999998 334455554444 34333 222222222211
Q ss_pred --------------CCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--------------------cC
Q 004327 563 --------------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 606 (761)
Q Consensus 563 --------------h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t~~~~~~~~--------------------~~ 606 (761)
....|.++++.|. ...++ .+...+.|...+-. ++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCC
Confidence 1124778899873 34444 44445555544322 22211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeE
Q 004327 607 SGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELV 671 (761)
Q Consensus 607 ~~i~~l~fspd-~~~Llags~dg~I~IwDl~t~~~i~~l~~-----h--------~~~I~sl~~spd-g~~LasgsDg~I 671 (761)
..+.++.++|. .+.++++..++.|+..+-. ++....+.. + ...+.+|+++|+ ...|+++.++.|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGI 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeE
Confidence 23678888873 4566777666655554322 211111110 0 124889999986 356666665555
Q ss_pred EEEECCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCcEEEEECCC-CcEE-EEc-c
Q 004327 672 RVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-A 731 (761)
Q Consensus 672 ~IWdl~s~~~~~~i~~l~~--~~---~~I~sl~fspd-g~~L~sgs~-----------dg~I~IwDl~~-~~~~-~l~-~ 731 (761)
...+-. + .....+.. .. ..+.+++++|. ...|+++.. ++...||...+ ++.. .+. +
T Consensus 256 ~~s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g 331 (394)
T 3b7f_A 256 YRMDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG 331 (394)
T ss_dssp EEEETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT
T ss_pred EEeCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC
Confidence 555422 2 12222211 11 33567788763 344666542 23344554433 2322 211 1
Q ss_pred CCC-------CeeEEEEeCCC-CEEEEEECCCeEEE
Q 004327 732 HDK-------LVSSLAASTVN-GMVASASHDKCVKI 759 (761)
Q Consensus 732 h~~-------~V~slafspdg-~~LaSgs~DG~I~I 759 (761)
-.. ...+++++|.. ..|+.++.++.|.+
T Consensus 332 lp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 332 LPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 110 12467888753 44666666665543
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.23 E-value=0.054 Score=57.59 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=101.0
Q ss_pred CCCEEEEEeCC-CeEEEEecCCCCceeEEeecCC---CCeEEEEEcCCCCcEEEEEeC-C---------CcEEEEECCCC
Q 004327 532 SLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN-N---------SEIRYWSINNG 597 (761)
Q Consensus 532 dg~~Lasgs~D-G~I~VWDl~t~~~~i~~~~~h~---~~V~sl~fsp~g~~llasgs~-D---------g~I~vWDl~t~ 597 (761)
++.+++.|+.+ ..+.+||+.+.......+..-. ..-.+++.. + +.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T-TEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C-CEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 45555555543 4688888864222223322211 111222222 2 456666664 2 46899999887
Q ss_pred eeeeEEecC-CC-eeEEEEecCCCEEEEEEcC---------------------------------------CeEEEEECC
Q 004327 598 SCAGVFKCQ-SG-ATQMRFQPRLGRILAAAIE---------------------------------------NYISILDVE 636 (761)
Q Consensus 598 ~~~~~~~~~-~~-i~~l~fspd~~~Llags~d---------------------------------------g~I~IwDl~ 636 (761)
+....-... .. ....+...++..++.|+.+ ..+.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 654433222 11 1122222455666667643 579999998
Q ss_pred CCeEE--EEEcCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEEC--CCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004327 637 TQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSI--GSGSKGECIHELSCTGNKFHSCVFHPTFP 705 (761)
Q Consensus 637 t~~~i--~~l~~h~~~I~sl~~spdg~~Lasgs-D------g~I~IWdl--~s~~~~~~i~~l~~~~~~I~sl~fspdg~ 705 (761)
+.+-. ..+......-.+++.. ++++++.|+ + ..+.+||+ .+. ....+..+..........+...++.
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccceEEEECCE
Confidence 76433 2222111111233333 455555554 2 25777877 322 1111111111111112122333555
Q ss_pred EEEEEEcC----------------------CcEEEEECCCCcEEEEccCC-CCeeEEEEeCCCCEEEEEECCC
Q 004327 706 SLLVIGCY----------------------ETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDK 755 (761)
Q Consensus 706 ~L~sgs~d----------------------g~I~IwDl~~~~~~~l~~h~-~~V~slafspdg~~LaSgs~DG 755 (761)
.+++|+.+ ..+.+||+.+.+...+.... ......++..++++++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 56666532 25789999876644322111 1111122334678888888653
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.17 E-value=0.12 Score=60.78 Aligned_cols=197 Identities=5% Similarity=-0.010 Sum_probs=105.1
Q ss_pred CCCCEEEEEeCC----CeEEEEecCCCCceeEEee------cCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEEC
Q 004327 531 PSLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSI 594 (761)
Q Consensus 531 pdg~~Lasgs~D----G~I~VWDl~t~~~~i~~~~------~h~~~V~sl~fsp~g~~llasgs~D------g~I~vWDl 594 (761)
.++.+++.|+.+ ..+.+||..+.......+. .....-.+++..+.++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 355666666643 3588888887654322201 1111122333333124566676643 35889999
Q ss_pred CCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCC-CCEEE
Q 004327 595 NNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 664 (761)
Q Consensus 595 ~t~~~~~~~~~~~~--i~~l~fspd~~~Llags~dg--~I~IwDl~t~~~i~~l~-----~h~~~I~sl~~spd-g~~La 664 (761)
.+.+....-....+ -.+++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 88665443222211 23334434677778877654 79999998875332211 11112233555555 56666
Q ss_pred EEe---C-----CeEEEEECCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CcEEEEECCC
Q 004327 665 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTE 723 (761)
Q Consensus 665 sgs---D-----g~I~IWdl~s~~~-----~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~d--------g~I~IwDl~~ 723 (761)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 665 2 3589999987641 12222211112222333444446666777642 4699999988
Q ss_pred CcEE
Q 004327 724 NKTL 727 (761)
Q Consensus 724 ~~~~ 727 (761)
.+..
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 8765
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.09 E-value=0.58 Score=52.77 Aligned_cols=234 Identities=12% Similarity=0.107 Sum_probs=139.5
Q ss_pred CCCEEEEEE-CCCeEEEEEcCCCeEEEEec-cCCcceEEEEEc--CCCCEEEEEeC-------CCeE---------EE--
Q 004327 490 DGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSA-------DRTV---------RV-- 547 (761)
Q Consensus 490 dg~~Lasgs-~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~v~fs--pdg~~Lasgs~-------DG~I---------~V-- 547 (761)
||+||+.-. .+..|-..+++..++...+. .....+..++|- |+..|+++++. ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 788888876 46788889999988876664 344678899986 68888888875 3321 11
Q ss_pred -EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------C--
Q 004327 548 -WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------S-- 587 (761)
Q Consensus 548 -WDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~D-------------------------------------g-- 587 (761)
.|.++.+....... .+..-.+...+++...+.+|.+. +
T Consensus 221 ~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 11111111111111 11222344455666666555321 1
Q ss_pred cEEEEECCC----C-eeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC------e-------EEEEEcCCC
Q 004327 588 EIRYWSINN----G-SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ------V-------CRLKLQGHK 648 (761)
Q Consensus 588 ~I~vWDl~t----~-~~~~~~~~~~~i~~l~fspd~~~Llags~-dg~I~IwDl~t~------~-------~i~~l~~h~ 648 (761)
.|.+.|.+. + ..++.+........+.++|||.++++++. +.++.|+|+++. + .+.... -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 244555543 1 23344455556678999999999998887 789999998741 1 122232 23
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEECCCC------CC-ceeEEEeecCCCceEEEE-----EeCCCCEEEEEEc---
Q 004327 649 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG------SK-GECIHELSCTGNKFHSCV-----FHPTFPSLLVIGC--- 712 (761)
Q Consensus 649 ~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~------~~-~~~i~~l~~~~~~I~sl~-----fspdg~~L~sgs~--- 712 (761)
-.....+|+++|..+.+.. |..|..|++... .. ...+..+..|..+-+-.+ -.++|++|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~sk 457 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSK 457 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCT
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccccc
Confidence 3456789999995444444 999999998642 11 245555665554433322 2578888888764
Q ss_pred CC----------cEEEEECCCCcE
Q 004327 713 YE----------TLELWNMTENKT 726 (761)
Q Consensus 713 dg----------~I~IwDl~~~~~ 726 (761)
|. .-.++|+...+.
T Consensus 458 drfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 458 DRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp TSSCCCSSSCCEEEEEEECSSSSC
T ss_pred ccCcCCCCCCCCcceeEecCCCce
Confidence 22 346777765543
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.73 E-value=3.4 Score=45.92 Aligned_cols=229 Identities=13% Similarity=0.070 Sum_probs=117.5
Q ss_pred cceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC--ceeEEee---------cCCCCeEEEEEcCC---CCcEEEEEeC-
Q 004327 522 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 585 (761)
Q Consensus 522 ~~V~~v~fspdg~-~Lasgs~DG~I~VWDl~t~~--~~i~~~~---------~h~~~V~sl~fsp~---g~~llasgs~- 585 (761)
...+.|+|.|++. .|+++...|.|++++.+... ..+..+. ........|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567999999986 56667789999999754321 1122111 11356789999996 2344433321
Q ss_pred -C----------CcEEEEECCCC----------eeeeEEec---CCCeeEEEEecCCCEEEEEEcCC-------------
Q 004327 586 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 628 (761)
Q Consensus 586 -D----------g~I~vWDl~t~----------~~~~~~~~---~~~i~~l~fspd~~~Llags~dg------------- 628 (761)
+ ..|.-|.+..+ +.+..+.. ......|.|.||+..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 22222221 22357899999987777665432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEcCCCCCEEEEEEcCC-----CCE-EEEEeC-C----eEE
Q 004327 629 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 672 (761)
Q Consensus 629 ----~I~IwDl~t~---------------------~~i~~l~~h~~~I~sl~~spd-----g~~-LasgsD-g----~I~ 672 (761)
.|.-+|.+.. ..+.. .+|.. ...++|+|. |.+ ++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 12332 346899996 443 443321 2 133
Q ss_pred EEECCCCCC---ceeEEEeecCC-CceEEEEEeCCC------CEEEEEEcCCcEEEEECCCCcE----EEEc--------
Q 004327 673 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTF------PSLLVIGCYETLELWNMTENKT----LTLS-------- 730 (761)
Q Consensus 673 IWdl~s~~~---~~~i~~l~~~~-~~I~sl~fspdg------~~L~sgs~dg~I~IwDl~~~~~----~~l~-------- 730 (761)
|..+..+.. ...+..+..+. ..+..+.|-... ..++++...+.|....++.... ..+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433211 12333443221 456667664332 1256666667776666654321 1221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEE
Q 004327 731 -AHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 731 -~h~~~V~slafspdg~~LaSgs 752 (761)
.....+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999777765
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=95.50 E-value=2 Score=45.48 Aligned_cols=262 Identities=8% Similarity=0.013 Sum_probs=139.3
Q ss_pred CEEEEEECCCeEEEEEcCCCe-------EEEEec-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEe---cCCCC-----c
Q 004327 492 KLLATGGHDKKAVLWCTESFT-------VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----Y 555 (761)
Q Consensus 492 ~~Lasgs~Dg~I~VWdl~t~~-------~~~~l~-~h~~~V~~v~fspdg~~Lasgs~DG~I~VWD---l~t~~-----~ 555 (761)
..+++.+.+|.|+--.+.+.+ -+..+. ...+.+..+........|+.-+..|.++... +.... .
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 467788888888876543211 111111 1234455555555566677777788766544 33221 1
Q ss_pred eeE---EeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecCCCEEEE
Q 004327 556 SLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 556 ~i~---~~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t~-------~~~~~~~~~~~i~~l~fspd~~~Lla 623 (761)
++. .+. ....|.++...++ ...+++..+.+|.|+...+... .....++....+..+........++.
T Consensus 84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 111 111 2345665544432 2456668888999999887542 22223333455666666666688999
Q ss_pred EEcCCeEEEEECC--C---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCCC----ceeEE-
Q 004327 624 AAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIH- 686 (761)
Q Consensus 624 gs~dg~I~IwDl~--t---------~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~~----~~~i~- 686 (761)
.+..|.+..|... . |.....+. ....|.++...+++.+|+..+ .|.++...+..-.. ..-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999999888776 2 11212222 345677776666666777777 88888887643211 01122
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-------EEc--cCCCCeeEEEEeCC-CCEEEEEECCC
Q 004327 687 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 755 (761)
Q Consensus 687 -~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------~l~--~h~~~V~slafspd-g~~LaSgs~DG 755 (761)
.+....+.+..+....+...++..+.+|.+.-++...-... ... .....|.++...+. ...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222345555555555667888899988777776432221 111 23455666665543 34566566555
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.37 E-value=1.3 Score=52.00 Aligned_cols=236 Identities=9% Similarity=0.007 Sum_probs=122.6
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEEcCCCeEEE-Eec-cCCc------ceEEEEEcCCCCEEEEEe-----------C
Q 004327 486 HFSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS-----------A 541 (761)
Q Consensus 486 afSpdg~~Lasgs~-----Dg~I~VWdl~t~~~~~-~l~-~h~~------~V~~v~fspdg~~Lasgs-----------~ 541 (761)
+++||+++++.+-+ -..|+++|+++++.+. .|. .-+. ....++|. |.+-++.+. .
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCC
Confidence 37899998766522 2479999999988763 122 0000 11344776 434444432 1
Q ss_pred CCeEEEEecCCCCc-eeEEeecCCCCe-EEEEEcCCCCc----EEEEEe---CCCcEEEEECCC--CeeeeEEecCCCee
Q 004327 542 DRTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCD---NNSEIRYWSINN--GSCAGVFKCQSGAT 610 (761)
Q Consensus 542 DG~I~VWDl~t~~~-~i~~~~~h~~~V-~sl~fsp~g~~----llasgs---~Dg~I~vWDl~t--~~~~~~~~~~~~i~ 610 (761)
...|+.|.+-+... ....+.+....+ .....++++.. ++++.+ ....+++.|... ++... +..+...
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK-INMPSDA- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE-CCSCTTC-
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE-eecCCcc-
Confidence 24688998876532 233444433333 33445566553 455543 224567777653 33222 2222222
Q ss_pred EEEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-EcC-CCCCEEEEEEcCCCCEEEEEe-CC-
Q 004327 611 QMRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQG-HKNQVHSVCWNTSGEYLASVS-DE- 669 (761)
Q Consensus 611 ~l~fspd~~~Llag----------s~dg~I~IwDl~t~~-------~i~~-l~~-h~~~I~sl~~spdg~~Lasgs-Dg- 669 (761)
.+..+.++..++.. ...+.|.++|+.+.. .... +.. ....+..+.|..+ .++++.. ++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 22334444333322 135679999987631 1122 322 3346778888876 4455444 66
Q ss_pred -eEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CcEEEEECCCCcEE
Q 004327 670 -LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 727 (761)
Q Consensus 670 -~I~IWdl~s~~-~~~~i~~l~~~~~~I~sl~fspdg~~L~sg-s~d---g~I~IwDl~~~~~~ 727 (761)
.|+++++.++. ....+..+.. ...+....+++++..+++. ++. ..++.+|+. ++..
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57778775542 1111111221 2456666666777555444 332 378888887 5433
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.17 E-value=0.0027 Score=75.38 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=2.0
Q ss_pred cCCCCeeEEEEeC
Q 004327 731 AHDKLVSSLAAST 743 (761)
Q Consensus 731 ~h~~~V~slafsp 743 (761)
.|-.-+..+.|.+
T Consensus 707 DH~pV~a~f~l~~ 719 (727)
T 4b8c_D 707 DHIPLLARFEFMK 719 (727)
T ss_dssp SBCC---------
T ss_pred CceeEEEEEEEec
Confidence 4544555555544
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.01 E-value=0.64 Score=48.07 Aligned_cols=217 Identities=11% Similarity=0.006 Sum_probs=113.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 601 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~ 601 (761)
..|..|+.... ..+.-. ||.|+.|-...... +-........|..++.... +.++. . ||.|+.|-......+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 222235 89999997654322 1111112335777776533 34434 4 8999999876422111
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 004327 602 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 680 (761)
Q Consensus 602 -~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~ 680 (761)
.......|..++... .+.++.. +|.|+.|-....-.+-.-......|..++...+..+++ . |+.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence 111224566666554 4555566 99999997654211100011234577776544433332 2 8999999876432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004327 681 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 759 (761)
Q Consensus 681 ~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~I 759 (761)
... ........|..++.-.. +.++. .++.|+.|-....-.+ ........|..|+..... .++.. ||.|+.
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 00111234665555433 33444 6899999976543222 111222457777765443 33333 888888
Q ss_pred c
Q 004327 760 W 760 (761)
Q Consensus 760 W 760 (761)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 8
No 356
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.98 E-value=0.0065 Score=72.09 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.5
Q ss_pred CCeEEEEEc
Q 004327 500 DKKAVLWCT 508 (761)
Q Consensus 500 Dg~I~VWdl 508 (761)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 445555543
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.84 E-value=0.79 Score=53.80 Aligned_cols=151 Identities=11% Similarity=0.133 Sum_probs=83.9
Q ss_pred CCCEEEEEECC------CeEEEEEcCCCeEE--EEeccCCcceEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCceeEE
Q 004327 490 DGKLLATGGHD------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 559 (761)
Q Consensus 490 dg~~Lasgs~D------g~I~VWdl~t~~~~--~~l~~h~~~V~~v~fspdg~~Lasgs~DG--~I~VWDl~t~~~~i~~ 559 (761)
++++++.|+.+ ..+.+||..+.+-. ..+..... -.+++...++.+++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 35788898874322 22221111 12233334778888887654 6899999876542221
Q ss_pred e----ecCCCCeEEEEEcCCCCcEEEEEeC--C-----CcEEEEECCCCe------eeeEEec--CCC-eeEEEEecCCC
Q 004327 560 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRFQPRLG 619 (761)
Q Consensus 560 ~----~~h~~~V~sl~fsp~g~~llasgs~--D-----g~I~vWDl~t~~------~~~~~~~--~~~-i~~l~fspd~~ 619 (761)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. ....... ... -.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222335555553567767764 2 468999998877 2222221 111 12333333356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 004327 620 RILAAAI--------ENYISILDVETQVCR 641 (761)
Q Consensus 620 ~Llags~--------dg~I~IwDl~t~~~i 641 (761)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6667764 346999999987543
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.83 E-value=0.54 Score=48.64 Aligned_cols=243 Identities=13% Similarity=0.029 Sum_probs=124.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCceeEEe
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 560 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~~i~~~ 560 (761)
.|..|+.... ..++. . ||.|+.|-......+-.-......|..|+...+.. ++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 4666666543 23333 4 88999996543211111111223577777654432 333 4 89999998664322 1111
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004327 561 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 639 (761)
Q Consensus 561 ~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~-~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~~ 639 (761)
..-...|..++.-.. +.+ .-. ||.|+.|-......+ ........+..++.-. .+.++.. ||.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111346777776643 333 334 899999987642221 1111224455555443 3344444 7999998765321
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 640 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 640 ~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.+..-..-...|..|+...+.. ++. .|+.|+.|-........ .-......|..++.... +.++.. |+.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence 1100001134677777654443 334 69999999865432111 00011234555554433 334444 9999999
Q ss_pred ECCCCcEEEEccCCCCeeEEEEeCCCCEE
Q 004327 720 NMTENKTLTLSAHDKLVSSLAASTVNGMV 748 (761)
Q Consensus 720 Dl~~~~~~~l~~h~~~V~slafspdg~~L 748 (761)
-......+.+ ...|..|+......+.
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h~~a 268 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNAAYA 268 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSCEEE
T ss_pred cCCCCccccC---CCCcEEEEECcCeEEE
Confidence 7655433322 3467777766544333
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.48 E-value=6.5 Score=42.40 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=97.1
Q ss_pred cEEEEECCCC--eeeeEEecCC-------CeeEEEEe---cC----CCEEEEEEc-CCeEEEEECCCCeEEEEEcC----
Q 004327 588 EIRYWSINNG--SCAGVFKCQS-------GATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 646 (761)
Q Consensus 588 ~I~vWDl~t~--~~~~~~~~~~-------~i~~l~fs---pd----~~~Llags~-dg~I~IwDl~t~~~i~~l~~---- 646 (761)
.|.+||+.+. +.++.+..+. ....+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 8888777532 35677777 22 345555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEECC-----CCCCceeEEEeecCC--CceEEEEEe
Q 004327 647 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 701 (761)
Q Consensus 647 h--------------~~~I~sl~~spd----g~~LasgsDg~I~IWdl~-----s~~~~~~i~~l~~~~--~~I~sl~fs 701 (761)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-... ..-..++++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 136788999998 778877762222334332 222112222222222 334456776
Q ss_pred -CCCCEEEEEEcCCcEEEEECCC-C----cEEEE--ccCCCCeeEEEEeCCCCEEEEEE
Q 004327 702 -PTFPSLLVIGCYETLELWNMTE-N----KTLTL--SAHDKLVSSLAASTVNGMVASAS 752 (761)
Q Consensus 702 -pdg~~L~sgs~dg~I~IwDl~~-~----~~~~l--~~h~~~V~slafspdg~~LaSgs 752 (761)
.+|..+++--....|..|+..+ . ....+ ...-..+..+.+..++.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5665455555566899999876 1 11222 12223578888877777555543
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=94.35 E-value=6.1 Score=41.59 Aligned_cols=232 Identities=7% Similarity=0.037 Sum_probs=128.1
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCe----EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC---CCC-----ce
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS 556 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~----~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~---t~~-----~~ 556 (761)
|+..++++.+.+|.|+--.+...+ ....++.. +.+..+........|+..+..|.++-+... ... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788899999999887654221 11123333 344455454456677777888877665542 211 11
Q ss_pred eE---EeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCC--------CeeeeEEecCCCeeEEEEecCCCEEEE
Q 004327 557 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA 623 (761)
Q Consensus 557 i~---~~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t--------~~~~~~~~~~~~i~~l~fspd~~~Lla 623 (761)
+. .+. ....|.++...++ ....++.++.+|.++...+.. +.....+.....+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2234665543332 133455778899999988742 222222333345555555556678999
Q ss_pred EEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEECCCC---CC-ceeEEE-
Q 004327 624 AAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSG---SK-GECIHE- 687 (761)
Q Consensus 624 gs~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IWdl~s~---~~-~~~i~~- 687 (761)
.+.+|.+..|+... |.....+. ....|.++...+++. .|++.+ .|..+..++..- .. ..-+..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 99999998887642 12222232 234566665544444 555555 888887777431 10 111122
Q ss_pred --eecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 688 --LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 688 --l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+......+..+....+...+++.+..|.+..+++..
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 222233555444444455688888888776666644
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=94.13 E-value=7.5 Score=41.75 Aligned_cols=232 Identities=11% Similarity=0.048 Sum_probs=131.5
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCC---------CeEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC---CCC
Q 004327 487 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD 554 (761)
Q Consensus 487 fSpdg~~Lasgs~Dg~I~VWdl~t---------~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~---t~~ 554 (761)
+-++..++++.+.+|.|+--.+.. +.....++. .+.+..+........|+..+..|.++-+... ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 456778999999999999875432 222334443 4556666666666778888888877665532 211
Q ss_pred -----ceeE---EeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecC
Q 004327 555 -----YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 617 (761)
Q Consensus 555 -----~~i~---~~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t-------~~~~~~~~~~~~i~~l~fspd 617 (761)
..+. .+. ....|.++....+ ....++.++..|.++...+.. +.....+.....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 1111 122 2345665544321 234566788899999988643 222222333445555555556
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcC------------------------------
Q 004327 618 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 658 (761)
Q Consensus 618 ~~~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~sp------------------------------ 658 (761)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999988887542 22222222 234555554443
Q ss_pred -----CCCEEEEEe-CCeEEEEECCCCC----CceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 659 -----SGEYLASVS-DELVRVWSIGSGS----KGECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 659 -----dg~~Lasgs-Dg~I~IWdl~s~~----~~~~i~--~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
++.+|++.+ .|..+...+..-. ...-+. .+....+.+..+.+..+...++..+..|.+.-..+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 345677777 8888888764311 011112 22223345555555555566777888886665554
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.73 E-value=7.7 Score=40.52 Aligned_cols=231 Identities=9% Similarity=0.059 Sum_probs=126.5
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCeEE---------EEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC---CCc
Q 004327 488 SPDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDY 555 (761)
Q Consensus 488 Spdg~~Lasgs~Dg~I~VWdl~t~~~~---------~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t---~~~ 555 (761)
-++..++++.+.+|.|+-..+...+.. ..++.. +.+..+........++..+..|.++-+.... ...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678899999999998876543221 122333 3455555555566788888899877766532 100
Q ss_pred -----e---eEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecCC
Q 004327 556 -----S---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 618 (761)
Q Consensus 556 -----~---i~~~~~h~~~V~sl~fsp~--g~~llasgs~Dg~I~vWDl~t-------~~~~~~~~~~~~i~~l~fspd~ 618 (761)
. ...+. ....|.++...++ ....++..+..|.++...+.. |.....+.....+..+......
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 0 00122 2234555544331 233445677899999888743 2222223334456666665556
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC---C-cee
Q 004327 619 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---K-GEC 684 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~---~-~~~ 684 (761)
..++..+.+|.+..+.... |.....+. ....|.++....++..|++.+ .|.++.+++..-. . ..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999999987653 22223333 245666666655566566666 8888888874310 0 111
Q ss_pred EEEee---cCCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 685 IHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 685 i~~l~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
+..+. .....+..+....+...++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 11222 22234444333344555777777775443443
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=93.36 E-value=10 Score=40.70 Aligned_cols=230 Identities=10% Similarity=0.109 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEecCCCC---------c-eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004327 524 ITDVRFSPSLSRLATSSADRTVRVWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 592 (761)
Q Consensus 524 V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~---------~-~i~~~~~-h~~~V~sl~fsp~g~~llasgs~Dg~I~vW 592 (761)
|..|+. .....+.-..||.|+.|-..... . ....+.. ....+..+++..-..+ .+.-..||.|+.|
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h-~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKH-CLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSE-EEEEETTSCEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCe-EEEEcCCCCEEEE
Confidence 444543 23456666789999999644211 0 0111111 1223444555544333 3455669999999
Q ss_pred ECCCCe---------e--eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------C-e-EEEEEcC-CCC
Q 004327 593 SINNGS---------C--AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------Q-V-CRLKLQG-HKN 649 (761)
Q Consensus 593 Dl~t~~---------~--~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t---------~-~-~i~~l~~-h~~ 649 (761)
-..... . ...+.......-+.+.-...+.++...+|.|+.|-... . . ....+.. ...
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence 654211 0 11111111122233333446777888899999996432 0 1 1111211 234
Q ss_pred CEEEEEEcCCCCE-EEEEeCCeEEEEECCCCC------Cce--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 004327 650 QVHSVCWNTSGEY-LASVSDELVRVWSIGSGS------KGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELW 719 (761)
Q Consensus 650 ~I~sl~~spdg~~-LasgsDg~I~IWdl~s~~------~~~--~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 719 (761)
.|..++......+ ++...|+.|+.|-..... ... ....+.. ....|..++.- ..+.++...++.|+.|
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~w 289 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTW 289 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEE
Confidence 5777776543333 444449999999754310 001 1111111 12235554443 3456677889999999
Q ss_pred ECCCC---------c---EEEEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 720 NMTEN---------K---TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 720 Dl~~~---------~---~~~l~~-h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
-.... . +..+.. ....|..|+.. ....+....||.|+.|
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 65321 1 112221 12346666654 3344555788888887
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=93.17 E-value=11 Score=40.51 Aligned_cols=226 Identities=7% Similarity=0.008 Sum_probs=119.7
Q ss_pred EcCCCCEEEEEeCCCeEEEEecCC------C--CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE---CCC-
Q 004327 529 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 596 (761)
Q Consensus 529 fspdg~~Lasgs~DG~I~VWDl~t------~--~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWD---l~t- 596 (761)
+-++..++++.+.+|.|+--.+.. + ......++ ....+..+........+++ .+..|.++.+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~-fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLT-FTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEE-EETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEE-EeCCCeEEEEEHHHCcCC
Confidence 456788999999999999865432 1 11122233 3455666655555455554 44467666554 322
Q ss_pred -----Ceeee---EEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC
Q 004327 597 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 658 (761)
Q Consensus 597 -----~~~~~---~~~~~~~i~~l~fsp---d~~~Llags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~sp 658 (761)
|..+. .+.....|..+.... +..+|+.++..|.++...+.. +.....+.. .+.+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22211 122334455554432 346899999999999887642 222233433 34555555444
Q ss_pred CCCEEEEEe-CCeEEEEECCCC----CCceeEEEee-cCCCceEEEEEeC------------------------------
Q 004327 659 SGEYLASVS-DELVRVWSIGSG----SKGECIHELS-CTGNKFHSCVFHP------------------------------ 702 (761)
Q Consensus 659 dg~~Lasgs-Dg~I~IWdl~s~----~~~~~i~~l~-~~~~~I~sl~fsp------------------------------ 702 (761)
+...|+..+ +|.+..|+...- ....-+.-+. .....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 444455455 888777775421 1101111111 1234455554443
Q ss_pred -----CCCEEEEEEcCCcEEEEECCCCcE--------E--EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004327 703 -----TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 757 (761)
Q Consensus 703 -----dg~~L~sgs~dg~I~IwDl~~~~~--------~--~l~~h~~~V~slafspdg~~LaSgs~DG~I 757 (761)
++.+|++++..|..+...+..... . .+....+.+..+.+..+...|+..+..|.+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887643222 1 222233455555444444445555555554
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=92.58 E-value=11 Score=39.17 Aligned_cols=232 Identities=9% Similarity=0.068 Sum_probs=127.2
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEE---------EeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEec---CCCCc-
Q 004327 489 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDY- 555 (761)
Q Consensus 489 pdg~~Lasgs~Dg~I~VWdl~t~~~~~---------~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl---~t~~~- 555 (761)
|+..++++.+.+|.|+--.+...+... .++.+ +.+..+........|+..+..|.++-+.. .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999888776543221 12222 34444444445567777778887666544 22111
Q ss_pred ----eeE---EeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecCCC
Q 004327 556 ----SLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 619 (761)
Q Consensus 556 ----~i~---~~~~h~~~V~sl~fsp--~g~~llasgs~Dg~I~vWDl~t-------~~~~~~~~~~~~i~~l~fspd~~ 619 (761)
++. .+. ....|.++...+ +....++..+.+|.++...+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 111 112 234566654422 2234455778899999987742 22222233335555555555667
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEECCCCC------Cce
Q 004327 620 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 683 (761)
Q Consensus 620 ~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IWdl~s~~------~~~ 683 (761)
.++..+.+|.+..|+... +.....+. ....|.++....++..|++.+ .|.++..++..-. ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222232 345677776555556666666 8888888773211 111
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 684 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 684 ~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
....+....+.+..+....+...++..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1122232334555554444556677888888776666644
No 366
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=92.57 E-value=13 Score=40.07 Aligned_cols=226 Identities=5% Similarity=0.002 Sum_probs=117.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc-----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 004327 523 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 591 (761)
Q Consensus 523 ~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~-----------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~v 591 (761)
.|..|+.. ....+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666654 44666677899999996543110 0011111234576766543 33334567999999
Q ss_pred EEC--CC-Cee--------eeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------------
Q 004327 592 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 638 (761)
Q Consensus 592 WDl--~t-~~~--------~~~~~~--~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-------------------- 638 (761)
|-. .. +.+ ...... ...|..++. ...+.++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 986 32 221 111111 123444443 4467778888999999953211
Q ss_pred ---eEEEEEcCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEECCCCC--------CceeEEEeecCCCceEEEEEeCCCCE
Q 004327 639 ---VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPS 706 (761)
Q Consensus 639 ---~~i~~l~~h~~~I~sl~~spdg~~Las-gsDg~I~IWdl~s~~--------~~~~i~~l~~~~~~I~sl~fspdg~~ 706 (761)
.+..........|..|+..... .++. ..|+.|+.|-..... ..............|..++. ...+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSE
T ss_pred cccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCe
Confidence 1111111223456666554322 2232 248889998754311 01111122222334554443 4456
Q ss_pred EEEEEcCCcEEEEECCCC---------c----EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 707 LLVIGCYETLELWNMTEN---------K----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 707 L~sgs~dg~I~IwDl~~~---------~----~~~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.++...+|.|+.|-.... . +..+......|..|+.... +.+.-..||.|+.|
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~w 370 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEE
Confidence 677788999999965321 1 1122233336777776533 33444688888888
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.22 E-value=23 Score=41.93 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCeEEEEEcCCCeEEEEeccC-------CcceEEEEEcCC-CCEEEEEeCCCe----E
Q 004327 479 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 545 (761)
Q Consensus 479 ~~~V~~lafSpd-g~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h-------~~~V~~v~fspd-g~~Lasgs~DG~----I 545 (761)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999995 45667777777766554 233333333322 246999999984 344555543311 3
Q ss_pred EEEecCCCCceeEEeecC-------C--CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCe
Q 004327 546 RVWDTENPDYSLRTFTGH-------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 609 (761)
Q Consensus 546 ~VWDl~t~~~~i~~~~~h-------~--~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-------~~~~i 609 (761)
.||.-..+.......... . ..+..++++|.....++.+...+.|. ...+.++.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433333332210 1 13567888886555555565344332 2222232222221 11357
Q ss_pred eEEEEecC-CCEEEEEEcC
Q 004327 610 TQMRFQPR-LGRILAAAIE 627 (761)
Q Consensus 610 ~~l~fspd-~~~Llags~d 627 (761)
..+.++|. .+.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 3466666655
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.21 E-value=11 Score=38.45 Aligned_cols=197 Identities=10% Similarity=-0.015 Sum_probs=111.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEE---ecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 597 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VW---Dl~t~~~~i~~~~~h~~~V~sl~fsp~-g~~llasgs~Dg~I~vWDl~t~ 597 (761)
+.+..+.......+|+.-+.+|.++-- ++......- +......|..+.. .+ .+..++..+.+|.|+...+...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 344444444444556666677766543 332211100 1223455666644 32 3456668888999999987543
Q ss_pred ------eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCE
Q 004327 598 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 662 (761)
Q Consensus 598 ------~~~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~~spdg~~ 662 (761)
.....++....+..+........++..+..|.++.++... |.....+. ....|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 2222233345566666666667899999999998887532 22222333 2356666655555666
Q ss_pred EEEEe-CCeEEEEECCCCC---C-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEE--EECCC
Q 004327 663 LASVS-DELVRVWSIGSGS---K-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 723 (761)
Q Consensus 663 Lasgs-Dg~I~IWdl~s~~---~-~~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~~ 723 (761)
++..+ .|.++...+..-. . ..-+..+ ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66666 8888888764311 1 1122222 23445555544444556888888888777 77643
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=91.88 E-value=13 Score=38.54 Aligned_cols=225 Identities=9% Similarity=0.028 Sum_probs=115.9
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCce--------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 004327 531 PSLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 596 (761)
Q Consensus 531 pdg~~Lasgs~DG~I~VWDl~t~~~~--------i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl---~t--- 596 (761)
|+..++++.+.+|.|+--.+.+-... ...+..+ +.+..+........++ ..++.|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 34567888999999987776542110 0112222 3344444433334455 3444676655543 22
Q ss_pred ---Ceeee---EEecCCCeeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcCCC
Q 004327 597 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 660 (761)
Q Consensus 597 ---~~~~~---~~~~~~~i~~l~fs---pd~~~Llags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~spdg 660 (761)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+....+.
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 12233445555432 3456799999999999887642 2222334434 555555544444
Q ss_pred C-EEEEEeCCeEEEEECCCC----CCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc--------E
Q 004327 661 E-YLASVSDELVRVWSIGSG----SKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------T 726 (761)
Q Consensus 661 ~-~LasgsDg~I~IWdl~s~----~~~~~i~~l~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~--------~ 726 (761)
. +++..++|.+..++...- ....-+..+. ..+..|..+....++..|++.+..|.++-.++.... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 4 444444888877776431 1111111111 134556666655566779999999988888763321 1
Q ss_pred E--EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004327 727 L--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 758 (761)
Q Consensus 727 ~--~l~~h~~~V~slafspdg~~LaSgs~DG~I~ 758 (761)
. .+....+.+..+....+...|+..+.+|.+.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 1 2222335555554444444455556666543
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.74 E-value=9.5 Score=44.71 Aligned_cols=223 Identities=10% Similarity=0.050 Sum_probs=112.8
Q ss_pred EEEE-EcCCCCEEEEE-eCC----CeEEEEecCCCCceeEEee-cCCC------CeEEEEEcCCCCcEEEEEe-------
Q 004327 525 TDVR-FSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------- 584 (761)
Q Consensus 525 ~~v~-fspdg~~Lasg-s~D----G~I~VWDl~t~~~~i~~~~-~h~~------~V~sl~fsp~g~~llasgs------- 584 (761)
..+. ++|++++++.+ |.. ..|+++|+.+++..--.+. .-+. ....++|..+ +.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 3444 88998877654 222 3799999998654211222 0001 1134478633 45554421
Q ss_pred ---CCCcEEEEECCCCe--eeeEEecCCC--eeEEEEecCCCE----EEE-EEc---CCeEEEEECCC--CeEEEEEcCC
Q 004327 585 ---NNSEIRYWSINNGS--CAGVFKCQSG--ATQMRFQPRLGR----ILA-AAI---ENYISILDVET--QVCRLKLQGH 647 (761)
Q Consensus 585 ---~Dg~I~vWDl~t~~--~~~~~~~~~~--i~~l~fspd~~~----Lla-gs~---dg~I~IwDl~t--~~~i~~l~~h 647 (761)
....|+.|.+-+.. -...+..... ......+.++++ +++ .+. ...+++.|... ++. ..+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC
Confidence 12468888886542 2233432222 233445566652 333 332 24677777663 332 223222
Q ss_pred CCCEEEEEEcCCCCEEEEE-----------eCCeEEEEECCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEE
Q 004327 648 KNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVI 710 (761)
Q Consensus 648 ~~~I~sl~~spdg~~Lasg-----------sDg~I~IWdl~s~~~~----~~i~~-l-~~~~~~I~sl~fspdg~~L~sg 710 (761)
... .+....++.+++.. ..+.|.++++.+.... ..... + ......+..+.|..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 221 12334455555522 1557888998764210 11112 2 223445677888876 455666
Q ss_pred EcCC--cEEEEECCCCc--EEE-Ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 004327 711 GCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 752 (761)
Q Consensus 711 s~dg--~I~IwDl~~~~--~~~-l~-~h~~~V~slafspdg~-~LaSgs 752 (761)
..++ .|+++|+.++. ... +. ...+.|..+.+++++. ++++.+
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 6666 57888876664 212 21 1134566666667665 444444
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.58 E-value=15 Score=38.56 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEE---cCC------CeEEEE---eccCCcceEEE-EEcC--CCCEEEEEeCCCeEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR 546 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWd---l~t------~~~~~~---l~~h~~~V~~v-~fsp--dg~~Lasgs~DG~I~ 546 (761)
+..+........|+.-+..|.++... +.. |..+.. +. ....|.++ .+.. +..++++++.+|.|+
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44444444445666666677766554 322 222211 22 23445554 4432 577999999999999
Q ss_pred EEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC--C---------CeeeeEEecCCCe
Q 004327 547 VWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSGA 609 (761)
Q Consensus 547 VWDl~t~~~------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~--t---------~~~~~~~~~~~~i 609 (761)
...+..-.. ....+.. .+.+..+........++ ..+..|.+..+.+. . |.....+.....+
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 987654211 1112333 34455555544444444 55568888877766 2 1111122334456
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCC-------eEEE--EEcCCCCCEEEEEEcCCC-CEEEEEeCCeEEEEECC
Q 004327 610 TQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIG 677 (761)
Q Consensus 610 ~~l~fspd~~~Llags~dg~I~IwDl~t~-------~~i~--~l~~h~~~I~sl~~spdg-~~LasgsDg~I~IWdl~ 677 (761)
..+...+.+.+++.++..|.++...+... +-+. .+..-.+.+..+....+. .+++...+|.+..++..
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 66666666678999999999988875421 1122 222223445555444333 34444447777777654
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=90.69 E-value=32 Score=40.67 Aligned_cols=144 Identities=11% Similarity=0.148 Sum_probs=72.5
Q ss_pred CcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeCCCc----
Q 004327 521 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 588 (761)
Q Consensus 521 ~~~V~~v~fspd-g~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-------~~~V~sl~fsp~g~~llasgs~Dg~---- 588 (761)
...|.+|+++|. ...++++...+.|...+ .+......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 458999999985 45667777777665444 223233333322 2469999999864444434332211
Q ss_pred EEEE-ECCCCeeeeEEecC--------C--CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC------CCCC
Q 004327 589 IRYW-SINNGSCAGVFKCQ--------S--GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG------HKNQ 650 (761)
Q Consensus 589 I~vW-Dl~t~~~~~~~~~~--------~--~i~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~------h~~~ 650 (761)
-.|| ..+.++.-..+... . .+..++++|.. +.++++...+.|+. ..+.++.-..+.. ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2333 33334333332211 1 24568888754 45555553444332 2222221112211 1245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 004327 651 VHSVCWNTS-GEYLASVS 667 (761)
Q Consensus 651 I~sl~~spd-g~~Lasgs 667 (761)
+..|.++|. +..|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 888999874 34455444
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.01 E-value=24 Score=36.72 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=107.0
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCc------ee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CC-
Q 004327 530 SPSLSRLATSSADRTVRVWDTENPDY------SL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NG- 597 (761)
Q Consensus 530 spdg~~Lasgs~DG~I~VWDl~t~~~------~i--~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t~- 597 (761)
-++..++++.+.+|.|+-..+..-.. -+ ..+.. .+.+..+........++ ..+..|.++-+... ..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC--
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCC
Confidence 34667889999999999887653211 01 11222 23444444444434444 55667877766553 11
Q ss_pred -----ee---eeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcCC
Q 004327 598 -----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 659 (761)
Q Consensus 598 -----~~---~~~~~~~~~i~~l~fsp---d~~~Llags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~spd 659 (761)
.. ...+.....+..+...+ +..+++.++..|.++...+.. +.....+.. .+.+..+....+
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 11 11122334455544333 457899999999999887743 233333443 456666655544
Q ss_pred CCEEEEEe-CCeEEEEECCCC----CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 660 GEYLASVS-DELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 660 g~~Lasgs-Dg~I~IWdl~s~----~~~~~i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
+..|+..+ +|.+..+.+..- ....-+..+.. ....|..+....++..|++.+..|.++.+++..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 45455555 898888887531 11111222221 245566666666667799999999988888744
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.22 E-value=25 Score=35.93 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEE---EcCCCeEEEEeccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecCCCC-
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 554 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VW---dl~t~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~DG~I~VWDl~t~~- 554 (761)
+.|.++.......+|+..+.+|.++-- ++........+. ....|..+.... +..+++.++.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345555554445566666777776654 332221111133 345566664421 46789999999999999876421
Q ss_pred ----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEEecCCCEE
Q 004327 555 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 621 (761)
Q Consensus 555 ----~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t---------~~~~~~~~~~~~i~~l~fspd~~~L 621 (761)
.....+.. .+.+..+........++ ..+..|.++.++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 11112232 34566655554444444 566688888877532 1121223334456666656666789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCeEEE--EECC
Q 004327 622 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRV--WSIG 677 (761)
Q Consensus 622 lags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~sp-dg~~LasgsDg~I~I--Wdl~ 677 (761)
+..+..|.++...+.. ++-+..+ ...+.+..+.... +..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999998887642 2222223 2334454443333 333444444776666 6653
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.20 E-value=30 Score=36.89 Aligned_cols=234 Identities=11% Similarity=0.044 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCC-----------eEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 549 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-----------~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~DG~I~VWD 549 (761)
|..|+.. ....+.-..||.|+.|-.... .....+.. ....+..++++......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4444432 345555567888888843211 11122221 223455567766667777778899999996
Q ss_pred cCCCC----------ceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------ee--eEEec--
Q 004327 550 TENPD----------YSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFKC-- 605 (761)
Q Consensus 550 l~t~~----------~~i~~~~~h-~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~---------~~--~~~~~-- 605 (761)
..... .....+... ...|..|+.-. ...+.-..+|.|+.|-....- .. ..+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 53211 001111111 22566666542 333345569999999764310 11 11111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 004327 606 QSGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 673 (761)
Q Consensus 606 ~~~i~~l~fspd~~~Llags~dg~I~IwDl~t----------~-~~i~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~I 673 (761)
...+..++......+.++...+|.|+.|-... . .....+.. ....|..|+...+ ..++...|+.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 12355555544346777888899999996432 1 11112221 1224666665432 2333444889999
Q ss_pred EECCCC------CCce--eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 674 WSIGSG------SKGE--CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 674 Wdl~s~------~~~~--~i~~l~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
|-.... .... ....+. .....|..++. ...+.++...++.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 976431 0001 111111 12234555444 444567778899999997643
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=87.21 E-value=31 Score=36.03 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=103.3
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC------Ce
Q 004327 531 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 598 (761)
Q Consensus 531 pdg~~Lasgs~DG~I~VWDl~t~---~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl---~t------~~ 598 (761)
|+..++++.+.+|.|+--.+..- ......+... +.+..+........++ ..++.|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678899999999987765411 1111123333 3444444444444555 4445777665544 21 22
Q ss_pred eee---EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCC--------CeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 004327 599 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET--------QVCRLKLQGHKNQVHSVCWNTSGEYLA 664 (761)
Q Consensus 599 ~~~---~~~~~~~i~~l~fspd---~~~Llags~dg~I~IwDl~t--------~~~i~~l~~h~~~I~sl~~spdg~~La 664 (761)
.+. .+.....|..+...++ +.+++.++..|.++...+.. +.....+... +.+..+........|+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1222334555433332 56899999999999987742 2222233322 5555555544444444
Q ss_pred EEe-CCeEEEEECCCC----CCceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCcEEEEECCC
Q 004327 665 SVS-DELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 723 (761)
Q Consensus 665 sgs-Dg~I~IWdl~s~----~~~~~i~~l~~-~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~~ 723 (761)
..+ +|.+..++...- ....-+.-+.- .+..|.++...+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 444 888888876431 11112222221 234566665545455 799999999888777644
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=81.54 E-value=87 Score=36.49 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=54.6
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCceeEEeecC-------CCCeEEEEEcCCC-CcEEEEEeC-C-----C
Q 004327 523 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N-----S 587 (761)
Q Consensus 523 ~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h-------~~~V~sl~fsp~g-~~llasgs~-D-----g 587 (761)
.|..|+|+|.. ..|+++...+.|..++- .......+..+ ...|.+|+++|.. +.+++.++. . +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D--~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP--STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET--TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC--CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 79999999863 45666665666555542 23333333322 2458999999854 345544431 0 1
Q ss_pred cEEEEECC-CCeeeeEEecC----------CCeeEEEEecCC-CEEEEEEcC
Q 004327 588 EIRYWSIN-NGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIE 627 (761)
Q Consensus 588 ~I~vWDl~-t~~~~~~~~~~----------~~i~~l~fspd~-~~Llags~d 627 (761)
...||.-. .++.-..+... ..+..++++|.. +.++++...
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 23444433 33322222211 113678898854 556666533
No 378
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.72 E-value=1.1e+02 Score=37.02 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.6
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677788888999999999999999999999988753
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=78.31 E-value=1.1e+02 Score=35.67 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=56.9
Q ss_pred CeEEEEEcCCC-CEEEEEECCCeEEEEEcCCCeEEEEeccC-------CcceEEEEEcC-CCCEEEEEeCC-------Ce
Q 004327 481 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 544 (761)
Q Consensus 481 ~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~~h-------~~~V~~v~fsp-dg~~Lasgs~D-------G~ 544 (761)
.|..|+|+|.. ..|+++...+.|..++- .++.-..+..+ ...|.+|++.| +...|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999953 45666666666666542 33333333222 24599999998 33445444321 12
Q ss_pred EEEEecCCCCceeEEeec-CC--------CCeEEEEEcCCCCcEEEEEe
Q 004327 545 VRVWDTENPDYSLRTFTG-HS--------TTVMSLDFHPSKEDLLCSCD 584 (761)
Q Consensus 545 I~VWDl~t~~~~i~~~~~-h~--------~~V~sl~fsp~g~~llasgs 584 (761)
..||.-..+......... .. ..+.+|+++|.....++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 456655544333332221 11 12467999987655555555
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.63 E-value=80 Score=33.79 Aligned_cols=165 Identities=7% Similarity=0.054 Sum_probs=90.2
Q ss_pred eEEEEEcCCC--eEEEEecc------CCcceEEEEEc---CC----CCEEEEEe-CCCeEEEEecCCCCceeEEee----
Q 004327 502 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 561 (761)
Q Consensus 502 ~I~VWdl~t~--~~~~~l~~------h~~~V~~v~fs---pd----g~~Lasgs-~DG~I~VWDl~t~~~~i~~~~---- 561 (761)
+|.+||+.+. +.++++.- ....+.++++. ++ +.+++.+. .+.-|.|+|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6888999998 88877642 23457888887 22 23444443 467899999987653 23221
Q ss_pred ----------cC----CCCeEEEEEcCC----CCcEEEEEeCCCcEEEEE---CCCC---eeeeEEecC---CCeeEEEE
Q 004327 562 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMRF 614 (761)
Q Consensus 562 ----------~h----~~~V~sl~fsp~----g~~llasgs~Dg~I~vWD---l~t~---~~~~~~~~~---~~i~~l~f 614 (761)
+. ...|..|+++|+ ++.+.+..-....++-.. ++.. ..+..+-.. .....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 135778888887 455554444333343332 1221 122222222 22334566
Q ss_pred ec-CCCEEEEEEcCCeEEEEECCC-C----e-EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 004327 615 QP-RLGRILAAAIENYISILDVET-Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 615 sp-d~~~Llags~dg~I~IwDl~t-~----~-~i~~l~~h~~~I~sl~~spdg~~Lasgs 667 (761)
++ +|..+++--..+.|..|+..+ . . .+......-..+..+.+..+|.+.+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 54 444444445568999999876 2 1 1111111233567777777776555443
No 381
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=77.11 E-value=82 Score=33.63 Aligned_cols=228 Identities=12% Similarity=0.152 Sum_probs=111.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc----------eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIR 590 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~----------~i~~~~~-h~~~V~sl~fsp~g~~llasgs~Dg~I~ 590 (761)
..|..|+.. ....+.-..||.|+.|-...... ....+.. ....|..++.-.. +.++....++.|+
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 456666553 33455556788888886443110 0111111 1235777766532 3443333345999
Q ss_pred EEECCCC---------eeee--EEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEcC
Q 004327 591 YWSINNG---------SCAG--VFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG 646 (761)
Q Consensus 591 vWDl~t~---------~~~~--~~~~~~--~i~~l~fspd~~~Llags~dg~I~IwDl~t~----------~-~i~~l~~ 646 (761)
.|-.... .... .+.... .|..++. ...+.++...+|.|+.|-.... . ....+..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 9965421 0111 111111 3444443 4467788888999999965421 1 1111221
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCC------c-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCcE
Q 004327 647 -HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETL 716 (761)
Q Consensus 647 -h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~------~-~~i-~~l~-~~~~~I~sl~fspdg~~L~sgs~dg~I 716 (761)
....|..|+...+ ..++...||.|+.|-...... . ... ..+. .....|..++. ...+.++...++.|
T Consensus 170 ~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 170 FEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp GTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred cCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 1235666665322 233334488999997543210 0 111 1111 11234544443 44556777888999
Q ss_pred EEEECCCCc----------EE--EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 717 ELWNMTENK----------TL--TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 717 ~IwDl~~~~----------~~--~l~~-h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
+.|-....- .. .+.. ....|..|+.. ..+.+.-..||.|+.|
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGW 301 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEe
Confidence 999653321 11 1111 12346666543 2344445677777777
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=76.48 E-value=85 Score=33.50 Aligned_cols=267 Identities=9% Similarity=0.053 Sum_probs=131.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCC-C----------eEEEEecc-CCcceEEEEEcCCCCEEEEEeCC-CeEE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-F----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 546 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t-~----------~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~D-G~I~ 546 (761)
..|..|+.- ..+.+.-..||.|+.|=... + .....+.. ....|..|+...+ +.+....| +.|+
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 346666554 33555556788888884322 1 11122221 2235777776433 33334455 5999
Q ss_pred EEecCCCC--------c--eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---------e--eEEe
Q 004327 547 VWDTENPD--------Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------A--GVFK 604 (761)
Q Consensus 547 VWDl~t~~--------~--~i~~~~~-h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~---------~--~~~~ 604 (761)
.|-..... . ....+.. ....|..|+.- ....+.-..||.|+.|-....-. . ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99643211 0 0111111 22357777664 23344456799999997653210 0 1111
Q ss_pred cCC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eEE-EEEcC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 004327 605 CQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------VCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDEL 670 (761)
Q Consensus 605 ~~~--~i~~l~fspd~~~Llags~dg~I~IwDl~t~----------~~i-~~l~~-h~~~I~sl~~spdg~~LasgsDg~ 670 (761)
... .|..++ ....+.++...+|.|+.|-.... ... ..+.. ....|..++...+ ..++...++.
T Consensus 169 ~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVA--AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCC
T ss_pred ccCCCcEEEEe--cCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCC
Confidence 111 344443 34467777888999999964321 111 11111 2245666654322 2333344889
Q ss_pred EEEEECCCCCC------c-ee-EEEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEEECCCCc------------EEEE
Q 004327 671 VRVWSIGSGSK------G-EC-IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK------------TLTL 729 (761)
Q Consensus 671 I~IWdl~s~~~------~-~~-i~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~------------~~~l 729 (761)
|+.|-...... . .. ...+.. ....|..++. ...+.++...++.|+.|-....- +..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 99997543210 0 11 111111 1223444433 44556777888999999653311 1111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 730 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 730 ~-~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
. .....|..|+.. ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 123456666654 3344555678888887
No 383
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=74.59 E-value=94 Score=33.12 Aligned_cols=226 Identities=11% Similarity=0.091 Sum_probs=116.3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCCc------------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 589 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t~~~------------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I 589 (761)
..|..|+... ...+.-..||.|+.|-...... ....+ .....|..|+.-. ...+.-..||.|
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~---~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD---SHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS---SEEEEEETTSCE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC---CeEEEEcCCCcE
Confidence 5577776643 3555566899999996543110 00111 1234677666542 334455668999
Q ss_pred EEEEC--CC-Cee-----------eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------------
Q 004327 590 RYWSI--NN-GSC-----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------------- 638 (761)
Q Consensus 590 ~vWDl--~t-~~~-----------~~~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~----------------- 638 (761)
+.|-. +. +.+ ...+.....|..++. ...+.++...+|.|+.|=....
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 99975 22 111 111112234444443 3457777788999999965421
Q ss_pred ------eEE-EEEcC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCC------cee--EEEeecCC---CceE
Q 004327 639 ------VCR-LKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------GEC--IHELSCTG---NKFH 696 (761)
Q Consensus 639 ------~~i-~~l~~----h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~------~~~--i~~l~~~~---~~I~ 696 (761)
.+. ..+.. ....|..|+...+ ..++...||.|+.|-...... ... -..+.... ..|.
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 010 01110 2245666665433 233334588999997653210 011 11111111 2354
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEECCC----------CcE-E-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEc
Q 004327 697 SCVFHPTFPSLLVIGCYETLELWNMTE----------NKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 760 (761)
Q Consensus 697 sl~fspdg~~L~sgs~dg~I~IwDl~~----------~~~-~-~l~~h~~~V~slafspdg~~LaSgs~DG~I~IW 760 (761)
.++. ...+.++...+|.|+.|-... ... . ........|..|+... .+.+.-..||.|+.|
T Consensus 290 ~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~--~hs~alt~~G~v~~w 361 (413)
T 1a12_A 290 GFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECS--SEEEEEETTSCEEEE
T ss_pred EEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECc--ceEEEEeCCCCEEEe
Confidence 4443 445567778899999996532 111 1 2222223677776543 344555678888887
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=73.52 E-value=1.3e+02 Score=34.05 Aligned_cols=228 Identities=9% Similarity=0.043 Sum_probs=118.8
Q ss_pred CCCCeEEEEEcCCCCE-EEEEECCCe----------------------------EEEEEcCCCeEEEEeccC--Ccc---
Q 004327 478 STSKVESCHFSPDGKL-LATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 523 (761)
Q Consensus 478 H~~~V~~lafSpdg~~-Lasgs~Dg~----------------------------I~VWdl~t~~~~~~l~~h--~~~--- 523 (761)
|-..+....|.-||+. |++.+.+|+ |.|+|-.+++.+.++.-. ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 6667888888888874 777766665 788888888877665321 111
Q ss_pred ------------eEEEEEcC-CCCEEEEEe---CCCeEEEEecCCCCceeE-EeecC-----------CCCeEEEEEcCC
Q 004327 524 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSLR-TFTGH-----------STTVMSLDFHPS 575 (761)
Q Consensus 524 ------------V~~v~fsp-dg~~Lasgs---~DG~I~VWDl~t~~~~i~-~~~~h-----------~~~V~sl~fsp~ 575 (761)
..++++.. +...++.+- ....|..||+.+++...+ .+... ...+.-.++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 23444321 112333332 122477888876543211 12111 123444556666
Q ss_pred CCcEEEEEe----CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC--CEEEEEEcCC----eEEEEECCCCeEEEEEc
Q 004327 576 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIEN----YISILDVETQVCRLKLQ 645 (761)
Q Consensus 576 g~~llasgs----~Dg~I~vWDl~t~~~~~~~~~~~~i~~l~fspd~--~~Llags~dg----~I~IwDl~t~~~i~~l~ 645 (761)
|..-|+.|+ .||++ +|.... .+...+....|.|+. -.++.+..++ -..++|..+++.+....
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~~-------gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTGL-------GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECSC-------CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCceEEEeeeEECCCCCE-eeeCCC-------CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 666555543 33433 444421 233445666677764 3555555541 45678999999998876
Q ss_pred CC--CCCEEEEEEcCCCC--EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCcEEEEE
Q 004327 646 GH--KNQVHSVCWNTSGE--YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWN 720 (761)
Q Consensus 646 ~h--~~~I~sl~~spdg~--~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwD 720 (761)
.. .+......|.|+.. -+.+ +. .+|+.... .+.... ....-..+-|.-|.. .|+- .+.|.-|+
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred CCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 43 34444445556532 2222 22 35555432 111110 111122456666653 2332 23688888
Q ss_pred CCCCc
Q 004327 721 MTENK 725 (761)
Q Consensus 721 l~~~~ 725 (761)
...+.
T Consensus 477 ~~~~~ 481 (591)
T 2zux_A 477 YQNGV 481 (591)
T ss_dssp TTTTE
T ss_pred cCCCc
Confidence 77775
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.40 E-value=1.1e+02 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 693 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 693 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
..+.+++..++..++++.+.|++++||++.++.++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 45677888889999999999999999999999887
No 386
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=68.11 E-value=1.4e+02 Score=32.47 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCee----------e--eEEecCC--CeeEEEEecCCCEEEEEEcC
Q 004327 565 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC----------A--GVFKCQS--GATQMRFQPRLGRILAAAIE 627 (761)
Q Consensus 565 ~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t~~~----------~--~~~~~~~--~i~~l~fspd~~~Llags~d 627 (761)
..|..|+... ...+.-..+|.|+.|-.. .+.+ . ..+.... .|..++. ...+.++...+
T Consensus 148 ~~i~~va~G~---~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD---NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS---SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcEEEEEccC---CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCC
Confidence 4566666542 333345668999999751 1111 0 0111111 2444443 44677788889
Q ss_pred CeEEEEECCCC-e--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCC------c---e
Q 004327 628 NYISILDVETQ-V--------------CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---E 683 (761)
Q Consensus 628 g~I~IwDl~t~-~--------------~i~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~------~---~ 683 (761)
|.|+.|-.... . ....+ ....|..|+... ...++...+|.|+.|-...... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~-~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGE-NHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECS-SEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCC-CeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 99999965421 0 00001 113566665432 2233334488899997543110 0 0
Q ss_pred eE---EEeec-CCCceEEEEEeCCCCEEEEEEcCCcEEEEEC
Q 004327 684 CI---HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 721 (761)
Q Consensus 684 ~i---~~l~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 721 (761)
.+ ..+.. ....|..++. ...+.++...+|.|+.|-.
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA--GEHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE--CSSEEEEEETTSCEEEEEE
T ss_pred eeeccccccccCCccEEEEEe--CCCeEEEEeCCCeEEEEEC
Confidence 11 11111 1234554444 3345566678888888864
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.73 E-value=1e+02 Score=34.96 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=42.7
Q ss_pred eeEEEEecCCCEEEEEEcC------------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 004327 609 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 609 i~~l~fspd~~~Llags~d------------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs 667 (761)
.-.|+|++.++.+++-..+ +.+.+++..+++....+.+. ..+++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4668999998855554432 34677788888776666554 46899999999998887653
No 388
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.81 E-value=1.1e+02 Score=35.66 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEcCCCeEEEEec
Q 004327 481 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 518 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~~~~~~l~ 518 (761)
.|.|+.+ +..+|++-+.|+++|+||+.++.++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4666555 46799999999999999999999887664
No 389
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=53.07 E-value=2.3e+02 Score=30.00 Aligned_cols=229 Identities=8% Similarity=-0.070 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEcCCC-------------eEEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 004327 482 VESCHFSPDGKLLATGGHDKKAVLWCTESF-------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 548 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~-------------~~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VW 548 (761)
|..|+.. +.+.+.-..||.|+.|-.... .....+. ....|..|+... ...+....||.|+.|
T Consensus 77 v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~--~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 77 AVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD--SHSACLLEDGRVFAW 151 (423)
T ss_dssp EEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS--SEEEEEETTSCEEEE
T ss_pred ceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc--CeEEEEeCCCeEEEE
Confidence 6555543 445566677888888843221 0111121 223566666543 355556789999999
Q ss_pred ec--CCCCc---------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----------------
Q 004327 549 DT--ENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----------------- 600 (761)
Q Consensus 549 Dl--~t~~~---------~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~----------------- 600 (761)
-. ..... ...........|..|+.-. ...+.-..+|.|+.|-....-.+
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 75 22111 0111111234566676543 33334556899999975431100
Q ss_pred -----eEEe--cCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC-----------CeEEEEEcCCCCCEEEEEEcCCCC
Q 004327 601 -----GVFK--CQSGATQMRFQPRLGRILAA-AIENYISILDVET-----------QVCRLKLQGHKNQVHSVCWNTSGE 661 (761)
Q Consensus 601 -----~~~~--~~~~i~~l~fspd~~~Llag-s~dg~I~IwDl~t-----------~~~i~~l~~h~~~I~sl~~spdg~ 661 (761)
..+. ....+..++... ...++. ..+|.|+.|-... .............|..|+... ..
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~-~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN--YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ-HH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET--TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS-SE
T ss_pred cccCCeEEeecCCccEEEEEECC--cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc-Ce
Confidence 0111 112234444332 233333 4788888885332 111111111234566665432 22
Q ss_pred EEEEEeCCeEEEEECCCC------CCc---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEECCC
Q 004327 662 YLASVSDELVRVWSIGSG------SKG---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 723 (761)
Q Consensus 662 ~LasgsDg~I~IWdl~s~------~~~---~~i~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~~ 723 (761)
.++...||.|+.|-.... ... .....+......|..++.- ..+.++...+|.|+.|-...
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCT
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCC
Confidence 334444889999975421 110 1111222222356655554 34556668899999996543
No 390
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=52.31 E-value=91 Score=26.84 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=29.4
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 619 GRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 619 ~~Llags~dg~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
.+.+.-..||.+.+|+...+..+..-... ...-..+.+..+|.+++...++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 34444445555555554323333332211 112235677778887776545544 777654
No 391
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=50.99 E-value=2e+02 Score=28.65 Aligned_cols=142 Identities=8% Similarity=-0.054 Sum_probs=76.9
Q ss_pred EEEEEECCCeEEEEEcCCCeE-EEEeccCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC---C---Ccee---EEeec
Q 004327 493 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P---DYSL---RTFTG 562 (761)
Q Consensus 493 ~Lasgs~Dg~I~VWdl~t~~~-~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t---~---~~~i---~~~~~ 562 (761)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.++-+.+.. . ..++ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455667777776655433211 1123333 3344444433445667777888766654422 1 1111 0121
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEe-cCCCEEEEEEcCCeEEEEE
Q 004327 563 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 634 (761)
Q Consensus 563 h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t-------~~~~~~~~~~~~i~~l~fs-pd~~~Llags~dg~I~IwD 634 (761)
....|.++....++ ..++.++..|.++...+.. +.....+.....+..+... ..+..++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~-~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTT-CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCC-CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 23456666443333 3445778899999988742 2333333333445555555 3456899999999998888
Q ss_pred CCC
Q 004327 635 VET 637 (761)
Q Consensus 635 l~t 637 (761)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 392
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.98 E-value=3.6e+02 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.5
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004327 609 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 645 (761)
Q Consensus 609 i~~l~fspd~~~Llags~dg~I~IwDl~t~~~i~~l~ 645 (761)
+.+++..++..++++.+.|++++||++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556677788899999999999999999999988754
No 393
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=48.00 E-value=99 Score=26.26 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.7
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 653 SVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 653 sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
.+.+..||.+++...++. .||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 467778888776544443 3676543
No 394
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=47.48 E-value=3.9e+02 Score=31.01 Aligned_cols=147 Identities=8% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCceeEEeec------------CCCCeEEEEEcCCC-CcEEEEEeC
Q 004327 520 HTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG------------HSTTVMSLDFHPSK-EDLLCSCDN 585 (761)
Q Consensus 520 h~~~V~~v~fspdg-~~Lasgs~DG~I~VWDl~t~~~~i~~~~~------------h~~~V~sl~fsp~g-~~llasgs~ 585 (761)
-.+.|.+|+++|.+ ..++++...|.|... ..+......+.. ....|.+|+++|.. +.+++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999965 566667666654433 333322332221 12358999999853 344443331
Q ss_pred ----CCcEEEE-ECCCCeeeeEEecC--------CC-e-eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---
Q 004327 586 ----NSEIRYW-SINNGSCAGVFKCQ--------SG-A-TQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--- 646 (761)
Q Consensus 586 ----Dg~I~vW-Dl~t~~~~~~~~~~--------~~-i-~~l~fspd~-~~Llags~dg~I~IwDl~t~~~i~~l~~--- 646 (761)
.....|| ..+.++.-..+... +. + ..++++|.. +.+++++.++.|+. ..+.++.-..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 1113333 33334332222211 11 1 368888753 55666655444332 2222221111111
Q ss_pred ---CCCCEEEEEEcCCC--CEEEEEeCC
Q 004327 647 ---HKNQVHSVCWNTSG--EYLASVSDE 669 (761)
Q Consensus 647 ---h~~~I~sl~~spdg--~~LasgsDg 669 (761)
....+..|+++|.. .+++...++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11357788998753 344433343
No 395
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=47.38 E-value=3e+02 Score=29.73 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=95.0
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEecCC----------CC--c--eeEEeecC-CCCeEEEEEcCCCCcEEEEEeCC
Q 004327 522 QWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PD--Y--SLRTFTGH-STTVMSLDFHPSKEDLLCSCDNN 586 (761)
Q Consensus 522 ~~V~~v~fspdg~~Lasgs~DG~I~VWDl~t----------~~--~--~i~~~~~h-~~~V~sl~fsp~g~~llasgs~D 586 (761)
..|..|+... ...+.-..||.|+.|-... .. . ....+... ...|..|+.-. ...+.-..+
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 4566666543 3555557889999997510 00 0 00111111 22477776643 334455678
Q ss_pred CcEEEEECCCCeeee--------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eE
Q 004327 587 SEIRYWSINNGSCAG--------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VC 640 (761)
Q Consensus 587 g~I~vWDl~t~~~~~--------------~~~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~------------~~ 640 (761)
|.|+.|-......+. .......|..++. ...+.++...+|.|+.|-.... ..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999999765321110 0000123444433 3456777778899999954320 11
Q ss_pred E---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc-------------------eeE-EEeecCC-Cce
Q 004327 641 R---LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG-------------------ECI-HELSCTG-NKF 695 (761)
Q Consensus 641 i---~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~IWdl~s~~~~-------------------~~i-~~l~~~~-~~I 695 (761)
+ ..+.. ....|..|+.... ..++...||.|+.|-....... ..+ ....... ..|
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred eeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 1 11111 2235666665322 2233344888888875431100 001 1111111 145
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEECC
Q 004327 696 HSCVFHPTFPSLLVIGCYETLELWNMT 722 (761)
Q Consensus 696 ~sl~fspdg~~L~sgs~dg~I~IwDl~ 722 (761)
..++. ...+.++...+|.|+.|-..
T Consensus 380 ~~Ia~--G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAA--GSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEEEe--CCCeEEEEeCCCcEEEeeCC
Confidence 44443 44556777889999999654
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.87 E-value=3.9e+02 Score=30.04 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCc----------------------------EEEEECCCCeeeeEEecC---CCe--
Q 004327 563 HSTTVMSLDFHPSKEDLLCSCDNNSE----------------------------IRYWSINNGSCAGVFKCQ---SGA-- 609 (761)
Q Consensus 563 h~~~V~sl~fsp~g~~llasgs~Dg~----------------------------I~vWDl~t~~~~~~~~~~---~~i-- 609 (761)
|...+...+|.-||..-++....+|+ |.++|=.+|+.+..+... +.+
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 34455666666666555555544443 788888888888776542 111
Q ss_pred -------------eEEEE-ecCCCEEEEEE---cCCeEEEEECCCCeEEE--EEcCCC-----------CCEEEEEEcCC
Q 004327 610 -------------TQMRF-QPRLGRILAAA---IENYISILDVETQVCRL--KLQGHK-----------NQVHSVCWNTS 659 (761)
Q Consensus 610 -------------~~l~f-spd~~~Llags---~dg~I~IwDl~t~~~i~--~l~~h~-----------~~I~sl~~spd 659 (761)
.++++ .-+...++++- ....|..||.+.++... .+.... ..+.-..+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 12222 11112333332 12358889988876533 333211 12333344444
Q ss_pred CC-EEEEEe-----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCC----cEEEEECCCCcEE
Q 004327 660 GE-YLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 727 (761)
Q Consensus 660 g~-~Lasgs-----Dg~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg--~~L~sgs~dg----~I~IwDl~~~~~~ 727 (761)
|+ -|+.++ ||+ .+|... .+|...++...|.|+. ..++.+.+++ ...++|..+++++
T Consensus 337 G~dEIv~Gs~~iD~dG~-~L~st~-----------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGK-GMYSTG-----------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSCEEEETTEEECTTSC-EEEECS-----------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCceEEEeeeEECCCCC-EeeeCC-----------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 42 222221 332 255542 2566777777777774 3566655542 4556788888877
No 397
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=41.29 E-value=2.8e+02 Score=27.55 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=74.6
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---C----Ceee-e--EE
Q 004327 534 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N----GSCA-G--VF 603 (761)
Q Consensus 534 ~~Lasgs~DG~I~VWDl~t~~~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~---t----~~~~-~--~~ 603 (761)
..+++.+.+|.|+--...........+... +.+..+........+++ .+..|.++-+.+. . |..+ . .+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~-~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVF-VDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEE-EETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEE-EeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 345667778887766544321111123333 33444433333344553 4457776655432 1 2211 1 12
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEE
Q 004327 604 KCQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVW 674 (761)
Q Consensus 604 ~~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~~s-pdg~~Lasgs-Dg~I~IW 674 (761)
.....|..+....++.+|+.++..|.++...+.. +.....+.. .+.+..+... .++..|+..+ +|.+..|
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 2234566664434567789999999999887642 334444443 3455555554 2344455555 8888888
Q ss_pred ECCC
Q 004327 675 SIGS 678 (761)
Q Consensus 675 dl~s 678 (761)
++..
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8743
No 398
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=40.13 E-value=4.9e+02 Score=30.11 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCeEEEEEcCCCeEEEEecc------------CCcceEEEEEcC-CCCEEEEEeCC-
Q 004327 478 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSP-SLSRLATSSAD- 542 (761)
Q Consensus 478 H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWdl~t~~~~~~l~~------------h~~~V~~v~fsp-dg~~Lasgs~D- 542 (761)
-.+.|.+|+++|.. ..++++...|.|...+ +.++.-..+.. ....|.+|++.| +...++++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 34579999999965 5666677667655443 23333322221 224589999988 33444444321
Q ss_pred ----CeEEEEecCCCCceeEEeecC-------CCC--eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-c---
Q 004327 543 ----RTVRVWDTENPDYSLRTFTGH-------STT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C--- 605 (761)
Q Consensus 543 ----G~I~VWDl~t~~~~i~~~~~h-------~~~--V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~-~--- 605 (761)
....||.-..+.......... .+. ...++++|.....++.+..++.|. ...+.++.-..+. .
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 124455444333223322210 111 246888886544444454444333 2222232221111 1
Q ss_pred ---CCCeeEEEEecCC-CEEEEEEcCC
Q 004327 606 ---QSGATQMRFQPRL-GRILAAAIEN 628 (761)
Q Consensus 606 ---~~~i~~l~fspd~-~~Llags~dg 628 (761)
...+..+.++|.. +.++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1246778888753 4566666664
No 399
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.36 E-value=90 Score=35.36 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=43.8
Q ss_pred CeeEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 004327 608 GATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 667 (761)
Q Consensus 608 ~i~~l~fspd~~~Llags~------------dg~I~IwDl~t~~~i~~l~~h-~~~I~sl~~spdg~~Lasgs 667 (761)
....+.|+++|..+++... .+.|+.++..+++....+... ...++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567999999877664432 126888888888776666543 45789999999999888764
No 400
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.87 E-value=77 Score=36.04 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.3
Q ss_pred eEEEEEcCCCCEEEEEECC------------CeEEEEEcCCCeEEEEeccC-CcceEEEEEcCCCCEEEEE
Q 004327 482 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 539 (761)
Q Consensus 482 V~~lafSpdg~~Lasgs~D------------g~I~VWdl~t~~~~~~l~~h-~~~V~~v~fspdg~~Lasg 539 (761)
.--|+|+++|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4668999999876654332 23556677777776666554 3679999999999887765
No 401
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=37.29 E-value=5e+02 Score=29.37 Aligned_cols=239 Identities=11% Similarity=0.097 Sum_probs=119.4
Q ss_pred CCCCeEEEEEcCCCCE-EEEEECCCe----------------------------EEEEEcCCCeEEEEeccC--Cc----
Q 004327 478 STSKVESCHFSPDGKL-LATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQ---- 522 (761)
Q Consensus 478 H~~~V~~lafSpdg~~-Lasgs~Dg~----------------------------I~VWdl~t~~~~~~l~~h--~~---- 522 (761)
|-..+....|.-||+. |++.+.+|+ +.|+|-.+++.+.++.-. ..
T Consensus 181 hyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~rg~~~~ 260 (620)
T 2zuy_A 181 HYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLED 260 (620)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCSGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCcceeeecccCCCcCcccc
Confidence 6677888888888874 666666665 488888888777665321 11
Q ss_pred -----------ceEEEEEcC-CCCEEEEEe---CCCeEEEEecCCCCceeE-EeecC-----------CCCeEEEEEcCC
Q 004327 523 -----------WITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSLR-TFTGH-----------STTVMSLDFHPS 575 (761)
Q Consensus 523 -----------~V~~v~fsp-dg~~Lasgs---~DG~I~VWDl~t~~~~i~-~~~~h-----------~~~V~sl~fsp~ 575 (761)
...++++.. +...++.+- ....|..||+..++.... .+... ...+...++.-|
T Consensus 261 WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGD 340 (620)
T 2zuy_A 261 WGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGD 340 (620)
T ss_dssp GTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSS
T ss_pred ccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCC
Confidence 123344432 111233322 123466777766542111 11110 022444455666
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecC--CCEEEEEEcC----CeEEEEECCCCeEEEEEcCC
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPR--LGRILAAAIE----NYISILDVETQVCRLKLQGH 647 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~~~~~--~~~~i~~l~fspd--~~~Llags~d----g~I~IwDl~t~~~i~~l~~h 647 (761)
|..-|+.++ .++| ..|+.+.... +........|.|+ +-.++.+..+ ....++|.++++.+......
T Consensus 341 G~dEIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 341 GKDEIIYGA-----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp SSCEEEETT-----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEee-----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 666565543 1223 2233333222 2333455566776 2334444433 25778999999999887653
Q ss_pred CC--CEEEEEEcCCC--CEEEEEe-C---C-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcC----
Q 004327 648 KN--QVHSVCWNTSG--EYLASVS-D---E-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCY---- 713 (761)
Q Consensus 648 ~~--~I~sl~~spdg--~~Lasgs-D---g-~I~IWdl~s~~~~~~i~~l~~~~~~I~sl~fspdg-~~L~sgs~d---- 713 (761)
.. ....-.|.|+. --+.+.. + . .-.+|+... ..+.... ....-..+-|..|. +.++-.+.+
T Consensus 415 ~D~Gr~~~~Didp~~pG~E~w~~~~~~~~~~~~~l~~~~G----~~i~~~~-p~~~N~~i~WdGDl~re~ld~~~~~~~~ 489 (620)
T 2zuy_A 415 TDVGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLFTSKG----EKISDKA-PSSANFAIWWDGDLVRELLDHDWDGTIG 489 (620)
T ss_dssp SCCCEEEEECCCTTSSSCEEEEECCTTSCCCEEEEEETTC----CEEESSC-CSCCSEEECCSSSSSCEEEEEEECSSCE
T ss_pred ccCCceEEEecCCCCCceEEEEecccccccCCCceECCCC----CCccCCC-CCCcceEEEECCCccHhhhCCccccccC
Confidence 33 33344455553 2333322 1 1 335777543 2332111 11112345565554 345545444
Q ss_pred -CcEEEEECCCCcEE
Q 004327 714 -ETLELWNMTENKTL 727 (761)
Q Consensus 714 -g~I~IwDl~~~~~~ 727 (761)
..|.-|+...++..
T Consensus 490 ~~~i~k~~~~~~~~~ 504 (620)
T 2zuy_A 490 RPKIEKWDAENGCLK 504 (620)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred CceEEeccCCCCcee
Confidence 46788887777544
No 402
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.80 E-value=80 Score=38.94 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEECCCCcEE
Q 004327 694 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 727 (761)
Q Consensus 694 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 727 (761)
.+.+++..++..++++.+.|++++||++.++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4456677788899999999999999999999877
No 403
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.19 E-value=1.2e+02 Score=34.43 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCEEEEEEC------------CCeEEEEEcCCCeEEEEeccC-CcceEEEEEcCCCCEEEEE
Q 004327 481 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 539 (761)
Q Consensus 481 ~V~~lafSpdg~~Lasgs~------------Dg~I~VWdl~t~~~~~~l~~h-~~~V~~v~fspdg~~Lasg 539 (761)
....|+|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4667999999987774321 125677777777776666443 3568999999999988776
No 404
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=33.50 E-value=2.2e+02 Score=24.07 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=15.1
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCC
Q 004327 653 SVCWNTSGEYLASVSDELVRVWSIGS 678 (761)
Q Consensus 653 sl~~spdg~~LasgsDg~I~IWdl~s 678 (761)
.+.+..+|.+++...++. .+|...+
T Consensus 53 ~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 466777887776544443 4776543
No 405
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=29.41 E-value=5.2e+02 Score=27.11 Aligned_cols=227 Identities=10% Similarity=0.011 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEcCCC------------e-EEEEeccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 004327 480 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF------------T-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 546 (761)
Q Consensus 480 ~~V~~lafSpdg~~Lasgs~Dg~I~VWdl~t~------------~-~~~~l~~h~~~V~~v~fspdg~~Lasgs~DG~I~ 546 (761)
..|..|+... .+.+.-..||.|+.|-.... . ....+ .-...|..|+... ...+.-..||.|+
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~--~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD--SHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS--SEEEEEETTSCEE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC--CeEEEEcCCCcEE
Confidence 4566666543 34455567888888854321 0 01111 1123566666543 3555667899999
Q ss_pred EEec--CCCC------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee------------
Q 004327 547 VWDT--ENPD------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA------------ 600 (761)
Q Consensus 547 VWDl--~t~~------------~~i~~~~~h~~~V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~------------ 600 (761)
.|-. .... .+... .....|..|+.-. ...+.-..||.|+.|-......+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 208 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGN---DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGG 208 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecC---ceEEEEcCCCCEEEeeCCCCCccCCCccccccccc
Confidence 9975 2110 01111 1234566666543 33334556899999976532110
Q ss_pred ----------eEEe-------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEcCC---CC
Q 004327 601 ----------GVFK-------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQGH---KN 649 (761)
Q Consensus 601 ----------~~~~-------~~~~i~~l~fspd~~~Llags~dg~I~IwDl~t~-----------~~i~~l~~h---~~ 649 (761)
..+. ....|..++.-. .+.++...+|.|+.|-.... .....+..- ..
T Consensus 209 ~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~ 286 (413)
T 1a12_A 209 RQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286 (413)
T ss_dssp GGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred cccccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCc
Confidence 0011 112344444433 46666778999999965421 111112111 13
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEECCCC--------CCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 004327 650 QVHSVCWNTSGEYLASVSDELVRVWSIGSG--------SKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 720 (761)
Q Consensus 650 ~I~sl~~spdg~~LasgsDg~I~IWdl~s~--------~~~~~i-~~l~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 720 (761)
.|..|+...+ ..++...||.|+.|-.... ...... ..+.. -..|..++. ...+.++...++.|+.|-
T Consensus 287 ~v~~ia~G~~-hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~--G~~hs~alt~~G~v~~wG 362 (413)
T 1a12_A 287 SWVGFSGGQH-HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC--GASVGYAVTKDGRVFAWG 362 (413)
T ss_dssp CEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred eEEEEecccc-eEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE--CcceEEEEeCCCCEEEec
Confidence 4666654322 2334444889999975431 000111 11111 124555544 345667778899999996
Q ss_pred CC
Q 004327 721 MT 722 (761)
Q Consensus 721 l~ 722 (761)
..
T Consensus 363 ~n 364 (413)
T 1a12_A 363 MG 364 (413)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 406
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.08 E-value=78 Score=27.23 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=13.7
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEC
Q 004327 653 SVCWNTSGEYLASVSDELVRVWSI 676 (761)
Q Consensus 653 sl~~spdg~~LasgsDg~I~IWdl 676 (761)
.+.+..+|.+++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456667777666544444446643
No 407
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=27.83 E-value=6.9e+02 Score=28.04 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=82.3
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEec------------------------CCCe--eEEEEecCCCEEEEEEc---
Q 004327 576 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------------------QSGA--TQMRFQPRLGRILAAAI--- 626 (761)
Q Consensus 576 g~~llasgs~Dg~I~vWDl~t~~~~~~~~~------------------------~~~i--~~l~fspd~~~Llags~--- 626 (761)
...+++.|++||.++.+|.. ++....|.. .+.+ ..+.+...-+.+++++.
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 34677789999999999877 554332210 0111 12222111133555554
Q ss_pred CCeEEEEECCC---CeEEEEEcCCC-------CCEEEEEEcCCCCEEEEEeC--------CeEEEEECCCCCCceeEEEe
Q 004327 627 ENYISILDVET---QVCRLKLQGHK-------NQVHSVCWNTSGEYLASVSD--------ELVRVWSIGSGSKGECIHEL 688 (761)
Q Consensus 627 dg~I~IwDl~t---~~~i~~l~~h~-------~~I~sl~~spdg~~LasgsD--------g~I~IWdl~s~~~~~~i~~l 688 (761)
...++..|+.+ .+.+.++.... -.-..|..-.++++++.-+. ..|+|.|+.++. .+..+
T Consensus 163 G~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~---li~~i 239 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGA---ITRKL 239 (570)
T ss_dssp CSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCC---EEEEE
T ss_pred CcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCc---eEEEE
Confidence 23688888876 56677765211 11112334456776554332 279999999884 44444
Q ss_pred ecCC-----CceEEEE-EeCCC----CEEEEEEcCCcEEEEECCCCc
Q 004327 689 SCTG-----NKFHSCV-FHPTF----PSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 689 ~~~~-----~~I~sl~-fspdg----~~L~sgs~dg~I~IwDl~~~~ 725 (761)
.... ..+..+. +..++ .+++++...|.|.-+|+....
T Consensus 240 ~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 240 EVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp EECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred ecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 3221 2233333 33333 579999999999999997643
No 408
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.80 E-value=7.6e+02 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004327 567 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 605 (761)
Q Consensus 567 V~sl~fsp~g~~llasgs~Dg~I~vWDl~t~~~~~~~~~ 605 (761)
|.++.+. ..++++-+.|+++|+||++++.++.....
T Consensus 224 Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 5555553 35666888899999999999999988776
No 409
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=24.95 E-value=29 Score=22.12 Aligned_cols=10 Identities=60% Similarity=0.796 Sum_probs=7.5
Q ss_pred HHHHHHHhcc
Q 004327 73 TKMYEDRLKK 82 (761)
Q Consensus 73 ~~~~~~~~~~ 82 (761)
-|+-|||||+
T Consensus 21 lklheerlkk 30 (32)
T 1m3w_A 21 LKLHEERLKK 30 (32)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 4778888884
No 410
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=23.30 E-value=3.4e+02 Score=22.91 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=0.0
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE-EEEEEcCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCc
Q 004327 616 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV-HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 694 (761)
Q Consensus 616 pd~~~Llags~dg~I~IwDl~t~~~i~~l~~h~~~I-~sl~~spdg~~LasgsDg~I~IWdl~s~~~~~~i~~l~~~~~~ 694 (761)
+++...+.-..||.+.+|| .+..+..-....... ..+.+..+|.+++...++.+ +|...+. ....
T Consensus 18 ~~~~~~l~~~~dGnlvl~~--~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~~~~~-~W~S~t~-----------~~~g 83 (110)
T 3a0c_A 18 VGPSYRLIMQGDCNFVLYD--SGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRV-IWQTKTN-----------GKED 83 (110)
T ss_dssp ETTTEEEEECTTSCEEEEE--TTEEEEECCCTTSCSSCEEEECTTSCEEEECTTCCE-EEECCCC-----------CSSS
T ss_pred ECCCEEEEEcCCCcEEEEE--CCEEEEECCCCCCCCcEEEEEeCCCCEEEECCCCcE-EEecCCC-----------CCCC
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEECCCCc
Q 004327 695 FHSCVFHPTFPSLLVIGCYETLELWNMTENK 725 (761)
Q Consensus 695 I~sl~fspdg~~L~sgs~dg~I~IwDl~~~~ 725 (761)
...+.+.++|.+++..+ .+|...+..
T Consensus 84 ~~~l~l~~dGnlvl~~~-----~~W~S~~~~ 109 (110)
T 3a0c_A 84 HYVLVLQQDRNVVIYGP-----VVWATGSGP 109 (110)
T ss_dssp CCEEEECTTSCEEEECS-----EEEECSCCC
T ss_pred CEEEEEeCCccEEEECC-----CEecCCCcC
No 411
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=22.61 E-value=8.5e+02 Score=27.29 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=80.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEec-------------------cCC----c--ceEEEEEcCCCCEEEEEeC---C
Q 004327 491 GKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHT----Q--WITDVRFSPSLSRLATSSA---D 542 (761)
Q Consensus 491 g~~Lasgs~Dg~I~VWdl~t~~~~~~l~-------------------~h~----~--~V~~v~fspdg~~Lasgs~---D 542 (761)
...|++|+.||.++.+|.. ++++..+- .|. + .+..+.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3578888888988888876 54443321 021 1 1233333221123444432 2
Q ss_pred CeEEEEecCCCCce--eEEeec-------CCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEEecCC
Q 004327 543 RTVRVWDTENPDYS--LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQS 607 (761)
Q Consensus 543 G~I~VWDl~t~~~~--i~~~~~-------h~~~V~sl~fsp~g~~llasgs~------Dg~I~vWDl~t~~~~~~~~~~~ 607 (761)
..++..|+.++..+ +..+.. +.-.--.|.-..+++.+++.++. ...|+|.|+.++..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 35666776653321 222221 11111123333455555555542 3579999999999998886432
Q ss_pred ------CeeEEE-EecCC----CEEEEEEcCCeEEEEECCCC
Q 004327 608 ------GATQMR-FQPRL----GRILAAAIENYISILDVETQ 638 (761)
Q Consensus 608 ------~i~~l~-fspd~----~~Llags~dg~I~IwDl~t~ 638 (761)
.+..+. +..++ ..++++...|.|.-||+...
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 233333 33332 46888999999999999764
No 412
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=20.53 E-value=4.1e+02 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=14.4
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECC
Q 004327 653 SVCWNTSGEYLASVSDELVRVWSIG 677 (761)
Q Consensus 653 sl~~spdg~~LasgsDg~I~IWdl~ 677 (761)
.+.+..+|.+++...++. .+|...
T Consensus 64 ~l~l~~dGNLVl~d~~~~-~lW~S~ 87 (119)
T 1b2p_A 64 RAVLQPDGVLVVITNENV-TVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECS
T ss_pred EEEEccCCEEEEEeCCCc-EEEcCC
Confidence 466677777766544443 467654
Done!