Query 004328
Match_columns 761
No_of_seqs 351 out of 1553
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09496 trkA potassium transp 100.0 3.3E-34 7.2E-39 326.1 37.7 425 199-755 2-439 (453)
2 PF06241 DUF1012: Protein of u 100.0 3E-35 6.4E-40 275.9 20.7 205 284-497 1-205 (206)
3 KOG1420 Ca2+-activated K+ chan 100.0 9.4E-27 2E-31 250.1 28.2 583 126-754 287-1066(1103)
4 PRK10537 voltage-gated potassi 100.0 6.1E-27 1.3E-31 258.0 25.7 229 108-370 145-382 (393)
5 COG0569 TrkA K+ transport syst 99.8 7.6E-20 1.7E-24 188.2 18.5 206 199-436 2-213 (225)
6 PRK09496 trkA potassium transp 99.8 5.5E-19 1.2E-23 201.3 22.7 210 196-436 230-441 (453)
7 KOG3193 K+ channel subunit [In 99.7 3.6E-15 7.8E-20 160.7 21.9 294 122-434 212-546 (1087)
8 PRK10669 putative cation:proto 99.6 2E-14 4.4E-19 167.8 21.9 140 196-365 416-555 (558)
9 PF06241 DUF1012: Protein of u 99.6 1.2E-14 2.5E-19 137.6 14.3 153 589-758 3-155 (206)
10 COG0569 TrkA K+ transport syst 99.5 1.8E-13 3.9E-18 141.0 16.6 210 501-755 2-212 (225)
11 PRK03659 glutathione-regulated 99.5 8.9E-13 1.9E-17 154.8 22.2 132 196-357 399-530 (601)
12 PRK03562 glutathione-regulated 99.5 4.2E-12 9E-17 149.4 22.5 132 196-357 399-530 (621)
13 PF02254 TrkA_N: TrkA-N domain 99.5 5.5E-13 1.2E-17 122.8 11.9 116 200-345 1-116 (116)
14 PRK10537 voltage-gated potassi 99.3 6.8E-12 1.5E-16 139.0 12.8 144 498-682 239-384 (393)
15 PF02254 TrkA_N: TrkA-N domain 99.1 2.3E-10 5E-15 105.3 9.3 111 502-650 1-111 (116)
16 PRK10669 putative cation:proto 99.0 1.4E-09 3E-14 127.4 10.5 139 498-675 416-554 (558)
17 PRK03659 glutathione-regulated 98.8 1.6E-08 3.5E-13 119.0 12.2 124 497-660 398-521 (601)
18 PRK03562 glutathione-regulated 98.8 2.8E-08 6.1E-13 117.3 12.0 128 498-665 399-527 (621)
19 COG0490 Putative regulatory, l 98.6 9.2E-08 2E-12 90.8 7.8 64 375-438 88-152 (162)
20 COG1226 Kch Kef-type K+ transp 98.5 9.5E-07 2.1E-11 88.4 13.4 142 194-365 18-160 (212)
21 PF07885 Ion_trans_2: Ion chan 98.4 9.1E-07 2E-11 75.7 7.4 72 109-180 5-78 (79)
22 KOG3713 Voltage-gated K+ chann 98.2 2.7E-06 5.9E-11 93.8 8.8 93 88-182 334-433 (477)
23 PF02080 TrkA_C: TrkA-C domain 98.0 2.9E-06 6.2E-11 70.8 2.8 60 376-436 3-63 (71)
24 KOG3193 K+ channel subunit [In 98.0 0.0001 2.2E-09 81.1 14.3 231 496-752 284-544 (1087)
25 KOG1419 Voltage-gated K+ chann 97.9 2.2E-05 4.8E-10 87.0 7.5 77 107-185 240-328 (654)
26 PF03493 BK_channel_a: Calcium 97.8 4.6E-05 1E-09 68.4 6.7 71 336-406 7-101 (101)
27 KOG1545 Voltage-gated shaker-l 97.7 1.1E-05 2.3E-10 85.0 1.5 80 100-181 361-448 (507)
28 KOG1420 Ca2+-activated K+ chan 97.7 3.5E-05 7.7E-10 85.1 5.5 229 497-754 355-619 (1103)
29 PLN03192 Voltage-dependent pot 97.6 0.00023 5E-09 87.5 11.6 48 131-180 254-304 (823)
30 KOG4404 Tandem pore domain K+ 97.6 0.00025 5.5E-09 74.4 8.7 79 99-181 160-249 (350)
31 COG3273 Uncharacterized conser 97.6 8E-05 1.7E-09 72.0 4.5 61 376-436 122-183 (204)
32 COG1226 Kch Kef-type K+ transp 97.4 0.0012 2.7E-08 65.7 10.7 137 497-672 19-156 (212)
33 COG3400 Uncharacterized protei 97.3 0.0022 4.8E-08 68.0 11.8 204 198-436 2-212 (471)
34 COG0490 Putative regulatory, l 97.2 0.00039 8.4E-09 66.5 5.0 64 687-758 89-152 (162)
35 PF01007 IRK: Inward rectifier 96.9 0.0029 6.2E-08 69.1 8.1 115 87-206 25-161 (336)
36 KOG0498 K+-channel ERG and rel 96.7 0.0069 1.5E-07 71.7 10.1 52 128-181 295-349 (727)
37 TIGR03802 Asp_Ala_antiprt aspa 95.7 0.014 3E-07 68.5 5.6 62 375-437 220-282 (562)
38 KOG4390 Voltage-gated A-type K 95.6 0.0027 6E-08 67.7 -0.4 94 82-181 311-411 (632)
39 PRK05326 potassium/proton anti 95.5 0.017 3.6E-07 68.1 5.5 59 376-436 418-476 (562)
40 KOG1418 Tandem pore domain K+ 95.5 0.027 5.8E-07 63.3 7.0 63 124-186 112-175 (433)
41 PF02080 TrkA_C: TrkA-C domain 95.3 0.018 3.9E-07 47.7 3.5 59 687-754 3-61 (71)
42 COG3400 Uncharacterized protei 95.1 1.1 2.4E-05 48.2 16.6 207 500-754 2-210 (471)
43 PRK03818 putative transporter; 94.9 0.025 5.5E-07 66.1 4.6 63 375-438 291-354 (552)
44 KOG3684 Ca2+-activated K+ chan 94.8 0.15 3.1E-06 56.6 9.6 144 32-180 154-341 (489)
45 KOG4404 Tandem pore domain K+ 94.8 0.052 1.1E-06 57.5 5.9 43 123-165 76-119 (350)
46 PRK03818 putative transporter; 94.7 0.054 1.2E-06 63.4 6.7 61 375-437 207-268 (552)
47 KOG0499 Cyclic nucleotide-gate 94.6 0.077 1.7E-06 60.1 7.1 59 123-181 399-457 (815)
48 TIGR03802 Asp_Ala_antiprt aspa 94.6 0.036 7.9E-07 65.0 4.9 63 375-438 304-371 (562)
49 PRK04972 putative transporter; 94.6 0.034 7.4E-07 65.1 4.5 63 375-438 304-366 (558)
50 KOG0501 K+-channel KCNQ [Inorg 94.3 0.31 6.7E-06 55.2 10.9 54 128-181 424-478 (971)
51 PRK04972 putative transporter; 93.2 0.15 3.2E-06 59.9 6.4 51 385-436 228-279 (558)
52 COG3263 NhaP-type Na+/H+ and K 91.7 0.21 4.6E-06 55.1 4.7 55 380-436 420-474 (574)
53 COG3273 Uncharacterized conser 91.6 0.3 6.5E-06 47.9 5.1 51 701-755 132-182 (204)
54 PRK06719 precorrin-2 dehydroge 91.5 0.61 1.3E-05 45.4 7.2 68 196-293 12-79 (157)
55 PRK06719 precorrin-2 dehydroge 91.2 0.59 1.3E-05 45.5 6.8 34 498-534 12-45 (157)
56 KOG0500 Cyclic nucleotide-gate 90.5 1 2.2E-05 50.5 8.5 50 130-181 186-237 (536)
57 KOG3827 Inward rectifier K+ ch 88.8 2.2 4.7E-05 46.7 9.2 76 126-206 111-189 (400)
58 PF00520 Ion_trans: Ion transp 87.7 2.4 5.2E-05 41.6 8.4 48 126-175 144-200 (200)
59 TIGR01470 cysG_Nterm siroheme 85.9 3.6 7.9E-05 41.9 8.7 69 197-292 9-77 (205)
60 PRK06718 precorrin-2 dehydroge 85.2 2.2 4.7E-05 43.4 6.6 72 196-294 9-80 (202)
61 COG1748 LYS9 Saccharopine dehy 84.3 13 0.00029 41.5 12.7 129 198-367 2-134 (389)
62 PF03435 Saccharop_dh: Sacchar 83.3 4.9 0.00011 44.9 9.2 76 200-292 1-76 (386)
63 cd05211 NAD_bind_Glu_Leu_Phe_V 81.9 8.7 0.00019 39.5 9.5 36 196-244 22-57 (217)
64 TIGR01470 cysG_Nterm siroheme 81.7 7 0.00015 39.8 8.7 56 499-565 9-64 (205)
65 KOG1053 Glutamate-gated NMDA-t 80.0 7 0.00015 47.0 8.8 80 101-180 568-663 (1258)
66 PF00106 adh_short: short chai 80.0 7.1 0.00015 37.4 7.8 68 198-280 1-71 (167)
67 COG0300 DltE Short-chain dehyd 79.8 7.6 0.00017 41.1 8.4 71 196-281 5-76 (265)
68 PF00060 Lig_chan: Ligand-gate 79.5 4.3 9.3E-05 38.3 6.0 56 126-181 43-98 (148)
69 PF13460 NAD_binding_10: NADH( 78.6 9 0.00019 37.4 8.2 69 200-293 1-70 (183)
70 PF03493 BK_channel_a: Calcium 77.7 17 0.00037 32.6 8.8 71 650-723 10-101 (101)
71 PF00670 AdoHcyase_NAD: S-aden 77.1 8 0.00017 37.8 7.0 26 196-221 22-47 (162)
72 cd05213 NAD_bind_Glutamyl_tRNA 76.9 25 0.00055 38.1 11.7 119 196-348 177-296 (311)
73 COG2985 Predicted permease [Ge 76.9 2.2 4.8E-05 48.0 3.5 57 381-438 210-267 (544)
74 KOG1418 Tandem pore domain K+ 76.2 0.45 9.7E-06 53.3 -2.2 61 108-172 225-296 (433)
75 PRK06194 hypothetical protein; 73.7 15 0.00033 38.7 8.9 80 197-292 6-92 (287)
76 PF08659 KR: KR domain; Inter 73.6 12 0.00025 37.1 7.5 68 199-280 2-72 (181)
77 PRK08265 short chain dehydroge 73.3 16 0.00035 38.1 8.9 64 197-279 6-70 (261)
78 PRK09186 flagellin modificatio 72.9 15 0.00033 37.9 8.5 69 197-279 4-73 (256)
79 PRK06718 precorrin-2 dehydroge 72.6 9.4 0.0002 38.8 6.6 38 498-538 9-46 (202)
80 PF03807 F420_oxidored: NADP o 72.6 16 0.00035 31.7 7.4 45 200-254 2-46 (96)
81 PRK07666 fabG 3-ketoacyl-(acyl 72.5 19 0.00041 36.7 9.1 80 196-291 6-92 (239)
82 PRK06914 short chain dehydroge 72.2 18 0.0004 37.9 9.1 81 197-291 3-89 (280)
83 cd01075 NAD_bind_Leu_Phe_Val_D 71.5 68 0.0015 32.4 12.5 43 196-252 27-69 (200)
84 PRK12935 acetoacetyl-CoA reduc 71.0 22 0.00047 36.5 9.1 81 196-291 5-92 (247)
85 PRK08416 7-alpha-hydroxysteroi 70.7 19 0.00042 37.4 8.8 69 197-279 8-77 (260)
86 PRK08251 short chain dehydroge 70.6 20 0.00044 36.7 8.8 80 198-291 3-89 (248)
87 PRK07097 gluconate 5-dehydroge 70.5 18 0.0004 37.7 8.6 68 197-280 10-78 (265)
88 PF01408 GFO_IDH_MocA: Oxidore 70.5 69 0.0015 28.7 11.4 71 199-293 2-72 (120)
89 CHL00194 ycf39 Ycf39; Provisio 70.4 26 0.00055 37.9 9.9 59 501-572 2-61 (317)
90 PLN02819 lysine-ketoglutarate 69.9 26 0.00056 44.2 10.7 88 197-293 569-658 (1042)
91 PRK07024 short chain dehydroge 69.8 20 0.00043 37.2 8.6 65 198-279 3-68 (257)
92 PRK07454 short chain dehydroge 69.5 22 0.00047 36.4 8.7 66 198-279 7-73 (241)
93 PRK07063 short chain dehydroge 69.2 22 0.00048 36.8 8.8 69 197-279 7-76 (260)
94 PRK06924 short chain dehydroge 69.0 18 0.00038 37.3 7.9 64 198-279 2-66 (251)
95 PRK12939 short chain dehydroge 68.7 25 0.00055 35.9 9.0 80 196-291 6-92 (250)
96 PRK07523 gluconate 5-dehydroge 67.4 25 0.00054 36.3 8.7 68 196-279 9-77 (255)
97 PRK06172 short chain dehydroge 67.3 24 0.00053 36.3 8.6 67 197-279 7-74 (253)
98 PRK12475 thiamine/molybdopteri 67.3 28 0.00061 38.3 9.3 26 196-221 23-48 (338)
99 PRK07109 short chain dehydroge 67.3 23 0.00051 38.7 8.8 68 196-279 7-75 (334)
100 PRK08643 acetoin reductase; Va 67.2 25 0.00055 36.3 8.7 78 198-291 3-87 (256)
101 PF01488 Shikimate_DH: Shikima 67.1 23 0.00049 33.3 7.5 121 196-348 11-132 (135)
102 PLN02780 ketoreductase/ oxidor 67.1 60 0.0013 35.3 11.9 61 197-271 53-114 (320)
103 PRK09291 short chain dehydroge 66.9 32 0.0007 35.4 9.4 78 198-291 3-81 (257)
104 PRK08063 enoyl-(acyl carrier p 66.9 25 0.00055 36.0 8.6 80 197-291 4-90 (250)
105 PRK06949 short chain dehydroge 66.5 27 0.0006 35.9 8.8 68 196-279 8-76 (258)
106 PF05368 NmrA: NmrA-like famil 66.5 28 0.0006 35.6 8.8 72 200-293 1-74 (233)
107 PRK12429 3-hydroxybutyrate deh 66.4 26 0.00057 36.0 8.6 79 197-291 4-89 (258)
108 PRK06139 short chain dehydroge 66.3 22 0.00049 38.8 8.4 68 196-279 6-74 (330)
109 PRK12746 short chain dehydroge 66.3 30 0.00065 35.6 9.1 68 197-279 6-74 (254)
110 PRK07062 short chain dehydroge 65.6 27 0.00059 36.3 8.6 69 197-279 8-77 (265)
111 PRK05876 short chain dehydroge 65.5 30 0.00066 36.5 9.0 67 197-279 6-73 (275)
112 PRK05866 short chain dehydroge 65.4 25 0.00054 37.6 8.4 79 197-291 40-125 (293)
113 cd01078 NAD_bind_H4MPT_DH NADP 65.3 79 0.0017 31.4 11.6 79 196-293 27-106 (194)
114 PRK06940 short chain dehydroge 65.2 24 0.00051 37.3 8.1 66 197-279 2-67 (275)
115 PRK05854 short chain dehydroge 65.0 25 0.00054 38.0 8.4 70 196-279 13-83 (313)
116 PRK07231 fabG 3-ketoacyl-(acyl 64.6 32 0.00069 35.2 8.8 78 197-291 5-89 (251)
117 PRK05562 precorrin-2 dehydroge 64.0 39 0.00085 34.9 9.0 69 197-292 25-93 (223)
118 PRK06947 glucose-1-dehydrogena 64.0 32 0.00069 35.3 8.7 80 197-291 2-88 (248)
119 PRK06124 gluconate 5-dehydroge 63.9 31 0.00067 35.6 8.6 67 197-279 11-78 (256)
120 PRK12826 3-ketoacyl-(acyl-carr 63.7 35 0.00076 34.8 8.9 79 197-291 6-91 (251)
121 PRK06500 short chain dehydroge 63.5 32 0.0007 35.1 8.6 63 197-278 6-69 (249)
122 PRK06200 2,3-dihydroxy-2,3-dih 63.4 29 0.00064 36.0 8.4 64 197-279 6-70 (263)
123 PRK07890 short chain dehydroge 63.3 31 0.00068 35.5 8.5 79 197-291 5-90 (258)
124 CHL00194 ycf39 Ycf39; Provisio 63.2 26 0.00057 37.8 8.2 71 199-292 2-73 (317)
125 PRK07326 short chain dehydroge 63.1 33 0.00071 34.8 8.5 78 197-291 6-90 (237)
126 PRK08267 short chain dehydroge 63.1 28 0.00061 36.0 8.2 64 198-279 2-66 (260)
127 PRK06138 short chain dehydroge 63.1 36 0.00077 34.9 8.8 79 197-292 5-90 (252)
128 PRK07067 sorbitol dehydrogenas 63.0 34 0.00073 35.4 8.7 64 197-279 6-70 (257)
129 PRK09242 tropinone reductase; 62.9 36 0.00078 35.2 8.9 68 197-278 9-77 (257)
130 PRK05565 fabG 3-ketoacyl-(acyl 62.8 36 0.00079 34.6 8.8 80 197-291 5-91 (247)
131 PRK07576 short chain dehydroge 62.8 33 0.00071 35.9 8.6 68 196-279 8-76 (264)
132 cd01076 NAD_bind_1_Glu_DH NAD( 62.7 49 0.0011 34.2 9.6 26 196-221 30-55 (227)
133 PRK08213 gluconate 5-dehydroge 62.6 35 0.00076 35.3 8.7 79 197-291 12-97 (259)
134 PRK05557 fabG 3-ketoacyl-(acyl 62.6 37 0.0008 34.5 8.8 80 197-291 5-91 (248)
135 PRK08339 short chain dehydroge 62.5 31 0.00067 36.1 8.4 68 197-279 8-76 (263)
136 PRK12829 short chain dehydroge 62.1 34 0.00074 35.3 8.6 79 196-292 10-95 (264)
137 PRK09135 pteridine reductase; 61.8 42 0.00091 34.2 9.1 81 197-291 6-93 (249)
138 PRK12937 short chain dehydroge 61.6 38 0.00083 34.5 8.7 80 197-291 5-91 (245)
139 PRK05867 short chain dehydroge 61.5 37 0.0008 35.0 8.7 67 197-279 9-76 (253)
140 KOG4440 NMDA selective glutama 61.3 16 0.00035 42.3 6.0 55 124-178 610-665 (993)
141 PRK10538 malonic semialdehyde 61.2 33 0.00071 35.3 8.2 74 199-291 2-82 (248)
142 PRK06101 short chain dehydroge 61.2 27 0.00059 35.8 7.5 61 199-279 3-64 (240)
143 PRK05326 potassium/proton anti 61.1 11 0.00024 44.6 5.0 48 701-755 428-475 (562)
144 PRK07831 short chain dehydroge 60.9 40 0.00087 34.9 8.9 70 196-279 16-87 (262)
145 PRK05650 short chain dehydroge 60.8 33 0.00072 35.8 8.2 65 199-279 2-67 (270)
146 PLN03223 Polycystin cation cha 60.3 51 0.0011 42.1 10.3 58 124-182 1358-1425(1634)
147 PRK13394 3-hydroxybutyrate deh 60.0 44 0.00096 34.4 9.0 67 197-279 7-74 (262)
148 PRK12938 acetyacetyl-CoA reduc 59.7 45 0.00099 34.0 8.9 67 198-279 4-71 (246)
149 PRK05653 fabG 3-ketoacyl-(acyl 59.6 40 0.00087 34.2 8.4 79 197-291 5-90 (246)
150 TIGR03025 EPS_sugtrans exopoly 59.3 1.8E+02 0.0038 33.2 14.4 24 197-220 125-148 (445)
151 PF07991 IlvN: Acetohydroxy ac 59.0 19 0.00042 35.2 5.4 67 196-292 3-69 (165)
152 PRK07774 short chain dehydroge 59.0 43 0.00094 34.2 8.6 80 196-291 5-91 (250)
153 PRK07806 short chain dehydroge 59.0 49 0.0011 33.8 9.0 68 197-279 6-74 (248)
154 PF13460 NAD_binding_10: NADH( 59.0 13 0.00028 36.3 4.4 56 502-572 1-57 (183)
155 PRK07478 short chain dehydroge 58.9 42 0.00091 34.6 8.5 67 197-279 6-73 (254)
156 TIGR03023 WcaJ_sugtrans Undeca 58.8 1.2E+02 0.0027 34.5 13.0 24 197-220 128-151 (451)
157 PRK06482 short chain dehydroge 58.7 39 0.00084 35.4 8.3 76 198-292 3-85 (276)
158 PLN02214 cinnamoyl-CoA reducta 58.4 1.2E+02 0.0026 33.2 12.3 110 499-627 10-120 (342)
159 PRK08642 fabG 3-ketoacyl-(acyl 58.1 49 0.0011 33.9 8.8 65 197-279 5-70 (253)
160 TIGR02415 23BDH acetoin reduct 57.2 45 0.00097 34.2 8.4 65 199-279 2-67 (254)
161 PRK06197 short chain dehydroge 56.8 46 0.001 35.6 8.7 70 196-279 15-85 (306)
162 PRK09730 putative NAD(P)-bindi 56.6 46 0.001 33.8 8.3 66 199-279 3-69 (247)
163 COG0373 HemA Glutamyl-tRNA red 56.1 1.3E+02 0.0028 34.1 11.9 119 196-347 177-296 (414)
164 PRK07102 short chain dehydroge 55.9 45 0.00098 34.1 8.1 78 198-290 2-83 (243)
165 TIGR03466 HpnA hopanoid-associ 55.9 95 0.0021 33.1 11.0 59 501-572 2-61 (328)
166 PLN03209 translocon at the inn 55.8 52 0.0011 38.9 9.1 82 196-292 79-168 (576)
167 PRK08277 D-mannonate oxidoredu 55.7 51 0.0011 34.6 8.6 79 197-291 10-95 (278)
168 PRK06181 short chain dehydroge 55.6 47 0.001 34.4 8.3 66 198-279 2-68 (263)
169 cd01065 NAD_bind_Shikimate_DH 55.5 46 0.001 31.5 7.5 46 196-254 18-63 (155)
170 PRK08589 short chain dehydroge 55.4 47 0.001 34.8 8.3 65 197-278 6-71 (272)
171 PRK08936 glucose-1-dehydrogena 55.3 57 0.0012 33.8 8.8 68 197-279 7-75 (261)
172 TIGR03206 benzo_BadH 2-hydroxy 55.2 56 0.0012 33.4 8.7 79 197-291 3-88 (250)
173 PRK08340 glucose-1-dehydrogena 55.2 45 0.00098 34.6 8.0 64 199-279 2-66 (259)
174 TIGR01500 sepiapter_red sepiap 55.2 45 0.00098 34.5 8.0 71 199-279 2-73 (256)
175 PRK12743 oxidoreductase; Provi 55.2 58 0.0012 33.7 8.8 79 198-291 3-88 (256)
176 TIGR03325 BphB_TodD cis-2,3-di 55.0 49 0.0011 34.3 8.3 64 197-279 5-69 (262)
177 PRK07814 short chain dehydroge 54.1 58 0.0012 33.9 8.7 67 197-279 10-77 (263)
178 PRK08085 gluconate 5-dehydroge 54.1 62 0.0014 33.3 8.9 67 197-279 9-76 (254)
179 PRK07904 short chain dehydroge 53.8 45 0.00098 34.7 7.7 68 197-278 8-77 (253)
180 PRK13302 putative L-aspartate 53.6 1.2E+02 0.0026 32.2 10.9 71 197-292 6-76 (271)
181 TIGR01832 kduD 2-deoxy-D-gluco 53.3 61 0.0013 33.1 8.6 63 197-278 5-69 (248)
182 PLN02896 cinnamyl-alcohol dehy 53.3 75 0.0016 34.8 9.8 80 196-293 9-89 (353)
183 PRK08219 short chain dehydroge 53.1 63 0.0014 32.3 8.6 74 198-292 4-80 (227)
184 PRK05717 oxidoreductase; Valid 53.1 62 0.0013 33.4 8.6 65 196-279 9-74 (255)
185 PRK07775 short chain dehydroge 53.0 62 0.0013 34.0 8.7 80 196-291 9-95 (274)
186 PRK09134 short chain dehydroge 53.0 64 0.0014 33.4 8.7 68 197-279 9-77 (258)
187 PRK08862 short chain dehydroge 53.0 59 0.0013 33.3 8.3 42 197-252 5-47 (227)
188 PRK08267 short chain dehydroge 52.9 25 0.00054 36.5 5.6 64 500-572 2-66 (260)
189 PRK06180 short chain dehydroge 52.8 52 0.0011 34.5 8.2 64 197-279 4-68 (277)
190 PRK06114 short chain dehydroge 52.7 65 0.0014 33.2 8.7 68 197-279 8-76 (254)
191 PRK07825 short chain dehydroge 52.3 57 0.0012 34.1 8.3 62 197-278 5-67 (273)
192 PRK12825 fabG 3-ketoacyl-(acyl 52.1 76 0.0016 32.1 9.0 80 198-292 7-93 (249)
193 PLN00141 Tic62-NAD(P)-related 52.0 56 0.0012 33.8 8.1 75 197-291 17-93 (251)
194 PRK07035 short chain dehydroge 51.9 68 0.0015 32.9 8.7 66 197-278 8-74 (252)
195 PRK06198 short chain dehydroge 51.7 73 0.0016 32.8 8.9 81 196-291 5-92 (260)
196 PRK06437 hypothetical protein; 51.6 32 0.0007 28.3 4.9 44 386-432 19-63 (67)
197 PRK12745 3-ketoacyl-(acyl-carr 51.5 66 0.0014 33.0 8.5 79 198-291 3-88 (256)
198 PRK04017 hypothetical protein; 51.5 87 0.0019 29.6 8.2 68 208-294 8-75 (132)
199 PRK08309 short chain dehydroge 51.1 70 0.0015 31.6 8.2 64 199-279 2-65 (177)
200 PRK07792 fabG 3-ketoacyl-(acyl 50.9 70 0.0015 34.3 8.9 68 196-279 11-80 (306)
201 TIGR01831 fabG_rel 3-oxoacyl-( 50.8 56 0.0012 33.2 7.8 65 200-279 1-66 (239)
202 COG1648 CysG Siroheme synthase 50.7 66 0.0014 32.9 8.0 44 197-253 12-55 (210)
203 PRK00045 hemA glutamyl-tRNA re 50.7 1.5E+02 0.0033 33.7 11.8 120 196-346 181-301 (423)
204 PF05368 NmrA: NmrA-like famil 50.6 36 0.00077 34.8 6.3 60 502-572 1-61 (233)
205 PRK08364 sulfur carrier protei 50.5 39 0.00085 27.9 5.3 44 386-432 22-66 (70)
206 PRK07453 protochlorophyllide o 50.5 72 0.0016 34.4 8.9 67 197-279 6-73 (322)
207 TIGR01289 LPOR light-dependent 50.3 72 0.0016 34.4 8.9 67 197-279 3-71 (314)
208 PRK12384 sorbitol-6-phosphate 50.3 70 0.0015 32.9 8.5 68 198-279 3-71 (259)
209 TIGR01963 PHB_DH 3-hydroxybuty 50.1 65 0.0014 32.9 8.2 64 199-278 3-67 (255)
210 PRK12827 short chain dehydroge 50.1 73 0.0016 32.3 8.6 80 197-291 6-95 (249)
211 PRK05875 short chain dehydroge 50.0 87 0.0019 32.7 9.3 81 197-291 7-94 (276)
212 PLN00141 Tic62-NAD(P)-related 50.0 1.4E+02 0.0031 30.7 10.8 64 498-572 16-81 (251)
213 KOG1014 17 beta-hydroxysteroid 50.0 1.9E+02 0.0042 31.3 11.5 44 197-254 49-93 (312)
214 PRK12481 2-deoxy-D-gluconate 3 49.9 68 0.0015 33.1 8.4 64 197-279 8-73 (251)
215 PF13241 NAD_binding_7: Putati 49.9 26 0.00056 31.3 4.4 34 498-534 6-39 (103)
216 PRK06182 short chain dehydroge 49.9 53 0.0011 34.3 7.6 73 197-291 3-82 (273)
217 PRK08217 fabG 3-ketoacyl-(acyl 49.4 70 0.0015 32.6 8.3 66 197-278 5-71 (253)
218 PRK01581 speE spermidine synth 49.3 1.2E+02 0.0025 33.9 10.1 63 498-565 150-218 (374)
219 PRK07677 short chain dehydroge 49.2 64 0.0014 33.2 8.0 65 199-279 3-68 (252)
220 PRK08226 short chain dehydroge 49.0 80 0.0017 32.6 8.7 67 196-279 5-72 (263)
221 PRK05872 short chain dehydroge 49.0 74 0.0016 33.9 8.7 67 196-279 8-75 (296)
222 PRK12936 3-ketoacyl-(acyl-carr 48.7 92 0.002 31.5 9.0 76 197-291 6-88 (245)
223 PLN02650 dihydroflavonol-4-red 48.7 63 0.0014 35.3 8.2 81 197-292 5-86 (351)
224 PRK06924 short chain dehydroge 48.6 46 0.001 34.1 6.8 64 500-572 2-66 (251)
225 KOG1210 Predicted 3-ketosphing 48.4 1.4E+02 0.003 32.5 10.1 64 197-274 33-97 (331)
226 PRK05993 short chain dehydroge 47.9 57 0.0012 34.3 7.5 61 197-279 4-65 (277)
227 PRK05599 hypothetical protein; 47.8 66 0.0014 33.2 7.8 65 199-279 2-67 (246)
228 PLN02583 cinnamoyl-CoA reducta 47.7 1E+02 0.0022 32.9 9.5 78 197-290 6-85 (297)
229 PRK08628 short chain dehydroge 47.7 77 0.0017 32.6 8.3 78 197-291 7-91 (258)
230 PF02719 Polysacc_synt_2: Poly 47.6 36 0.00079 36.6 5.8 76 200-288 1-82 (293)
231 PRK05884 short chain dehydroge 47.6 58 0.0013 33.1 7.3 60 199-279 2-62 (223)
232 PRK09072 short chain dehydroge 47.3 84 0.0018 32.5 8.6 78 197-291 5-88 (263)
233 PRK06125 short chain dehydroge 47.3 82 0.0018 32.5 8.5 78 197-289 7-87 (259)
234 PRK12824 acetoacetyl-CoA reduc 46.9 1E+02 0.0022 31.3 9.0 66 198-279 3-70 (245)
235 PRK06123 short chain dehydroge 46.9 86 0.0019 31.9 8.5 67 198-279 3-70 (248)
236 KOG3599 Ca2+-modulated nonsele 46.9 1E+02 0.0022 38.0 10.1 100 87-188 580-688 (798)
237 PLN02214 cinnamoyl-CoA reducta 46.8 1.1E+02 0.0023 33.6 9.6 80 197-293 10-91 (342)
238 PRK07806 short chain dehydroge 46.5 50 0.0011 33.8 6.6 68 499-572 6-74 (248)
239 KOG1201 Hydroxysteroid 17-beta 46.5 2.1E+02 0.0045 30.9 11.1 67 196-279 37-104 (300)
240 PLN00203 glutamyl-tRNA reducta 46.3 2.3E+02 0.0049 33.2 12.5 125 197-347 266-391 (519)
241 cd01483 E1_enzyme_family Super 46.3 1E+02 0.0022 28.9 8.2 23 199-221 1-23 (143)
242 PRK07791 short chain dehydroge 46.2 91 0.002 33.1 8.8 66 197-278 6-81 (286)
243 PF13241 NAD_binding_7: Putati 45.8 27 0.00059 31.1 3.9 35 196-243 6-40 (103)
244 TIGR02685 pter_reduc_Leis pter 45.7 73 0.0016 33.2 7.9 64 199-276 3-67 (267)
245 PRK07985 oxidoreductase; Provi 45.2 90 0.002 33.3 8.6 67 197-279 49-118 (294)
246 PRK12859 3-ketoacyl-(acyl-carr 45.0 1.1E+02 0.0024 31.6 9.0 26 196-221 5-33 (256)
247 PRK08017 oxidoreductase; Provi 44.6 64 0.0014 33.1 7.1 59 198-278 3-62 (256)
248 PRK06701 short chain dehydroge 44.5 1E+02 0.0022 32.8 8.8 67 197-279 46-114 (290)
249 PRK07424 bifunctional sterol d 44.4 2E+02 0.0043 32.6 11.4 75 197-291 178-253 (406)
250 PLN02253 xanthoxin dehydrogena 44.4 94 0.002 32.5 8.5 78 197-291 18-102 (280)
251 PRK06484 short chain dehydroge 44.3 76 0.0016 36.8 8.4 64 197-279 269-333 (520)
252 COG1086 Predicted nucleoside-d 44.2 88 0.0019 36.6 8.4 71 197-280 250-321 (588)
253 PLN02662 cinnamyl-alcohol dehy 44.2 73 0.0016 34.1 7.7 77 198-292 5-85 (322)
254 PRK12744 short chain dehydroge 43.9 99 0.0022 31.9 8.5 80 197-291 8-97 (257)
255 TIGR02356 adenyl_thiF thiazole 43.9 1.3E+02 0.0028 30.3 9.0 26 196-221 20-45 (202)
256 PRK05482 potassium-transportin 43.8 37 0.0008 39.7 5.5 63 102-164 283-368 (559)
257 PLN02989 cinnamyl-alcohol dehy 43.8 1.1E+02 0.0023 32.9 9.0 81 197-292 5-86 (325)
258 PRK07069 short chain dehydroge 43.7 96 0.0021 31.6 8.3 66 200-279 2-69 (251)
259 PRK08594 enoyl-(acyl carrier p 43.6 98 0.0021 32.2 8.4 65 197-278 7-76 (257)
260 PRK08263 short chain dehydroge 43.5 98 0.0021 32.4 8.4 75 198-291 4-85 (275)
261 PRK06113 7-alpha-hydroxysteroi 43.5 1E+02 0.0023 31.6 8.6 67 197-279 11-78 (255)
262 PRK06179 short chain dehydroge 43.3 52 0.0011 34.3 6.3 71 197-291 4-81 (270)
263 PRK12742 oxidoreductase; Provi 43.1 1E+02 0.0022 31.2 8.3 63 197-279 6-69 (237)
264 KOG1208 Dehydrogenases with di 43.0 1E+02 0.0022 33.5 8.6 71 196-280 33-105 (314)
265 PRK07904 short chain dehydroge 42.9 58 0.0013 33.8 6.5 72 497-572 6-78 (253)
266 TIGR01830 3oxo_ACP_reduc 3-oxo 42.8 85 0.0018 31.6 7.6 65 200-279 1-66 (239)
267 PRK12548 shikimate 5-dehydroge 42.7 1.1E+02 0.0024 32.8 8.7 80 196-292 125-207 (289)
268 PF01210 NAD_Gly3P_dh_N: NAD-d 42.6 42 0.00091 32.4 5.0 41 200-254 2-42 (157)
269 PRK00536 speE spermidine synth 42.6 64 0.0014 34.2 6.7 57 497-560 71-130 (262)
270 PRK06057 short chain dehydroge 42.5 72 0.0016 32.9 7.1 63 197-280 7-70 (255)
271 PRK07832 short chain dehydroge 42.4 91 0.002 32.6 8.0 78 199-291 2-86 (272)
272 PRK07201 short chain dehydroge 42.2 78 0.0017 37.9 8.3 79 197-291 371-456 (657)
273 TIGR01829 AcAcCoA_reduct aceto 42.1 1E+02 0.0022 31.1 8.2 77 200-291 3-86 (242)
274 TIGR01181 dTDP_gluc_dehyt dTDP 41.8 71 0.0015 33.8 7.2 74 199-292 1-82 (317)
275 PRK08303 short chain dehydroge 41.4 1.1E+02 0.0023 33.0 8.5 67 197-279 8-85 (305)
276 PF08016 PKD_channel: Polycyst 41.2 1.4E+02 0.003 33.8 9.7 91 88-179 324-422 (425)
277 PRK12475 thiamine/molybdopteri 41.1 1.4E+02 0.003 33.0 9.2 33 498-533 23-56 (338)
278 PRK07454 short chain dehydroge 41.1 53 0.0012 33.4 5.8 67 499-572 6-73 (241)
279 PRK13940 glutamyl-tRNA reducta 40.8 1E+02 0.0022 35.0 8.3 114 197-348 181-296 (414)
280 PRK07024 short chain dehydroge 40.5 69 0.0015 33.1 6.6 65 500-572 3-68 (257)
281 PRK07060 short chain dehydroge 40.3 90 0.0019 31.7 7.4 74 197-291 9-85 (245)
282 TIGR03022 WbaP_sugtrans Undeca 40.2 3E+02 0.0064 31.5 12.3 24 197-220 125-148 (456)
283 TIGR03589 PseB UDP-N-acetylglu 40.2 1.4E+02 0.003 32.3 9.2 78 198-292 5-83 (324)
284 PRK06077 fabG 3-ketoacyl-(acyl 40.1 1.3E+02 0.0028 30.7 8.6 81 197-292 6-93 (252)
285 TIGR00518 alaDH alanine dehydr 39.8 1E+02 0.0022 34.4 8.1 71 197-290 167-237 (370)
286 COG1087 GalE UDP-glucose 4-epi 39.8 2.1E+02 0.0045 31.1 9.8 106 501-627 2-111 (329)
287 PRK12829 short chain dehydroge 39.7 54 0.0012 33.8 5.7 65 499-572 11-76 (264)
288 PRK07688 thiamine/molybdopteri 39.7 1.4E+02 0.0031 32.8 9.2 26 196-221 23-48 (339)
289 TIGR01035 hemA glutamyl-tRNA r 39.6 3E+02 0.0065 31.2 12.0 119 196-347 179-299 (417)
290 PLN02986 cinnamyl-alcohol dehy 39.3 1.2E+02 0.0026 32.5 8.5 79 197-292 5-86 (322)
291 TIGR03589 PseB UDP-N-acetylglu 39.2 2.6E+02 0.0057 30.1 11.2 66 500-572 5-71 (324)
292 PRK05855 short chain dehydroge 39.0 1E+02 0.0023 35.8 8.6 69 196-280 314-383 (582)
293 PLN02591 tryptophan synthase 38.9 4.9E+02 0.011 27.4 15.5 132 200-349 81-222 (250)
294 PF03435 Saccharop_dh: Sacchar 38.7 48 0.001 36.9 5.4 64 502-572 1-64 (386)
295 PRK06522 2-dehydropantoate 2-r 38.7 2.1E+02 0.0045 30.4 10.2 40 199-252 2-41 (304)
296 PRK06935 2-deoxy-D-gluconate 3 38.5 1.3E+02 0.0028 31.1 8.3 66 197-279 15-81 (258)
297 PRK06196 oxidoreductase; Provi 38.5 1.1E+02 0.0023 33.0 7.9 75 197-291 26-107 (315)
298 PRK15181 Vi polysaccharide bio 38.4 3.1E+02 0.0067 29.9 11.7 114 499-627 15-134 (348)
299 PF01113 DapB_N: Dihydrodipico 38.4 61 0.0013 30.0 5.2 21 199-219 2-23 (124)
300 PF03721 UDPG_MGDP_dh_N: UDP-g 38.4 1E+02 0.0022 30.7 7.1 41 199-253 2-42 (185)
301 PF00070 Pyr_redox: Pyridine n 37.6 31 0.00067 28.9 2.8 31 501-534 1-31 (80)
302 PRK08278 short chain dehydroge 37.6 1.3E+02 0.0028 31.5 8.2 67 197-279 6-80 (273)
303 PRK06194 hypothetical protein; 37.5 73 0.0016 33.4 6.4 67 499-572 6-73 (287)
304 PRK08993 2-deoxy-D-gluconate 3 37.5 1.6E+02 0.0035 30.3 8.8 63 197-279 10-75 (253)
305 CHL00200 trpA tryptophan synth 37.5 5.2E+02 0.011 27.3 15.6 130 199-348 93-234 (263)
306 PRK12921 2-dehydropantoate 2-r 37.2 2.6E+02 0.0057 29.7 10.7 38 199-251 2-39 (305)
307 PRK07074 short chain dehydroge 37.1 1.4E+02 0.0029 30.7 8.2 76 199-292 4-86 (257)
308 PRK05786 fabG 3-ketoacyl-(acyl 37.0 1.6E+02 0.0034 29.8 8.5 66 197-279 5-71 (238)
309 cd01080 NAD_bind_m-THF_DH_Cycl 36.9 1.3E+02 0.0028 29.6 7.4 71 195-289 42-113 (168)
310 PRK07326 short chain dehydroge 36.9 64 0.0014 32.7 5.6 66 499-572 6-72 (237)
311 PF10727 Rossmann-like: Rossma 36.2 68 0.0015 30.0 5.1 108 197-339 10-120 (127)
312 PRK05482 potassium-transportin 36.2 1.2E+02 0.0026 35.6 8.0 48 125-172 449-500 (559)
313 PRK07889 enoyl-(acyl carrier p 36.1 1.4E+02 0.003 31.0 8.0 64 197-279 7-75 (256)
314 PLN02427 UDP-apiose/xylose syn 36.1 1.3E+02 0.0028 33.4 8.3 81 196-292 13-95 (386)
315 cd01485 E1-1_like Ubiquitin ac 36.0 2.6E+02 0.0056 28.1 9.7 33 499-533 19-51 (198)
316 cd01485 E1-1_like Ubiquitin ac 35.8 1.6E+02 0.0035 29.6 8.2 26 196-221 18-43 (198)
317 PRK07074 short chain dehydroge 35.7 70 0.0015 32.9 5.7 64 500-572 3-67 (257)
318 PRK08264 short chain dehydroge 35.6 1.1E+02 0.0024 30.9 7.2 73 197-291 6-81 (238)
319 PRK07023 short chain dehydroge 35.6 1.1E+02 0.0024 31.1 7.2 60 199-279 3-63 (243)
320 PRK09135 pteridine reductase; 35.5 98 0.0021 31.4 6.8 69 499-572 6-75 (249)
321 PRK08251 short chain dehydroge 35.4 94 0.002 31.7 6.6 68 500-572 3-71 (248)
322 PLN02695 GDP-D-mannose-3',5'-e 35.4 4.4E+02 0.0096 29.1 12.4 63 497-572 19-82 (370)
323 COG0169 AroE Shikimate 5-dehyd 35.2 1E+02 0.0022 33.1 6.8 46 196-254 125-170 (283)
324 PRK10637 cysG siroheme synthas 35.2 1.4E+02 0.0031 34.2 8.6 70 196-292 11-80 (457)
325 PLN02583 cinnamoyl-CoA reducta 35.2 90 0.002 33.3 6.6 70 499-574 6-77 (297)
326 PF01073 3Beta_HSD: 3-beta hyd 35.1 1.8E+02 0.0038 31.0 8.8 104 504-627 3-109 (280)
327 PRK08416 7-alpha-hydroxysteroi 35.1 89 0.0019 32.4 6.4 69 499-572 8-77 (260)
328 PRK12823 benD 1,6-dihydroxycyc 35.1 1.5E+02 0.0033 30.4 8.3 66 197-279 8-74 (260)
329 PRK06079 enoyl-(acyl carrier p 35.0 1.8E+02 0.0039 30.0 8.7 63 197-278 7-72 (252)
330 PRK05693 short chain dehydroge 34.9 1.1E+02 0.0024 31.9 7.2 72 198-291 2-80 (274)
331 TIGR03649 ergot_EASG ergot alk 34.8 74 0.0016 33.5 5.9 68 200-292 2-76 (285)
332 PRK06463 fabG 3-ketoacyl-(acyl 34.8 1.4E+02 0.0031 30.6 8.0 62 197-279 7-69 (255)
333 TIGR01832 kduD 2-deoxy-D-gluco 34.8 1.1E+02 0.0023 31.2 7.0 65 499-572 5-70 (248)
334 COG2104 ThiS Sulfur transfer p 34.6 97 0.0021 25.7 5.1 43 387-431 17-63 (68)
335 PRK06720 hypothetical protein; 34.5 2.1E+02 0.0046 27.9 8.6 66 197-278 16-82 (169)
336 cd05015 SIS_PGI_1 Phosphogluco 34.5 4.2E+02 0.009 25.5 10.5 74 498-574 19-95 (158)
337 PRK08177 short chain dehydroge 34.3 1.2E+02 0.0025 30.7 7.0 73 198-291 2-79 (225)
338 PRK13304 L-aspartate dehydroge 34.2 5.8E+02 0.012 26.9 12.6 68 199-292 3-70 (265)
339 PRK07041 short chain dehydroge 34.2 1.3E+02 0.0027 30.3 7.3 73 201-290 1-76 (230)
340 PRK04148 hypothetical protein; 33.9 90 0.0019 29.6 5.5 54 197-273 17-70 (134)
341 COG4262 Predicted spermidine s 33.9 1.6E+02 0.0035 32.6 8.0 69 497-572 288-362 (508)
342 PRK12747 short chain dehydroge 33.5 1.9E+02 0.0041 29.6 8.6 65 197-276 4-69 (252)
343 PRK06483 dihydromonapterin red 33.5 1.5E+02 0.0033 30.0 7.8 60 197-278 2-63 (236)
344 COG1748 LYS9 Saccharopine dehy 33.4 1.3E+02 0.0029 33.7 7.6 64 500-572 2-65 (389)
345 PRK07231 fabG 3-ketoacyl-(acyl 33.2 1.3E+02 0.0028 30.6 7.2 66 499-572 5-71 (251)
346 PRK06484 short chain dehydroge 33.1 1.4E+02 0.003 34.5 8.3 65 498-572 268-333 (520)
347 TIGR03466 HpnA hopanoid-associ 33.1 91 0.002 33.2 6.3 71 199-292 2-73 (328)
348 TIGR02964 xanthine_xdhC xanthi 33.0 2.1E+02 0.0045 30.0 8.7 35 498-535 99-133 (246)
349 PRK11908 NAD-dependent epimera 32.9 1.4E+02 0.0031 32.4 7.9 71 199-290 3-75 (347)
350 PF03446 NAD_binding_2: NAD bi 32.8 2.7E+02 0.0059 26.8 9.0 41 198-252 2-42 (163)
351 PRK12748 3-ketoacyl-(acyl-carr 32.7 1.9E+02 0.004 29.8 8.4 25 197-221 5-32 (256)
352 PRK09186 flagellin modificatio 32.6 1E+02 0.0022 31.5 6.4 69 499-572 4-73 (256)
353 cd00565 ThiS ThiaminS ubiquiti 32.5 95 0.0021 25.1 4.8 44 387-432 14-61 (65)
354 PF00670 AdoHcyase_NAD: S-aden 32.0 36 0.00078 33.3 2.6 37 498-537 22-58 (162)
355 PLN02819 lysine-ketoglutarate 31.9 1.1E+02 0.0025 38.7 7.5 69 496-572 566-645 (1042)
356 TIGR00262 trpA tryptophan synt 31.5 6.3E+02 0.014 26.5 12.9 121 210-349 105-231 (256)
357 TIGR00933 2a38 potassium uptak 31.4 1.1E+02 0.0024 34.3 6.8 60 110-171 113-179 (390)
358 cd00757 ThiF_MoeB_HesA_family 31.3 2.3E+02 0.0049 29.1 8.6 26 196-221 20-45 (228)
359 COG4292 Predicted membrane pro 31.2 36 0.00078 37.2 2.6 41 128-168 57-97 (387)
360 PRK12481 2-deoxy-D-gluconate 3 31.2 1.1E+02 0.0024 31.5 6.4 65 499-572 8-73 (251)
361 PLN02427 UDP-apiose/xylose syn 31.2 1.4E+02 0.003 33.1 7.5 70 498-572 13-83 (386)
362 PRK08690 enoyl-(acyl carrier p 31.2 1.6E+02 0.0034 30.6 7.6 25 197-221 6-33 (261)
363 PRK05557 fabG 3-ketoacyl-(acyl 31.1 1.3E+02 0.0028 30.3 6.8 68 499-572 5-73 (248)
364 PRK06914 short chain dehydroge 30.8 1.1E+02 0.0025 31.8 6.5 67 500-571 4-71 (280)
365 PRK10750 potassium transporter 30.8 32 0.0007 39.8 2.4 68 101-169 275-349 (483)
366 PRK10750 potassium transporter 30.7 1.5E+02 0.0033 34.3 7.8 33 109-144 191-223 (483)
367 PRK09414 glutamate dehydrogena 30.7 1.8E+02 0.0038 33.4 8.1 33 196-241 231-263 (445)
368 PRK05562 precorrin-2 dehydroge 30.6 1.1E+02 0.0024 31.6 5.9 56 498-564 24-79 (223)
369 TIGR01683 thiS thiamine biosyn 30.6 1.4E+02 0.0031 24.0 5.5 44 387-432 13-60 (64)
370 TIGR03649 ergot_EASG ergot alk 30.5 67 0.0014 33.8 4.6 56 501-572 1-57 (285)
371 KOG1205 Predicted dehydrogenas 30.4 1.4E+02 0.0031 32.0 6.9 76 197-286 12-94 (282)
372 cd01484 E1-2_like Ubiquitin ac 30.4 2E+02 0.0043 30.0 7.9 39 199-250 1-39 (234)
373 TIGR00934 2a38euk potassium up 30.4 42 0.00091 40.8 3.2 79 108-186 54-137 (800)
374 PF01370 Epimerase: NAD depend 30.3 1.9E+02 0.004 29.0 7.8 73 200-293 1-75 (236)
375 PRK12745 3-ketoacyl-(acyl-carr 30.3 1.2E+02 0.0027 30.9 6.6 67 500-572 3-70 (256)
376 PF02386 TrkH: Cation transpor 30.3 51 0.0011 36.4 3.8 67 104-171 272-346 (354)
377 TIGR03438 probable methyltrans 30.3 3.8E+02 0.0083 28.8 10.5 59 203-276 72-130 (301)
378 PRK06079 enoyl-(acyl carrier p 30.2 1.3E+02 0.0028 31.1 6.7 64 499-572 7-73 (252)
379 TIGR01181 dTDP_gluc_dehyt dTDP 30.2 1.1E+02 0.0024 32.3 6.3 67 501-572 1-68 (317)
380 COG0168 TrkG Trk-type K+ trans 29.8 1.3E+02 0.0028 35.0 7.1 51 125-175 196-253 (499)
381 PRK08945 putative oxoacyl-(acy 29.7 2.1E+02 0.0046 29.1 8.1 43 196-252 11-54 (247)
382 PRK06138 short chain dehydroge 29.7 1.3E+02 0.0027 30.8 6.4 66 499-572 5-71 (252)
383 PRK06101 short chain dehydroge 29.7 1E+02 0.0022 31.5 5.7 62 500-572 2-64 (240)
384 PRK08265 short chain dehydroge 29.6 1.1E+02 0.0024 31.8 6.0 64 499-572 6-70 (261)
385 PRK07523 gluconate 5-dehydroge 29.5 1.3E+02 0.0028 31.0 6.5 67 499-572 10-77 (255)
386 TIGR02964 xanthine_xdhC xanthi 29.1 2.7E+02 0.0058 29.2 8.7 85 196-308 99-183 (246)
387 COG0168 TrkG Trk-type K+ trans 29.0 82 0.0018 36.7 5.3 69 104-174 403-481 (499)
388 PRK10124 putative UDP-glucose 29.0 7E+02 0.015 28.7 12.9 24 197-220 143-166 (463)
389 TIGR02632 RhaD_aldol-ADH rhamn 28.9 2.5E+02 0.0053 34.1 9.5 69 197-279 414-483 (676)
390 PRK07831 short chain dehydroge 28.8 1.3E+02 0.0029 31.0 6.5 69 499-572 17-87 (262)
391 PRK08017 oxidoreductase; Provi 28.7 71 0.0015 32.8 4.4 60 500-572 3-63 (256)
392 PRK07417 arogenate dehydrogena 28.7 1.3E+02 0.0027 32.0 6.4 39 199-251 2-40 (279)
393 PF03793 PASTA: PASTA domain; 28.7 1.3E+02 0.0028 23.8 5.0 49 382-430 3-60 (63)
394 PRK06997 enoyl-(acyl carrier p 28.5 1.8E+02 0.004 30.2 7.5 64 197-279 6-74 (260)
395 PRK08703 short chain dehydroge 28.4 2E+02 0.0043 29.1 7.7 42 197-252 6-48 (239)
396 PRK06488 sulfur carrier protei 28.4 1.6E+02 0.0034 23.7 5.5 44 387-432 14-61 (65)
397 PRK06841 short chain dehydroge 28.3 2.5E+02 0.0054 28.6 8.5 76 197-291 15-97 (255)
398 PRK05993 short chain dehydroge 28.3 81 0.0017 33.1 4.8 61 499-572 4-65 (277)
399 PRK08993 2-deoxy-D-gluconate 3 28.2 2.1E+02 0.0047 29.3 7.9 65 499-572 10-75 (253)
400 PRK07984 enoyl-(acyl carrier p 28.2 2.4E+02 0.0051 29.5 8.3 25 197-221 6-33 (262)
401 PRK10675 UDP-galactose-4-epime 28.2 2.3E+02 0.0049 30.5 8.4 76 199-292 2-82 (338)
402 TIGR00934 2a38euk potassium up 28.0 44 0.00094 40.6 2.8 65 102-167 586-662 (800)
403 PRK12935 acetoacetyl-CoA reduc 27.9 1.6E+02 0.0035 29.9 6.9 68 499-572 6-74 (247)
404 PRK12828 short chain dehydroge 27.9 1.2E+02 0.0026 30.4 5.9 65 499-572 7-72 (239)
405 PRK08594 enoyl-(acyl carrier p 27.9 1.3E+02 0.0029 31.2 6.3 67 499-572 7-77 (257)
406 PRK06953 short chain dehydroge 27.8 1.9E+02 0.0041 29.0 7.3 59 199-279 3-62 (222)
407 PF00070 Pyr_redox: Pyridine n 27.8 1E+02 0.0022 25.7 4.4 23 199-221 1-23 (80)
408 KOG1430 C-3 sterol dehydrogena 27.8 3E+02 0.0066 30.6 9.1 113 498-627 3-119 (361)
409 PRK03612 spermidine synthase; 27.7 4.2E+02 0.009 31.1 10.9 63 498-565 297-365 (521)
410 PLN02366 spermidine synthase 27.7 1.4E+02 0.003 32.5 6.4 62 498-565 91-156 (308)
411 TIGR00933 2a38 potassium uptak 27.5 90 0.002 35.0 5.2 40 125-164 346-389 (390)
412 PRK12824 acetoacetyl-CoA reduc 27.5 1.9E+02 0.0041 29.2 7.3 67 500-572 3-70 (245)
413 PF08659 KR: KR domain; Inter 27.4 1.1E+02 0.0023 30.2 5.1 70 501-575 2-74 (181)
414 PF00290 Trp_syntA: Tryptophan 27.1 7.7E+02 0.017 26.1 12.5 146 177-347 72-228 (259)
415 KOG1370 S-adenosylhomocysteine 27.1 1.2E+02 0.0026 32.7 5.5 34 197-244 214-247 (434)
416 cd05291 HicDH_like L-2-hydroxy 27.1 67 0.0015 34.7 4.0 41 199-251 2-42 (306)
417 cd05015 SIS_PGI_1 Phosphogluco 27.1 5.7E+02 0.012 24.5 11.9 60 178-251 6-67 (158)
418 PLN03209 translocon at the inn 26.9 1.1E+02 0.0024 36.2 5.8 70 498-572 79-156 (576)
419 PRK08324 short chain dehydroge 26.9 1.8E+02 0.004 35.2 8.0 79 196-291 421-506 (681)
420 KOG3676 Ca2+-permeable cation 26.9 1.9E+02 0.0042 35.1 7.7 57 125-181 584-649 (782)
421 PRK12826 3-ketoacyl-(acyl-carr 26.9 1.7E+02 0.0037 29.6 6.8 67 499-572 6-73 (251)
422 PRK13394 3-hydroxybutyrate deh 26.7 1.7E+02 0.0036 30.0 6.8 67 499-572 7-74 (262)
423 PRK07062 short chain dehydroge 26.7 1.5E+02 0.0032 30.7 6.4 69 499-572 8-77 (265)
424 PRK05225 ketol-acid reductoiso 26.6 78 0.0017 36.2 4.3 23 196-218 35-57 (487)
425 PRK09242 tropinone reductase; 26.5 1.5E+02 0.0033 30.4 6.4 69 499-572 9-78 (257)
426 PRK12429 3-hydroxybutyrate deh 26.5 1.2E+02 0.0026 31.0 5.6 66 500-572 5-71 (258)
427 COG1086 Predicted nucleoside-d 26.4 4.9E+02 0.011 30.7 10.7 127 499-640 250-379 (588)
428 PF00106 adh_short: short chai 26.4 1.1E+02 0.0024 28.9 5.0 68 500-572 1-70 (167)
429 PRK08063 enoyl-(acyl carrier p 26.4 1.8E+02 0.0038 29.6 6.9 67 500-572 5-72 (250)
430 PLN00015 protochlorophyllide r 26.3 2E+02 0.0043 30.8 7.4 63 201-279 1-65 (308)
431 PRK12937 short chain dehydroge 26.2 1.9E+02 0.0042 29.2 7.1 68 499-572 5-73 (245)
432 COG1377 FlhB Flagellar biosynt 26.2 9.4E+02 0.02 26.8 12.4 45 308-355 299-346 (363)
433 PF00899 ThiF: ThiF family; I 26.2 83 0.0018 29.3 3.9 25 197-221 2-26 (135)
434 PRK15181 Vi polysaccharide bio 26.1 2.5E+02 0.0053 30.7 8.3 81 197-292 15-99 (348)
435 PRK08762 molybdopterin biosynt 26.1 3.1E+02 0.0066 30.6 9.1 26 196-221 134-159 (376)
436 PRK06947 glucose-1-dehydrogena 26.1 1.8E+02 0.0039 29.6 6.8 68 499-572 2-70 (248)
437 PRK06179 short chain dehydroge 26.1 1.2E+02 0.0026 31.5 5.6 58 500-572 5-63 (270)
438 TIGR00872 gnd_rel 6-phosphoglu 26.1 5.2E+02 0.011 27.6 10.6 67 199-292 2-68 (298)
439 cd01491 Ube1_repeat1 Ubiquitin 26.0 4.4E+02 0.0095 28.3 9.8 104 498-635 18-138 (286)
440 PRK09134 short chain dehydroge 26.0 2E+02 0.0044 29.5 7.2 69 498-572 8-77 (258)
441 KOG1052 Glutamate-gated kainat 25.9 1.1E+02 0.0023 37.0 5.7 52 129-180 383-434 (656)
442 TIGR03325 BphB_TodD cis-2,3-di 25.9 1.7E+02 0.0036 30.3 6.6 64 499-572 5-69 (262)
443 PRK07533 enoyl-(acyl carrier p 25.9 2.7E+02 0.0058 28.8 8.2 25 197-221 10-37 (258)
444 PRK07023 short chain dehydroge 25.8 1.9E+02 0.0042 29.3 7.0 60 501-572 3-63 (243)
445 PRK07680 late competence prote 25.7 5.7E+02 0.012 26.8 10.7 44 199-252 2-45 (273)
446 PRK05854 short chain dehydroge 25.7 1.5E+02 0.0033 31.8 6.4 69 499-572 14-83 (313)
447 PRK06197 short chain dehydroge 25.7 1.4E+02 0.0031 31.7 6.2 70 498-572 15-85 (306)
448 PRK06182 short chain dehydroge 25.6 95 0.0021 32.4 4.7 61 499-572 3-64 (273)
449 TIGR01472 gmd GDP-mannose 4,6- 25.5 1.6E+02 0.0034 32.1 6.5 66 500-572 1-73 (343)
450 PRK06988 putative formyltransf 25.5 2.7E+02 0.006 30.2 8.3 23 199-221 4-26 (312)
451 PRK11880 pyrroline-5-carboxyla 25.5 1.7E+02 0.0038 30.5 6.7 43 199-252 4-46 (267)
452 PF01073 3Beta_HSD: 3-beta hyd 25.4 1.2E+02 0.0027 32.2 5.6 70 204-292 5-75 (280)
453 PRK12938 acetyacetyl-CoA reduc 25.4 1.8E+02 0.0039 29.6 6.6 67 500-572 4-71 (246)
454 PLN02657 3,8-divinyl protochlo 25.3 1.4E+02 0.003 33.4 6.2 77 198-290 61-143 (390)
455 cd04724 Tryptophan_synthase_al 25.2 7.8E+02 0.017 25.5 13.1 131 200-349 79-219 (242)
456 COG1584 Predicted membrane pro 25.1 96 0.0021 31.2 4.1 49 129-177 87-139 (207)
457 PRK00094 gpsA NAD(P)H-dependen 25.1 3.4E+02 0.0073 29.1 9.0 40 199-252 3-42 (325)
458 COG1648 CysG Siroheme synthase 25.1 1.3E+02 0.0028 30.8 5.3 39 498-539 11-49 (210)
459 PRK07890 short chain dehydroge 25.0 1.2E+02 0.0027 31.0 5.4 67 499-572 5-72 (258)
460 COG1893 ApbA Ketopantoate redu 25.0 4.2E+02 0.0091 28.7 9.6 72 199-291 2-75 (307)
461 PRK12825 fabG 3-ketoacyl-(acyl 25.0 1.9E+02 0.004 29.1 6.7 67 500-572 7-74 (249)
462 COG0686 Ald Alanine dehydrogen 25.0 1.5E+02 0.0032 32.3 5.7 71 195-288 166-236 (371)
463 PRK06181 short chain dehydroge 24.9 1.3E+02 0.0029 30.9 5.6 66 500-572 2-68 (263)
464 PRK05659 sulfur carrier protei 24.9 1.7E+02 0.0036 23.5 5.0 45 386-431 14-61 (66)
465 PRK07792 fabG 3-ketoacyl-(acyl 24.8 2.3E+02 0.0049 30.4 7.5 69 498-572 11-80 (306)
466 PRK10637 cysG siroheme synthas 24.7 3.1E+02 0.0066 31.5 8.9 57 498-565 11-67 (457)
467 KOG4169 15-hydroxyprostaglandi 24.7 2.1E+02 0.0046 29.8 6.6 66 197-279 6-73 (261)
468 PRK00048 dihydrodipicolinate r 24.7 2.5E+02 0.0054 29.5 7.6 35 199-245 3-38 (257)
469 PRK06172 short chain dehydroge 24.4 1.5E+02 0.0033 30.3 5.9 67 499-572 7-74 (253)
470 PF13738 Pyr_redox_3: Pyridine 24.4 98 0.0021 30.5 4.3 35 498-535 166-200 (203)
471 TIGR00870 trp transient-recept 24.2 1.9E+02 0.0042 35.3 7.6 30 152-181 587-617 (743)
472 PRK07063 short chain dehydroge 24.1 2E+02 0.0043 29.6 6.7 69 499-572 7-76 (260)
473 PRK06940 short chain dehydroge 24.1 1.9E+02 0.0041 30.3 6.7 66 499-572 2-67 (275)
474 PRK08226 short chain dehydroge 24.0 1.8E+02 0.0038 30.0 6.3 66 499-572 6-72 (263)
475 TIGR03599 YloV DAK2 domain fus 23.9 1.9E+02 0.0042 33.9 7.1 87 242-362 321-410 (530)
476 PF00342 PGI: Phosphoglucose i 23.9 5.3E+02 0.011 30.0 10.6 65 179-253 76-145 (486)
477 COG2985 Predicted permease [Ge 23.8 51 0.0011 37.6 2.2 57 379-436 292-348 (544)
478 PF02826 2-Hacid_dh_C: D-isome 23.7 4.3E+02 0.0094 25.8 8.7 26 196-221 35-60 (178)
479 PRK09730 putative NAD(P)-bindi 23.7 2E+02 0.0043 29.1 6.6 67 500-572 2-69 (247)
480 PRK14618 NAD(P)H-dependent gly 23.6 1.7E+02 0.0037 31.8 6.3 40 199-252 6-45 (328)
481 PRK08125 bifunctional UDP-gluc 23.6 2E+02 0.0042 34.8 7.4 75 196-291 314-390 (660)
482 PRK12746 short chain dehydroge 23.5 2.2E+02 0.0047 29.1 6.9 68 499-572 6-74 (254)
483 PRK07440 hypothetical protein; 23.5 2.2E+02 0.0048 23.6 5.5 44 386-431 18-65 (70)
484 PRK06482 short chain dehydroge 23.5 1.7E+02 0.0036 30.5 6.1 63 500-572 3-66 (276)
485 smart00822 PKS_KR This enzymat 23.4 2.2E+02 0.0049 26.5 6.5 66 199-279 2-71 (180)
486 PRK07985 oxidoreductase; Provi 23.4 1.7E+02 0.0037 31.1 6.2 69 499-572 49-118 (294)
487 PRK01438 murD UDP-N-acetylmura 23.3 3.1E+02 0.0067 31.5 8.7 26 196-221 15-40 (480)
488 PRK11064 wecC UDP-N-acetyl-D-m 23.3 4.1E+02 0.0088 30.1 9.5 40 198-251 4-43 (415)
489 PRK07856 short chain dehydroge 23.3 2.6E+02 0.0056 28.6 7.4 59 197-279 6-65 (252)
490 COG0499 SAM1 S-adenosylhomocys 23.2 1.4E+02 0.003 33.1 5.2 48 197-265 209-257 (420)
491 PLN02686 cinnamoyl-CoA reducta 23.2 3.1E+02 0.0067 30.3 8.4 80 196-290 52-135 (367)
492 PF00056 Ldh_1_N: lactate/mala 23.2 1.3E+02 0.0028 28.5 4.6 38 199-248 2-40 (141)
493 PLN02896 cinnamyl-alcohol dehy 23.1 2.2E+02 0.0047 31.1 7.1 66 499-572 10-76 (353)
494 PRK06114 short chain dehydroge 23.1 2.1E+02 0.0045 29.4 6.6 68 499-572 8-76 (254)
495 cd01483 E1_enzyme_family Super 23.1 4.3E+02 0.0093 24.6 8.3 31 501-534 1-32 (143)
496 PRK07688 thiamine/molybdopteri 23.0 4.8E+02 0.01 28.7 9.7 33 498-533 23-56 (339)
497 PRK06128 oxidoreductase; Provi 23.0 3.4E+02 0.0074 28.8 8.5 68 197-279 55-124 (300)
498 PRK08415 enoyl-(acyl carrier p 23.0 3.4E+02 0.0073 28.5 8.3 25 197-221 5-32 (274)
499 PRK08213 gluconate 5-dehydroge 23.0 2.2E+02 0.0047 29.3 6.8 67 499-572 12-79 (259)
500 PF14544 DUF4443: Domain of un 22.9 1.8E+02 0.004 26.4 5.1 58 376-434 16-88 (108)
No 1
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=100.00 E-value=3.3e-34 Score=326.11 Aligned_cols=425 Identities=15% Similarity=0.213 Sum_probs=316.0
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
|++|||+|..|..++++|...+. .++++ +.+++..+.+.+.. + +.++.||+++.++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~vi-d~~~~~~~~~~~~~-----~--~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-------------DVTVI-DTDEERLRRLQDRL-----D--VRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------cEEEE-ECCHHHHHHHHhhc-----C--EEEEEeCCCCHHHHHH
Confidence 89999999999999999987654 46666 77777777654311 2 3345799999999999
Q ss_pred ccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCc---HHHH--hhcCCCeEEEchhhHHHHH
Q 004328 279 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLF 353 (761)
Q Consensus 279 a~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~---~~~l--~~~g~d~Vi~~~~~~~~ll 353 (761)
+++++|+.+|+++++ |..++.+++.++.+. +..++|+++.++++ .+++ +.+|++.|++|+.++++.+
T Consensus 61 ~~~~~a~~vi~~~~~------~~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l 132 (453)
T PRK09496 61 AGAEDADLLIAVTDS------DETNMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREI 132 (453)
T ss_pred cCCCcCCEEEEecCC------hHHHHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHH
Confidence 999999988776642 233444555566654 46678999988877 2334 7789999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcccC-----CeEEEeeCCCCCCCCHHHHHhh-cC-CeEEEEEEECCeEEecCCCCCcccCCCE
Q 004328 354 VQCSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDK 426 (761)
Q Consensus 354 a~~~~~Pg~~~v~~~Ll~~~~-----~ei~v~~~~~l~G~t~~e~~~~-~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~ 426 (761)
++.+..|+..++ +.+.+ .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+
T Consensus 133 ~~~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~ 207 (453)
T PRK09496 133 ARLIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDE 207 (453)
T ss_pred HHHhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCE
Confidence 999999998664 33333 3455556678999999999876 44 7899999999984 58999999999999
Q ss_pred EEEEecCCCCCCcccccccccccccccchhhhcccCCCChhHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEe
Q 004328 427 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG 506 (761)
Q Consensus 427 Livia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLI~G 506 (761)
|+++++.+++.+ + . ... +.+ ....+|++|||
T Consensus 208 l~v~g~~~~l~~-------------~--------------------~----~~~-~~~-----------~~~~~~iiIiG 238 (453)
T PRK09496 208 VYFIGAREHIRA-------------V--------------------M----SEF-GRL-----------EKPVKRVMIVG 238 (453)
T ss_pred EEEEeCHHHHHH-------------H--------------------H----HHh-Ccc-----------CCCCCEEEEEC
Confidence 999999864422 1 0 011 111 12469999999
Q ss_pred eccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhccccccCCCCC
Q 004328 507 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEEL 586 (761)
Q Consensus 507 w~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a~~~d~~~ 586 (761)
||+.+..+++.|.+ .|..+++++.. +++.+.+. ....+ +.++.||+++.++|++++++ +++
T Consensus 239 ~G~~g~~l~~~L~~---~~~~v~vid~~--~~~~~~~~----~~~~~--~~~i~gd~~~~~~L~~~~~~-----~a~--- 299 (453)
T PRK09496 239 GGNIGYYLAKLLEK---EGYSVKLIERD--PERAEELA----EELPN--TLVLHGDGTDQELLEEEGID-----EAD--- 299 (453)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEECC--HHHHHHHH----HHCCC--CeEEECCCCCHHHHHhcCCc-----cCC---
Confidence 99999999999964 57789999863 34433332 11223 34599999999999999888 344
Q ss_pred CcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecchhHHHHHHH
Q 004328 587 PLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 666 (761)
Q Consensus 587 ~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~~i~s~vlAq 666 (761)
.+++++++ |..|+++.+.+|.+ +. .++|+++.++++.+.++.+|.+ .+|.+..+.+..+++
T Consensus 300 --~vi~~~~~----------~~~n~~~~~~~~~~----~~--~~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~ 360 (453)
T PRK09496 300 --AFIALTND----------DEANILSSLLAKRL----GA--KKVIALVNRPAYVDLVEGLGID-IAISPRQATASEILR 360 (453)
T ss_pred --EEEECCCC----------cHHHHHHHHHHHHh----CC--CeEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHH
Confidence 67777654 47889988888874 43 3899999999999999988854 555666777888999
Q ss_pred HhhcccHHHHHHHhhC-CCCCeEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCC
Q 004328 667 VVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTD 745 (761)
Q Consensus 667 ~a~~~~l~~v~~~ll~-~eg~ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD 745 (761)
....|.+..++....+ .+..|+.+.+.+.+ .+.++.++.. .++..++|+.++++. ++|++ .+++++||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el~l---~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD 429 (453)
T PRK09496 361 HVRRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDLKL---PKGVLIGAIVRGGEV-IIPTG---DTVIEPGD 429 (453)
T ss_pred HhhccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHcCC---CCCCEEEEEEECCEE-EcCCC---CcEECCCC
Confidence 8888887776653222 12335555544544 4667777732 468899999988877 78864 45999999
Q ss_pred EEEEEecCCC
Q 004328 746 SLIVISELEG 755 (761)
Q Consensus 746 ~lIVi~~~~~ 755 (761)
.|+++++.+.
T Consensus 430 ~l~v~~~~~~ 439 (453)
T PRK09496 430 HVIVFVLDKK 439 (453)
T ss_pred EEEEEEcCcc
Confidence 9999998776
No 2
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=100.00 E-value=3e-35 Score=275.91 Aligned_cols=205 Identities=56% Similarity=0.849 Sum_probs=188.0
Q ss_pred cCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHHHHhcCCHH
Q 004328 284 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI 363 (761)
Q Consensus 284 A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~~~~~Pg~~ 363 (761)
||+||||++++|++|+|+++++++||++.+++....|+|||+.|.++++++|..||..|.+++++++++|.||++|||+.
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ~GL~ 80 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQPGLA 80 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccCccHH
Confidence 78999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCeEEEeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCCccccc
Q 004328 364 KIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS 443 (761)
Q Consensus 364 ~v~~~Ll~~~~~ei~v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~~~~~~ 443 (761)
.+|+++|+|+.++||+..+|++.|++|.|+++.|+++++||+.|+|++.+||++|+++++||++++||+..+. +++..|
T Consensus 81 ~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~-~~~~~~ 159 (206)
T PF06241_consen 81 QIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGK-RPQTAY 159 (206)
T ss_pred HHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCc-cceEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 567777
Q ss_pred ccccccccccchhhhcccCCCChhHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 004328 444 SNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLG 497 (761)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (761)
.++. .++....+ +..+.+++..++|+++++++|.++++|+||+..+
T Consensus 160 ~~v~-----~~n~~~~~---~~~~~~~e~~k~rl~nivkrp~kslsk~Sd~~lg 205 (206)
T PF06241_consen 160 PSVR-----MENITSPE---DVRKHAFELWKTRLENIVKRPNKSLSKGSDWSLG 205 (206)
T ss_pred cccc-----cccccCCC---chhhhhhhhhHhHHHHHHhCcccccccccccccC
Confidence 6652 23333333 3566788999999999999999999999998754
No 3
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=9.4e-27 Score=250.13 Aligned_cols=583 Identities=15% Similarity=0.204 Sum_probs=373.4
Q ss_pred CChhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-cccCCCeEE
Q 004328 126 QSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQM-QVLESDHII 201 (761)
Q Consensus 126 ~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~~~~~lr~G~~~-~v~~~~HiI 201 (761)
.+++++.| |..+|.+|+|||| .|..||+|.++++++|+.+|+..+.-|.+.+.++- +-|... ....+.|||
T Consensus 287 ltyw~cvy--fl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~---kyggeyk~ehgkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVY--FLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK---KYGGEYKAEHGKKHIV 361 (1103)
T ss_pred chhhheee--eeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc---ccCceeehhcCCeeEE
Confidence 56789999 7788899999999 78999999999999999999988888888776542 224322 234699999
Q ss_pred EEccCc--cHHHHHHHHHhcccccccccccccCcceEEEEeCC-ChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 202 VCGVNS--HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 202 I~G~~~--~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~-~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
|||+-. ....+++.+...+.. .-.-.||.+-.. |.-++|.+..++ -..|-+.+|...++-+|.|
T Consensus 362 vcghityesvshflkdflhedrd--------dvdvevvflhr~~pdleleglfkrh-----ft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRD--------DVDVEVVFLHRISPDLELEGLFKRH-----FTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EecceeHHHHHHHHHHHhhcccc--------ccceEEEEEecCCCCcchHHHHhhh-----eeeEEEecccccChhhhhh
Confidence 999863 567778887654431 112357777543 556778777543 3567778999999999999
Q ss_pred ccccccCeEEEecCCC--CCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHh------hcCCCeEEEchhhHH
Q 004328 279 AAANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLK------SLSGLKVEPVENVAS 350 (761)
Q Consensus 279 a~~~~A~avIIl~~~~--d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~------~~g~d~Vi~~~~~~~ 350 (761)
+.+++|++++|++.+. |++.+|+.+++.++++++.. ++.++|.++..-.|..+|- ---+|.|||..++.-
T Consensus 429 vki~~adaclvlankyc~dpdaedaanimrvisiknys--~dirvi~qlmqyhnkayllnipswdwk~gddviclaelkl 506 (1103)
T KOG1420|consen 429 VKIESADACLVLANKYCADPDAEDAANIMRVISIKNYS--PDIRVITQLMQYHNKAYLLNIPSWDWKEGDDVICLAELKL 506 (1103)
T ss_pred eeccccceeeeecccccCCCChhhhhhheEEEEeccCC--CchhHHHHHHHhhchheeecCCCcccccCCceEEehhhhh
Confidence 9999999999999863 66677999999999998877 4777776555544444322 224678999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc-------------------cCCeEEEeeCC-CCCCCCHHHHHhh-cC--CeEEEEEEE
Q 004328 351 KLFVQCSRQKGLIKIYRHLLNY-------------------RKNIFNLWSFP-NLAGIKYRQLRRG-FQ--EAVVCGLYR 407 (761)
Q Consensus 351 ~lla~~~~~Pg~~~v~~~Ll~~-------------------~~~ei~v~~~~-~l~G~t~~e~~~~-~~--~~iviGI~r 407 (761)
..+||+|..||.+..+.+|+.. .|.|.|....+ .|+|++|.++... |. +..+++|+-
T Consensus 507 gfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~ 586 (1103)
T KOG1420|consen 507 GFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEY 586 (1103)
T ss_pred hhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeee
Confidence 9999999999999999988753 13688877754 7999999997654 33 467788862
Q ss_pred ------CCeEEecCCCCCcccCCCEEEEEecCCCCCCccccc-----ccccccccc-cchhhhcccCCCChhHHHHHHHH
Q 004328 408 ------NGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS-----SNVANRMNI-SQHLKVLENNSDSTSYAIELVNA 475 (761)
Q Consensus 408 ------~G~~~lnP~~d~~I~~gD~Livia~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 475 (761)
+.++.+||.+...|++|..=++||.+.+..+..--| .|.+...-. --.-+..++ .+....+..++
T Consensus 587 k~een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddikd~~likkckckn~k~---~q~~~ls~~~k 663 (1103)
T KOG1420|consen 587 KDEENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIKDPKLIKKCKCKNLKD---EQPSTLSPKKK 663 (1103)
T ss_pred ccccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhcccCHHHHHhcCCCcccc---cCchhcCcccc
Confidence 356889999999999999999999886443321000 000000000 000000000 00000000000
Q ss_pred H------------HhhhhcCCC-CC-----------CCCC---------------------C-CCCCCCCCeEEEEeecc
Q 004328 476 R------------LELIAKRPS-KP-----------GSKA---------------------T-DGNLGPKERILLLGWRP 509 (761)
Q Consensus 476 ~------------~~~~~~~~~-~~-----------~~~~---------------------~-~~~~~~~~~iLI~Gw~~ 509 (761)
+ -+...+.+. .| .+|. + .++.-...|+++|=++.
T Consensus 664 ~~ngg~k~~p~~sp~~~r~~ts~~~g~~~~~~f~~~~mkydstgmfhwcp~k~ledcil~r~qaamtvlnghvvvclfad 743 (1103)
T KOG1420|consen 664 QRNGGMKNSPNTSPKLMRHDTSLIPGNDQIDNFDSHVMKYDSTGMFHWCPPKELEDCILTRSQAAMTVLNGHVVVCLFAD 743 (1103)
T ss_pred CCCCCccCCCCCCHHHhcCCcccCCCCcchhhhhhhhhccccccceeecCchhHHHHhhhhhHhhheeecCcEEEEEecC
Confidence 0 000000000 00 0000 0 11234568999999987
Q ss_pred CHHHHH------HHHh----hhcCCCCEEEEEeCCChhHHH-hhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhccc
Q 004328 510 DVVEMI------EEYD----NYLGPGSVLEILSDVPLDDRK-RASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQN 578 (761)
Q Consensus 510 ~~~~li------~eL~----~~~~~gs~v~ii~~~p~~er~-~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~ 578 (761)
.-..++ .-|. +|. .-.+|+++.+..--.|+ +.+ ..++.+.+ ..|.|.+++.|+..+|+
T Consensus 744 ~dspliglrnlvmplrasnfhyh-elkhvvivgsieylrrewktl-----~nlpkisi--lngsplsradlravnin--- 812 (1103)
T KOG1420|consen 744 VDSPLIGLRNLVMPLRASNFHYH-ELKHVVIVGSIEYLRREWKTL-----HNLPKISI--LNGSPLSRADLRAVNIN--- 812 (1103)
T ss_pred CCCchhhhhhheeeccccccchh-heeeEEEEccHHHHHHHHHHH-----hCCCceee--cCCCCCchhhhhhcccc---
Confidence 644443 2222 232 22467777763221221 111 34566555 99999999999999999
Q ss_pred cccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhH--h------------------------------CC
Q 004328 579 SFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNK--L------------------------------GV 626 (761)
Q Consensus 579 a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~--~------------------------------g~ 626 (761)
-+| .++||+-.--..+|+.-+|++.++..|.++.++=+ . |.
T Consensus 813 --lcd-----mcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~ 885 (1103)
T KOG1420|consen 813 --LCD-----MCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGV 885 (1103)
T ss_pred --ccc-----eeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCccccc
Confidence 356 78888743222358899999999999999876421 1 11
Q ss_pred CcceEEEEEEeccccchhcccCCcc---eEEecc----------hhHHHHHHHH----------------hhcccHHHHH
Q 004328 627 KVQNLVAEIVDSKLGKQIARNKPSL---TYIAAE----------EIMSLVTAQV----------------VENNELNEVW 677 (761)
Q Consensus 627 ~~~~iVaEi~~~~~~~~l~~~~~~~---~~I~s~----------~i~s~vlAq~----------------a~~~~l~~v~ 677 (761)
. +.+|+|+..+.|.+.+.+-..++ +.-++. .++..+|... ...|+++.++
T Consensus 886 n-vpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelil 964 (1103)
T KOG1420|consen 886 N-VPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELIL 964 (1103)
T ss_pred C-chhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHH
Confidence 2 46899999999987776532211 211111 1122222222 2335555554
Q ss_pred HHhhCC-CC------------C---eEEEEeccccccCCCCCCHHHHHHHHH-hCCeeEEEEEec------------CeE
Q 004328 678 KDILNA-EG------------D---EIYVKDISLYMKEGENPSFFELSERAH-LRREVAIGYVKD------------NKK 728 (761)
Q Consensus 678 ~~ll~~-eg------------~---ei~~~~~~~~~~~~~~~sf~~L~~~a~-~~~~ilIG~~~~------------~~~ 728 (761)
.|-.+- +| + +|.+.+. +|..-|.+-.|+++.-.|. ..|...||.+|- .-+
T Consensus 965 aegaglrggystpetlsnrdrcrvaqisl~dg-p~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryv 1043 (1103)
T KOG1420|consen 965 AEGAGLRGGYSTPETLSNRDRCRVAQISLLDG-PFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYV 1043 (1103)
T ss_pred hccccccCCCCChhhhccccceeeeeeeeecC-chhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeE
Confidence 432221 11 1 1333332 2444567889999987774 589999998762 237
Q ss_pred EECCCCCCCCceecCCCEEEEEecCC
Q 004328 729 VINPVPKSEPLSLTLTDSLIVISELE 754 (761)
Q Consensus 729 ~inP~~~~~~~~~~~gD~lIVi~~~~ 754 (761)
+.||| .++.+.+.|.+.|+-..+
T Consensus 1044 itnpp---~ef~l~ptd~vfvlmqfd 1066 (1103)
T KOG1420|consen 1044 ITNPP---YEFELVPTDLVFVLMQFD 1066 (1103)
T ss_pred ecCCc---hhheecccceEEEEEeeC
Confidence 88996 478999999999997654
No 4
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.95 E-value=6.1e-27 Score=258.01 Aligned_cols=229 Identities=19% Similarity=0.268 Sum_probs=174.3
Q ss_pred HHHHHHHhhhheeecc----CCCChhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHHHH-HHH
Q 004328 108 FSFVVFGGFLFFKFRD----ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMT-EQF 179 (761)
Q Consensus 108 ~~iv~~g~~~~~~~e~----~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~i~-~~l 179 (761)
..++++|.++++++++ ...|+.|||||++.++ +|+|||| .|..||+++++++++|+++|++.++.+. +.+
T Consensus 145 ~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~--tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i 222 (393)
T PRK10537 145 TSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTM--STVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVI 222 (393)
T ss_pred HHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheee--ecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666653 3479999999776655 4556665 6778999999999999999998887554 466
Q ss_pred HHHHHHHHccccccccCCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCC
Q 004328 180 RNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLN 259 (761)
Q Consensus 180 ~~~~~~lr~G~~~~v~~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~ 259 (761)
.+++++..+++..+...+||+||||||+.+..++++|.+.+. ++||+ |.++. ++.. ++
T Consensus 223 ~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-------------~vvVI-d~d~~--~~~~----~~-- 280 (393)
T PRK10537 223 RGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRGQ-------------AVTVI-VPLGL--EHRL----PD-- 280 (393)
T ss_pred HHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCCC-------------CEEEE-ECchh--hhhc----cC--
Confidence 667766444432233458999999999999999999987544 46666 33322 2211 11
Q ss_pred CceEEEEeCCCCCHHHHHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCC
Q 004328 260 HIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSG 339 (761)
Q Consensus 260 ~~~V~~~~Gd~~~~~~L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~ 339 (761)
+.+ ++.|||+++++|++||+++|++++++.+ +|.+++.+++++|+++ ++.++||++.++++.++++.+|+
T Consensus 281 g~~--vI~GD~td~e~L~~AgI~~A~aVI~~t~------dD~~Nl~ivL~ar~l~--p~~kIIa~v~~~~~~~~L~~~Ga 350 (393)
T PRK10537 281 DAD--LIPGDSSDSAVLKKAGAARARAILALRD------NDADNAFVVLAAKEMS--SDVKTVAAVNDSKNLEKIKRVHP 350 (393)
T ss_pred CCc--EEEeCCCCHHHHHhcCcccCCEEEEcCC------ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHhcCC
Confidence 344 4579999999999999999999887664 2677788889999988 47899999999999999999999
Q ss_pred CeEEEchhhHHHHHHHHHhcCCHHH-HHHHHh
Q 004328 340 LKVEPVENVASKLFVQCSRQKGLIK-IYRHLL 370 (761)
Q Consensus 340 d~Vi~~~~~~~~lla~~~~~Pg~~~-v~~~Ll 370 (761)
|.|++|+++.++.+++.+..+.+.. .+.+++
T Consensus 351 D~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 351 DMIFSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred CEEECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999988876554 444444
No 5
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.6e-20 Score=188.16 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=167.6
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
.++|+|.|+.|..+++.|.+.++ .+|++ |++++..++.... ......+.||++++++|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-------------~Vv~I-d~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-------------NVVLI-DRDEERVEEFLAD------ELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-------------ceEEE-EcCHHHHHHHhhh------hcceEEEEecCCCHHHHHh
Confidence 48999999999999999998765 46655 7888777763321 1334456899999999999
Q ss_pred ccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHHHHh
Q 004328 279 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSR 358 (761)
Q Consensus 279 a~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~~~~ 358 (761)
||+++|+++++++. .| ..+.+.|.++.+.+. ..++||+++++++.+.++..|++.+++|+..+++.+++.+.
T Consensus 62 agi~~aD~vva~t~-~d----~~N~i~~~la~~~~g---v~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~ 133 (225)
T COG0569 62 AGIDDADAVVAATG-ND----EVNSVLALLALKEFG---VPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIV 133 (225)
T ss_pred cCCCcCCEEEEeeC-CC----HHHHHHHHHHHHhcC---CCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhc
Confidence 99999998776554 33 477788888866553 34579999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcccC-----CeEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEec
Q 004328 359 QKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 432 (761)
Q Consensus 359 ~Pg~~~v~~~Ll~~~~-----~ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~ 432 (761)
+|++.++ +.+.+ -++.+.+.++++|++++|+..+++ ++.+++|.|+|...+.|++++.|++||+++++|.
T Consensus 134 ~p~~~~~----~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~ 209 (225)
T COG0569 134 TPGALDV----LELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGA 209 (225)
T ss_pred CCChheE----EeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEc
Confidence 9999877 44432 234444556899999999997765 7899999997745788999999999999999999
Q ss_pred CCCC
Q 004328 433 IHGK 436 (761)
Q Consensus 433 ~~~~ 436 (761)
.+.+
T Consensus 210 ~~~i 213 (225)
T COG0569 210 PEAL 213 (225)
T ss_pred HHHH
Confidence 8755
No 6
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.82 E-value=5.5e-19 Score=201.26 Aligned_cols=210 Identities=16% Similarity=0.208 Sum_probs=168.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.++|+||||||+.|..++++|...+. +++++ |.+++..+++.+.+ .++.++.||+++.+.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-------------~v~vi-d~~~~~~~~~~~~~------~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-------------SVKLI-ERDPERAEELAEEL------PNTLVLHGDGTDQEL 289 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------eEEEE-ECCHHHHHHHHHHC------CCCeEEECCCCCHHH
Confidence 48999999999999999999987554 56666 77887777765432 123456899999999
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHH
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 355 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~ 355 (761)
|+++++++|+++|+++++ |..++.+.+.++.+. ..++|+++.++++.+.++.+|++.|++++.++++.+++
T Consensus 290 L~~~~~~~a~~vi~~~~~------~~~n~~~~~~~~~~~---~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~ 360 (453)
T PRK09496 290 LEEEGIDEADAFIALTND------DEANILSSLLAKRLG---AKKVIALVNRPAYVDLVEGLGIDIAISPRQATASEILR 360 (453)
T ss_pred HHhcCCccCCEEEECCCC------cHHHHHHHHHHHHhC---CCeEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHH
Confidence 999999999988765542 344455666667654 34789999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhc-ccCCeEEEeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCC
Q 004328 356 CSRQKGLIKIYRHLLN-YRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIH 434 (761)
Q Consensus 356 ~~~~Pg~~~v~~~Ll~-~~~~ei~v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~ 434 (761)
.+..|++..++..... ....|+.+.+.|+++|++++|+... .++.++|+.|+|++ ++|+++++|++||.|+++++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r~~~~-~~p~~~~~l~~gD~l~v~~~~~ 438 (453)
T PRK09496 361 HVRRGDIVAVHSLRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVRGGEV-IIPTGDTVIEPGDHVIVFVLDK 438 (453)
T ss_pred HhhccchhhhhhhcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEECCEE-EcCCCCcEECCCCEEEEEEcCc
Confidence 9999998765431111 1225667777889999999999543 37999999999997 7899999999999999999998
Q ss_pred C-C
Q 004328 435 G-K 436 (761)
Q Consensus 435 ~-~ 436 (761)
+ +
T Consensus 439 ~~~ 441 (453)
T PRK09496 439 KFV 441 (453)
T ss_pred chH
Confidence 7 5
No 7
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.6e-15 Score=160.68 Aligned_cols=294 Identities=14% Similarity=0.195 Sum_probs=206.6
Q ss_pred ccCCCChhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccccc-cc-c
Q 004328 122 RDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRN-NMQKLREGAQM-QV-L 195 (761)
Q Consensus 122 e~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~-~~~~lr~G~~~-~v-~ 195 (761)
.+...++|.++| |.++|.+|+|||| .-++..+..++++-+.++++..-+ +.+.. .+++-+.|... .- .
T Consensus 212 ~~k~i~lf~s~y--~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~----~~l~~tw~erqk~g~~~ss~~~ 285 (1087)
T KOG3193|consen 212 RGKRIDLFTSFY--FVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL----DELGQTWSERQKSGTDFSSWNG 285 (1087)
T ss_pred cCceeeeeeeEE--EEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH----HHHHHHHHHHhhcCCCcccccc
Confidence 366789999999 6788888999998 446788888887777776665443 22222 23333455421 11 2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHh-hcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN-IAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~-~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
.+.|+|||-..-....+..-|.+.... .- .+ +-.||+++. .+++.-.+- ++-++.+.+|.|++|+....+
T Consensus 286 ~e~hvvv~~ttl~~~~i~dfl~efyah---p~--~q-~~~ivllsp---~eld~~~rmllkiplwnnrvhyv~gs~lrd~ 356 (1087)
T KOG3193|consen 286 VESHVVVTITTLEVEFIRDFLEEFYAH---PE--NQ-RIQIVLLSP---AELDNQTRMLLKIPLWNNRVHYVRGSSLRDE 356 (1087)
T ss_pred ccceEEEEEeeeeHHHHHHHHHHHhcC---cc--cc-cEEEEEech---HHhcchhhhheeccccccceeeecccccccc
Confidence 478999999887665554444332110 00 11 125666643 333321111 124556788999999999999
Q ss_pred HHHhccccccCeEEEecCCC--CCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHH
Q 004328 275 SYERAAANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKL 352 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~~--d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~l 352 (761)
+|+||++..|++++|++... +....|..+++...|++... |++|-.+++..++..-+.+. +..++|.+++.-.+
T Consensus 357 dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfa--pnv~qyvqifr~e~k~hi~~--ae~~icedefkyal 432 (1087)
T KOG3193|consen 357 DLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFA--PNVKQYVQIFRAETKMHIEH--AEVLICEDEFKYAL 432 (1087)
T ss_pred hhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcC--CchHHHhhhhchhhhhhhhh--heeEEehhhHHHHH
Confidence 99999999999999988753 32345778888889999887 46777777777765544443 35699999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcc--------------------cCCeEEEee--CC----CCCCCCHHHHHhh-cC--CeEEE
Q 004328 353 FVQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWS--FP----NLAGIKYRQLRRG-FQ--EAVVC 403 (761)
Q Consensus 353 la~~~~~Pg~~~v~~~Ll~~--------------------~~~ei~v~~--~~----~l~G~t~~e~~~~-~~--~~ivi 403 (761)
+|..|.+||++.++.-|+.- .|+|+|-.. .+ +++|++|.-..+. .+ ++-+|
T Consensus 433 lannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li 512 (1087)
T KOG3193|consen 433 LANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLI 512 (1087)
T ss_pred HhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEE
Confidence 99999999999998877642 257887543 23 7899999887665 33 67889
Q ss_pred EEEECC---eEEecCCCCCcccCCCEEEEEecCC
Q 004328 404 GLYRNG---KIYFHPNDDETLQPTDKILFIAPIH 434 (761)
Q Consensus 404 GI~r~G---~~~lnP~~d~~I~~gD~Livia~~~ 434 (761)
|+.-+| .+.+||.+..++++.|.+|+++-..
T Consensus 513 ~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 513 AVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred EEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 998644 5789999999999999999998664
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.62 E-value=2e-14 Score=167.82 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=114.1
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.+||+||||+|+.|..++++|.+.++ +++++ |.|++..+++.+ . +..+ +.||++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g~-------------~vvvI-d~d~~~~~~~~~-~-----g~~~--i~GD~~~~~~ 473 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAGI-------------PLVVI-ETSRTRVDELRE-R-----GIRA--VLGNAANEEI 473 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHH-C-----CCeE--EEcCCCCHHH
Confidence 37999999999999999999988765 46666 788887877653 1 4444 5799999999
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHH
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 355 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~ 355 (761)
|++|++++|++++++.+++ .++...+.+++..+ ++.+++|+++|+++.+.++.+|+|.|++|++..++.+++
T Consensus 474 L~~a~i~~a~~viv~~~~~------~~~~~iv~~~~~~~--~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~ 545 (558)
T PRK10669 474 MQLAHLDCARWLLLTIPNG------YEAGEIVASAREKR--PDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLE 545 (558)
T ss_pred HHhcCccccCEEEEEcCCh------HHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHH
Confidence 9999999999887766532 22222334455554 578999999999999999999999999999999999999
Q ss_pred HHhcCCHHHH
Q 004328 356 CSRQKGLIKI 365 (761)
Q Consensus 356 ~~~~Pg~~~v 365 (761)
.+.+|+..++
T Consensus 546 ~l~~~~~~~~ 555 (558)
T PRK10669 546 LLETPPAGEV 555 (558)
T ss_pred HhcCCCcccc
Confidence 9999998775
No 9
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.60 E-value=1.2e-14 Score=137.63 Aligned_cols=153 Identities=20% Similarity=0.347 Sum_probs=131.4
Q ss_pred EEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecchhHHHHHHHHh
Q 004328 589 SIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVV 668 (761)
Q Consensus 589 siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~~i~s~vlAq~a 668 (761)
+||+|+.. ++..++|+++++++|.++.+.+.. + .++|+|+.+..+.++++.++.. .+=.-++++|++|.|.|
T Consensus 3 aIIiL~~k----~d~ye~Da~a~lsVLaL~~v~e~~--~-g~vIVE~S~~~t~~LlKsv~G~-~VetV~dv~skL~VQCs 74 (206)
T PF06241_consen 3 AIIILAEK----EDRYESDADAFLSVLALQPVKEGL--S-GHVIVEVSDSDTEQLLKSVSGL-KVETVHDVISKLMVQCS 74 (206)
T ss_pred eEEEeCCC----CCcchhhHHHHHHHhhcccccccC--c-ccEEEEecCCChHHHHHhhcCc-eeeeHHHHHHHHHHHhc
Confidence 79999854 478899999999999999876654 3 5899999999999999887733 22223799999999999
Q ss_pred hcccHHHHHHHhhCCCCCeEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCCEEE
Q 004328 669 ENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLI 748 (761)
Q Consensus 669 ~~~~l~~v~~~ll~~eg~ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD~lI 748 (761)
.+|++..+|+++|+.+-++||++..+.+ .+..|.++... ..+.+++|+.++|+..+||. + +.++.+||+|+
T Consensus 75 RQ~GL~~Iy~~iL~~~k~vf~l~~~P~L----~Gm~y~dvr~~--Fpdav~CGv~r~GkI~fhP~-D--d~vL~e~DklL 145 (206)
T PF06241_consen 75 RQPGLAQIYEDILGFEKNVFNLKRWPQL----DGMKYRDVRRS--FPDAVVCGVKRDGKIVFHPD-D--DYVLREGDKLL 145 (206)
T ss_pred cCccHHHHHHHHhCCCCcEEEEecCccc----CCcCHHHHHhc--CCcceeeeeeeCCeeEECCC-C--CceeecCCEEE
Confidence 9999999999999999999999999876 57899998653 78999999999999999995 4 45899999999
Q ss_pred EEecCCCCCC
Q 004328 749 VISELEGEQP 758 (761)
Q Consensus 749 Vi~~~~~~~~ 758 (761)
||++..+.+|
T Consensus 146 vIa~~~~~~~ 155 (206)
T PF06241_consen 146 VIAPVNGKRP 155 (206)
T ss_pred EEeecCCccc
Confidence 9999987665
No 10
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.8e-13 Score=141.02 Aligned_cols=210 Identities=18% Similarity=0.197 Sum_probs=155.2
Q ss_pred eEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhccccc
Q 004328 501 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSF 580 (761)
Q Consensus 501 ~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a~ 580 (761)
+++|+|-|+.+..+++.|. ..|-.|++++. ++++++... -.....+.++||+++.++|+++|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~---~~g~~Vv~Id~--d~~~~~~~~------~~~~~~~~v~gd~t~~~~L~~agi~----- 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS---EEGHNVVLIDR--DEERVEEFL------ADELDTHVVIGDATDEDVLEEAGID----- 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHH---hCCCceEEEEc--CHHHHHHHh------hhhcceEEEEecCCCHHHHHhcCCC-----
Confidence 6899999999999999996 46778899887 556654320 1124456699999999999999999
Q ss_pred cCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecchhH
Q 004328 581 KDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIM 660 (761)
Q Consensus 581 ~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~~i~ 660 (761)
++| .+++.++.| ..|++..+.+++. .|.| ++|+++.++.+.+.++++|.+ ..|.+...+
T Consensus 66 ~aD-----~vva~t~~d----------~~N~i~~~la~~~---~gv~--~viar~~~~~~~~~~~~~g~~-~ii~Pe~~~ 124 (225)
T COG0569 66 DAD-----AVVAATGND----------EVNSVLALLALKE---FGVP--RVIARARNPEHEKVLEKLGAD-VIISPEKLA 124 (225)
T ss_pred cCC-----EEEEeeCCC----------HHHHHHHHHHHHh---cCCC--cEEEEecCHHHHHHHHHcCCc-EEECHHHHH
Confidence 567 888888764 6677666666542 5664 899999999999999998843 666666777
Q ss_pred HHHHHHHhhcccHHHHHHHhhC-CCCCeEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCc
Q 004328 661 SLVTAQVVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPL 739 (761)
Q Consensus 661 s~vlAq~a~~~~l~~v~~~ll~-~eg~ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~ 739 (761)
+..+++....|.+..++..-.+ .+-.++.+.+.+++ .+.|..|+..+ ...+.+++++++++...+.|.|. +
T Consensus 125 ~~~l~~~i~~p~~~~~~~~~~~~~~~~~~~v~~~~~~----~g~~L~el~~~-~~~~~~vvai~r~~~~~~~p~g~---~ 196 (225)
T COG0569 125 AKRLARLIVTPGALDVLELAGGDAEVIEEKVAEDSPL----AGKTLRELDLR-LPYDVNVIAIKRGGNELIIPRGD---T 196 (225)
T ss_pred HHHHHHHhcCCChheEEeecCCcceEEEEEecCCCcc----CCcCHHHhccc-CCCCcEEEEEecCCCceecCCCC---C
Confidence 9999999999987777664432 12223333333344 45667777632 25788899999987677888653 4
Q ss_pred eecCCCEEEEEecCCC
Q 004328 740 SLTLTDSLIVISELEG 755 (761)
Q Consensus 740 ~~~~gD~lIVi~~~~~ 755 (761)
.+++||+++|++..+.
T Consensus 197 ~l~~gD~l~v~~~~~~ 212 (225)
T COG0569 197 TLEAGDRLIVIGAPEA 212 (225)
T ss_pred EecCCCEEEEEEcHHH
Confidence 9999999999998764
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.51 E-value=8.9e-13 Score=154.76 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=106.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.++|+||||+|+.|..++++|.+.+. ++|++ |.|++..+.+.+ + +..+ ..||+++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvvI-D~d~~~v~~~~~-~-----g~~v--~~GDat~~~~ 456 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANKM-------------RITVL-ERDISAVNLMRK-Y-----GYKV--YYGDATQLEL 456 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCCC-------------CEEEE-ECCHHHHHHHHh-C-----CCeE--EEeeCCCHHH
Confidence 47999999999999999999987655 46766 788888887643 1 4555 4699999999
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHH
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 355 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~ 355 (761)
|++|++++|+++|++.++ |..++..+..+|+.+ ++.+++|+++|+++.+.++.+|+|.|++.....+..+++
T Consensus 457 L~~agi~~A~~vv~~~~d------~~~n~~i~~~~r~~~--p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~ 528 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNE------PEDTMKIVELCQQHF--PHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGR 528 (601)
T ss_pred HHhcCCccCCEEEEEeCC------HHHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHH
Confidence 999999999987776642 456666667777766 578999999999999999999999999887666666655
Q ss_pred HH
Q 004328 356 CS 357 (761)
Q Consensus 356 ~~ 357 (761)
.+
T Consensus 529 ~~ 530 (601)
T PRK03659 529 KT 530 (601)
T ss_pred HH
Confidence 43
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.46 E-value=4.2e-12 Score=149.44 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=106.4
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.++|+||||+|+.|..++++|.+.+. +++++ |.|++..+.+.+ + +.+++ .||+++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvvI-D~d~~~v~~~~~-~-----g~~v~--~GDat~~~~ 456 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSGV-------------KMTVL-DHDPDHIETLRK-F-----GMKVF--YGDATRMDL 456 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCCC-------------CEEEE-ECCHHHHHHHHh-c-----CCeEE--EEeCCCHHH
Confidence 37999999999999999999987655 46666 889988888753 1 55554 699999999
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHH
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 355 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~ 355 (761)
|+++|+++|+.+|++.++ |..++.++..+|+.+ ++.+++|+.+|+++.+.++.+|+|.|++.....+..+++
T Consensus 457 L~~agi~~A~~vvv~~~d------~~~n~~i~~~ar~~~--p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 457 LESAGAAKAEVLINAIDD------PQTSLQLVELVKEHF--PHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGR 528 (621)
T ss_pred HHhcCCCcCCEEEEEeCC------HHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHH
Confidence 999999999988776642 455666777778776 578999999999999999999999998876656666665
Q ss_pred HH
Q 004328 356 CS 357 (761)
Q Consensus 356 ~~ 357 (761)
.+
T Consensus 529 ~~ 530 (621)
T PRK03562 529 LV 530 (621)
T ss_pred HH
Confidence 54
No 13
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.45 E-value=5.5e-13 Score=122.83 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=93.7
Q ss_pred EEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhc
Q 004328 200 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 279 (761)
Q Consensus 200 iII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra 279 (761)
|||||||+.+..++++|.+.+. +++++ |.+++..+++.+. +.. ++.||++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-------------~vvvi-d~d~~~~~~~~~~------~~~--~i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-------------DVVVI-DRDPERVEELREE------GVE--VIYGDATDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-------------EEEEE-ESSHHHHHHHHHT------TSE--EEES-TTSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-------------EEEEE-ECCcHHHHHHHhc------ccc--cccccchhhhHHhhc
Confidence 6999999999999999998432 57766 7888888876642 334 457999999999999
Q ss_pred cccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEc
Q 004328 280 AANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPV 345 (761)
Q Consensus 280 ~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~ 345 (761)
++++|++++++++ .|..++.+++.++++. +..++++++.++++.+.|+.+|+|.|+.|
T Consensus 59 ~i~~a~~vv~~~~------~d~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 59 GIEKADAVVILTD------DDEENLLIALLARELN--PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp TGGCESEEEEESS------SHHHHHHHHHHHHHHT--TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CccccCEEEEccC------CHHHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9999999888764 2677787888888876 46889999999999999999999999876
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.33 E-value=6.8e-12 Score=139.01 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=109.6
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcc
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 577 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~ 577 (761)
.++|++|||||+.+..++++|.+ .|..++++++... + +. ..++ +.++.||++|+++|++++++.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~---~g~~vvVId~d~~-~--~~-------~~~g--~~vI~GD~td~e~L~~AgI~~- 302 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQ---RGQAVTVIVPLGL-E--HR-------LPDD--ADLIPGDSSDSAVLKKAGAAR- 302 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHH---CCCCEEEEECchh-h--hh-------ccCC--CcEEEeCCCCHHHHHhcCccc-
Confidence 47999999999999999999964 4567888875211 1 11 1123 345999999999999999992
Q ss_pred ccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecc
Q 004328 578 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 657 (761)
Q Consensus 578 ~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~ 657 (761)
++ .+++++++ |++|+++.+.+|+++|+ .+||+++.++++.+.++++|++ .+|.++
T Consensus 303 ----A~-----aVI~~t~d----------D~~Nl~ivL~ar~l~p~-----~kIIa~v~~~~~~~~L~~~GaD-~VIsp~ 357 (393)
T PRK10537 303 ----AR-----AILALRDN----------DADNAFVVLAAKEMSSD-----VKTVAAVNDSKNLEKIKRVHPD-MIFSPQ 357 (393)
T ss_pred ----CC-----EEEEcCCC----------hHHHHHHHHHHHHhCCC-----CcEEEEECCHHHHHHHHhcCCC-EEECHH
Confidence 33 67777764 59999999999998776 6999999999999999998865 667677
Q ss_pred hhHHHHHHHHhhccc--HHHHHHHhhC
Q 004328 658 EIMSLVTAQVVENNE--LNEVWKDILN 682 (761)
Q Consensus 658 ~i~s~vlAq~a~~~~--l~~v~~~ll~ 682 (761)
++.+..+++....+. ...+.+.+++
T Consensus 358 ~l~g~~la~~l~g~~I~~~~i~~~~~~ 384 (393)
T PRK10537 358 LLGSELLARTLNGEEIDNDMITSMLFN 384 (393)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence 788999999866555 3333344444
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.12 E-value=2.3e-10 Score=105.31 Aligned_cols=111 Identities=16% Similarity=0.278 Sum_probs=87.3
Q ss_pred EEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcccccc
Q 004328 502 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFK 581 (761)
Q Consensus 502 iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a~~ 581 (761)
++|||||+.+..+++.|.+ .+..+++++. ++++.+.+.. .+ +.++.||+++.++|++++++ +
T Consensus 1 vvI~G~g~~~~~i~~~L~~---~~~~vvvid~--d~~~~~~~~~------~~--~~~i~gd~~~~~~l~~a~i~-----~ 62 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE---GGIDVVVIDR--DPERVEELRE------EG--VEVIYGDATDPEVLERAGIE-----K 62 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH---TTSEEEEEES--SHHHHHHHHH------TT--SEEEES-TTSHHHHHHTTGG-----C
T ss_pred eEEEcCCHHHHHHHHHHHh---CCCEEEEEEC--CcHHHHHHHh------cc--cccccccchhhhHHhhcCcc-----c
Confidence 6899999999999999975 3467999987 4455444321 12 34689999999999999998 3
Q ss_pred CCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCc
Q 004328 582 DGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPS 650 (761)
Q Consensus 582 ~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~ 650 (761)
++ .+++++++ |..|+.+.+.+|++.+. .++++++.++++.+.++++|++
T Consensus 63 a~-----~vv~~~~~----------d~~n~~~~~~~r~~~~~-----~~ii~~~~~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 63 AD-----AVVILTDD----------DEENLLIALLARELNPD-----IRIIARVNDPENAELLRQAGAD 111 (116)
T ss_dssp ES-----EEEEESSS----------HHHHHHHHHHHHHHTTT-----SEEEEEESSHHHHHHHHHTT-S
T ss_pred cC-----EEEEccCC----------HHHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHCCcC
Confidence 34 78888764 59999999999998776 6999999999999999988754
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.98 E-value=1.4e-09 Score=127.39 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcc
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 577 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~ 577 (761)
.++|++|||+|+.++.++++|.+ .|.++++++. ++++.+... +..+..+.||++|+++|++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~---~g~~vvvId~--d~~~~~~~~--------~~g~~~i~GD~~~~~~L~~a~i~-- 480 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLA---AGIPLVVIET--SRTRVDELR--------ERGIRAVLGNAANEEIMQLAHLD-- 480 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHH---CCCCEEEEEC--CHHHHHHHH--------HCCCeEEEcCCCCHHHHHhcCcc--
Confidence 47999999999999999999964 4677999987 556655442 22345699999999999999998
Q ss_pred ccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecc
Q 004328 578 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 657 (761)
Q Consensus 578 ~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~ 657 (761)
++| .+++.+++ |.+|....+.+|..+++ .+||+++.++++.+.++++|++ .+|.++
T Consensus 481 ---~a~-----~viv~~~~----------~~~~~~iv~~~~~~~~~-----~~iiar~~~~~~~~~l~~~Gad-~vv~p~ 536 (558)
T PRK10669 481 ---CAR-----WLLLTIPN----------GYEAGEIVASAREKRPD-----IEIIARAHYDDEVAYITERGAN-QVVMGE 536 (558)
T ss_pred ---ccC-----EEEEEcCC----------hHHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHcCCC-EEEChH
Confidence 344 67776654 36676777778886654 6999999999999999998865 777778
Q ss_pred hhHHHHHHHHhhcccHHH
Q 004328 658 EIMSLVTAQVVENNELNE 675 (761)
Q Consensus 658 ~i~s~vlAq~a~~~~l~~ 675 (761)
+.+++-+++...+|...+
T Consensus 537 ~~~a~~i~~~l~~~~~~~ 554 (558)
T PRK10669 537 REIARTMLELLETPPAGE 554 (558)
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 888888888877776443
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.83 E-value=1.6e-08 Score=119.05 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=97.6
Q ss_pred CCCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhc
Q 004328 497 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 576 (761)
Q Consensus 497 ~~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~ 576 (761)
..++|++|||+|+.+..+++.|.+ .|.++++++. ++++.+...+ .+. ..+.||+++.++|++++++
T Consensus 398 ~~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~------~g~--~v~~GDat~~~~L~~agi~- 463 (601)
T PRK03659 398 DDKPQVIIVGFGRFGQVIGRLLMA---NKMRITVLER--DISAVNLMRK------YGY--KVYYGDATQLELLRAAGAE- 463 (601)
T ss_pred cccCCEEEecCchHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh------CCC--eEEEeeCCCHHHHHhcCCc-
Confidence 346899999999999999999974 5677999987 5566554421 133 4588999999999999999
Q ss_pred cccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEec
Q 004328 577 QNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAA 656 (761)
Q Consensus 577 ~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s 656 (761)
+++ .+|+++|+ |..|+.+...+|+.+|+ .+|+++..++++.+.++++|++ .|+.
T Consensus 464 ----~A~-----~vv~~~~d----------~~~n~~i~~~~r~~~p~-----~~IiaRa~~~~~~~~L~~~Ga~--~vv~ 517 (601)
T PRK03659 464 ----KAE-----AIVITCNE----------PEDTMKIVELCQQHFPH-----LHILARARGRVEAHELLQAGVT--QFSR 517 (601)
T ss_pred ----cCC-----EEEEEeCC----------HHHHHHHHHHHHHHCCC-----CeEEEEeCCHHHHHHHHhCCCC--EEEc
Confidence 344 67777765 48899999999997776 7999999999999999988754 5555
Q ss_pred chhH
Q 004328 657 EEIM 660 (761)
Q Consensus 657 ~~i~ 660 (761)
+.+.
T Consensus 518 e~~e 521 (601)
T PRK03659 518 ETFS 521 (601)
T ss_pred cHHH
Confidence 5433
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.78 E-value=2.8e-08 Score=117.27 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcc
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 577 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~ 577 (761)
..+|++|||+|+.++.+++.|.+ .|..+++++. ++++.+.+++ .+..+ +.||++++++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~------~g~~v--~~GDat~~~~L~~agi~-- 463 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDH--DPDHIETLRK------FGMKV--FYGDATRMDLLESAGAA-- 463 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh------cCCeE--EEEeCCCHHHHHhcCCC--
Confidence 46899999999999999999974 5778999987 5567665531 23344 88999999999999998
Q ss_pred ccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecc
Q 004328 578 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 657 (761)
Q Consensus 578 ~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~ 657 (761)
+++ .+|+++|+ |..|+.+...+|+++|+ .+|+++..+.++.+.++++|++ .+..+
T Consensus 464 ---~A~-----~vvv~~~d----------~~~n~~i~~~ar~~~p~-----~~iiaRa~d~~~~~~L~~~Gad--~v~~e 518 (621)
T PRK03562 464 ---KAE-----VLINAIDD----------PQTSLQLVELVKEHFPH-----LQIIARARDVDHYIRLRQAGVE--KPERE 518 (621)
T ss_pred ---cCC-----EEEEEeCC----------HHHHHHHHHHHHHhCCC-----CeEEEEECCHHHHHHHHHCCCC--EEehh
Confidence 234 67777765 48899999999998776 6899999999999999888754 45444
Q ss_pred hhH-HHHHH
Q 004328 658 EIM-SLVTA 665 (761)
Q Consensus 658 ~i~-s~vlA 665 (761)
..- +..++
T Consensus 519 ~~e~sl~l~ 527 (621)
T PRK03562 519 TFEGALKSG 527 (621)
T ss_pred hHhHHHHHH
Confidence 332 34444
No 19
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.62 E-value=9.2e-08 Score=90.84 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred CeEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 438 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~ 438 (761)
.+|++...++++|++++|+..+.+ +++||||.|+++++++|.|.++|++||.||++|+..+..+
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r~~e~I~SPgPy~vle~gDtlvviG~~~~~~r 152 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEETGLKR 152 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEecCcEecCCCchhhhcCCCEEEEEecchHhHH
Confidence 578899999999999999998866 8999999999999999999999999999999999876654
No 20
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9.5e-07 Score=88.38 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=107.9
Q ss_pred ccCCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 194 VLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 194 v~~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
....+|+++|||+..+..+.+.|...+. .++++ +.+++..+.+... +. .++.||++..
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~~~-------------~~~vi-~~~~~~~~~~~~~------~~--~~~~gd~~~~ 75 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLASGI-------------PVVVI-DSDEDRVELLREL------GL--LVVLGDATRE 75 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHHC------CC--cEEEecCCCH
Confidence 3469999999999999999999987543 46666 5666556554421 22 4567999999
Q ss_pred HHHHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeC-cCcHHHHhhcCCCeEEEchhhHHHH
Q 004328 274 KSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSN-PNTCELLKSLSGLKVEPVENVASKL 352 (761)
Q Consensus 274 ~~L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d-~~~~~~l~~~g~d~Vi~~~~~~~~l 352 (761)
+.|.++++++|+++++...+ +..++..+..++..+ +..+++++..+ ..+.+.+...|++.++++....+..
T Consensus 76 ~~l~~a~~~~a~~vi~~~~~------~~~~~~~~~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~ 147 (212)
T COG1226 76 EVLEAAGIERARAVIVTLSD------DATNVFIVLLARAIN--PELEILARARDLDEAVETLTTVGADEVVPPTFESALL 147 (212)
T ss_pred HHHHhcChhheeEEEEecCC------HHHHHHHHHHHHHHC--CCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHH
Confidence 99999999999998887652 345555555566666 46778999999 6667889999999999998888888
Q ss_pred HHHHHhcCCHHHH
Q 004328 353 FVQCSRQKGLIKI 365 (761)
Q Consensus 353 la~~~~~Pg~~~v 365 (761)
++..+..+.....
T Consensus 148 ~~~~~~~~~~~~~ 160 (212)
T COG1226 148 LARAALVGLGGDS 160 (212)
T ss_pred HHHHHhcccCCch
Confidence 8887766654443
No 21
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.39 E-value=9.1e-07 Score=75.74 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=52.5
Q ss_pred HHHHHHhhhheeec-cCCCChhHHHHHhhheeeecccc-cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 109 SFVVFGGFLFFKFR-DETQSLEDCLWEAWACLISSSTH-LKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR 180 (761)
Q Consensus 109 ~iv~~g~~~~~~~e-~~~~s~~da~w~~~~~~t~~g~g-~~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~ 180 (761)
.++..|++.++.-+ .+..++.||+|+++.++|+.|+| ..|.|+.||+++++.++.|+.+++.+++.+++.+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555554422 34789999999887777555443 23477889999999999999999999999988775
No 22
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.25 E-value=2.7e-06 Score=93.77 Aligned_cols=93 Identities=14% Similarity=0.333 Sum_probs=70.2
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHhhhheeec----cCCCChhHHHHHhhheeeeccccccc---CCcchhhHHHHH
Q 004328 88 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR----DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFIL 160 (761)
Q Consensus 88 ~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~~e----~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l 160 (761)
|--++.++...+..++++++..++++.++.|+... ....|..-++||+ ++|++|+|||| .|..|++++..-
T Consensus 334 lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWa--iVTMTTVGYGDm~P~T~~Gklvas~c 411 (477)
T KOG3713|consen 334 LGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWA--VVTMTTVGYGDMVPVTVLGKLVASLC 411 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhhee--eEEEeeecccCccccccchHHHHHHH
Confidence 34455566666666777777777777776665431 2357788999955 66666777776 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004328 161 AIWGILFYSRLLSTMTEQFRNN 182 (761)
Q Consensus 161 ~l~Gi~~fa~li~~i~~~l~~~ 182 (761)
+++|++++|+=|.+|.+-+..-
T Consensus 412 il~GVLvlAlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 412 ILCGVLVLALPITIIVNNFSMY 433 (477)
T ss_pred HHHhHHHhhcchHhHhhhHHHH
Confidence 9999999999999998887653
No 23
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=98.03 E-value=2.9e-06 Score=70.83 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=45.6
Q ss_pred eEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 376 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 376 ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
|+.+.+.++++|++++|+..+.. ++.++||.|+++ .+.|+++++|++||.|+++|+.+++
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R~~~-~~~p~~~~~l~~gD~l~v~g~~~~i 63 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKRGGE-IIIPDGDTVLQAGDILIVVGDPEDI 63 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEETEE-EES--TT-BE-TTEEEEEEEEHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEECCE-EECCCCCCEECCCCEEEEEECHHHH
Confidence 67777888999999999655433 799999999854 7899999999999999999998654
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.99 E-value=0.0001 Score=81.15 Aligned_cols=231 Identities=16% Similarity=0.144 Sum_probs=156.0
Q ss_pred CCCCCeEEEEeeccCHHHHHHHHhhh----cCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHh
Q 004328 496 LGPKERILLLGWRPDVVEMIEEYDNY----LGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 571 (761)
Q Consensus 496 ~~~~~~iLI~Gw~~~~~~li~eL~~~----~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~ 571 (761)
++..+|+++|----.+..+.+-|.++ ......|++++....+.....+ -.-++-|-+|+++.|....++.|++
T Consensus 284 ~~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~eld~~~rml---lkiplwnnrvhyv~gs~lrd~dl~r 360 (1087)
T KOG3193|consen 284 NGVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAELDNQTRML---LKIPLWNNRVHYVRGSSLRDEDLER 360 (1087)
T ss_pred ccccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHHhcchhhhh---eeccccccceeeecccccccchhhh
Confidence 45678999997765555444444332 2245677887753222111111 1235667899999999999999999
Q ss_pred hhhhccccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcc
Q 004328 572 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSL 651 (761)
Q Consensus 572 a~i~~~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~ 651 (761)
|+++.++ ++.||+-+. ..+...+|+.+++..-.+++..|+ .+--+.+-++++.-.++.+ .
T Consensus 361 a~~~~s~----------acfilsar~--~~~k~a~dehtilrswaikdfapn-----v~qyvqifr~e~k~hi~~a---e 420 (1087)
T KOG3193|consen 361 ANVATSK----------ACFILSARH--VNRKVATDEHTILRSWAIKDFAPN-----VKQYVQIFRAETKMHIEHA---E 420 (1087)
T ss_pred hhhcccc----------hheeeehhh--hccccccchhhHHHHHhhhhcCCc-----hHHHhhhhchhhhhhhhhh---e
Confidence 9998543 577777654 257788999999999999998776 3344556667665555532 2
Q ss_pred eEEecchhHHHHHHHHhhcccHHHHHHHh-------------------hCC-CCCeEEEEec--cccccCCCCCCHHHHH
Q 004328 652 TYIAAEEIMSLVTAQVVENNELNEVWKDI-------------------LNA-EGDEIYVKDI--SLYMKEGENPSFFELS 709 (761)
Q Consensus 652 ~~I~s~~i~s~vlAq~a~~~~l~~v~~~l-------------------l~~-eg~ei~~~~~--~~~~~~~~~~sf~~L~ 709 (761)
.+|+.+++-=.++|+-...|+...+...| .+. .|+|+|-... +++..+.++.||.-..
T Consensus 421 ~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~s 500 (1087)
T KOG3193|consen 421 VLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTS 500 (1087)
T ss_pred eEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhh
Confidence 45666666666777766677766665544 343 4777876443 4555666788888777
Q ss_pred HHH-HhCCeeEEEEEecC---eEEECCCCCCCCceecCCCEEEEEec
Q 004328 710 ERA-HLRREVAIGYVKDN---KKVINPVPKSEPLSLTLTDSLIVISE 752 (761)
Q Consensus 710 ~~a-~~~~~ilIG~~~~~---~~~inP~~~~~~~~~~~gD~lIVi~~ 752 (761)
.-+ ++.|--+||+..++ ...+||.+ ...+++.|.+.-++-
T Consensus 501 fhahk~ygi~li~v~p~~~~~~~~lnpg~---~hi~~~~dt~yym~l 544 (1087)
T KOG3193|consen 501 FHAHKEYGIGLIAVSPDGDTSRMKLNPGS---SHIIQPTDTVYYMGL 544 (1087)
T ss_pred hhhhhhcCeEEEEEcCCCCcceeecCCCc---ccccCCCCeEEEEec
Confidence 666 47898999998764 57899964 348999999887754
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.2e-05 Score=87.01 Aligned_cols=77 Identities=21% Similarity=0.417 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhheeec---------cCCCChhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHH
Q 004328 107 CFSFVVFGGFLFFKFR---------DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLST 174 (761)
Q Consensus 107 ~~~iv~~g~~~~~~~e---------~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~ 174 (761)
.|+..++.+++.|..| ....++.||+||. ++|.+|.|||| .|+.||+++..+.++|+.+|++--|+
T Consensus 240 GFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG--~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 240 GFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWG--VITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhh--heeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccc
Confidence 3455555566666655 2347899999965 55556667776 77899999999999999999988888
Q ss_pred HHHHHHHHHHH
Q 004328 175 MTEQFRNNMQK 185 (761)
Q Consensus 175 i~~~l~~~~~~ 185 (761)
+.+.+.-++++
T Consensus 318 LGSGfALKVQe 328 (654)
T KOG1419|consen 318 LGSGFALKVQE 328 (654)
T ss_pred ccchhhhhhHH
Confidence 88887766655
No 26
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.81 E-value=4.6e-05 Score=68.42 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=56.2
Q ss_pred hcCCCeEEEchhhHHHHHHHHHhcCCHHHHHHHHhcc--------------------cCCeEEEeeCC-CCCCCCHHHHH
Q 004328 336 SLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWSFP-NLAGIKYRQLR 394 (761)
Q Consensus 336 ~~g~d~Vi~~~~~~~~lla~~~~~Pg~~~v~~~Ll~~--------------------~~~ei~v~~~~-~l~G~t~~e~~ 394 (761)
..++|+||+.+++.-.+||+++..||+++++.+|+.. .++|+|....| .++|++|.++.
T Consensus 7 ~~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~~ 86 (101)
T PF03493_consen 7 WKFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEAA 86 (101)
T ss_dssp TTTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHHH
T ss_pred cccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHHH
Confidence 3456899999999999999999999999999998863 13799988876 79999999987
Q ss_pred hh-cC--CeEEEEEE
Q 004328 395 RG-FQ--EAVVCGLY 406 (761)
Q Consensus 395 ~~-~~--~~iviGI~ 406 (761)
.. ++ +++++||+
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 74 43 79999985
No 27
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.73 E-value=1.1e-05 Score=85.03 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhhheeec-----cCCCChhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHH
Q 004328 100 LVVLAVVCFSFVVFGGFLFFKFR-----DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRL 171 (761)
Q Consensus 100 ~~~ll~~~~~iv~~g~~~~~~~e-----~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~l 171 (761)
+.+|++.+|+-+++.+.+.|+.| ....|..|||||+ ++|++|+|||| .|..|++++-+-.++|++.+++=
T Consensus 361 lgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwa--vVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALP 438 (507)
T KOG1545|consen 361 LGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWA--VVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALP 438 (507)
T ss_pred HHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEE--EEEEEeeccccceecccCceehhhHHhhhhheEeccc
Confidence 34444444554444445555554 2347788999965 55556667776 88999999999999999998888
Q ss_pred HHHHHHHHHH
Q 004328 172 LSTMTEQFRN 181 (761)
Q Consensus 172 i~~i~~~l~~ 181 (761)
+.+|++-+.-
T Consensus 439 VPVIVsNFny 448 (507)
T KOG1545|consen 439 VPVIVSNFNY 448 (507)
T ss_pred ccEEEecccc
Confidence 8777776553
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.73 E-value=3.5e-05 Score=85.10 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=151.2
Q ss_pred CCCCeEEEEeecc--CHHHHHHHHhhhcCC--CCEEEEEeCC-ChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHh
Q 004328 497 GPKERILLLGWRP--DVVEMIEEYDNYLGP--GSVLEILSDV-PLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 571 (761)
Q Consensus 497 ~~~~~iLI~Gw~~--~~~~li~eL~~~~~~--gs~v~ii~~~-p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~ 571 (761)
..++||++||-=. .....++.+.+..+. ..+|+.+-.. |+-|.+..++ ..-.+|.|.+|..+++-.|.+
T Consensus 355 hgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfk------rhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFK------RHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHh------hheeeEEEecccccChhhhhh
Confidence 5689999998631 222334444333333 3455555543 5556655552 223678899999999999999
Q ss_pred hhhhccccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhccc----
Q 004328 572 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARN---- 647 (761)
Q Consensus 572 a~i~~~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~---- 647 (761)
.-|+ ++| ++++|+..-. .+|+..|+.|++.+..+++..++ +.+|..+..-.|...+-.+
T Consensus 429 vki~-----~ad-----aclvlankyc--~dpdaedaanimrvisiknys~d-----irvi~qlmqyhnkayllnipswd 491 (1103)
T KOG1420|consen 429 VKIE-----SAD-----ACLVLANKYC--ADPDAEDAANIMRVISIKNYSPD-----IRVITQLMQYHNKAYLLNIPSWD 491 (1103)
T ss_pred eecc-----ccc-----eeeeeccccc--CCCChhhhhhheEEEEeccCCCc-----hhHHHHHHHhhchheeecCCCcc
Confidence 9777 346 8999986432 47889999999999999886666 5677666554443332211
Q ss_pred -CCcceEEecchhHHHHHHHHhhcccHHHHHHHhhCC-------------------CCCeEEEEeccccccCCCCCCHHH
Q 004328 648 -KPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNA-------------------EGDEIYVKDISLYMKEGENPSFFE 707 (761)
Q Consensus 648 -~~~~~~I~s~~i~s~vlAq~a~~~~l~~v~~~ll~~-------------------eg~ei~~~~~~~~~~~~~~~sf~~ 707 (761)
..++|+|+-.|+--..+||...-|+...+...|+.- -|.|+|-...+. ...+++|.+
T Consensus 492 wk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp---~f~g~sfp~ 568 (1103)
T KOG1420|consen 492 WKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSP---AFVGLSFPT 568 (1103)
T ss_pred cccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCH---hhcCCchHH
Confidence 235588888888877889999999988888777641 133444433332 126889999
Q ss_pred HHHHHH-hCCeeEEEE--Eec----CeEEECCCCCCCCceecCCCEEEEEecCC
Q 004328 708 LSERAH-LRREVAIGY--VKD----NKKVINPVPKSEPLSLTLTDSLIVISELE 754 (761)
Q Consensus 708 L~~~a~-~~~~ilIG~--~~~----~~~~inP~~~~~~~~~~~gD~lIVi~~~~ 754 (761)
..+..- +-+-.++++ +.. ....|||. + ..++++|..=..|+.+.
T Consensus 569 a~elcf~klkllllaie~k~een~es~i~inpg-~--h~kiq~~tqgffiaqsa 619 (1103)
T KOG1420|consen 569 ACELCFVKLKLLLLAIEYKDEENRESRILINPG-N--HLKIQEGTQGFFIAQSA 619 (1103)
T ss_pred HHHHHHHHHHHhheeeeeccccCccceeEeCCC-C--CceeccCCceEEEecch
Confidence 888773 344445554 422 35899995 3 35899999877777653
No 29
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.65 E-value=0.00023 Score=87.45 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=40.2
Q ss_pred HHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 131 CLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 180 (761)
Q Consensus 131 a~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~ 180 (761)
|+||+++|+| |+|||| .|..+|+|+++++++|+++|++++|.+++.+.
T Consensus 254 slYwai~Tmt--TVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 254 AIYWSITTMT--TVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred HHHHHHHHHh--hccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6998877765 556665 66789999999999999999999998887664
No 30
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00025 Score=74.37 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeccCCCChhHHHHHhhheeeeccccccc----C-------CcchhhHHHHHHHHHHHH
Q 004328 99 FLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----R-------TRVERVIGFILAIWGILF 167 (761)
Q Consensus 99 ~~~~ll~~~~~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~g~~d----~-------t~~~rl~~~~l~l~Gi~~ 167 (761)
++..+...|++++..|+..|...| ++|++||+|+-|.++ +|.|+|| + .+.-++++++.|+.|+.+
T Consensus 160 l~~i~~~~~~~~i~~gaa~fs~~E--~Wsyfds~YyCFITl--tTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~v 235 (350)
T KOG4404|consen 160 LVLILFTACILLICCGAAMFSSVE--GWSYFDSYYYCFITL--TTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCV 235 (350)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccc--Ccchhhhhheeeeee--eeccccchhhhcchhhhhCCCceehHhHHHHHHHHHH
Confidence 455666777788888888887786 799999999665555 5556666 1 257899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004328 168 YSRLLSTMTEQFRN 181 (761)
Q Consensus 168 fa~li~~i~~~l~~ 181 (761)
++.++-+++=.+..
T Consensus 236 i~a~~NllvLrf~t 249 (350)
T KOG4404|consen 236 IYALLNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHHHHHH
Confidence 98777666554443
No 31
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=8e-05 Score=72.02 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=53.5
Q ss_pred eEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 376 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 376 ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
.+.+.+.|.++|+|++|+...-. ++-||+|+|+++.+++|+.|+.|++||.|++-|++.+.
T Consensus 122 rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRRG~~wi~~Pd~~~~Ir~gDvLIarG~~~g~ 183 (204)
T COG3273 122 RVRVEKGSELAGKTLGELDLATNTGVRVIAIRRGERWIYGPDEDTKIREGDVLIARGTDAGV 183 (204)
T ss_pred EEEecCCCeecccchhhhccccccceEEEEEecCCccccCCCccceeccCCEEEEecchhhH
Confidence 35566788999999999987644 79999999999889999999999999999999988655
No 32
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0012 Score=65.71 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=95.0
Q ss_pred CCCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhc
Q 004328 497 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 576 (761)
Q Consensus 497 ~~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~ 576 (761)
....|+++||||+.+..+...|... +..+.+++. +.++.+.+ +...+..+.||+++.++|.+++++.
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~--~~~~~~~~--------~~~~~~~~~gd~~~~~~l~~a~~~~ 85 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDS--DEDRVELL--------RELGLLVVLGDATREEVLEAAGIER 85 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHH--------HHCCCcEEEecCCCHHHHHhcChhh
Confidence 4679999999999999999999743 446777776 33343332 2222245889999999999999983
Q ss_pred cccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEe-ccccchhcccCCcceEEe
Q 004328 577 QNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVD-SKLGKQIARNKPSLTYIA 655 (761)
Q Consensus 577 ~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~-~~~~~~l~~~~~~~~~I~ 655 (761)
+ . .+++..+. +..++.....++.++|. ..+++...+ ..+.+.+..+|.+ +++.
T Consensus 86 a-----~-----~vi~~~~~----------~~~~~~~~~~~~~~~p~-----~~i~~~~~~~~~~~~~l~~~G~~-~vi~ 139 (212)
T COG1226 86 A-----R-----AVIVTLSD----------DATNVFIVLLARAINPE-----LEILARARDLDEAVETLTTVGAD-EVVP 139 (212)
T ss_pred e-----e-----EEEEecCC----------HHHHHHHHHHHHHHCCC-----CEEEEEeccchHHHHHHHHcCCC-eeec
Confidence 2 2 45554433 47788888888887777 579999988 5555677777754 5665
Q ss_pred cchhHHHHHHHHhhccc
Q 004328 656 AEEIMSLVTAQVVENNE 672 (761)
Q Consensus 656 s~~i~s~vlAq~a~~~~ 672 (761)
.....+..++..+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (212)
T COG1226 140 PTFESALLLARAALVGL 156 (212)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 55555555555544433
No 33
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0022 Score=67.98 Aligned_cols=204 Identities=15% Similarity=0.058 Sum_probs=116.6
Q ss_pred CeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 198 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 198 ~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+.|+|+|-|..+..+++-++.... .+. -.+|+. .+.+..+. .++ ...+-+..-||++...|+
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~----~~~-----f~~vv~--~~qe~~~~--~~~-----~e~~~fh~fdaTs~~rl~ 63 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS----NHN-----FYIVVV--KNQESLIP--KNY-----PETFAFHCFDATSSFRLL 63 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc----Cce-----EEEEEe--echhhccc--ccC-----cceEEEEEeCCccHHHHH
Confidence 468999999999999998876433 121 133333 44332221 111 123444457899998876
Q ss_pred h-ccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCE-EEEEeC--cCcHHHHhhcCCCeEEEchhhHHHHH
Q 004328 278 R-AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPT-IVEVSN--PNTCELLKSLSGLKVEPVENVASKLF 353 (761)
Q Consensus 278 r-a~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~i-Ia~v~d--~~~~~~l~~~g~d~Vi~~~~~~~~ll 353 (761)
. .+-+-.+|+|+.-+ + -++....=++|...+ +..+ |.-.+| ++|.+ ++..-.+ .+...+..++..
T Consensus 64 ~~~n~~~~~Afi~~qd-----~--~et~~i~k~lr~~f~--n~e~ei~~~~~~l~~Nee-~~d~k~~-lid~~~vL~~~F 132 (471)
T COG3400 64 QVLNDEVSDAFIIIQD-----F--KETRIIHKILRTHFK--NMEVEISVKRDELENNEE-NKDEKLI-LIDEFEVLANKF 132 (471)
T ss_pred HHhhhHhhhhheehhh-----H--HHHHHHHHHHHHhcc--CcEEEEEEEeCCCccchh-hccccee-ecchHHHHHHHH
Confidence 4 56666777766543 1 223333344454442 3444 444444 23322 2322222 122223333332
Q ss_pred HHHHhcCCHHHHHHHHhccc-C--CeEEEeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEE
Q 004328 354 VQCSRQKGLIKIYRHLLNYR-K--NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFI 430 (761)
Q Consensus 354 a~~~~~Pg~~~v~~~Ll~~~-~--~ei~v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livi 430 (761)
-.. -|++...=.. ...+ | .|+.+..+|.|+-+.++++++ +...+++++|+|++. -|.++.+|+|||+|+|+
T Consensus 133 ~~~--Lp~I~~tp~~-iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YRN~kll-l~~~slvlqp~D~lLVv 206 (471)
T COG3400 133 ISR--LPNIPSTPRE-IGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYRNDKLL-LSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHh--cCCccccchh-cccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEECCEEE-EeccceEecCCCEEEEe
Confidence 222 1444321111 1112 2 567777788899888888865 457899999999965 59999999999999999
Q ss_pred ecCCCC
Q 004328 431 APIHGK 436 (761)
Q Consensus 431 a~~~~~ 436 (761)
|++.-+
T Consensus 207 G~P~~l 212 (471)
T COG3400 207 GNPEIL 212 (471)
T ss_pred CChHHH
Confidence 998533
No 34
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00039 Score=66.47 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=53.0
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCCEEEEEecCCCCCC
Q 004328 687 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQP 758 (761)
Q Consensus 687 ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD~lIVi~~~~~~~~ 758 (761)
++++...+.+ .+.|.+++..+ +++|.++||+.++++.+++|.|- .++++||.|||+++....++
T Consensus 89 ~~~i~~~s~~----~GksiGdl~ir-q~TGaTIIAI~r~~e~I~SPgPy---~vle~gDtlvviG~~~~~~r 152 (162)
T COG0490 89 WFKIEAGSPF----IGKTIGDLNIR-QNTGATVIAIVRNEEKILSPGPY---TVLEAGDTLVVIGEETGLKR 152 (162)
T ss_pred eeeeecCCcc----cCcchhhcccc-cccCcEEEEEEecCcEecCCCch---hhhcCCCEEEEEecchHhHH
Confidence 6777777765 46788899887 58999999999999999999753 49999999999998776543
No 35
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.87 E-value=0.0029 Score=69.08 Aligned_cols=115 Identities=10% Similarity=0.169 Sum_probs=69.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhheeec-------c------------CCCChhHHHHHhhheeeecccccc
Q 004328 87 LFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR-------D------------ETQSLEDCLWEAWACLISSSTHLK 147 (761)
Q Consensus 87 ~~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~~e-------~------------~~~s~~da~w~~~~~~t~~g~g~~ 147 (761)
.|...+..++..++.++++.-++..++.|++||.+. . +-.+|.+|||++..|.||.|||.-
T Consensus 25 ~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~ 104 (336)
T PF01007_consen 25 LYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSR 104 (336)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSS
T ss_pred HHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCc
Confidence 355555555444444343343445555556665421 1 126899999999999987777652
Q ss_pred ---cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCeEEEEccC
Q 004328 148 ---QRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVN 206 (761)
Q Consensus 148 ---d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~~~~~lr~G~~~~v~~~~HiII~G~~ 206 (761)
+..+.+-++..+-.++|+++.++++|++...+.+ =++ |...+..++|.||+-.+
T Consensus 105 ~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~-R~~tI~FS~~AVI~~~d 161 (336)
T PF01007_consen 105 YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKK-RASTILFSKKAVIAPRD 161 (336)
T ss_dssp EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCC-GGGSEEE-SSEEEEEET
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccc-ccceEEEEeeeEEeecC
Confidence 3556788888888999999999999888765543 111 11235678888888653
No 36
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.70 E-value=0.0069 Score=71.73 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=42.3
Q ss_pred hhHHHHHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 128 LEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 128 ~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
+.-|+||++.++|+ +|||+ .+....+|+++++++|+++||.+||-|+..+.+
T Consensus 295 Y~~aLyw~l~tLst--vG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLST--VGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhh--ccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 44699988887754 55555 456789999999999999999999988877654
No 37
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.67 E-value=0.014 Score=68.52 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=53.0
Q ss_pred CeEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKK 437 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~ 437 (761)
..+.+.+.++++|+|+.|+..+.+ +..+++++|+|+.. +|.+|++|++||.|++.|+.+++.
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R~g~~~-~p~~dtvL~~GD~L~V~G~~e~L~ 282 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRRDGKLL-TVSPDLVLNAGDVVLVVGRRDAVV 282 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEECCEEE-cCCCCCeeCCCCEEEEEECHHHHH
Confidence 356666667899999999998765 79999999999865 699999999999999999997653
No 38
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.0027 Score=67.74 Aligned_cols=94 Identities=14% Similarity=0.303 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhheeec----cCCCChhHHHHHhhheeeeccccccc---CCcchh
Q 004328 82 ARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR----DETQSLEDCLWEAWACLISSSTHLKQ---RTRVER 154 (761)
Q Consensus 82 ~rl~y~~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~~e----~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~r 154 (761)
.-|.|-++.--+. +-.+++.++.+++++.++.||..- ....|+..|||++ .+|.+|.|||| .|..|+
T Consensus 311 RILGYTLKSCASE----LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYT--IVTmTTLGYGDMVp~TIaGK 384 (632)
T KOG4390|consen 311 RILGYTLKSCASE----LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYT--IVTMTTLGYGDMVPSTIAGK 384 (632)
T ss_pred chhhhhHHHHHHH----HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhh--eeeeeeccccccchHHHHHH
Confidence 3566666633321 112333444566666766665432 2346788999955 55556667777 778999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 155 VIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 155 l~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
+|+-+-.+.|++++++-+.+|++-+.+
T Consensus 385 IfGsiCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 385 IFGSICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred HhhhhhcccceEEEeccccEEEechhH
Confidence 999999999999988877777766654
No 39
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.50 E-value=0.017 Score=68.08 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=50.0
Q ss_pred eEEEeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 376 IFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 376 ei~v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
++.+.+.++++|++++|+... +++.++++.|+|+. +.|++++++++||++++++++++.
T Consensus 418 ~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R~g~~-~~p~~~t~L~~GD~l~l~~~~~~l 476 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRLP-RGALIALIIRDGKL-LVPTGSTRLKAGDVLLVLGPERDL 476 (562)
T ss_pred EEEECCCCcccCCCHHHcCCC-CCcEEEEEEECCEE-eCCCCCCeECCCCEEEEEECHHHH
Confidence 455556778999999999542 37999999999995 699999999999999999988755
No 40
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.027 Score=63.28 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCChhHHHHHhhheeeeccccc-ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 124 ETQSLEDCLWEAWACLISSSTHL-KQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 186 (761)
Q Consensus 124 ~~~s~~da~w~~~~~~t~~g~g~-~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~~~~~l 186 (761)
..++|.+|+|++++++||.|||. .|.|..||+++++..++|+-++.+.++-+...+...+.++
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999998877754 4688999999999999999888888887777777666554
No 41
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=95.27 E-value=0.018 Score=47.72 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=38.5
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCCEEEEEecCC
Q 004328 687 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELE 754 (761)
Q Consensus 687 ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD~lIVi~~~~ 754 (761)
|+.+.+.+.+ .+.|..++..+. ..+..++|++++ +..+.|.+ +.++++||.|+++++.+
T Consensus 3 e~~V~~~s~~----~gk~l~el~l~~-~~~~~i~~i~R~-~~~~~p~~---~~~l~~gD~l~v~g~~~ 61 (71)
T PF02080_consen 3 EVRVPENSPL----VGKTLKELDLPE-RYGVRIVAIKRG-GEIIIPDG---DTVLQAGDILIVVGDPE 61 (71)
T ss_dssp EEE--TTBTT----TTEBHHHCTHHC-HHTEEEEEEEET-EEEES--T---T-BE-TTEEEEEEEEHH
T ss_pred EEEECCCCCC----CCCCHHHCCCCc-cCCEEEEEEEEC-CEEECCCC---CCEECCCCEEEEEECHH
Confidence 4555555655 456666654432 359999999777 88888875 34999999999999764
No 42
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=1.1 Score=48.24 Aligned_cols=207 Identities=11% Similarity=0.074 Sum_probs=110.1
Q ss_pred CeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh-hhhccc
Q 004328 500 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT-IMNIQN 578 (761)
Q Consensus 500 ~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a-~i~~~~ 578 (761)
++|+|+|-|..+...++-+.....-+..-+++.. ++|... ..-.--.+.++.=|||+-+.|++. +-+.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~~~~f~~vv~~--~qe~~~-------~~~~~e~~~fh~fdaTs~~rl~~~~n~~~-- 70 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYSNHNFYIVVVK--NQESLI-------PKNYPETFAFHCFDATSSFRLLQVLNDEV-- 70 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhcCceEEEEEee--chhhcc-------cccCcceEEEEEeCCccHHHHHHHhhhHh--
Confidence 5789999999999999888754344444444433 222211 111123466788999999999985 2221
Q ss_pred cccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEE-eccccchhcccCCcceEEecc
Q 004328 579 SFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIV-DSKLGKQIARNKPSLTYIAAE 657 (761)
Q Consensus 579 a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~-~~~~~~~l~~~~~~~~~I~s~ 657 (761)
.+ ++|+.-|. .++..+.-.+|...+++.. .|+.... .+.| +..+.... +.+-..
T Consensus 71 ---~~-----Afi~~qd~-----------~et~~i~k~lr~~f~n~e~---ei~~~~~~l~~N-ee~~d~k~--~lid~~ 125 (471)
T COG3400 71 ---SD-----AFIIIQDF-----------KETRIIHKILRTHFKNMEV---EISVKRDELENN-EENKDEKL--ILIDEF 125 (471)
T ss_pred ---hh-----hheehhhH-----------HHHHHHHHHHHHhccCcEE---EEEEEeCCCccc-hhhcccce--eecchH
Confidence 12 67776553 5566667777776665422 3333333 2333 22222111 222222
Q ss_pred hhHHHHHHHHhhcccHHHHHHHhhCCCCCeEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCC
Q 004328 658 EIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSE 737 (761)
Q Consensus 658 ~i~s~vlAq~a~~~~l~~v~~~ll~~eg~ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~ 737 (761)
+.++...-... |++..-=.+ .+-+--||.-.+.+. |....|.-+..- +++..-+++++|.+...+.- +
T Consensus 126 ~vL~~~F~~~L--p~I~~tp~~-iGLgkGEImEI~vp~----gSifaYrhi~sI-~qk~~RIvl~YRN~klll~~--~-- 193 (471)
T COG3400 126 EVLANKFISRL--PNIPSTPRE-IGLGKGEIMEIDVPF----GSIFAYRHIGSI-RQKEYRIVLLYRNDKLLLST--K-- 193 (471)
T ss_pred HHHHHHHHHhc--CCccccchh-cccccceEEEEecCC----Cchhhhhhhhhh-hhheeEEEEEEECCEEEEec--c--
Confidence 22222211111 111110011 111212554444443 234444455444 36778888888877766633 2
Q ss_pred CceecCCCEEEEEecCC
Q 004328 738 PLSLTLTDSLIVISELE 754 (761)
Q Consensus 738 ~~~~~~gD~lIVi~~~~ 754 (761)
.++++|||+|.|+++.+
T Consensus 194 slvlqp~D~lLVvG~P~ 210 (471)
T COG3400 194 SLVLQPRDILLVVGNPE 210 (471)
T ss_pred ceEecCCCEEEEeCChH
Confidence 57999999999999764
No 43
>PRK03818 putative transporter; Validated
Probab=94.94 E-value=0.025 Score=66.15 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=52.6
Q ss_pred CeEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 438 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~ 438 (761)
.|..+.+.|+++|+|++|+..+.+ ++.+.+|+|+|+ .+.|.+|++|+.||.|.+.|+.+++.+
T Consensus 291 ~E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~g~-~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 291 SERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRAGV-ELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEEcChhccCCcHHHhcccccCCeEEEEEeECCe-ecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 355566788999999999987754 799999999876 456788999999999999999986644
No 44
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=94.79 E-value=0.15 Score=56.56 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=88.3
Q ss_pred HHHHhhhhhhHhhcCCCCCc------cccccCCcCCCCCcccccCCCccccccccHHHHHHH----------HHHHHhhc
Q 004328 32 KIIQDLFPSMVWTLGATGSP------FACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYL----------FNVQLERN 95 (761)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~y~----------~~~~l~~~ 95 (761)
.+.|..+--+ .+++-.+| |.=...+.++-++-+.++.....=.+-. +-|+|.. |....+|.
T Consensus 154 r~~~i~lE~~--vC~i~P~P~~g~~~~~~~~~~~~~~~~~~~~~~vdV~LSipM-fLRlyLv~R~MlLhSk~f~DastRS 230 (489)
T KOG3684|consen 154 RVLQILLELL--VCAICPIPETGEYKWTWLAPLAFSYTPSRVDVPVDVLLSIPM-FLRLYLVCRVMLLHSKQFQDASTRS 230 (489)
T ss_pred HHHHHHHHHH--HhccCCCCCCCceeeEeccchhhccCCCcccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4456666655 56777888 7778888888666666654322111111 2444432 21111222
Q ss_pred hHH-------------------HHHHHHHHHHHHHHHHhhhheeecc------CCCChhHHHHHhhheeeeccccccc--
Q 004328 96 VAT-------------------FLVVLAVVCFSFVVFGGFLFFKFRD------ETQSLEDCLWEAWACLISSSTHLKQ-- 148 (761)
Q Consensus 96 ~~~-------------------~~~~ll~~~~~iv~~g~~~~~~~e~------~~~s~~da~w~~~~~~t~~g~g~~d-- 148 (761)
.++ +...|+++++.+.++.++.+-+-|. ...++.++.|. ..+|.-+.||||
T Consensus 231 IaaLNrI~fn~rFV~Kt~M~~~Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWl--i~iTFlsiGYGDiV 308 (489)
T KOG3684|consen 231 IAALNRINFNFRFVLKTLMTICPGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWL--IAITFLSIGYGDIV 308 (489)
T ss_pred HHHHhcchhhhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHH--HHHHHhhcccCccc
Confidence 111 1234445555555555555544442 33559999994 455555678887
Q ss_pred -CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 149 -RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 180 (761)
Q Consensus 149 -~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~ 180 (761)
.|..||.++++..++|.++-|+++++++-.++
T Consensus 309 P~TycGr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 309 PNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred CCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 77899999999999999999999988887665
No 45
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.77 E-value=0.052 Score=57.47 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=34.8
Q ss_pred cCCCChhHHHHHhhheeeeccccc-ccCCcchhhHHHHHHHHHH
Q 004328 123 DETQSLEDCLWEAWACLISSSTHL-KQRTRVERVIGFILAIWGI 165 (761)
Q Consensus 123 ~~~~s~~da~w~~~~~~t~~g~g~-~d~t~~~rl~~~~l~l~Gi 165 (761)
+..+.|.-|||++.+++|+-|||- .|.|.+||+|.++-.++|+
T Consensus 76 g~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gi 119 (350)
T KOG4404|consen 76 GPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGI 119 (350)
T ss_pred ccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcC
Confidence 556888999998877777666643 4688899999999999888
No 46
>PRK03818 putative transporter; Validated
Probab=94.73 E-value=0.054 Score=63.40 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=52.5
Q ss_pred CeEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKK 437 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~ 437 (761)
.++.+. .|+++|+|+.|+..+.+ +..+.++.|+|+ ...|.+|++|++||.|++.++.+++.
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R~g~-~~~p~~~~~L~~GDiLlV~G~~e~l~ 268 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKRGDT-LMVPSPDTIIQLGDLLHLVGQPEDLH 268 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEECCE-EECCCCCCccCCCCEEEEEECHHHHH
Confidence 467766 77899999999988765 789999999887 56789999999999999999997653
No 47
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.64 E-value=0.077 Score=60.12 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=47.9
Q ss_pred cCCCChhHHHHHhhheeeecccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 123 DETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 123 ~~~~s~~da~w~~~~~~t~~g~g~~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
|.+.++..|+||+..+.|+.|..-.|.|...-+|..+-.+.|+++|+.+||-|=+.+..
T Consensus 399 g~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 399 GEGNEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CCCCceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999887777665554456777778888888899999999999988777654
No 48
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.63 E-value=0.036 Score=65.03 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=52.1
Q ss_pred CeEEEeeCCCCCCCCHHHHHhh-----cCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRG-----FQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 438 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~-----~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~ 438 (761)
.|..+.+.|+++|+|++|+..+ ..++.+.+|+|+|+- +.|.+|++|+.||.|.+.++.+++.+
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~ 371 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRDDQP-LPILPETVLQRGDVVTLVGTPQDVDR 371 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeCCcc-ccCCCCCEecCCCEEEEEeCHHHHHH
Confidence 3445667889999999999865 237999999998874 47899999999999999999876543
No 49
>PRK04972 putative transporter; Provisional
Probab=94.56 E-value=0.034 Score=65.15 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=51.8
Q ss_pred CeEEEeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCC
Q 004328 375 NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 438 (761)
Q Consensus 375 ~ei~v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~ 438 (761)
.|..+.+.++++|+|++|+..+..++.+++|+|+|. .+.|.+|++|+.||.|.+.++.+++.+
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~g~-~~~~~~~~~L~~GD~LlVvG~~~~i~~ 366 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRSQI-EMPIDDNVVLNKGDVLQVSGDARRVKT 366 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEecCCc-ccCCCCCCEecCCCEEEEEECHHHHHH
Confidence 356667788999999999987634799999999654 456888999999999999999876544
No 50
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.31 Score=55.23 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=44.3
Q ss_pred hhHHHHHhhheeeeccccc-ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 128 LEDCLWEAWACLISSSTHL-KQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 128 ~~da~w~~~~~~t~~g~g~-~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
+..++|++++++|+.|+|- .+.|...++|++.+|+.|-++++++.|-++..+.+
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4589998888887766643 45888999999999999999999999977776654
No 51
>PRK04972 putative transporter; Provisional
Probab=93.21 E-value=0.15 Score=59.91 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=45.0
Q ss_pred CCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 385 LAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 385 l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
+.|||++|+..+.. +..+.++.|+|+ ...|.+|++|++||.|++.++.++.
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R~g~-~~~p~~dt~L~~GDiL~V~G~~e~l 279 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRRNGI-LANPDGDAVLQMGDEIALVGYPDAH 279 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEECCE-EecCCCCCEeCCCCEEEEEECHHHH
Confidence 37999999988765 789999999987 4779999999999999999998755
No 52
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=91.68 E-value=0.21 Score=55.14 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=45.3
Q ss_pred eeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 380 WSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 380 ~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
.+..+.+|+..++++. -+.+.+.++.|||+ .++|.+++++++||.+++++.+.+.
T Consensus 420 ~k~~~~ig~~lr~l~~-p~~~~~~~v~Rd~q-~i~p~g~t~l~~gD~l~v~~~~~d~ 474 (574)
T COG3263 420 AKDKWCVGAALRNLRM-PKWTRIAAVFRDGQ-LIHPQGSTRLREGDVLCVIGSERDL 474 (574)
T ss_pred hcCCcccchhhhhccC-CccceeeeEEecCc-eeccCCCceeecCCEEEEEeccccH
Confidence 3455789999988753 23688889999999 5789999999999999999998644
No 53
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=0.3 Score=47.89 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCCEEEEEecCCC
Q 004328 701 ENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 755 (761)
Q Consensus 701 ~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD~lIVi~~~~~ 755 (761)
.+.|.++|.-. -.+|.-+|+++|++.+++||+ + ++.+.+||.||+-+++.+
T Consensus 132 ~gktLg~l~L~-t~tGvrVIAIRRG~~wi~~Pd-~--~~~Ir~gDvLIarG~~~g 182 (204)
T COG3273 132 AGKTLGELDLA-TNTGVRVIAIRRGERWIYGPD-E--DTKIREGDVLIARGTDAG 182 (204)
T ss_pred cccchhhhccc-cccceEEEEEecCCccccCCC-c--cceeccCCEEEEecchhh
Confidence 45677777543 389999999999999999996 3 459999999999996654
No 54
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.46 E-value=0.61 Score=45.41 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=44.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|+.+...++.|.+++. .|+|+++.-.+++.+ + .... + ..+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-------------~V~VIsp~~~~~l~~----l----~~i~--~------~~~~ 62 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-------------FVTVVSPEICKEMKE----L----PYIT--W------KQKT 62 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCccCHHHHh----c----cCcE--E------Eecc
Confidence 47889999999999999999988655 577774332223322 1 1111 1 2466
Q ss_pred HHhccccccCeEEEecCC
Q 004328 276 YERAAANKARAIIILPTK 293 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~ 293 (761)
++.++++.|+.||. +++
T Consensus 63 ~~~~dl~~a~lVia-aT~ 79 (157)
T PRK06719 63 FSNDDIKDAHLIYA-ATN 79 (157)
T ss_pred cChhcCCCceEEEE-CCC
Confidence 77778999995554 543
No 55
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.15 E-value=0.59 Score=45.51 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=28.8
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 534 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~ 534 (761)
..++++|+|+|+.+...++.|.+ .|..|++++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCc
Confidence 35899999999999999999964 57889999753
No 56
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.45 E-value=1 Score=50.54 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHhhheeeeccccccc--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 130 DCLWEAWACLISSSTHLKQ--RTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 130 da~w~~~~~~t~~g~g~~d--~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
-++||+ ++|.+|-|..| .|...-+|.++=+++|+++||+++|-+-+.+.+
T Consensus 186 ~S~YWS--tLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 186 YSLYWS--TLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHH--hhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 489966 55555666654 778899999999999999999999866665554
No 57
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=88.81 E-value=2.2 Score=46.70 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=50.2
Q ss_pred CChhHHHHHhhheeeecccccccCC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCeEEE
Q 004328 126 QSLEDCLWEAWACLISSSTHLKQRT---RVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIV 202 (761)
Q Consensus 126 ~s~~da~w~~~~~~t~~g~g~~d~t---~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~~~~~lr~G~~~~v~~~~HiII 202 (761)
.||.-||-+++.+=||-|||+--.| +.+-+..++-.+.|.++=++++|.+...+ .+-++.. -....++|-||
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKi----arPkKRA-eTl~FS~~AVI 185 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKI----ARPKKRA-ETLIFSDHAVI 185 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhhh-heeeeccceEE
Confidence 5678888877776666666664444 56666777777889888777777665544 3333332 23457899999
Q ss_pred EccC
Q 004328 203 CGVN 206 (761)
Q Consensus 203 ~G~~ 206 (761)
|=-+
T Consensus 186 ~~RD 189 (400)
T KOG3827|consen 186 ALRD 189 (400)
T ss_pred EeeC
Confidence 8643
No 58
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=87.66 E-value=2.4 Score=41.58 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.4
Q ss_pred CChhHHHHHhhheeeeccccccc---C-----CcchhhHH-HHHHHHHHHHHHHHHHHH
Q 004328 126 QSLEDCLWEAWACLISSSTHLKQ---R-----TRVERVIG-FILAIWGILFYSRLLSTM 175 (761)
Q Consensus 126 ~s~~da~w~~~~~~t~~g~g~~d---~-----t~~~rl~~-~~l~l~Gi~~fa~li~~i 175 (761)
.++..++|+++.++| |.|+++ . +..+.++. ..++++++++++.++|+|
T Consensus 144 ~~~~~s~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMT--GEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHT--TTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccc--cCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 678999998877664 444544 2 45677777 556677778889988875
No 59
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=85.89 E-value=3.6 Score=41.87 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..+++|+|.|+.+..-++.|.+.+. .|+|+++...++++++.+. .++.++.|+.. .++|
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga-------------~VtVvsp~~~~~l~~l~~~-------~~i~~~~~~~~-~~dl 67 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA-------------QLRVIAEELESELTLLAEQ-------GGITWLARCFD-ADIL 67 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHHc-------CCEEEEeCCCC-HHHh
Confidence 5689999999999999999988654 6888876666667766542 24666677766 4454
Q ss_pred HhccccccCeEEEecC
Q 004328 277 ERAAANKARAIIILPT 292 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~ 292 (761)
+.++.| ++++
T Consensus 68 -----~~~~lV-i~at 77 (205)
T TIGR01470 68 -----EGAFLV-IAAT 77 (205)
T ss_pred -----CCcEEE-EECC
Confidence 457744 4454
No 60
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.20 E-value=2.2 Score=43.40 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=46.4
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|+.+...++.|.+++. .|+|++....+++.++... ..+.+. ...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-------------~V~VIs~~~~~~l~~l~~~-------~~i~~~------~~~ 62 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-------------HIVVISPELTENLVKLVEE-------GKIRWK------QKE 62 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEcCCCCHHHHHHHhC-------CCEEEE------ecC
Confidence 46789999999999999999998654 5777765444455554431 123322 234
Q ss_pred HHhccccccCeEEEecCCC
Q 004328 276 YERAAANKARAIIILPTKG 294 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~ 294 (761)
++.+++..|+.| |.++++
T Consensus 63 ~~~~~l~~adlV-iaaT~d 80 (202)
T PRK06718 63 FEPSDIVDAFLV-IAATND 80 (202)
T ss_pred CChhhcCCceEE-EEcCCC
Confidence 556667889954 445433
No 61
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.34 E-value=13 Score=41.51 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=83.9
Q ss_pred CeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 198 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 198 ~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
..++|+|.|.++..++..|...+. .+|.+ +++.++..+++...- +.++-+++=|+.+.+.|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d------------~~V~i-AdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD------------GEVTI-ADRSKEKCARIAELI-----GGKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC------------ceEEE-EeCCHHHHHHHHhhc-----cccceeEEecccChHHHH
Confidence 458999999999999999987653 25664 588888888876432 124556788999999998
Q ss_pred hccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCc----HHHHhhcCCCeEEEchhhHHHHH
Q 004328 278 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT----CELLKSLSGLKVEPVENVASKLF 353 (761)
Q Consensus 278 ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~----~~~l~~~g~d~Vi~~~~~~~~ll 353 (761)
++=-+. +.||.+.+.. .+...+++.+. ..++++-...+++. .+..+++|..-|.
T Consensus 64 ~li~~~-d~VIn~~p~~----~~~~i~ka~i~-------~gv~yvDts~~~~~~~~~~~~a~~Agit~v~---------- 121 (389)
T COG1748 64 ALIKDF-DLVINAAPPF----VDLTILKACIK-------TGVDYVDTSYYEEPPWKLDEEAKKAGITAVL---------- 121 (389)
T ss_pred HHHhcC-CEEEEeCCch----hhHHHHHHHHH-------hCCCEEEcccCCchhhhhhHHHHHcCeEEEc----------
Confidence 886555 9887777542 35666655554 24565443333333 2335566643222
Q ss_pred HHHHhcCCHHHHHH
Q 004328 354 VQCSRQKGLIKIYR 367 (761)
Q Consensus 354 a~~~~~Pg~~~v~~ 367 (761)
.+=..||+.+++.
T Consensus 122 -~~G~dPGi~nv~a 134 (389)
T COG1748 122 -GCGFDPGITNVLA 134 (389)
T ss_pred -ccCcCcchHHHHH
Confidence 2346688888764
No 62
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=83.34 E-value=4.9 Score=44.90 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred EEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhc
Q 004328 200 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 279 (761)
Q Consensus 200 iII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra 279 (761)
|+|+|.|..|..+++.|.+.... ..|+ +.+++.+.++++.+.. .+.++.+++-|..+.+.|+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~-----------~~v~-va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF-----------EEVT-VADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE------------EEE-EEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC-----------CcEE-EEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH
Confidence 78999999999999999875431 1344 5689998888876532 145577788999999998887
Q ss_pred cccccCeEEEecC
Q 004328 280 AANKARAIIILPT 292 (761)
Q Consensus 280 ~~~~A~avIIl~~ 292 (761)
++.++.||-++.
T Consensus 65 -~~~~dvVin~~g 76 (386)
T PF03435_consen 65 -LRGCDVVINCAG 76 (386)
T ss_dssp -HTTSSEEEE-SS
T ss_pred -HhcCCEEEECCc
Confidence 888896655554
No 63
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.95 E-value=8.7 Score=39.48 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR 244 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~ 244 (761)
+.-+++|.|+|++|..+++.|.+.+. .+|.++|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~-------------~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG-------------KVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-------------EEEEEEcCCC
Confidence 46799999999999999999987543 5777788766
No 64
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.66 E-value=7 Score=39.78 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCC
Q 004328 499 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 565 (761)
Q Consensus 499 ~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~ 565 (761)
.++++|+|+|+.+..-++.|.+ .|..|+|++..+.++..+.. ..-++.++.|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~l~--------~~~~i~~~~~~~~~ 64 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTLLA--------EQGGITWLARCFDA 64 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHH--------HcCCEEEEeCCCCH
Confidence 4699999999999999999864 57789999986554443322 11246778898873
No 65
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=80.03 E-value=7 Score=46.99 Aligned_cols=80 Identities=16% Similarity=0.458 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhhheeec---------------cCCCChhHHHHHhhheeeeccccc-ccCCcchhhHHHHHHHHH
Q 004328 101 VVLAVVCFSFVVFGGFLFFKFR---------------DETQSLEDCLWEAWACLISSSTHL-KQRTRVERVIGFILAIWG 164 (761)
Q Consensus 101 ~~ll~~~~~iv~~g~~~~~~~e---------------~~~~s~~da~w~~~~~~t~~g~g~-~d~t~~~rl~~~~l~l~G 164 (761)
+..+++|+.+.++..++|=|+. |...++..|+|.-|..+..-++-. .+..+.+|+...+-.+++
T Consensus 568 VmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFa 647 (1258)
T KOG1053|consen 568 VMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFA 647 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHH
Confidence 3445555555555555554442 446889999999999887766644 357788999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004328 165 ILFYSRLLSTMTEQFR 180 (761)
Q Consensus 165 i~~fa~li~~i~~~l~ 180 (761)
+++++..++-++..+.
T Consensus 648 vifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 648 VIFLASYTANLAAFMI 663 (1258)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999888877666543
No 66
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.97 E-value=7.1 Score=37.37 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=46.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCC--hhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 198 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 198 ~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~--~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
++++|.|.+. .|..++++|...+. ..|++..++ .+..+++.++.... +.++.+..+|.++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-------------~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-------------RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-------------EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-------------eEEEEeeeccccccccccccccccc--ccccccccccccccc
Confidence 3789999765 89999999988633 234444555 55566665554322 467778889999998
Q ss_pred HHHhcc
Q 004328 275 SYERAA 280 (761)
Q Consensus 275 ~L~ra~ 280 (761)
.++++-
T Consensus 66 ~~~~~~ 71 (167)
T PF00106_consen 66 SIRALI 71 (167)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 877653
No 67
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=79.83 E-value=7.6 Score=41.10 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|-|.+. .|..++++|.+.+. +++++ .++++.++++.+++.... +..+.++..|-++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-------------~liLv-aR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~ 69 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-------------NLILV-ARREDKLEALAKELEDKT-GVEVEVIPADLSDPE 69 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCcHHHHHHHHHHHHHhh-CceEEEEECcCCChh
Confidence 467999999876 89999999988654 45555 688999999887763332 677878899999999
Q ss_pred HHHhccc
Q 004328 275 SYERAAA 281 (761)
Q Consensus 275 ~L~ra~~ 281 (761)
++++.--
T Consensus 70 ~~~~l~~ 76 (265)
T COG0300 70 ALERLED 76 (265)
T ss_pred HHHHHHH
Confidence 8888664
No 68
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=79.51 E-value=4.3 Score=38.30 Aligned_cols=56 Identities=13% Similarity=0.351 Sum_probs=39.1
Q ss_pred CChhHHHHHhhheeeecccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 126 QSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 126 ~s~~da~w~~~~~~t~~g~g~~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
.++.+++|.++.+++..+....+.+..+|++.++..++.+++.+...|.+++.+..
T Consensus 43 ~~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34778888777666544444556778999999999999998888888888887654
No 69
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=78.57 E-value=9 Score=37.44 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=50.1
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
|+|.|. |..|..++++|.+.++ .|+.++ ++++..++ ..++-.+.||..+++.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------------~V~~~~-R~~~~~~~----------~~~~~~~~~d~~d~~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------------EVTALV-RSPSKAED----------SPGVEIIQGDLFDPDSVKA 56 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------------EEEEEE-SSGGGHHH----------CTTEEEEESCTTCHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------------EEEEEe-cCchhccc----------ccccccceeeehhhhhhhh
Confidence 689995 8899999999998765 577675 45554543 1224446899999988887
Q ss_pred ccccccCeEEEecCC
Q 004328 279 AAANKARAIIILPTK 293 (761)
Q Consensus 279 a~~~~A~avIIl~~~ 293 (761)
+ +..+++|+.+...
T Consensus 57 a-l~~~d~vi~~~~~ 70 (183)
T PF13460_consen 57 A-LKGADAVIHAAGP 70 (183)
T ss_dssp H-HTTSSEEEECCHS
T ss_pred h-hhhcchhhhhhhh
Confidence 5 4489988876653
No 70
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=77.75 E-value=17 Score=32.56 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=53.0
Q ss_pred cceEEecchhHHHHHHHHhhcccHHHHHHHhhCC-C-------------------CCeEEEEeccccccCCCCCCHHHHH
Q 004328 650 SLTYIAAEEIMSLVTAQVVENNELNEVWKDILNA-E-------------------GDEIYVKDISLYMKEGENPSFFELS 709 (761)
Q Consensus 650 ~~~~I~s~~i~s~vlAq~a~~~~l~~v~~~ll~~-e-------------------g~ei~~~~~~~~~~~~~~~sf~~L~ 709 (761)
++++|.-+++--.+|||...-|++.++...|+.. . ++|||-.+.+... .+.+|.++.
T Consensus 10 ~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f---~G~~F~~~~ 86 (101)
T PF03493_consen 10 ADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAF---VGMTFTEAA 86 (101)
T ss_dssp T-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGG---TTSBHHHHH
T ss_pred CceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhh---CCCcHHHHH
Confidence 3488888899999999999999999999988863 1 2357776765533 689999999
Q ss_pred HHHH-hCCeeEEEEE
Q 004328 710 ERAH-LRREVAIGYV 723 (761)
Q Consensus 710 ~~a~-~~~~ilIG~~ 723 (761)
.... +.|.++||+.
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 8774 5899999974
No 71
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.06 E-value=8 Score=37.77 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.-.+++|||||..|..+++.|+..+.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga 47 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA 47 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC
Confidence 35689999999999999999987543
No 72
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.89 E-value=25 Score=38.10 Aligned_cols=119 Identities=14% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|..|..+++.|...+. ..|++ .+++++..+++.+.+ +..++ ..++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~------------~~V~v-~~r~~~ra~~la~~~-----g~~~~-------~~~~ 231 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV------------AEITI-ANRTYERAEELAKEL-----GGNAV-------PLDE 231 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC------------CEEEE-EeCCHHHHHHHHHHc-----CCeEE-------eHHH
Confidence 36789999999999999999876432 24554 477777666666544 22221 2344
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHH-HHhhcCCCeEEEchhh
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENV 348 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~-~l~~~g~d~Vi~~~~~ 348 (761)
+..+ +.+|+.||. ++..+ +. .+.+...+..+ . ++..+++-+..|.+.+ ......+-.++..+++
T Consensus 232 ~~~~-l~~aDvVi~-at~~~--~~-~~~~~~~~~~~--~--~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl 296 (311)
T cd05213 232 LLEL-LNEADVVIS-ATGAP--HY-AKIVERAMKKR--S--GKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDL 296 (311)
T ss_pred HHHH-HhcCCEEEE-CCCCC--ch-HHHHHHHHhhC--C--CCCeEEEEeCCCCCCchhhccCCCcEEEEHHHh
Confidence 5443 567896554 44333 11 22233333311 1 1234688888887754 3444444456666653
No 73
>COG2985 Predicted permease [General function prediction only]
Probab=76.86 E-value=2.2 Score=48.03 Aligned_cols=57 Identities=30% Similarity=0.451 Sum_probs=44.3
Q ss_pred eCCCCCCCCHHHHHhhcCCeEEE-EEEECCeEEecCCCCCcccCCCEEEEEecCCCCCC
Q 004328 381 SFPNLAGIKYRQLRRGFQEAVVC-GLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 438 (761)
Q Consensus 381 ~~~~l~G~t~~e~~~~~~~~ivi-GI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~ 438 (761)
..|++.|++++|+-....+.++| -++||| ...+|++|++++.||.+.++|.++...+
T Consensus 210 ~~p~~~g~~l~d~p~l~~~~v~~sRikrd~-~~~~p~~~~~i~~Gd~l~lVG~~~~l~r 267 (544)
T COG2985 210 VNPNLDGLNLRDLPILRQEGVYCSRIKRDG-ILAVPDPDTIIQVGDELHLVGYPDALAR 267 (544)
T ss_pred cCCCccccchhhcccccCCceEEEEEecCC-eeecCCCCcccccCcEEEecCChHHHHH
Confidence 46889999999987654443444 455565 4789999999999999999999976644
No 74
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=76.21 E-value=0.45 Score=53.32 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=40.8
Q ss_pred HHHHHHHhhhheeeccCCCChhHHHHHhhheeeeccccccc---CCcchh--------hHHHHHHHHHHHHHHHHH
Q 004328 108 FSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ---RTRVER--------VIGFILAIWGILFYSRLL 172 (761)
Q Consensus 108 ~~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~r--------l~~~~l~l~Gi~~fa~li 172 (761)
++.+..|+..+...| +++|++|||++|+++ +|.|+|| .+..++ .+..+.++.|...++...
T Consensus 225 ~~~~~~~~~~~~~~e--~w~f~~~~Yf~fisl--tTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 225 LVYLSPGSLLFSLQE--QWSFIEAFYFSFISL--TTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred EEEecccceeeecee--ceeeEeeeeEEEEEe--eeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 344555665565565 499999999665555 5566777 344444 577778888888877666
No 75
>PRK06194 hypothetical protein; Provisional
Probab=73.74 E-value=15 Score=38.70 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=52.5
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ -.|..++++|.+.+. .|+++ +++.+.+++..+..... +.++.++.+|.++.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~ 69 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-------------KLVLA-DVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQ 69 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-------------EEEEE-eCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence 4678999975 589999999987544 45555 66665555554433111 4467778999999998
Q ss_pred HHhccc------cccCeEEEecC
Q 004328 276 YERAAA------NKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~~ 292 (761)
++++-- ..-+.+|-++.
T Consensus 70 ~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 70 VEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 877532 13475555443
No 76
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=73.60 E-value=12 Score=37.07 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=44.0
Q ss_pred eEEEEc-cCccHHHHHHHHHhcccccccccccccCcceEEEEeCC--ChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 199 HIIVCG-VNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 199 HiII~G-~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~--~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.++|.| .|..+..+++.|..... ..++++... +..+.++..++... .+.+|.++..|.++++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~------------~~~il~~r~~~~~~~~~~~i~~l~~--~g~~v~~~~~Dv~d~~~ 67 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA------------RRLILLGRSGAPSAEAEAAIRELES--AGARVEYVQCDVTDPEA 67 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------------SEEEEEESSGGGSTTHHHHHHHHHH--TT-EEEEEE--TTSHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCC------------CEEEEeccCCCccHHHHHHHHHHHh--CCCceeeeccCccCHHH
Confidence 477887 67799999999987544 368877655 22233333333312 26789999999999999
Q ss_pred HHhcc
Q 004328 276 YERAA 280 (761)
Q Consensus 276 L~ra~ 280 (761)
++++-
T Consensus 68 v~~~~ 72 (181)
T PF08659_consen 68 VAAAL 72 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88873
No 77
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.32 E-value=16 Score=38.07 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+++.+.. +.++.++.+|.++++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-------------RVAIV-DIDADNGAAVAASL-----GERARFIATDITDDAA 66 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCeeEEEEecCCCHHH
Confidence 5678899974 589999999987654 45544 67766666655432 3356677899999988
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 67 ~~~~ 70 (261)
T PRK08265 67 IERA 70 (261)
T ss_pred HHHH
Confidence 7664
No 78
>PRK09186 flagellin modification protein A; Provisional
Probab=72.86 E-value=15 Score=37.86 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .++++ .++++..+++.+.....+.+..+.++.+|.++++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~ 69 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-------------IVIAA-DIDKEALNELLESLGKEFKSKKLSLVELDITDQES 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHH
Confidence 4678899975 589999999987654 45544 56666666554433111112234456788888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 70 ~~~~ 73 (256)
T PRK09186 70 LEEF 73 (256)
T ss_pred HHHH
Confidence 7654
No 79
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=72.59 E-value=9.4 Score=38.75 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhH
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDD 538 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~e 538 (761)
..+++||+|.|+.+...++.|.+ .|..|++++....++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~~~~ 46 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPELTEN 46 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCCCHH
Confidence 35799999999999999999964 467899998644333
No 80
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=72.57 E-value=16 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=33.9
Q ss_pred EEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 004328 200 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 254 (761)
Q Consensus 200 iII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~ 254 (761)
|-|+|.|+.+..+++.|...+. ...+|.+.++++++..+++.+++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~----------~~~~v~~~~~r~~~~~~~~~~~~ 46 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGI----------KPHEVIIVSSRSPEKAAELAKEY 46 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-----------GGEEEEEEESSHHHHHHHHHHC
T ss_pred EEEECCCHHHHHHHHHHHHCCC----------CceeEEeeccCcHHHHHHHHHhh
Confidence 6688999999999999987651 01256666688888888877654
No 81
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.45 E-value=19 Score=36.75 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+..+++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+.... .+.++.++.+|.++++
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-------------NVGLL-ARTEENLKAVAEEVEA--YGVKVVIATADVSDYE 69 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHH
Confidence 35789999976 488999999987543 45554 6666555554433211 1345777789999998
Q ss_pred HHHhccc------cccCeEEEec
Q 004328 275 SYERAAA------NKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~------~~A~avIIl~ 291 (761)
.++++-- ...+.+|..+
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 70 EVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred HHHHHHHHHHHHcCCccEEEEcC
Confidence 8766422 2567655544
No 82
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.25 E-value=18 Score=37.94 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=49.9
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|+|.+ -.|..++++|.+.+. .|+++ .++++..+++.+.......+.++.++.+|.++++.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 68 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-------------LVIAT-MRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNS 68 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHH
Confidence 4578999974 589999999987544 45555 56665555543322111112356677899999988
Q ss_pred HHhc-----cccccCeEEEec
Q 004328 276 YERA-----AANKARAIIILP 291 (761)
Q Consensus 276 L~ra-----~~~~A~avIIl~ 291 (761)
+++. .....+.+|-.+
T Consensus 69 ~~~~~~~~~~~~~id~vv~~a 89 (280)
T PRK06914 69 IHNFQLVLKEIGRIDLLVNNA 89 (280)
T ss_pred HHHHHHHHHhcCCeeEEEECC
Confidence 8751 112456555544
No 83
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=71.45 E-value=68 Score=32.38 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
...+++|.|+|+.|..+++.|.+.+. .|+ ++|.+++.++.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-------------~Vv-v~D~~~~~~~~~~~ 69 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGA-------------KLI-VADINEEAVARAAE 69 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEE-EEcCCHHHHHHHHH
Confidence 34679999999999999999987654 465 56888777776654
No 84
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=71.03 E-value=22 Score=36.48 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+. .|..++++|...+. .++++..++++..+++.+... + .+.++.++.+|.++++
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~D~~~~~ 69 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGA-------------KVVINYNSSKEAAENLVNELG-K-EGHDVYAVQADVSKVE 69 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-------------EEEEEcCCcHHHHHHHHHHHH-h-cCCeEEEEECCCCCHH
Confidence 357899999654 89999999987544 455444444555554433321 1 1346777899999998
Q ss_pred HHHhccc------cccCeEEEec
Q 004328 275 SYERAAA------NKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~------~~A~avIIl~ 291 (761)
.+.++-- .+.+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (247)
T PRK12935 70 DANRLVEEAVNHFGKVDILVNNA 92 (247)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 8876532 2356655444
No 85
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=70.72 E-value=19 Score=37.39 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=44.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++...+++..+.+.+.... ..+.++.++.+|.++++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~ 73 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-------------NIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPET 73 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHH
Confidence 45788889865 79999999997654 4655544556556554433211 113456677788888776
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 74 ~~~~ 77 (260)
T PRK08416 74 YKEL 77 (260)
T ss_pred HHHH
Confidence 6554
No 86
>PRK08251 short chain dehydrogenase; Provisional
Probab=70.57 E-value=20 Score=36.70 Aligned_cols=80 Identities=8% Similarity=0.106 Sum_probs=50.5
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|.+ ..|..++++|.+.+. .++++ +++++..+++.........+.++.++.+|.++++.+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 68 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-------------DLALC-ARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQV 68 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHH
Confidence 468899965 488999999987543 45555 566665655544332222245677788999998877
Q ss_pred Hhcc------ccccCeEEEec
Q 004328 277 ERAA------ANKARAIIILP 291 (761)
Q Consensus 277 ~ra~------~~~A~avIIl~ 291 (761)
.++- ...-+.+|..+
T Consensus 69 ~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 69 FEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 6532 23456555544
No 87
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.50 E-value=18 Score=37.65 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .++++ +++++..+++.+.+... +.++.++.+|.++++.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-------------TIVFN-DINQELVDKGLAAYREL--GIEAHGYVCDVTDEDG 73 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 46788999864 88999999987554 56655 66666666655443211 3457777899999988
Q ss_pred HHhcc
Q 004328 276 YERAA 280 (761)
Q Consensus 276 L~ra~ 280 (761)
++++-
T Consensus 74 ~~~~~ 78 (265)
T PRK07097 74 VQAMV 78 (265)
T ss_pred HHHHH
Confidence 77644
No 88
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=70.50 E-value=69 Score=28.74 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=47.7
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
++.|+|.|..+...+..+...... -.++-+.|.+++..+...+.+ +.. . .++.+.|..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~-----------~~v~~v~d~~~~~~~~~~~~~-----~~~-~-----~~~~~~ll~ 59 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPD-----------FEVVAVCDPDPERAEAFAEKY-----GIP-V-----YTDLEELLA 59 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTT-----------EEEEEEECSSHHHHHHHHHHT-----TSE-E-----ESSHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCC-----------cEEEEEEeCCHHHHHHHHHHh-----ccc-c-----hhHHHHHHH
Confidence 578999999999999888875321 256667788888887766544 444 2 133555544
Q ss_pred ccccccCeEEEecCC
Q 004328 279 AAANKARAIIILPTK 293 (761)
Q Consensus 279 a~~~~A~avIIl~~~ 293 (761)
.. +.+.|+|.+++
T Consensus 60 ~~--~~D~V~I~tp~ 72 (120)
T PF01408_consen 60 DE--DVDAVIIATPP 72 (120)
T ss_dssp HT--TESEEEEESSG
T ss_pred hh--cCCEEEEecCC
Confidence 33 78888887754
No 89
>CHL00194 ycf39 Ycf39; Provisional
Probab=70.44 E-value=26 Score=37.89 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=42.0
Q ss_pred eEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 501 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 501 ~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+|+|.|. |..|..++++|.+ .|.+|+.+...+ ++...+ ....+.++.||.+|.+.|.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~l--------~~~~v~~v~~Dl~d~~~l~~a 61 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASFL--------KEWGAELVYGDLSLPETLPPS 61 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhhH--------hhcCCEEEECCCCCHHHHHHH
Confidence 5899996 6789999999964 577888887632 211111 112356699999999999886
No 90
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=69.91 E-value=26 Score=44.23 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCeEEEEccCccHHHHHHHHHhccccccc-ccccccC-cceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVR-LGTATAR-KQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~r-lg~~~~~-~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..+|+|+|.|..+...++-|...... + .|...+. ....|.++|.+.+..+++.+.+ .+ +-.+.-|.++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~--~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~--~~~v~lDv~D~e 640 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTI--SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----EN--AEAVQLDVSDSE 640 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCc--cccccccccccccEEEEECCCHHHHHHHHHhc----CC--CceEEeecCCHH
Confidence 66899999999999999999753210 0 0100000 1124566788887777776543 12 223466788888
Q ss_pred HHHhccccccCeEEEecCC
Q 004328 275 SYERAAANKARAIIILPTK 293 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~ 293 (761)
.|.++ ++.+++||++.+.
T Consensus 641 ~L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred HHHHh-hcCCCEEEECCCc
Confidence 88775 4459988887764
No 91
>PRK07024 short chain dehydrogenase; Provisional
Probab=69.77 E-value=20 Score=37.22 Aligned_cols=65 Identities=8% Similarity=0.121 Sum_probs=45.4
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|.+ -.|..++++|.+.+. .++++ +++++.++++.+..... + ++.++.+|.++++.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i 65 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-------------TLGLV-ARRTDALQAFAARLPKA--A-RVSVYAADVRDADAL 65 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHH
Confidence 579999965 489999999987543 46555 67676666655433211 2 577788999998887
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 66 ~~~ 68 (257)
T PRK07024 66 AAA 68 (257)
T ss_pred HHH
Confidence 664
No 92
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.50 E-value=22 Score=36.36 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=44.6
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.-++|.|. |..|..++++|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++++.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~ 70 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW-------------DLALV-ARSQDALEALAAELRST--GVKAAAYSIDLSNPEAI 70 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHH
Confidence 45788886 5689999999987543 45555 67766666554433111 34566778999999887
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
.++
T Consensus 71 ~~~ 73 (241)
T PRK07454 71 APG 73 (241)
T ss_pred HHH
Confidence 664
No 93
>PRK07063 short chain dehydrogenase; Provisional
Probab=69.23 E-value=22 Score=36.82 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=46.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++++..+++.+.......+.++.+..+|.++++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------------~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------------AVALA-DLDAALAERAAAAIARDVAGARVLAVPADVTDAAS 72 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHH
Confidence 46789999764 78999999987554 45554 67776666655443221123456677889998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 73 ~~~~ 76 (260)
T PRK07063 73 VAAA 76 (260)
T ss_pred HHHH
Confidence 7654
No 94
>PRK06924 short chain dehydrogenase; Provisional
Probab=68.98 E-value=18 Score=37.27 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=41.8
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
++++|.|. |..|..++++|.+.+. .|++++..+.+.++++.+.. +.++.+..+|.++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-------------~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~ 63 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-------------HVISISRTENKELTKLAEQY-----NSNLTFHSLDLQDVHEL 63 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-------------EEEEEeCCchHHHHHHHhcc-----CCceEEEEecCCCHHHH
Confidence 47899996 4589999999987544 56666433334455443321 33455667888888777
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 64 ~~~ 66 (251)
T PRK06924 64 ETN 66 (251)
T ss_pred HHH
Confidence 654
No 95
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.75 E-value=25 Score=35.91 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|. +..|..++++|.+.+. .++++ +++++..+++.+..... +.++.+..+|.++++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-------------TVAFN-DGLAAEARELAAALEAA--GGRAHAIAADLADPA 69 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHH
Confidence 4578999997 5689999999987654 46655 56666555544332111 335666789999998
Q ss_pred HHHhccc------cccCeEEEec
Q 004328 275 SYERAAA------NKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~------~~A~avIIl~ 291 (761)
.++++-- ...+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 70 SVQRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 8776432 3567665544
No 96
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.42 E-value=25 Score=36.30 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|. +..|..++++|.+.+. .|+++ +++++..+++.+.... . +.++.++.+|.++++
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~i~~-~-~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-------------EVILN-GRDPAKLAAAAESLKG-Q-GLSAHALAFDVTDHD 72 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHh-c-CceEEEEEccCCCHH
Confidence 3568889997 4589999999987544 46554 6766666555443311 1 345677789999988
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 73 ~~~~~ 77 (255)
T PRK07523 73 AVRAA 77 (255)
T ss_pred HHHHH
Confidence 87765
No 97
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.28 E-value=24 Score=36.31 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 70 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-------------KVVVA-DRDAAGGEETVALIREA--GGEALFVACDVTRDAE 70 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 4688999975 589999999987543 45555 66666665544333111 3456677899998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 71 i~~~ 74 (253)
T PRK06172 71 VKAL 74 (253)
T ss_pred HHHH
Confidence 7664
No 98
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=67.28 E-value=28 Score=38.34 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=23.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-||+|+|.|..|..+++.|...+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv 48 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI 48 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 47799999999999999999998765
No 99
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.26 E-value=23 Score=38.66 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....++|.|.+. .|..++++|.+.+. .|+++ .++++.++++.++... .+.++.++.+|.++++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-------------~Vvl~-~R~~~~l~~~~~~l~~--~g~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-------------KVVLL-ARGEEGLEALAAEIRA--AGGEALAVVADVADAE 70 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHH--cCCcEEEEEecCCCHH
Confidence 356788999754 89999999987654 46655 6777666665543311 1456777889999999
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 71 ~v~~~ 75 (334)
T PRK07109 71 AVQAA 75 (334)
T ss_pred HHHHH
Confidence 88776
No 100
>PRK08643 acetoin reductase; Validated
Probab=67.21 E-value=25 Score=36.27 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=49.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|.+. .|..+++.|.+.+. .|+++ +++++..+++..+... .+.++.++.+|.++++.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------------KVAIV-DYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQV 66 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHH
Confidence 5788889764 78999999987543 45555 6666555555443311 134566778999998876
Q ss_pred Hhccc------cccCeEEEec
Q 004328 277 ERAAA------NKARAIIILP 291 (761)
Q Consensus 277 ~ra~~------~~A~avIIl~ 291 (761)
+++-- .+-+.+|-.+
T Consensus 67 ~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 65322 2456555444
No 101
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.07 E-value=23 Score=33.32 Aligned_cols=121 Identities=14% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|..+..++..|...+. ..|.|+ .++.+..+++.+.+ . +..+-+.. .++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~------------~~i~i~-nRt~~ra~~l~~~~-~---~~~~~~~~-----~~~ 68 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA------------KEITIV-NRTPERAEALAEEF-G---GVNIEAIP-----LED 68 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS------------SEEEEE-ESSHHHHHHHHHHH-T---GCSEEEEE-----GGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC------------CEEEEE-ECCHHHHHHHHHHc-C---ccccceee-----HHH
Confidence 58999999999999999999988654 357765 68888888887765 1 22222221 233
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHH-HHhhcCCCeEEEchhh
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENV 348 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~-~l~~~g~d~Vi~~~~~ 348 (761)
+. ....+|+ +||.++.........+.+ . ... ....++.-+.-|.+.+ .+....+-.++..+++
T Consensus 69 ~~-~~~~~~D-ivI~aT~~~~~~i~~~~~----~--~~~--~~~~~v~Dla~Pr~i~~~v~~~~~v~~~~~d~l 132 (135)
T PF01488_consen 69 LE-EALQEAD-IVINATPSGMPIITEEML----K--KAS--KKLRLVIDLAVPRDIDPEVAELPGVRLYDLDDL 132 (135)
T ss_dssp HC-HHHHTES-EEEE-SSTTSTSSTHHHH----T--TTC--HHCSEEEES-SS-SB-TTCGGSTTECCEEHHHH
T ss_pred HH-HHHhhCC-eEEEecCCCCcccCHHHH----H--HHH--hhhhceeccccCCCCChhhcccCCeEEEEhhhc
Confidence 33 3366788 455555432111112211 1 111 0124777776676654 3455444456665554
No 102
>PLN02780 ketoreductase/ oxidoreductase
Probab=67.07 E-value=60 Score=35.28 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCC
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLT 271 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~ 271 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.++....+.+.++.....|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-------------~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-------------NLVLV-ARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 46788899865 88999999987544 46554 6788777776554322221234444455544
No 103
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.92 E-value=32 Score=35.39 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=51.7
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|.+ ..|..++++|...+. .++++ .++++..+++.+.... .+.++.++.+|.++++.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 66 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------------NVIAG-VQIAPQVTALRAEAAR--RGLALRVEKLDLTDAIDR 66 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCcceEEEeeCCCHHHH
Confidence 478999975 589999999987554 45554 4555444444332211 133566778999999999
Q ss_pred HhccccccCeEEEec
Q 004328 277 ERAAANKARAIIILP 291 (761)
Q Consensus 277 ~ra~~~~A~avIIl~ 291 (761)
+++--...+.+|-.+
T Consensus 67 ~~~~~~~id~vi~~a 81 (257)
T PRK09291 67 AQAAEWDVDVLLNNA 81 (257)
T ss_pred HHHhcCCCCEEEECC
Confidence 887555778666544
No 104
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.91 E-value=25 Score=35.99 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=51.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ ..|..++++|.+.+. .++++..++.+..+++.+..... +.++.++.+|.++++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 68 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY-------------DIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEK 68 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence 3579999975 589999999988654 45554456555555544332111 3456677899999998
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 69 ~~~~~~~~~~~~~~id~vi~~a 90 (250)
T PRK08063 69 IKEMFAQIDEEFGRLDVFVNNA 90 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 776432 2467655544
No 105
>PRK06949 short chain dehydrogenase; Provisional
Probab=66.50 E-value=27 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=45.5
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|. |..|..++++|...+. .|+++ .++++..+++...+... +.++.++.+|.++++
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA-------------KVVLA-SRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHH
Confidence 4578899997 5589999999987543 45544 66666666654432111 234556778999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
+++++
T Consensus 72 ~~~~~ 76 (258)
T PRK06949 72 SIKAA 76 (258)
T ss_pred HHHHH
Confidence 87764
No 106
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=66.48 E-value=28 Score=35.57 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=47.5
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh-hHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~-~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
|+|.|. |..|..+++.|...+. .|.++.-.++ +..+++.. .+..+ +.+|..+++.|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------------~V~~l~R~~~~~~~~~l~~------~g~~v--v~~d~~~~~~l~ 59 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------------SVRALVRDPSSDRAQQLQA------LGAEV--VEADYDDPESLV 59 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------------CEEEEESSSHHHHHHHHHH------TTTEE--EES-TT-HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------------CcEEEEeccchhhhhhhhc------ccceE--eecccCCHHHHH
Confidence 577885 8999999999998544 4666654443 33333332 14554 489999999986
Q ss_pred hccccccCeEEEecCC
Q 004328 278 RAAANKARAIIILPTK 293 (761)
Q Consensus 278 ra~~~~A~avIIl~~~ 293 (761)
++ .+.+++|+++.+.
T Consensus 60 ~a-l~g~d~v~~~~~~ 74 (233)
T PF05368_consen 60 AA-LKGVDAVFSVTPP 74 (233)
T ss_dssp HH-HTTCSEEEEESSC
T ss_pred HH-HcCCceEEeecCc
Confidence 54 7799988876653
No 107
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.39 E-value=26 Score=35.97 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|. |..|..++++|...+. .++++ +++++..+.+...... .+.++.++.+|.++++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-------------KVVIA-DLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEA 67 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHH
Confidence 468999996 5689999999987544 46655 5666555554433211 13456667899999998
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a 89 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNA 89 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 866532 2456555444
No 108
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.35 E-value=22 Score=38.83 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+. .|..++++|.+.+. .|+++ .++++.++++.++... .+.++.++.+|.++++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------------~Vvl~-~R~~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------------RLVLA-ARDEEALQAVAEECRA--LGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHH
Confidence 357899999864 89999999987654 45544 6777777765544311 1456666788999988
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 70 ~v~~~ 74 (330)
T PRK06139 70 QVKAL 74 (330)
T ss_pred HHHHH
Confidence 87765
No 109
>PRK12746 short chain dehydrogenase; Provisional
Probab=66.33 E-value=30 Score=35.58 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=45.2
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .++++..++.+..+++.+..... +.++.+..+|.++++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~-------------~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~ 70 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA-------------LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDG 70 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHH
Confidence 4689999965 589999999987544 45554355555555544332111 3446667899999998
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
+.++
T Consensus 71 i~~~ 74 (254)
T PRK12746 71 VKKL 74 (254)
T ss_pred HHHH
Confidence 8765
No 110
>PRK07062 short chain dehydrogenase; Provisional
Probab=65.59 E-value=27 Score=36.26 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=45.1
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|...+. .|++ .+++++..++..+.....+.+.++.+..+|.++++.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-------------SVAI-CGRDEERLASAEARLREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------eEEE-EeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHH
Confidence 56788888764 89999999987544 4554 466666565544333222223456677888888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 74 v~~~ 77 (265)
T PRK07062 74 VAAF 77 (265)
T ss_pred HHHH
Confidence 7654
No 111
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.51 E-value=30 Score=36.47 Aligned_cols=67 Identities=9% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .|+ +.+++++.++++.+..... +.++.++.+|.++++.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-------------~Vv-~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~ 69 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-------------RVV-LGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREE 69 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEE-EEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHH
Confidence 4568888865 489999999987544 455 4467776666655433111 3456667889999888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 70 v~~~ 73 (275)
T PRK05876 70 VTHL 73 (275)
T ss_pred HHHH
Confidence 8765
No 112
>PRK05866 short chain dehydrogenase; Provisional
Probab=65.35 E-value=25 Score=37.58 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .|+++ +++.+.++++.+..... +.++.++.+|.++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-------------~Vi~~-~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~ 103 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-------------TVVAV-ARREDLLDAVADRITRA--GGDAMAVPCDLSDLDA 103 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 4678899974 589999999987544 46555 67776666655433111 3346667889888887
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
+.++- ...-+.+|-.+
T Consensus 104 v~~~~~~~~~~~g~id~li~~A 125 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNA 125 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 65542 23556554433
No 113
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=65.35 E-value=79 Score=31.43 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=49.3
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|+|. |..+..+++.|...+. .++++ .++.+..+++.+.+... .+..+. ..+..+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------------~V~l~-~R~~~~~~~l~~~l~~~-~~~~~~--~~~~~~~~ 89 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------------RVVLV-GRDLERAQKAADSLRAR-FGEGVG--AVETSDDA 89 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEEE-cCCHHHHHHHHHHHHhh-cCCcEE--EeeCCCHH
Confidence 3578999996 8999999999986433 46655 67777666665543211 123333 35666777
Q ss_pred HHHhccccccCeEEEecCC
Q 004328 275 SYERAAANKARAIIILPTK 293 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~ 293 (761)
++.+ .+.+|+. |+.++.
T Consensus 90 ~~~~-~~~~~di-Vi~at~ 106 (194)
T cd01078 90 ARAA-AIKGADV-VFAAGA 106 (194)
T ss_pred HHHH-HHhcCCE-EEECCC
Confidence 6654 3467884 444543
No 114
>PRK06940 short chain dehydrogenase; Provisional
Probab=65.20 E-value=24 Score=37.29 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=42.2
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+..+||.|.+-.|..++++|. .+. .|+++ +++++..+++.+..... +.++.+..+|.++++.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-------------~Vv~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i 64 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-------------KVLLA-DYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESV 64 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHH
Confidence 467899998889999999984 332 46555 66666565544333111 33555667777777666
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 65 ~~~ 67 (275)
T PRK06940 65 KAL 67 (275)
T ss_pred HHH
Confidence 554
No 115
>PRK05854 short chain dehydrogenase; Provisional
Probab=64.99 E-value=25 Score=37.97 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++||.|.+. .|..++++|.+.+. .|++. .++.+..++..++......+.++.++.+|.++.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-------------~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-------------EVILP-VRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLA 78 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHH
Confidence 356889999876 89999999987654 45544 5666655554443311111334666677887777
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
..+++
T Consensus 79 sv~~~ 83 (313)
T PRK05854 79 SVAAL 83 (313)
T ss_pred HHHHH
Confidence 76655
No 116
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.61 E-value=32 Score=35.20 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=52.1
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ +++++..+.+...... +.++.+..+|.++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~ 67 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-------------RVVVT-DRNEEAAERVAAEILA---GGRAIAVAADVSDEAD 67 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHH
Confidence 457888986 4589999999987654 55555 6766666655443311 3456677899999998
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
++++- ....+.||-.+
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 68 VEAAVAAALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 87652 23467665544
No 117
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=64.03 E-value=39 Score=34.89 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=45.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..|++|+|.|+.+..=++.|..++. .|.|+++.-.++++.+... -++.++..+. .+++|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA-------------~VtVVap~i~~el~~l~~~-------~~i~~~~r~~-~~~dl 83 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC-------------YVYILSKKFSKEFLDLKKY-------GNLKLIKGNY-DKEFI 83 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCCCCHHHHHHHhC-------CCEEEEeCCC-ChHHh
Confidence 5599999999999988888887654 6888887656667665431 1243344433 45555
Q ss_pred HhccccccCeEEEecC
Q 004328 277 ERAAANKARAIIILPT 292 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~ 292 (761)
+.|.- +++++
T Consensus 84 -----~g~~L-ViaAT 93 (223)
T PRK05562 84 -----KDKHL-IVIAT 93 (223)
T ss_pred -----CCCcE-EEECC
Confidence 45664 44454
No 118
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=63.98 E-value=32 Score=35.25 Aligned_cols=80 Identities=4% Similarity=-0.107 Sum_probs=49.2
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .++++..++++..+.+....... +.++.++.+|.++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 66 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-------------SVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEAD 66 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHH
Confidence 35789999764 89999999987544 45555445555544443322111 3456777899988887
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
++++- ....+.+|-.+
T Consensus 67 ~~~~~~~~~~~~~~id~li~~a 88 (248)
T PRK06947 67 VIAMFDAVQSAFGRLDALVNNA 88 (248)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 76532 23466555444
No 119
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.85 E-value=31 Score=35.60 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=44.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++++.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 74 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA-------------HVLVN-GRNAATLEAAVAALRAA--GGAAEALAFDIADEEA 74 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence 5678888875 488999999987544 46555 66666566554433111 3346667899999888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
+.++
T Consensus 75 ~~~~ 78 (256)
T PRK06124 75 VAAA 78 (256)
T ss_pred HHHH
Confidence 7654
No 120
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.75 E-value=35 Score=34.83 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ .++.+..+...+..... +.++.++.+|.++++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-------------EVIVV-DICGDDAAATAELVEAA--GGKARARQVDVRDRAA 69 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence 457889995 5689999999987544 45555 56554444443332111 3346667899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 877532 2567665554
No 121
>PRK06500 short chain dehydrogenase; Provisional
Probab=63.48 E-value=32 Score=35.14 Aligned_cols=63 Identities=6% Similarity=-0.015 Sum_probs=42.8
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ ..|..++++|.+.+. .++++ +++++..+++.++. +.++.++++|.++.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-------------RVAIT-GRDPASLEAARAEL-----GESALVIRADAGDVAA 66 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEe-cCCHHHHHHHHHHh-----CCceEEEEecCCCHHH
Confidence 4689999975 589999999987654 45544 66666666554433 3345566788888776
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+.+
T Consensus 67 ~~~ 69 (249)
T PRK06500 67 QKA 69 (249)
T ss_pred HHH
Confidence 544
No 122
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=63.38 E-value=29 Score=36.02 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=44.9
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++++..+++.+.. +.++.++.+|.++++.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-------------RVAVL-ERSAEKLASLRQRF-----GDHVLVVEGDVTSYAD 66 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCcceEEEccCCCHHH
Confidence 46789999865 89999999987654 45544 67777677665433 2245567889888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 67 ~~~~ 70 (263)
T PRK06200 67 NQRA 70 (263)
T ss_pred HHHH
Confidence 7654
No 123
>PRK07890 short chain dehydrogenase; Provisional
Probab=63.34 E-value=31 Score=35.49 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .|+++ +++++..+++....... +.++.++..|.++++.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-------------DVVLA-ARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQ 68 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHH
Confidence 4678899975 589999999987544 45555 66666666655433111 3446667889988887
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
++++= ..+.+.+|-.+
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 76432 23567555444
No 124
>CHL00194 ycf39 Ycf39; Provisional
Probab=63.18 E-value=26 Score=37.81 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=47.3
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+|+|.|. |-.|..++++|.+.++ .|++++ ++.+....+. ...+-++.||..++++|.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-------------~V~~l~-R~~~~~~~l~--------~~~v~~v~~Dl~d~~~l~ 59 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-------------QVRCLV-RNLRKASFLK--------EWGAELVYGDLSLPETLP 59 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-------------eEEEEE-cChHHhhhHh--------hcCCEEEECCCCCHHHHH
Confidence 5888885 7899999999998654 466563 4433222221 112445689999999987
Q ss_pred hccccccCeEEEecC
Q 004328 278 RAAANKARAIIILPT 292 (761)
Q Consensus 278 ra~~~~A~avIIl~~ 292 (761)
++ ++.+++||-++.
T Consensus 60 ~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 60 PS-FKGVTAIIDAST 73 (317)
T ss_pred HH-HCCCCEEEECCC
Confidence 65 556887776543
No 125
>PRK07326 short chain dehydrogenase; Provisional
Probab=63.14 E-value=33 Score=34.84 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ +++++..+++.+.+... .++.++.+|.++++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~ 68 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-------------KVAIT-ARDQKELEEAAAELNNK---GNVLGLAADVRDEAD 68 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEe-eCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHH
Confidence 467899986 5699999999986543 45555 66666666555443211 345667899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|..+
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~a 90 (237)
T PRK07326 69 VQRAVDAIVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 765332 3567665544
No 126
>PRK08267 short chain dehydrogenase; Provisional
Probab=63.09 E-value=28 Score=36.02 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=45.5
Q ss_pred CeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|.+. .|..++++|.+.+. .|+++ +++++.++++..... +.++.++++|.++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v 63 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-------------RVGAY-DINEAGLAALAAELG----AGNAWTGALDVTDRAAW 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHhc----CCceEEEEecCCCHHHH
Confidence 4689999764 78999999987543 45555 677776776654331 34566778999998888
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 64 ~~~ 66 (260)
T PRK08267 64 DAA 66 (260)
T ss_pred HHH
Confidence 764
No 127
>PRK06138 short chain dehydrogenase; Provisional
Probab=63.07 E-value=36 Score=34.89 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ ..|..++++|.+.+. .++++ .++.+..++..+... .+.++.+..+|.++++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~ 67 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-------------RVVVA-DRDAEAAERVAAAIA---AGGRAFARQGDVGSAEA 67 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEe-cCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHH
Confidence 4588999975 589999999987543 45545 566655555443321 13456677899999988
Q ss_pred HHhccc------cccCeEEEecC
Q 004328 276 YERAAA------NKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~~ 292 (761)
++++-- ...+.+|-.+.
T Consensus 68 ~~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 68 VEALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 876521 35676555443
No 128
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.04 E-value=34 Score=35.38 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=44.5
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .|+++ +++.+..+++.+.. +.++.++.+|.++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-------------RVVIA-DIKPARARLAALEI-----GPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-cCCHHHHHHHHHHh-----CCceEEEEccCCCHHH
Confidence 4568899874 589999999987654 45544 77776666655432 2245667889888888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 67 ~~~~ 70 (257)
T PRK07067 67 IDRI 70 (257)
T ss_pred HHHH
Confidence 7664
No 129
>PRK09242 tropinone reductase; Provisional
Probab=62.90 E-value=36 Score=35.17 Aligned_cols=68 Identities=6% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+++.....+.++.++.+|.++++.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-------------DVLIV-ARDADALAQARDELAEEFPEREVHGLAADVSDDED 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH
Confidence 3567888864 589999999987544 56655 56666666655443222224567777899998877
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 75 ~~~ 77 (257)
T PRK09242 75 RRA 77 (257)
T ss_pred HHH
Confidence 654
No 130
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.80 E-value=36 Score=34.59 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=50.8
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|. |..|..++++|.+.+. .++++.+++.+..+.+.+.... .+.++.++.+|.++++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 69 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-------------KVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEED 69 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 468999997 5689999999987544 4554425555555554443211 13456777899999998
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|..+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (247)
T PRK05565 70 VENLVEQIVEKFGKIDILVNNA 91 (247)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 766532 1456655444
No 131
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.75 E-value=33 Score=35.87 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=44.8
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+ ..|..++++|...+. .|+++ ++++++.++..+..... +.++.++.+|.++++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-------------NVAVA-SRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYA 71 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHh--CCceEEEECCCCCHH
Confidence 35789999985 589999999987544 45544 66666665544332111 234556789999988
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 72 ~i~~~ 76 (264)
T PRK07576 72 AVEAA 76 (264)
T ss_pred HHHHH
Confidence 77664
No 132
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=62.71 E-value=49 Score=34.25 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.4
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
...+++|.|+|++|..+++.|.+.+.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~ 55 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGA 55 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999987543
No 133
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.60 E-value=35 Score=35.31 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+.+.+.... .+.++.+..+|.++++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~ 75 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-------------RVVLS-ARKAEELEEAAAHLEA--LGIDALWIAADVADEAD 75 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHH
Confidence 5789999964 589999999987544 45544 6666666554433211 13456667899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-. ..-+.+|-.+
T Consensus 76 i~~~~~~~~~~~~~id~vi~~a 97 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNA 97 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 855321 2456555544
No 134
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.59 E-value=37 Score=34.48 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=50.0
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..+++.|.+.+. .|+++..++.+..+.+.+..... +.++.++.+|.++.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 69 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA-------------NVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAES 69 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 4578889874 589999999987654 46566554443344433322111 3456677899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
+.++-- ...+.+|..+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (248)
T PRK05557 70 VERAVDEAKAEFGGVDILVNNA 91 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 876522 2456665544
No 135
>PRK08339 short chain dehydrogenase; Provisional
Probab=62.51 E-value=31 Score=36.07 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|++ .+++++..+++.++.... .+.++.++.+|.++++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~ 72 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-------------DVIL-LSRNEENLKKAREKIKSE-SNVDVSYIVADLTKRED 72 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHH
Confidence 35678999764 89999999987654 4554 477777666655433111 13456667888888877
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 73 i~~~ 76 (263)
T PRK08339 73 LERT 76 (263)
T ss_pred HHHH
Confidence 7654
No 136
>PRK12829 short chain dehydrogenase; Provisional
Probab=62.14 E-value=34 Score=35.32 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+ ..|..++++|.+.+. .|+++ .++++..+++.+.. . +.++.++.+|.++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~~~-~---~~~~~~~~~D~~~~~ 71 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------------RVHVC-DVSEAALAATAARL-P---GAKVTATVADVADPA 71 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHH-h---cCceEEEEccCCCHH
Confidence 46789999975 589999999987654 45544 66766666554432 1 224566789999999
Q ss_pred HHHhcc------ccccCeEEEecC
Q 004328 275 SYERAA------ANKARAIIILPT 292 (761)
Q Consensus 275 ~L~ra~------~~~A~avIIl~~ 292 (761)
.++++- ....+.||-.+.
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 876642 135787665443
No 137
>PRK09135 pteridine reductase; Provisional
Probab=61.76 E-value=42 Score=34.18 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ -.|..++++|.+.+. .++++....++..+.+.... .+..+..+.+..+|.++.+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~-------------~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 71 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY-------------RVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDA 71 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHH
Confidence 4689999975 589999999987544 46555333343344333222 11112345667899999888
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
+.++-- ...+.||-.+
T Consensus 72 ~~~~~~~~~~~~~~~d~vi~~a 93 (249)
T PRK09135 72 LPELVAACVAAFGRLDALVNNA 93 (249)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 776532 2456555444
No 138
>PRK12937 short chain dehydrogenase; Provisional
Probab=61.63 E-value=38 Score=34.48 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=49.7
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+ ..|..++++|.+.+. .++++...++...+++.+.... .+.++.++.+|.++.+.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 69 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF-------------AVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVADAAA 69 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEecCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 4689999974 589999999987654 4555433333333443332211 14457777899999887
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++=- .+.+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNA 91 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 766522 2567655544
No 139
>PRK05867 short chain dehydrogenase; Provisional
Probab=61.55 E-value=37 Score=35.02 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+++.+..... +.++.+..+|.++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 72 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-------------QVAI-AARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQ 72 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence 4678899975 489999999987544 4554 477777777665543211 3456667899998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 73 ~~~~ 76 (253)
T PRK05867 73 VTSM 76 (253)
T ss_pred HHHH
Confidence 7654
No 140
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=61.31 E-value=16 Score=42.33 Aligned_cols=55 Identities=18% Similarity=0.447 Sum_probs=39.9
Q ss_pred CCCChhHHHHHhhheeeecccccc-cCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 124 ETQSLEDCLWEAWACLISSSTHLK-QRTRVERVIGFILAIWGILFYSRLLSTMTEQ 178 (761)
Q Consensus 124 ~~~s~~da~w~~~~~~t~~g~g~~-d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~ 178 (761)
...+|..|.|++|-++..+|.|.| |.+...|+++++-.=+.+++++...+-++..
T Consensus 610 ~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 610 DALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred hhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 357899999999999999988776 4667789888776555555555555544443
No 141
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=61.22 E-value=33 Score=35.35 Aligned_cols=74 Identities=7% Similarity=0.135 Sum_probs=48.9
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|. |..|..++++|.+.+. .|+++ +++++.++.+.+.. +.++.+..+|.++.+.++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~ 62 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-------------KVIAT-GRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIE 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHH
Confidence 4788886 4589999999987554 45555 66666666654432 234666789999998876
Q ss_pred hcc------ccccCeEEEec
Q 004328 278 RAA------ANKARAIIILP 291 (761)
Q Consensus 278 ra~------~~~A~avIIl~ 291 (761)
++= ....+.+|..+
T Consensus 63 ~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 63 EMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 541 13567665544
No 142
>PRK06101 short chain dehydrogenase; Provisional
Probab=61.18 E-value=27 Score=35.79 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=42.5
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
-++|.|.+ -.|..++++|.+.+. +|+++ +++++.++++.+. ..++.++.+|.++++.++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~ 62 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGW-------------QVIAC-GRNQSVLDELHTQ------SANIFTLAFDVTDHPGTK 62 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCC-------------EEEEE-ECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHH
Confidence 47888875 488999999987544 55554 6777666665432 123556789999998877
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 63 ~~ 64 (240)
T PRK06101 63 AA 64 (240)
T ss_pred HH
Confidence 75
No 143
>PRK05326 potassium/proton antiporter; Reviewed
Probab=61.07 E-value=11 Score=44.56 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCCEEEEEecCCC
Q 004328 701 ENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 755 (761)
Q Consensus 701 ~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD~lIVi~~~~~ 755 (761)
.+.+..++. ..++..+++++|+++. ++|.+ +.++++||+++++++.+.
T Consensus 428 ~G~~l~el~---lp~~~~i~~v~R~g~~-~~p~~---~t~L~~GD~l~l~~~~~~ 475 (562)
T PRK05326 428 VGKALRDLR---LPRGALIALIIRDGKL-LVPTG---STRLKAGDVLLVLGPERD 475 (562)
T ss_pred cCCCHHHcC---CCCCcEEEEEEECCEE-eCCCC---CCeECCCCEEEEEECHHH
Confidence 345555552 2468888888887765 68864 349999999999986543
No 144
>PRK07831 short chain dehydrogenase; Provisional
Probab=60.88 E-value=40 Score=34.95 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCeEEEEcc-C-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 196 ESDHIIVCGV-N-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 196 ~~~HiII~G~-~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
....++|.|. | ..|..++++|...+. .|++ .+++++.+++..+.....+...++.++.+|.+++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-------------~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-------------RVVI-SDIHERRLGETADELAAELGLGRVEAVVCDVTSE 81 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCH
Confidence 4578999997 4 499999999987544 4554 4666655555443221111123465677888887
Q ss_pred HHHHhc
Q 004328 274 KSYERA 279 (761)
Q Consensus 274 ~~L~ra 279 (761)
+.++++
T Consensus 82 ~~~~~~ 87 (262)
T PRK07831 82 AQVDAL 87 (262)
T ss_pred HHHHHH
Confidence 766653
No 145
>PRK05650 short chain dehydrogenase; Provisional
Probab=60.83 E-value=33 Score=35.82 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=43.8
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+++....... +.++.++.+|.++++.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~ 65 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-------------RLALA-DVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLT 65 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHH
Confidence 68888864 589999999987544 45544 66666666554433111 345667789999988776
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 66 ~~ 67 (270)
T PRK05650 66 AL 67 (270)
T ss_pred HH
Confidence 54
No 146
>PLN03223 Polycystin cation channel protein; Provisional
Probab=60.28 E-value=51 Score=42.10 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCCChhHHHHHhhheeeeccccc--cc-------CCcchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 004328 124 ETQSLEDCLWEAWACLISSSTHL--KQ-------RTRVERVIGFI-LAIWGILFYSRLLSTMTEQFRNN 182 (761)
Q Consensus 124 ~~~s~~da~w~~~~~~t~~g~g~--~d-------~t~~~rl~~~~-l~l~Gi~~fa~li~~i~~~l~~~ 182 (761)
...|+..+++..|.+++. .+.| .+ ....|.++-+. ++++.++++-+++++|.+.+.+.
T Consensus 1358 ~FSTf~sSL~TLFqMLLG-DfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLLG-DITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred hhcCHHHHHHHHHHHHHc-CchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888766655431 1222 11 12456654444 55566677889999999988764
No 147
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.01 E-value=44 Score=34.40 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |-.|..++++|.+.+. .|+++ +++++..+++.+.... .+.++.++.+|.++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 70 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------------AVAIA-DLNQDGANAVADEINK--AGGKAIGVAMDVTNEDA 70 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------eEEEE-eCChHHHHHHHHHHHh--cCceEEEEECCCCCHHH
Confidence 467899998 4589999999987544 46554 6666555555443311 13457778899999888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 71 ~~~~ 74 (262)
T PRK13394 71 VNAG 74 (262)
T ss_pred HHHH
Confidence 7654
No 148
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=59.70 E-value=45 Score=34.04 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=43.0
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.-++|.|. +..|..++++|.+.+. .+++....+....++..+.... .+.++.++.+|.++.+.+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 68 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF-------------KVVAGCGPNSPRRVKWLEDQKA--LGFDFIASEGNVGDWDST 68 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC-------------EEEEEcCCChHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHH
Confidence 45688887 4589999999987654 4555444444333333332211 145677788999999888
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 69 ~~~ 71 (246)
T PRK12938 69 KAA 71 (246)
T ss_pred HHH
Confidence 765
No 149
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=59.61 E-value=40 Score=34.15 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=50.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ .++++..+.+...... .+.++.++.+|.++++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 68 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-------------KVVIY-DSNEEAAEALAAELRA--AGGEARVLVFDVSDEAA 68 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCChhHHHHHHHHHHh--cCCceEEEEccCCCHHH
Confidence 3579999974 589999999987544 45544 6666555554433211 13456677899999987
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
+.++-- ...+.+|-.+
T Consensus 69 ~~~~~~~~~~~~~~id~vi~~a 90 (246)
T PRK05653 69 VRALIEAAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 766422 2347666554
No 150
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=59.34 E-value=1.8e+02 Score=33.20 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYH 220 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~ 220 (761)
..+++|+|.|+.+..++++|.+..
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~ 148 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNP 148 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCc
Confidence 457999999999999999998643
No 151
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=59.04 E-value=19 Score=35.17 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
....|.|+|||.+|..-...|+..+. +|+|-...+....++..+ + |..+. +
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-------------~V~Vglr~~s~s~~~A~~----~--Gf~v~----------~ 53 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-------------NVIVGLREGSASWEKAKA----D--GFEVM----------S 53 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--------------EEEEEE-TTCHHHHHHHH----T--T-ECC----------E
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-------------CEEEEecCCCcCHHHHHH----C--CCeec----------c
Confidence 35678999999999999999987544 444432333334554432 1 44332 3
Q ss_pred HHhccccccCeEEEecC
Q 004328 276 YERAAANKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~ 292 (761)
...| +++|+.|++|.+
T Consensus 54 ~~eA-v~~aDvV~~L~P 69 (165)
T PF07991_consen 54 VAEA-VKKADVVMLLLP 69 (165)
T ss_dssp HHHH-HHC-SEEEE-S-
T ss_pred HHHH-HhhCCEEEEeCC
Confidence 3334 778998888776
No 152
>PRK07774 short chain dehydrogenase; Provisional
Probab=59.02 E-value=43 Score=34.25 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+...++|.|. |-.|..++++|.+.+. .++++ +++++..+++.+..... +..+.+..+|.++.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-------------SVVVA-DINAEGAERVAKQIVAD--GGTAIAVQVDVSDPD 68 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHH
Confidence 3567999997 5689999999987654 56655 56655444443322111 223455678988888
Q ss_pred HHHhccc------cccCeEEEec
Q 004328 275 SYERAAA------NKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~------~~A~avIIl~ 291 (761)
.++++-- ..-+.||-.+
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~a 91 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNA 91 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 7765332 2456555444
No 153
>PRK07806 short chain dehydrogenase; Provisional
Probab=59.01 E-value=49 Score=33.84 Aligned_cols=68 Identities=13% Similarity=0.031 Sum_probs=42.4
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. +-.|..++++|...+. .|+++...+.+..+.+....... +.++.+..+|.++++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-------------~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 70 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-------------HVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEES 70 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 356889997 4689999999987554 45555333333334333222111 3346667899999988
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 71 ~~~~ 74 (248)
T PRK07806 71 VAAL 74 (248)
T ss_pred HHHH
Confidence 7654
No 154
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=58.99 E-value=13 Score=36.29 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=42.1
Q ss_pred EEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 502 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 502 iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
|+|+|. |..+..++++|.+ .|.+|+.+...+. +.+ ...+ +.++.||..|.+.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~---~~~~V~~~~R~~~--~~~--------~~~~--~~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR---RGHEVTALVRSPS--KAE--------DSPG--VEIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTSEEEEEESSGG--GHH--------HCTT--EEEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHH---CCCEEEEEecCch--hcc--------cccc--cccceeeehhhhhhhhh
Confidence 689996 7899999999964 5688999987432 211 1234 55699999999999987
No 155
>PRK07478 short chain dehydrogenase; Provisional
Probab=58.94 E-value=42 Score=34.59 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=45.3
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .++++ .++++..+++.++... . +.++.++.+|.++++.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~ 69 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-------------KVVVG-ARRQAELDQLVAEIRA-E-GGEAVALAGDVRDEAY 69 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh-c-CCcEEEEEcCCCCHHH
Confidence 35788888764 89999999987654 45555 6666666665543311 1 3456667889998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 70 ~~~~ 73 (254)
T PRK07478 70 AKAL 73 (254)
T ss_pred HHHH
Confidence 7654
No 156
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=58.79 E-value=1.2e+02 Score=34.55 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYH 220 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~ 220 (761)
+.+++|+|.|+.+..++++|...+
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~ 151 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNP 151 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCc
Confidence 568999999999999999997643
No 157
>PRK06482 short chain dehydrogenase; Provisional
Probab=58.74 E-value=39 Score=35.38 Aligned_cols=76 Identities=8% Similarity=0.039 Sum_probs=50.8
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|.+ -.|..++++|.+.+. .++++ .++++.++.+.... +.++.+..+|.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~ 63 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------------RVAAT-VRRPDALDDLKARY-----GDRLWVLQLDVTDSAAV 63 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhc-----cCceEEEEccCCCHHHH
Confidence 578999974 589999999987654 45544 56666666654432 23456678999999888
Q ss_pred Hhcc------ccccCeEEEecC
Q 004328 277 ERAA------ANKARAIIILPT 292 (761)
Q Consensus 277 ~ra~------~~~A~avIIl~~ 292 (761)
+++- ....+.||-++.
T Consensus 64 ~~~~~~~~~~~~~id~vi~~ag 85 (276)
T PRK06482 64 RAVVDRAFAALGRIDVVVSNAG 85 (276)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7642 234576655543
No 158
>PLN02214 cinnamoyl-CoA reductase
Probab=58.42 E-value=1.2e+02 Score=33.18 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=60.6
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcc
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 577 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~ 577 (761)
.++++|.|. |-.+..++++|. ..|..|+.+...+.......+..+ ... ..++.++.||.++.+.+.++ +.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~---~~G~~V~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~~~Dl~d~~~~~~~-~~-- 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILL---ERGYTVKGTVRNPDDPKNTHLREL--EGG-KERLILCKADLQDYEALKAA-ID-- 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHH---HCcCEEEEEeCCchhhhHHHHHHh--hCC-CCcEEEEecCcCChHHHHHH-Hh--
Confidence 467999998 578999999996 357788877653221111111111 011 12466789999999999876 12
Q ss_pred ccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCC
Q 004328 578 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVK 627 (761)
Q Consensus 578 ~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 627 (761)
..| .++-++.... .++...-..|+...+.+=+.+.+.+.+
T Consensus 81 ---~~d-----~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~~v~ 120 (342)
T PLN02214 81 ---GCD-----GVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEAKVK 120 (342)
T ss_pred ---cCC-----EEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 234 5666654221 122222233454444444444455553
No 159
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.05 E-value=49 Score=33.88 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..+++.|.+.+. .++++..++++..+.+.... +.++.++.+|.++++.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA-------------RVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQ 66 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------------eEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHH
Confidence 3568888865 589999999987654 46555444555555544332 2346667888888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 67 ~~~~ 70 (253)
T PRK08642 67 VQAM 70 (253)
T ss_pred HHHH
Confidence 7654
No 160
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=57.22 E-value=45 Score=34.22 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=43.0
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|. +..|..++++|.+.+. .++++ +++.+..+++.+..... +.++.++.+|.++++.++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~ 65 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-------------AVAVA-DLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVF 65 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHH
Confidence 5788996 4589999999987544 46655 55555555444332111 445666789999988877
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 66 ~~ 67 (254)
T TIGR02415 66 SA 67 (254)
T ss_pred HH
Confidence 64
No 161
>PRK06197 short chain dehydrogenase; Provisional
Probab=56.78 E-value=46 Score=35.56 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=44.5
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....++|.|.+ -.|..++++|.+.+. .++++ .++.+..++..+.......+.++.+..+|.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-------------~vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-------------HVVLA-VRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 35678899975 489999999987654 46555 4555544443332211111345666788999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 81 ~v~~~ 85 (306)
T PRK06197 81 SVRAA 85 (306)
T ss_pred HHHHH
Confidence 87765
No 162
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=56.58 E-value=46 Score=33.85 Aligned_cols=66 Identities=6% Similarity=-0.077 Sum_probs=42.1
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
-++|.|.+ -.|..++++|.+.+. .++++..++++..++....... .+.++..+.+|.++++.++
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~ 67 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGY-------------TVAVNYQQNLHAAQEVVNLITQ--AGGKAFVLQADISDENQVV 67 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHh--CCCeEEEEEccCCCHHHHH
Confidence 37888875 589999999987654 4554434555555444332211 1344666789999998776
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 68 ~~ 69 (247)
T PRK09730 68 AM 69 (247)
T ss_pred HH
Confidence 64
No 163
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=56.09 E-value=1.3e+02 Score=34.13 Aligned_cols=119 Identities=14% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|+|+.+..+++.|...+. ..|.|. .+..+..+++.+++ + |.+...+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~------------~~i~Ia-NRT~erA~~La~~~-----~-------~~~~~l~e 231 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV------------KKITIA-NRTLERAEELAKKL-----G-------AEAVALEE 231 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC------------CEEEEE-cCCHHHHHHHHHHh-----C-------CeeecHHH
Confidence 36789999999999999999988664 256654 78888888887755 2 33333444
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHH-HhhcCCCeEEEchh
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVEN 347 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~-l~~~g~d~Vi~~~~ 347 (761)
|. ..+..||.| |.++.....-.....+...+..+. . -+++=+..|.+.+. .....+-.+...++
T Consensus 232 l~-~~l~~~DvV-issTsa~~~ii~~~~ve~a~~~r~-----~-~livDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 232 LL-EALAEADVV-ISSTSAPHPIITREMVERALKIRK-----R-LLIVDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred HH-HhhhhCCEE-EEecCCCccccCHHHHHHHHhccc-----C-eEEEEecCCCCCCccccCcCCeEEEehhh
Confidence 33 347788954 445433211122333433343111 1 25667777776542 33333334555543
No 164
>PRK07102 short chain dehydrogenase; Provisional
Probab=55.91 E-value=45 Score=34.06 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=48.4
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|. +..|..++++|.+.+. .|+++ +++++..+.+.++... ..+.++.++.+|.++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~ 66 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-------------RLYLA-ARDVERLERLADDLRA-RGAVAVSTHELDILDTASH 66 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-------------EEEEE-eCCHHHHHHHHHHHHH-hcCCeEEEEecCCCChHHH
Confidence 36889986 5589999999987544 45555 6666555554432211 1134566778999999887
Q ss_pred Hhccc---cccCeEEEe
Q 004328 277 ERAAA---NKARAIIIL 290 (761)
Q Consensus 277 ~ra~~---~~A~avIIl 290 (761)
+++-- .+.+.++..
T Consensus 67 ~~~~~~~~~~~d~vv~~ 83 (243)
T PRK07102 67 AAFLDSLPALPDIVLIA 83 (243)
T ss_pred HHHHHHHhhcCCEEEEC
Confidence 76422 234655543
No 165
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=55.87 E-value=95 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=42.3
Q ss_pred eEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 501 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 501 ~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++|.|. |-.+..+++.|.+ .|..|..++..+... ..+....+.++.||.++.+.++++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~----------~~~~~~~~~~~~~D~~~~~~l~~~ 61 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTSDR----------RNLEGLDVEIVEGDLRDPASLRKA 61 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCccc----------cccccCCceEEEeeCCCHHHHHHH
Confidence 5789987 6789999999964 477888887643211 112223467799999999998876
No 166
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=55.77 E-value=52 Score=38.85 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=53.4
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcc------c-CCCceEEEEe
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK------D-LNHIDILSKS 267 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~------~-~~~~~V~~~~ 267 (761)
+.+.++|.|. |..|..++++|.+.+. .|+++ .++.+..+.+.+.+.. . ....++.++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------------~Vval-~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~ 144 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-------------RVRAG-VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVE 144 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHhhhhccccccccccCceEEEE
Confidence 3567889987 6799999999987654 45555 5666655554432200 0 0012466778
Q ss_pred CCCCCHHHHHhccccccCeEEEecC
Q 004328 268 CSLTLTKSYERAAANKARAIIILPT 292 (761)
Q Consensus 268 Gd~~~~~~L~ra~~~~A~avIIl~~ 292 (761)
||.++.++++++ +..++.||..+.
T Consensus 145 gDLtD~esI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 145 CDLEKPDQIGPA-LGNASVVICCIG 168 (576)
T ss_pred ecCCCHHHHHHH-hcCCCEEEEccc
Confidence 999999988764 567887766543
No 167
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=55.68 E-value=51 Score=34.55 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+++.+.... .+.++.+..+|.++++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-------------KVAIL-DRNQEKAEAVVAEIKA--AGGEALAVKADVLDKES 73 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 5678888875 588999999987544 46555 6666555555443311 13457777899999887
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
+.++- ....+.+|-.+
T Consensus 74 v~~~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 76542 13456554433
No 168
>PRK06181 short chain dehydrogenase; Provisional
Probab=55.57 E-value=47 Score=34.38 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=43.4
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+.++|.|.+ ..|..++++|.+.+. .|+++ ++++...+++.+..... +.++.+..+|.++++.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~ 65 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------------QLVLA-ARNETRLASLAQELADH--GGEALVVPTDVSDAEAC 65 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHH
Confidence 468999984 589999999986543 45555 56665555544433111 33566678899988877
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 66 ~~~ 68 (263)
T PRK06181 66 ERL 68 (263)
T ss_pred HHH
Confidence 654
No 169
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=55.48 E-value=46 Score=31.48 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 254 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~ 254 (761)
...+++|+|.|..+..+++.|...+. ..+++. +++++..+++.+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~------------~~v~v~-~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGA------------AKIVIV-NRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------------CEEEEE-cCCHHHHHHHHHHH
Confidence 36789999999999999999986531 135544 77777777765543
No 170
>PRK08589 short chain dehydrogenase; Validated
Probab=55.41 E-value=47 Score=34.79 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .|+++ +++ +..+++.++.... +.++.++.+|.++++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-------------~vi~~-~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 68 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-------------YVLAV-DIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQ 68 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHH
Confidence 46889999865 89999999987654 45555 555 5555544433111 3456667888888877
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 69 ~~~ 71 (272)
T PRK08589 69 VKD 71 (272)
T ss_pred HHH
Confidence 654
No 171
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=55.35 E-value=57 Score=33.78 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .+|+....+.+..+.+.+..... +.++.+..+|.++.+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~-------------~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 71 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA-------------KVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESD 71 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHH
Confidence 56788898765 79999999987654 45655443444444433322111 3455566788888877
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 72 i~~~ 75 (261)
T PRK08936 72 VVNL 75 (261)
T ss_pred HHHH
Confidence 6553
No 172
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=55.24 E-value=56 Score=33.36 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+++.+..... +.++.++.+|.++.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~ 66 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------------KVAVF-DLNREAAEKVAADIRAK--GGNAQAFACDITDRDS 66 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEe-cCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHH
Confidence 4678888864 589999999987544 45544 66665555544332111 3346667899999888
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|..+
T Consensus 67 ~~~~~~~~~~~~~~~d~vi~~a 88 (250)
T TIGR03206 67 VDTAVAAAEQALGPVDVLVNNA 88 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 776521 2456555544
No 173
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=55.20 E-value=45 Score=34.55 Aligned_cols=64 Identities=9% Similarity=0.167 Sum_probs=42.4
Q ss_pred eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+++|.|.+. .|..++++|.+.+. .|+++ +++++..+++.++.... + ++.+..+|.++++.++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~~~ 64 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-------------RVVIS-SRNEENLEKALKELKEY--G-EVYAVKADLSDKDDLK 64 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--C-CceEEEcCCCCHHHHH
Confidence 688999765 89999999987654 45544 67766666655433111 1 3555678888887766
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 65 ~~ 66 (259)
T PRK08340 65 NL 66 (259)
T ss_pred HH
Confidence 54
No 174
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=55.17 E-value=45 Score=34.50 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=42.7
Q ss_pred eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|.+. .|..++++|.+.... .| ..|+++ .++++.++++.++......+.++.++.+|.++.+.++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~---~g------~~V~~~-~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~ 71 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKS---PG------SVLVLS-ARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLE 71 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhcc---CC------cEEEEE-EcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHH
Confidence 478888765 789999999752100 01 145544 6777777766554322112345666778888877666
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 72 ~~ 73 (256)
T TIGR01500 72 QL 73 (256)
T ss_pred HH
Confidence 54
No 175
>PRK12743 oxidoreductase; Provisional
Probab=55.17 E-value=58 Score=33.67 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=49.3
Q ss_pred CeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+-++|.|.+. .|..++++|.+.+. .|+++...+++..+.+.+.... .+.++.++.+|.++.+.+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~-------------~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~ 67 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF-------------DIGITWHSDEEGAKETAEEVRS--HGVRAEIRQLDLSDLPEG 67 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHh--cCCceEEEEccCCCHHHH
Confidence 3578888764 89999999988654 4665544555555554433211 144566778999998876
Q ss_pred Hhccc------cccCeEEEec
Q 004328 277 ERAAA------NKARAIIILP 291 (761)
Q Consensus 277 ~ra~~------~~A~avIIl~ 291 (761)
+++-- ...+.+|..+
T Consensus 68 ~~~~~~~~~~~~~id~li~~a 88 (256)
T PRK12743 68 AQALDKLIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 65422 2457655444
No 176
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=54.97 E-value=49 Score=34.34 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++.+..+++.+.+ +.++.++.+|.++.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~ 65 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA-------------RVAVL-DKSAAGLQELEAAH-----GDAVVGVEGDVRSLDD 65 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHhhc-----CCceEEEEeccCCHHH
Confidence 45678888754 89999999987654 45554 67666666654322 3346667788888776
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
..++
T Consensus 66 ~~~~ 69 (262)
T TIGR03325 66 HKEA 69 (262)
T ss_pred HHHH
Confidence 6543
No 177
>PRK07814 short chain dehydrogenase; Provisional
Probab=54.12 E-value=58 Score=33.87 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=45.0
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..-++|.|.+. .|..+++.|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-------------DVLIA-ARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEA 73 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 45688888764 89999999987544 56655 66666666655433111 3456667899999988
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 74 ~~~~ 77 (263)
T PRK07814 74 TAGL 77 (263)
T ss_pred HHHH
Confidence 7654
No 178
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=54.07 E-value=62 Score=33.28 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=44.0
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .+++ .+++++..+++.++.... +.++..+.+|.++++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-------------~vvl-~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 72 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-------------EIII-NDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQE 72 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------------EEEE-EcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHH
Confidence 4568888875 489999999987544 4554 467666666554433111 3345566788888877
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 73 ~~~~ 76 (254)
T PRK08085 73 VEAA 76 (254)
T ss_pred HHHH
Confidence 7654
No 179
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.76 E-value=45 Score=34.65 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=42.4
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhH-HHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ-MDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~-~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..+++|.|.+. .|..++++|.+.+. ..|+++ .++++. ++++.++... ..+.++.++.+|.++++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg------------~~V~~~-~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAP------------ARVVLA-ALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTD 73 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC------------CeEEEE-eCCcchhHHHHHHHHHh-cCCCceEEEEecCCChH
Confidence 56899999865 89999999987531 145544 555443 5554443311 11235667788888877
Q ss_pred HHHh
Q 004328 275 SYER 278 (761)
Q Consensus 275 ~L~r 278 (761)
..++
T Consensus 74 ~~~~ 77 (253)
T PRK07904 74 SHPK 77 (253)
T ss_pred HHHH
Confidence 6443
No 180
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=53.61 E-value=1.2e+02 Score=32.24 Aligned_cols=71 Identities=6% Similarity=0.021 Sum_probs=45.0
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+-.|-|+|+|..|..+++.|..... .-.++.+.+.+++..+++.+.+ +.. .-..+.+.|
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~-----------~~el~aV~dr~~~~a~~~a~~~-----g~~-----~~~~~~eel 64 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLP-----------GLTLSAVAVRDPQRHADFIWGL-----RRP-----PPVVPLDQL 64 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCC-----cccCCHHHH
Confidence 3568999999999999998875311 0146666788877766655432 110 012455666
Q ss_pred HhccccccCeEEEecC
Q 004328 277 ERAAANKARAIIILPT 292 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~ 292 (761)
. .++|.|++.++
T Consensus 65 l----~~~D~Vvi~tp 76 (271)
T PRK13302 65 A----THADIVVEAAP 76 (271)
T ss_pred h----cCCCEEEECCC
Confidence 3 45798887765
No 181
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=53.34 E-value=61 Score=33.14 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh-hHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~-~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ ++++ ++..+..+.. +.++.++.+|.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~vi~~-~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~ 65 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA-------------DIVGA-GRSEPSETQQQVEAL-----GRRFLSLTADLSDIE 65 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-cCchHHHHHHHHHhc-----CCceEEEECCCCCHH
Confidence 4568888975 589999999988654 46655 4433 2222222211 234566788988888
Q ss_pred HHHh
Q 004328 275 SYER 278 (761)
Q Consensus 275 ~L~r 278 (761)
.+++
T Consensus 66 ~~~~ 69 (248)
T TIGR01832 66 AIKA 69 (248)
T ss_pred HHHH
Confidence 7764
No 182
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=53.28 E-value=75 Score=34.77 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=52.6
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....++|.|. |-.|..++++|...+. .|+++ +++.+..+.+...+.. +.++.++.||..+.+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------------TVHAT-LRDPAKSLHLLSKWKE---GDRLRLFRADLQEEG 71 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCChHHHHHHHHhhcc---CCeEEEEECCCCCHH
Confidence 4668999996 5699999999987654 46655 4444333333322211 234666789999998
Q ss_pred HHHhccccccCeEEEecCC
Q 004328 275 SYERAAANKARAIIILPTK 293 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~ 293 (761)
.++++ ++..+.||-++..
T Consensus 72 ~~~~~-~~~~d~Vih~A~~ 89 (353)
T PLN02896 72 SFDEA-VKGCDGVFHVAAS 89 (353)
T ss_pred HHHHH-HcCCCEEEECCcc
Confidence 88776 3467877766653
No 183
>PRK08219 short chain dehydrogenase; Provisional
Probab=53.15 E-value=63 Score=32.32 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=49.1
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|. |..|..++++|.+. . .|+++ +++++..+++.+.. .++.++.||.++++.+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-------------~V~~~-~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~ 62 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-------------TLLLG-GRPAERLDELAAEL------PGATPFPVDLTDPEAI 62 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-------------CEEEE-eCCHHHHHHHHHHh------ccceEEecCCCCHHHH
Confidence 57888886 55899999999875 4 46655 56665555544321 1244568999999988
Q ss_pred Hhcccc--ccCeEEEecC
Q 004328 277 ERAAAN--KARAIIILPT 292 (761)
Q Consensus 277 ~ra~~~--~A~avIIl~~ 292 (761)
+++--. ..+.+|-.+.
T Consensus 63 ~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 63 AAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 875432 5776665543
No 184
>PRK05717 oxidoreductase; Validated
Probab=53.07 E-value=62 Score=33.38 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+...++|.|.+ ..|..++++|.+.+. .++++ +++++..+++.+.. +.++.++.+|.++.+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-------------~v~~~-~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-------------QVVLA-DLDRERGSKVAKAL-----GENAWFIAMDVADEA 69 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-------------EEEEE-cCCHHHHHHHHHHc-----CCceEEEEccCCCHH
Confidence 34578899974 689999999987544 46555 55554444443322 234666789999988
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 70 ~~~~~ 74 (255)
T PRK05717 70 QVAAG 74 (255)
T ss_pred HHHHH
Confidence 77553
No 185
>PRK07775 short chain dehydrogenase; Provisional
Probab=53.02 E-value=62 Score=33.95 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=49.4
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
.+.+++|.|.+ -.|..++++|.+.+. .|+++ .++.+..+++....... +.++.+..+|.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 72 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-------------PVALG-ARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPD 72 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence 35689999964 589999999987544 45544 45454444443322111 335666789999998
Q ss_pred HHHhcc------ccccCeEEEec
Q 004328 275 SYERAA------ANKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~------~~~A~avIIl~ 291 (761)
.++++- ....+.+|-.+
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~A 95 (274)
T PRK07775 73 SVKSFVAQAEEALGEIEVLVSGA 95 (274)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 887532 12456655444
No 186
>PRK09134 short chain dehydrogenase; Provisional
Probab=53.00 E-value=64 Score=33.35 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=43.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .++++...+.+..+.+....... +.++.++.+|.++.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~ 73 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF-------------DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAE 73 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence 45788999764 89999999987554 45555444444444444322111 3456667899999887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 74 ~~~~ 77 (258)
T PRK09134 74 VRAL 77 (258)
T ss_pred HHHH
Confidence 7765
No 187
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.99 E-value=59 Score=33.26 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
...++|.|.+. .|..++++|.+.+. .|++. .++++.++++.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-------------~V~~~-~r~~~~l~~~~~ 47 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-------------TLILC-DQDQSALKDTYE 47 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-------------EEEEE-cCCHHHHHHHHH
Confidence 46789999886 88999999987544 45544 677777766544
No 188
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.92 E-value=25 Score=36.45 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=44.2
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|.+. .+..+++.|. ..|..|.+++..+ +..+.+. ..+++..+.++++|.++.+.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~---~~G~~V~~~~r~~--~~~~~~~----~~~~~~~~~~~~~D~~~~~~v~~~ 66 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA---AEGWRVGAYDINE--AGLAALA----AELGAGNAWTGALDVTDRAAWDAA 66 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH---HCCCeEEEEeCCH--HHHHHHH----HHhcCCceEEEEecCCCHHHHHHH
Confidence 5789999875 5888999985 3578888887532 2222221 112245678899999999998876
No 189
>PRK06180 short chain dehydrogenase; Provisional
Probab=52.79 E-value=52 Score=34.52 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=43.7
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|...+. .|+++ +++++..+.+.... +.++.++.+|.++++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~l~~~~-----~~~~~~~~~D~~d~~~ 64 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-------------RVVGT-VRSEAARADFEALH-----PDRALARLLDVTDFDA 64 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-------------EEEEE-eCCHHHHHHHHhhc-----CCCeeEEEccCCCHHH
Confidence 3568999975 589999999987544 45555 66666665554321 2345667899999888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
+.++
T Consensus 65 ~~~~ 68 (277)
T PRK06180 65 IDAV 68 (277)
T ss_pred HHHH
Confidence 7654
No 190
>PRK06114 short chain dehydrogenase; Provisional
Probab=52.69 E-value=65 Score=33.23 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=41.4
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .++++.-.+++.++++.+..... +.++.++.+|.++++.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 72 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA-------------DVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKAD 72 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 45778888754 79999999987654 46655322333344443322111 3345566788888877
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 73 i~~~ 76 (254)
T PRK06114 73 LRAA 76 (254)
T ss_pred HHHH
Confidence 7654
No 191
>PRK07825 short chain dehydrogenase; Provisional
Probab=52.29 E-value=57 Score=34.07 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .++ +.+++++.++++.+.. + ++.++.+|.++++.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-------------~v~-~~~r~~~~~~~~~~~~-----~-~~~~~~~D~~~~~~ 64 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-------------RVA-IGDLDEALAKETAAEL-----G-LVVGGPLDVTDPAS 64 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEE-EEECCHHHHHHHHHHh-----c-cceEEEccCCCHHH
Confidence 3578999985 489999999987544 454 4467777776655432 1 24556789999887
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 65 ~~~ 67 (273)
T PRK07825 65 FAA 67 (273)
T ss_pred HHH
Confidence 654
No 192
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.07 E-value=76 Score=32.07 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=49.7
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|. |..|..++++|.+.+. .++++...+.+..+.+.+..... +.++.++.+|..+.+.+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v 71 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGA-------------DVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAAL 71 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHH
Confidence 46888876 5689999999987655 45555555555444444322111 33466678999999887
Q ss_pred Hhccc------cccCeEEEecC
Q 004328 277 ERAAA------NKARAIIILPT 292 (761)
Q Consensus 277 ~ra~~------~~A~avIIl~~ 292 (761)
+++-. ..-+.+|-++.
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 72 EAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 76521 34576665543
No 193
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=52.04 E-value=56 Score=33.84 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=46.8
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCC-HH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTL-TK 274 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~-~~ 274 (761)
...++|+|. |..|..++++|...+. .|+.+. ++++..+.... . +.++.++.||..+ .+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~-------------~V~~~~-R~~~~~~~~~~----~--~~~~~~~~~Dl~d~~~ 76 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF-------------AVKAGV-RDVDKAKTSLP----Q--DPSLQIVRADVTEGSD 76 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-------------EEEEEe-cCHHHHHHhcc----c--CCceEEEEeeCCCCHH
Confidence 456889995 7899999999987544 455553 44433333221 1 2245567899987 46
Q ss_pred HHHhccccccCeEEEec
Q 004328 275 SYERAAANKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~ 291 (761)
.+.++-...++.||..+
T Consensus 77 ~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 77 KLVEAIGDDSDAVICAT 93 (251)
T ss_pred HHHHHhhcCCCEEEECC
Confidence 66554324788777654
No 194
>PRK07035 short chain dehydrogenase; Provisional
Probab=51.92 E-value=68 Score=32.92 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.+.++|.|.+. .|..++++|.+.+. .|+++ +++.+..+++.++.... +.++.++..|.++.+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-------------HVIVS-SRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQ 71 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence 46789999765 79999999987544 56655 66666666655433111 2344556777777776
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 72 ~~~ 74 (252)
T PRK07035 72 IDA 74 (252)
T ss_pred HHH
Confidence 654
No 195
>PRK06198 short chain dehydrogenase; Provisional
Probab=51.69 E-value=73 Score=32.80 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=49.0
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....++|.|.+ ..|..++++|.+.+. ..|+++ +++.+..+........ .+.++.++.+|.++++
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~------------~~V~~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~ 69 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA------------AGLVIC-GRNAEKGEAQAAELEA--LGAKAVFVQADLSDVE 69 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC------------CeEEEE-cCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHH
Confidence 34678999975 588999999987544 125544 6665545443332211 1345666789999988
Q ss_pred HHHhcc------ccccCeEEEec
Q 004328 275 SYERAA------ANKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~------~~~A~avIIl~ 291 (761)
.+.++- ....+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~g~id~li~~a 92 (260)
T PRK06198 70 DCRRVVAAADEAFGRLDALVNAA 92 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 776642 12456555443
No 196
>PRK06437 hypothetical protein; Provisional
Probab=51.65 E-value=32 Score=28.27 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.9
Q ss_pred CCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEec
Q 004328 386 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 432 (761)
Q Consensus 386 ~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~ 432 (761)
.+.|+.|+...+. ..--+++.+||+++ | .++.|++||++-++-.
T Consensus 19 ~~~tv~dLL~~Lgi~~~~vaV~vNg~iv--~-~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 19 HELTVNDIIKDLGLDEEEYVVIVNGSPV--L-EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEEC--C-CceEcCCCCEEEEEec
Confidence 4589999876543 23344666899954 4 8899999999987753
No 197
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.48 E-value=66 Score=33.01 Aligned_cols=79 Identities=6% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|.+ -.|..++++|.+.+. .++++...+++..++..+..... +.++.++.+|.++++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-------------~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~ 67 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-------------DLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAH 67 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHH
Confidence 357888875 488999999987544 46666433444444333322111 33566778999998877
Q ss_pred Hhcc------ccccCeEEEec
Q 004328 277 ERAA------ANKARAIIILP 291 (761)
Q Consensus 277 ~ra~------~~~A~avIIl~ 291 (761)
.++- ....+.+|-.+
T Consensus 68 ~~~~~~~~~~~~~id~vi~~a 88 (256)
T PRK12745 68 EAMLDAAQAAWGRIDCLVNNA 88 (256)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 6541 13467655443
No 198
>PRK04017 hypothetical protein; Provisional
Probab=51.46 E-value=87 Score=29.56 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=40.7
Q ss_pred cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhccccccCeE
Q 004328 208 HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAI 287 (761)
Q Consensus 208 ~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra~~~~A~av 287 (761)
....++++|.+..+ .| ..|||-.-.|.+.+.++. . ..+++..+|.+..... ++. +.+.+.|
T Consensus 8 ~~~e~i~~L~e~s~----~g------~vIVVEGk~D~~~L~~lG----v---~~~iI~t~g~~~~~~~-e~i-a~~~r~V 68 (132)
T PRK04017 8 RFEEIIEELKEFSE----AG------APIIVEGKRDVESLRKLG----V---EGEIIKVSRTPLAEIA-ELI-ASRGKEV 68 (132)
T ss_pred HHHHHHHHHHHhcC----CC------CEEEEeCccHHHHHHHcC----C---CccEEEECCeecchHH-HHH-HhcCCeE
Confidence 34667888887655 12 123332224565555431 1 2356667888887777 666 6688889
Q ss_pred EEecCCC
Q 004328 288 IILPTKG 294 (761)
Q Consensus 288 IIl~~~~ 294 (761)
||+++.+
T Consensus 69 IILTD~D 75 (132)
T PRK04017 69 IILTDFD 75 (132)
T ss_pred EEEECCC
Confidence 9998643
No 199
>PRK08309 short chain dehydrogenase; Provisional
Probab=51.13 E-value=70 Score=31.65 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=40.2
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
+++|.|.+..+..++++|...+. .|++. .++++..+.+...... ..++.+..+|..+++.+++
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-------------~V~v~-~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~ 64 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-------------HVSVI-ARREVKLENVKRESTT---PESITPLPLDYHDDDALKL 64 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-------------EEEEE-ECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHH
Confidence 68999987666778888887544 45554 5666666655432211 1235556677777776655
Q ss_pred c
Q 004328 279 A 279 (761)
Q Consensus 279 a 279 (761)
+
T Consensus 65 ~ 65 (177)
T PRK08309 65 A 65 (177)
T ss_pred H
Confidence 4
No 200
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.88 E-value=70 Score=34.31 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=43.9
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCC-ChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~-~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
....++|.|.+. .|..++++|.+.+. .+|+. +. +.+..+++.+.... .+.++.+..+|.++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-------------~Vv~~-~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dv~d~ 74 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-------------TVVVN-DVASALDASDVLDEIRA--AGAKAVAVAGDISQR 74 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEe-cCCchhHHHHHHHHHHh--cCCeEEEEeCCCCCH
Confidence 356788888765 89999999987544 45554 43 33344444333211 145677788999998
Q ss_pred HHHHhc
Q 004328 274 KSYERA 279 (761)
Q Consensus 274 ~~L~ra 279 (761)
+.++++
T Consensus 75 ~~~~~~ 80 (306)
T PRK07792 75 ATADEL 80 (306)
T ss_pred HHHHHH
Confidence 877764
No 201
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=50.78 E-value=56 Score=33.16 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=40.0
Q ss_pred EEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
++|.|.+ -.|..++++|.+.+. .+++++..+++..+.+.+..... +.++.++.+|.++.+.+++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~ 65 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------------EICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRT 65 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHH
Confidence 4667754 589999999987544 46666545444444444332111 3456667888888877655
Q ss_pred c
Q 004328 279 A 279 (761)
Q Consensus 279 a 279 (761)
+
T Consensus 66 ~ 66 (239)
T TIGR01831 66 L 66 (239)
T ss_pred H
Confidence 4
No 202
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=50.72 E-value=66 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHh
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 253 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~ 253 (761)
..-++|+|.|+.+..=++-|..++. .++|+++.-.+++..+.++
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga-------------~v~Vvs~~~~~el~~~~~~ 55 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA-------------DVTVVSPEFEPELKALIEE 55 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-------------EEEEEcCCccHHHHHHHHh
Confidence 5578999999999998888887654 5777877656667766653
No 203
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=50.72 E-value=1.5e+02 Score=33.66 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=63.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
....++|+|.|..|..+++.|...+. ..|++. +++++..+.+...+ +.+ ....++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~------------~~V~v~-~r~~~ra~~la~~~-----g~~-------~~~~~~ 235 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV------------RKITVA-NRTLERAEELAEEF-----GGE-------AIPLDE 235 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC------------CeEEEE-eCCHHHHHHHHHHc-----CCc-------EeeHHH
Confidence 35789999999999999999976443 245544 67766666665543 211 122344
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHH-HhhcCCCeEEEch
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVE 346 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~-l~~~g~d~Vi~~~ 346 (761)
+.+ .+..||.|| .++..+..-.+...+...+.-+. ....+++=+..|.+.+. +....+-.++..+
T Consensus 236 ~~~-~l~~aDvVI-~aT~s~~~~i~~~~l~~~~~~~~----~~~~vviDla~Prdid~~v~~l~~v~l~~vD 301 (423)
T PRK00045 236 LPE-ALAEADIVI-SSTGAPHPIIGKGMVERALKARR----HRPLLLVDLAVPRDIEPEVGELPGVYLYDVD 301 (423)
T ss_pred HHH-HhccCCEEE-ECCCCCCcEEcHHHHHHHHhhcc----CCCeEEEEeCCCCCCcccccccCCeEEEEHH
Confidence 443 246789554 44433321223444444332111 11235667777776542 3222222345554
No 204
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=50.58 E-value=36 Score=34.78 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=41.8
Q ss_pred EEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 502 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 502 iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
|+|.|. |..+..+++.|.+ ++..|.++...+..++...+. -.+..+ +.||..|.+.|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~------~~g~~v--v~~d~~~~~~l~~a 61 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQ------ALGAEV--VEADYDDPESLVAA 61 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHH------HTTTEE--EES-TT-HHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhh------cccceE--eecccCCHHHHHHH
Confidence 578886 7889999999976 677888888755444433331 124444 79999999999987
No 205
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=50.53 E-value=39 Score=27.94 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEec
Q 004328 386 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 432 (761)
Q Consensus 386 ~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~ 432 (761)
.|.|..|+...+. ..-.+++..||++. +.++.|++||++-++-.
T Consensus 22 ~~~tv~~ll~~l~~~~~~v~v~vNg~iv---~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 22 KGMKVADILRAVGFNTESAIAKVNGKVA---LEDDPVKDGDYVEVIPV 66 (70)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEEC---CCCcCcCCCCEEEEEcc
Confidence 3689999876643 23346777799964 46899999999987643
No 206
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=50.46 E-value=72 Score=34.39 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=42.8
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++.+..+++.+.... .+.++.++.+|.++.+.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~ 69 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-------------HVIMA-CRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDS 69 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHH
Confidence 46789999754 89999999987654 46555 5666666655443311 12345556777777776
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 70 v~~~ 73 (322)
T PRK07453 70 VRRF 73 (322)
T ss_pred HHHH
Confidence 6554
No 207
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=50.35 E-value=72 Score=34.43 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=41.8
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcc-cccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~-~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+.+++|.|.+. .|..++++|...+ . .|++. .++.+..+++.+.... .+.++.+..+|.++.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-------------~V~l~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~ 66 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-------------HVIMA-CRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLD 66 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-------------EEEEE-eCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHH
Confidence 56889999876 7899999998765 3 45544 5666666655443311 1233444566776666
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
..+++
T Consensus 67 ~v~~~ 71 (314)
T TIGR01289 67 SVRQF 71 (314)
T ss_pred HHHHH
Confidence 65543
No 208
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=50.27 E-value=70 Score=32.94 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.5
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+-++|.|.+ ..|..+++.|.+.+. .++++ ++++...+++.+.......+.++.++.+|.++++.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i 68 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-------------RVAVA-DINSEKAANVAQEINAEYGEGMAYGFGADATSEQSV 68 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHH
Confidence 347888875 479999999987543 45544 666655555443321111113466678888888877
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 69 ~~~ 71 (259)
T PRK12384 69 LAL 71 (259)
T ss_pred HHH
Confidence 655
No 209
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=50.09 E-value=65 Score=32.91 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|. |..|..++++|.+.+. .|+++ +++++..+++...... .+.++..+.+|.+++++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~ 66 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGA-------------NVVVN-DLGEAGAEAAAKVATD--AGGSVIYLVADVTKEDEIA 66 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHH
Confidence 4788885 5689999999987544 45554 6666655555433211 1345667789999988664
Q ss_pred h
Q 004328 278 R 278 (761)
Q Consensus 278 r 278 (761)
+
T Consensus 67 ~ 67 (255)
T TIGR01963 67 D 67 (255)
T ss_pred H
Confidence 4
No 210
>PRK12827 short chain dehydrogenase; Provisional
Probab=50.08 E-value=73 Score=32.35 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=49.9
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEe---CCChhHHHHHHHhhcccCCCceEEEEeCCCCC
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLS---DLPRKQMDKLAENIAKDLNHIDILSKSCSLTL 272 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~---d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~ 272 (761)
...++|.|.+ -.|..++++|.+.+. .++++. .++.+..+++.++... .+.++.++.+|..+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~ 70 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-------------DVIVLDIHPMRGRAEADAVAAGIEA--AGGKALGLAFDVRD 70 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------eEEEEcCcccccHHHHHHHHHHHHh--cCCcEEEEEccCCC
Confidence 4678999975 588999999987654 455542 1234444444333211 13456677899999
Q ss_pred HHHHHhccc------cccCeEEEec
Q 004328 273 TKSYERAAA------NKARAIIILP 291 (761)
Q Consensus 273 ~~~L~ra~~------~~A~avIIl~ 291 (761)
++.++++-- ...+.+|-.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~vi~~a 95 (249)
T PRK12827 71 FAATRAALDAGVEEFGRLDILVNNA 95 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECC
Confidence 988876531 3467665544
No 211
>PRK05875 short chain dehydrogenase; Provisional
Probab=49.98 E-value=87 Score=32.67 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+...+.......+.++.++.+|..+++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-------------AVMIV-GRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHH
Confidence 578899997 5689999999987554 45555 56665555544332111012346667899998887
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|..+
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 766421 2467666554
No 212
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=49.97 E-value=1.4e+02 Score=30.70 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=41.0
Q ss_pred CCCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCC-HHhHHhh
Q 004328 498 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN-FETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~-~~~L~~a 572 (761)
..++++|+|. |..+..++++|.+ .|..|+.+...+ ++.... .. .+..+.++.||.++ .+.+.++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~----~~--~~~~~~~~~~Dl~d~~~~l~~~ 81 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTS----LP--QDPSLQIVRADVTEGSDKLVEA 81 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHh----cc--cCCceEEEEeeCCCCHHHHHHH
Confidence 3478999996 7789999999954 467777776532 221111 01 12246679999998 4556554
No 213
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=49.97 E-value=1.9e+02 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 254 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~ 254 (761)
..-.||-|.++ .|...++||.+.+- +||++ .++++.++....+.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~-------------nvvLI-sRt~~KL~~v~kEI 93 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGF-------------NVVLI-SRTQEKLEAVAKEI 93 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHH
Confidence 47789999987 89999999988554 67766 57888888766543
No 214
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=49.92 E-value=68 Score=33.12 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCC-hhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++ .+..++..+.. +.++.++.+|.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~ 68 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA-------------DIVGV-GVAEAPETQAQVEAL-----GRKFHFITADLIQQK 68 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEe-cCchHHHHHHHHHHc-----CCeEEEEEeCCCCHH
Confidence 45678899765 89999999987654 46555 443 22222222211 345666788888888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
..+++
T Consensus 69 ~~~~~ 73 (251)
T PRK12481 69 DIDSI 73 (251)
T ss_pred HHHHH
Confidence 77655
No 215
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.87 E-value=26 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.5
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 534 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~ 534 (761)
..+++||+|.|+.+..-++.|. ..|..|++++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll---~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL---EAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC---CCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hCCCEEEEECCc
Confidence 3589999999999998888884 568899999985
No 216
>PRK06182 short chain dehydrogenase; Validated
Probab=49.85 E-value=53 Score=34.34 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=48.4
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ .++++.++++.. .++.+..+|.++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~ 60 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-------------TVYGA-ARRVDKMEDLAS--------LGVHPLSLDVTDEAS 60 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHh--------CCCeEEEeeCCCHHH
Confidence 457899997 4589999999987554 45544 666666655432 124456799999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 61 ~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 876532 2567665544
No 217
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.37 E-value=70 Score=32.58 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=43.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. +..|..+++.|.+.+. .|+++ +++++.++...+..... +.++.++.+|.++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-------------~vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 68 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-------------KLALI-DLNQEKLEEAVAECGAL--GTEVRGYAANVTDEED 68 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 468899998 6799999999987543 45544 67666565544332111 3455566788888776
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 69 ~~~ 71 (253)
T PRK08217 69 VEA 71 (253)
T ss_pred HHH
Confidence 553
No 218
>PRK01581 speE spermidine synthase; Validated
Probab=49.27 E-value=1.2e+02 Score=33.89 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhc------cCCCCccceEEEEEECCCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA------IGHGKLKNVQVFHKIGNPLN 565 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~------~~~~~~~~~~V~~i~GD~t~ 565 (761)
.+++||++|.|. |. .++++.++ .+...|++++- +++.-+.... +....+.+.+++.+.||+.+
T Consensus 150 ~PkrVLIIGgGd-G~-tlrelLk~-~~v~~It~VEI--DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~ 218 (374)
T PRK01581 150 DPKRVLILGGGD-GL-ALREVLKY-ETVLHVDLVDL--DGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE 218 (374)
T ss_pred CCCEEEEECCCH-HH-HHHHHHhc-CCCCeEEEEeC--CHHHHHHHHhccccchhccccCCCCceEEEECcHHH
Confidence 468999999884 33 55666554 34568888886 3333222211 11223445567779999985
No 219
>PRK07677 short chain dehydrogenase; Provisional
Probab=49.22 E-value=64 Score=33.22 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=42.3
Q ss_pred eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|.+. .|..++++|.+.+. .|++. +++.+..+++.+..... +.++.++.+|.++++.++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~ 66 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGA-------------NVVIT-GRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQ 66 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHH
Confidence 477888765 89999999987544 45544 66665555544332111 235667789998888776
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 67 ~~ 68 (252)
T PRK07677 67 KM 68 (252)
T ss_pred HH
Confidence 63
No 220
>PRK08226 short chain dehydrogenase; Provisional
Probab=49.01 E-value=80 Score=32.63 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=42.5
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+. .|..+++.|.+.+. .|+++ +++.+ .++..+.... .+.++.++.+|.++++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-------------~Vv~~-~r~~~-~~~~~~~~~~--~~~~~~~~~~Dl~~~~ 67 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-------------NLILL-DISPE-IEKLADELCG--RGHRCTAVVADVRDPA 67 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEe-cCCHH-HHHHHHHHHH--hCCceEEEECCCCCHH
Confidence 357889999754 89999999987654 46555 55543 2222222111 1345666789999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 68 ~v~~~ 72 (263)
T PRK08226 68 SVAAA 72 (263)
T ss_pred HHHHH
Confidence 87765
No 221
>PRK05872 short chain dehydrogenase; Provisional
Probab=49.01 E-value=74 Score=33.89 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.+.... +.++.+..+|.++.+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-------------KLALV-DLEEAELAALAAELGG---DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHhcC---CCcEEEEEecCCCHH
Confidence 356788999754 89999999987544 45544 6777777776654421 234556678888888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 71 ~v~~~ 75 (296)
T PRK05872 71 AMQAA 75 (296)
T ss_pred HHHHH
Confidence 77664
No 222
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=48.70 E-value=92 Score=31.55 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|. +..|..++++|.+.+. .| ++.+++.+.++++.... +.++.++.+|.++.+.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-------------~v-~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-------------IV-GLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDE 66 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EE-EEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHH
Confidence 568999996 5589999999987543 34 44466666666654432 2345566789999888
Q ss_pred HHhcc------ccccCeEEEec
Q 004328 276 YERAA------ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~ 291 (761)
++++- ....+.+|-.+
T Consensus 67 ~~~~~~~~~~~~~~id~vi~~a 88 (245)
T PRK12936 67 VKALGQKAEADLEGVDILVNNA 88 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 87652 23456555443
No 223
>PLN02650 dihydroflavonol-4-reductase
Probab=48.66 E-value=63 Score=35.28 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=50.0
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
+.+|+|.|. |-.|..++++|.+.+. .|+++. ++.+..+.+.........+.++.++.||..+.+.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-------------~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~ 70 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-------------TVRATV-RDPANVKKVKHLLDLPGATTRLTLWKADLAVEGS 70 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-------------EEEEEE-cCcchhHHHHHHHhccCCCCceEEEEecCCChhh
Confidence 568999996 6799999999988654 455443 3333233221111000001245667899999988
Q ss_pred HHhccccccCeEEEecC
Q 004328 276 YERAAANKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~ 292 (761)
++++ ++.++.||-++.
T Consensus 71 ~~~~-~~~~d~ViH~A~ 86 (351)
T PLN02650 71 FDDA-IRGCTGVFHVAT 86 (351)
T ss_pred HHHH-HhCCCEEEEeCC
Confidence 8765 456787777764
No 224
>PRK06924 short chain dehydrogenase; Provisional
Probab=48.60 E-value=46 Score=34.12 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=43.3
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++++|.|.+ ..+..++++|.+ .|..|.+++..+.+...... .. .+.+++++.+|.++.+.+++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~~~~~~~~-----~~-~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTENKELTKLA-----EQ-YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCchHHHHHHH-----hc-cCCceEEEEecCCCHHHHHHH
Confidence 478999975 578899999964 57788888764422222111 11 133567789999999998775
No 225
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.41 E-value=1.4e+02 Score=32.47 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=43.1
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..|++|.|-++ .+..++.++...++ +|.+++ ++.+.++++.+.........+|-|.++|..+.+
T Consensus 33 ~~hi~itggS~glgl~la~e~~~~ga-------------~Vti~a-r~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~ 97 (331)
T KOG1210|consen 33 RRHILITGGSSGLGLALALECKREGA-------------DVTITA-RSGKKLLEAKAELELLTQVEDVSYKSVDVIDYD 97 (331)
T ss_pred cceEEEecCcchhhHHHHHHHHHccC-------------ceEEEe-ccHHHHHHHHhhhhhhhccceeeEeccccccHH
Confidence 48999999886 67888888887655 567664 667667776655433333344777787764443
No 226
>PRK05993 short chain dehydrogenase; Provisional
Probab=47.87 E-value=57 Score=34.28 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=42.1
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |..|..++++|.+.+. .|+++ +++++.++++.+. + +.++.+|.++.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-------------~Vi~~-~r~~~~~~~l~~~------~--~~~~~~Dl~d~~~ 61 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-------------RVFAT-CRKEEDVAALEAE------G--LEAFQLDYAEPES 61 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHC------C--ceEEEccCCCHHH
Confidence 357999998 4589999999987544 45544 6666666655421 2 3456799999887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 62 ~~~~ 65 (277)
T PRK05993 62 IAAL 65 (277)
T ss_pred HHHH
Confidence 7654
No 227
>PRK05599 hypothetical protein; Provisional
Probab=47.79 E-value=66 Score=33.17 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=41.5
Q ss_pred eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|.+. .|..++++|.+ +. .++++ .++++.++++.++... ..+..+.++.+|.++++.++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~-------------~Vil~-~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~ 65 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GE-------------DVVLA-ARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHR 65 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CC-------------EEEEE-eCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHH
Confidence 478899876 88999999873 32 45544 6777777766554311 11123556678888877766
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 66 ~~ 67 (246)
T PRK05599 66 EL 67 (246)
T ss_pred HH
Confidence 54
No 228
>PLN02583 cinnamoyl-CoA reductase
Probab=47.68 E-value=1e+02 Score=32.85 Aligned_cols=78 Identities=9% Similarity=-0.005 Sum_probs=48.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCC-ChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~-~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+.+++|.|. |-.|..++++|.+.+. .|+++... ++...++........ +.++.++.||.++.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-------------~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~ 70 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-------------TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYH 70 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-------------EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHH
Confidence 568999997 5689999999998655 45555322 222332222221111 224556789999999
Q ss_pred HHHhccccccCeEEEe
Q 004328 275 SYERAAANKARAIIIL 290 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl 290 (761)
.+..+ +..+++|+-+
T Consensus 71 ~~~~~-l~~~d~v~~~ 85 (297)
T PLN02583 71 SILDA-LKGCSGLFCC 85 (297)
T ss_pred HHHHH-HcCCCEEEEe
Confidence 88765 4467766543
No 229
>PRK08628 short chain dehydrogenase; Provisional
Probab=47.66 E-value=77 Score=32.64 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=47.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .++++ .++++.. ++.+.... .+.++.++.+|.++++.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~-------------~v~~~-~r~~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~ 69 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA-------------IPVIF-GRSAPDD-EFAEELRA--LQPRAEFVQVDLTDDAQ 69 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-------------cEEEE-cCChhhH-HHHHHHHh--cCCceEEEEccCCCHHH
Confidence 4678899875 589999999987544 45555 4444333 22222211 13456677899999888
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ..-+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (258)
T PRK08628 70 CRDAVEQTVAKFGRIDGLVNNA 91 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 776432 2456555444
No 230
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=47.59 E-value=36 Score=36.58 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=45.4
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCC--Cc--eEEEEeCCCCCHH
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLN--HI--DILSKSCSLTLTK 274 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~--~~--~V~~~~Gd~~~~~ 274 (761)
|+|-|. |..|..+++||...+. ..++++ |+++..+-.+.+++...+. +. .+.++.||-.+.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------------~~lil~-d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~ 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------------KKLILF-DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKE 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------------SEEEEE-ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------------CeEEEe-CCChhHHHHHHHHHhhcccccCcccccCceeecccCHH
Confidence 466675 6799999999998654 246655 7888777776665521111 12 3455679988888
Q ss_pred HHHhcc-ccccCeEE
Q 004328 275 SYERAA-ANKARAII 288 (761)
Q Consensus 275 ~L~ra~-~~~A~avI 288 (761)
.|.++= -.+-+.|+
T Consensus 68 ~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 68 RLNRIFEEYKPDIVF 82 (293)
T ss_dssp HHHHHTT--T-SEEE
T ss_pred HHHHHHhhcCCCEEE
Confidence 888773 33566443
No 231
>PRK05884 short chain dehydrogenase; Provisional
Probab=47.58 E-value=58 Score=33.08 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=41.0
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+++|.|. +..|..++++|.+.+. .++++ ++++++.+++.+.. ++.++.+|.++++.++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~ 60 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-------------KVTLV-GARRDDLEVAAKEL-------DVDAIVCDNTDPASLE 60 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhc-------cCcEEecCCCCHHHHH
Confidence 4788887 4589999999987544 45554 67776666654422 1334578999998887
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 61 ~~ 62 (223)
T PRK05884 61 EA 62 (223)
T ss_pred HH
Confidence 65
No 232
>PRK09072 short chain dehydrogenase; Provisional
Probab=47.34 E-value=84 Score=32.52 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=50.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. +-.|..++++|.+.+. .|+++ +++++.++++.... .. +.++.++.+|.++++.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~ 67 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-------------RLLLV-GRNAEKLEALAARL-PY--PGRHRWVVADLTSEAG 67 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHH
Confidence 456889996 4589999999987544 45555 67776666655432 11 2346667889998887
Q ss_pred HHhcc-----ccccCeEEEec
Q 004328 276 YERAA-----ANKARAIIILP 291 (761)
Q Consensus 276 L~ra~-----~~~A~avIIl~ 291 (761)
++++- ....+.+|..+
T Consensus 68 ~~~~~~~~~~~~~id~lv~~a 88 (263)
T PRK09072 68 REAVLARAREMGGINVLINNA 88 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 66542 23456665544
No 233
>PRK06125 short chain dehydrogenase; Provisional
Probab=47.33 E-value=82 Score=32.54 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+..... .+.++.++.+|.++++.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-------------HLHLV-ARDADALEALAADLRAA-HGVDVAVHALDLSSPEA 71 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHH
Confidence 4677888875 589999999987543 45555 66666565544333111 13456667788888877
Q ss_pred HHhcc--ccccCeEEE
Q 004328 276 YERAA--ANKARAIII 289 (761)
Q Consensus 276 L~ra~--~~~A~avII 289 (761)
++++- ....+.+|-
T Consensus 72 ~~~~~~~~g~id~lv~ 87 (259)
T PRK06125 72 REQLAAEAGDIDILVN 87 (259)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 66542 234554443
No 234
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=46.92 E-value=1e+02 Score=31.29 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=40.5
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCC-hhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
.+++|.|. +..|..++++|.+.+. .++++ +++ .+..+++...... .+.++.++.+|..+.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 66 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-------------RVIAT-YFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEE 66 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHH
Confidence 46788875 4589999999987543 45544 443 3333333322211 13456677899999887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 67 v~~~ 70 (245)
T PRK12824 67 CAEA 70 (245)
T ss_pred HHHH
Confidence 6654
No 235
>PRK06123 short chain dehydrogenase; Provisional
Probab=46.86 E-value=86 Score=31.95 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=41.0
Q ss_pred CeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.-++|.|.+. .|..++++|.+.+. .+++...++++..+++...... .+.++.++.+|.++++.+
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~ 67 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY-------------AVCLNYLRNRDAAEAVVQAIRR--QGGEALAVAADVADEADV 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------------eEEEecCCCHHHHHHHHHHHHh--CCCcEEEEEeccCCHHHH
Confidence 3578889765 88999999987543 4554422444444443332211 133456678888888877
Q ss_pred Hhc
Q 004328 277 ERA 279 (761)
Q Consensus 277 ~ra 279 (761)
+++
T Consensus 68 ~~~ 70 (248)
T PRK06123 68 LRL 70 (248)
T ss_pred HHH
Confidence 765
No 236
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.85 E-value=1e+02 Score=37.96 Aligned_cols=100 Identities=9% Similarity=0.196 Sum_probs=51.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhheeec---cCCCChhHHHHHhhheeeecc-cccccCCcchhhHHHHHHH
Q 004328 87 LFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSS-THLKQRTRVERVIGFILAI 162 (761)
Q Consensus 87 ~~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~~e---~~~~s~~da~w~~~~~~t~~g-~g~~d~t~~~rl~~~~l~l 162 (761)
+|.+++++-...++.+.+++.++++.++-+++..+. ....+|.+++-..+..+ .| ..+.+....+|+++.++..
T Consensus 580 ~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~--~G~~~~~~i~~~~r~LG~~~~~ 657 (798)
T KOG3599|consen 580 QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYI--LGDFCPAEIFHANRILGPLLFL 657 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHH--hccCCccccccCCchHHHHHHH
Confidence 466777777777766666666566666655555553 22455666665332221 22 2233344567666665433
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHc
Q 004328 163 WGI-----LFYSRLLSTMTEQFRNNMQKLRE 188 (761)
Q Consensus 163 ~Gi-----~~fa~li~~i~~~l~~~~~~lr~ 188 (761)
.=+ +++..+.++|-+...+.-+.+.+
T Consensus 658 ~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 658 TYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 222 33344445555555543333333
No 237
>PLN02214 cinnamoyl-CoA reductase
Probab=46.79 E-value=1.1e+02 Score=33.57 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=49.7
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHH-HHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMD-KLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e-~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..+++|.|. |-.|..++++|.+.+. .|+.+. ++.+... ......... ..++.++.||..+.+
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------------~V~~~~-r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~ 73 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------------TVKGTV-RNPDDPKNTHLRELEGG--KERLILCKADLQDYE 73 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------------EEEEEe-CCchhhhHHHHHHhhCC--CCcEEEEecCcCChH
Confidence 457999997 6799999999988654 455553 3322111 111111111 124556789999998
Q ss_pred HHHhccccccCeEEEecCC
Q 004328 275 SYERAAANKARAIIILPTK 293 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~ 293 (761)
.+.++ ++.++.||-++..
T Consensus 74 ~~~~~-~~~~d~Vih~A~~ 91 (342)
T PLN02214 74 ALKAA-IDGCDGVFHTASP 91 (342)
T ss_pred HHHHH-HhcCCEEEEecCC
Confidence 88765 3468887777653
No 238
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.54 E-value=50 Score=33.80 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=43.3
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|. ..|..|.++...+.+........+. . .+.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~---~~G~~V~~~~r~~~~~~~~~~~~l~--~-~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILA---GAGAHVVVNYRQKAPRANKVVAEIE--A-AGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHH---HCCCEEEEEeCCchHhHHHHHHHHH--h-cCCceEEEEcCCCCHHHHHHH
Confidence 4689999984 57889999995 3577887776532221111111110 0 123467799999999988765
No 239
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.51 E-value=2.1e+02 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...-++|-|.|. .|..++.|+.+.+. .+| +.|.+++-.++-.+..... | .+.+-..|-++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-------------~~v-l~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~e 99 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-------------KLV-LWDINKQGNEETVKEIRKI--G-EAKAYTCDISDRE 99 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-------------eEE-EEeccccchHHHHHHHHhc--C-ceeEEEecCCCHH
Confidence 466778888887 78999999987432 344 5576665554433322111 2 3444456666666
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.+.+.
T Consensus 100 ei~~~ 104 (300)
T KOG1201|consen 100 EIYRL 104 (300)
T ss_pred HHHHH
Confidence 65543
No 240
>PLN00203 glutamyl-tRNA reductase
Probab=46.33 E-value=2.3e+02 Score=33.23 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
...++|+|.|..+..+++.|...+. ..|+|. +++.+..+.+.+.+. +..+.+ ...+++
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~------------~~V~V~-nRs~era~~La~~~~----g~~i~~-----~~~~dl 323 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC------------TKMVVV-NRSEERVAALREEFP----DVEIIY-----KPLDEM 323 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC------------CeEEEE-eCCHHHHHHHHHHhC----CCceEe-----ecHhhH
Confidence 5679999999999999999986543 246655 677777777765431 222221 122344
Q ss_pred HhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHH-HhhcCCCeEEEchh
Q 004328 277 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVEN 347 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~-l~~~g~d~Vi~~~~ 347 (761)
.. .+..|+.||. ++.....-.+.+.+..+...+... .+..+++=+.-|.+.+. .....+-.+...++
T Consensus 324 ~~-al~~aDVVIs-AT~s~~pvI~~e~l~~~~~~~~~~--~~~~~~IDLAvPRdIdp~v~~l~~v~lydiDd 391 (519)
T PLN00203 324 LA-CAAEADVVFT-STSSETPLFLKEHVEALPPASDTV--GGKRLFVDISVPRNVGACVSELESARVYNVDD 391 (519)
T ss_pred HH-HHhcCCEEEE-ccCCCCCeeCHHHHHHhhhccccc--CCCeEEEEeCCCCCCccccccCCCCeEEEecc
Confidence 32 3578996554 443321122344444433322211 11124667777776542 33333335666654
No 241
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.26 E-value=1e+02 Score=28.92 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.8
Q ss_pred eEEEEccCccHHHHHHHHHhccc
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
||+|+|.|..|..+++.|...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 68999999999999999988665
No 242
>PRK07791 short chain dehydrogenase; Provisional
Probab=46.23 E-value=91 Score=33.05 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCCh---------hHHHHHHHhhcccCCCceEEEE
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---------KQMDKLAENIAKDLNHIDILSK 266 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~---------~~~e~l~~~~~~~~~~~~V~~~ 266 (761)
...++|.|.+. .|..++++|.+.+. .++++ +.+. +..+++.++.... +.++.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~-------------~vii~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~ 69 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA-------------RVVVN-DIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVAN 69 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEe-eCCccccccccchhHHHHHHHHHHhc--CCceEEE
Confidence 46788888765 78999999987654 45544 4332 4444444332111 3345556
Q ss_pred eCCCCCHHHHHh
Q 004328 267 SCSLTLTKSYER 278 (761)
Q Consensus 267 ~Gd~~~~~~L~r 278 (761)
.+|.++++..++
T Consensus 70 ~~Dv~~~~~v~~ 81 (286)
T PRK07791 70 GDDIADWDGAAN 81 (286)
T ss_pred eCCCCCHHHHHH
Confidence 677777666554
No 243
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=45.78 E-value=27 Score=31.12 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCC
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP 243 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~ 243 (761)
...+++|+|.|+.+..-++.|.+.+. .|.|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-------------~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-------------KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-------------EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEECCch
Confidence 46789999999999999999987654 678886654
No 244
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=45.71 E-value=73 Score=33.15 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=40.6
Q ss_pred eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 199 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 199 HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.++|.|.+. .|..++++|.+.+. .|+++..++++.++.+.+..... .+.++.++.+|.++++.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~-------------~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~~ 67 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY-------------RVVLHYHRSAAAASTLAAELNAR-RPNSAVTCQADLSNSATL 67 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC-------------eEEEEcCCcHHHHHHHHHHHHhc-cCCceEEEEccCCCchhh
Confidence 578889764 89999999987654 46655445555565554433111 123455567888888654
No 245
>PRK07985 oxidoreductase; Provisional
Probab=45.22 E-value=90 Score=33.25 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=41.3
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCC--ChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~--~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
...++|.|.+. .|..++++|.+.+. .+++. .. +.+..+++.+.. .. .+.++.+..+|.+++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~-------------~Vi~~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~Dl~~~ 112 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA-------------DVAIS-YLPVEEEDAQDVKKII-EE-CGRKAVLLPGDLSDE 112 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEe-cCCcchhhHHHHHHHH-HH-cCCeEEEEEccCCCH
Confidence 46789999754 89999999987654 45544 32 223333333221 11 134566678888888
Q ss_pred HHHHhc
Q 004328 274 KSYERA 279 (761)
Q Consensus 274 ~~L~ra 279 (761)
+.+.++
T Consensus 113 ~~~~~~ 118 (294)
T PRK07985 113 KFARSL 118 (294)
T ss_pred HHHHHH
Confidence 877654
No 246
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.98 E-value=1.1e+02 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCCeEEEEccC---ccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVN---SHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~---~~~~~ll~eL~~~~~ 221 (761)
+..+++|.|.+ ..|..++++|.+.+.
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~ 33 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGA 33 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCC
Confidence 35689999986 489999999987654
No 247
>PRK08017 oxidoreductase; Provisional
Probab=44.60 E-value=64 Score=33.10 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.1
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+.++|.|. |..|..++++|.+.+. .++++ +++.+.++.+.+ . + +.++.+|.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~-~-----~--~~~~~~D~~~~~~~ 60 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------------RVLAA-CRKPDDVARMNS-L-----G--FTGILLDLDDPESV 60 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHhHHHHh-C-----C--CeEEEeecCCHHHH
Confidence 46999998 7799999999987543 45544 566655554432 1 2 33456788887765
Q ss_pred Hh
Q 004328 277 ER 278 (761)
Q Consensus 277 ~r 278 (761)
+.
T Consensus 61 ~~ 62 (256)
T PRK08017 61 ER 62 (256)
T ss_pred HH
Confidence 54
No 248
>PRK06701 short chain dehydrogenase; Provisional
Probab=44.54 E-value=1e+02 Score=32.81 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCC-hhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++|.|.+ -.|..++++|.+.+. .++++ .++ ....+.+.+.... .+.++.++.+|.++.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-------------~V~l~-~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-------------DIAIV-YLDEHEDANETKQRVEK--EGVKCLLIPGDVSDEA 109 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCcchHHHHHHHHHHh--cCCeEEEEEccCCCHH
Confidence 4578999875 489999999987654 45544 333 2233333322211 1446777789999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 110 ~~~~~ 114 (290)
T PRK06701 110 FCKDA 114 (290)
T ss_pred HHHHH
Confidence 77654
No 249
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=44.42 E-value=2e+02 Score=32.60 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .++++ +++++..++..... ..++..+.+|.++++.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-------------~Vi~l-~r~~~~l~~~~~~~-----~~~v~~v~~Dvsd~~~ 238 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-------------KVVAL-TSNSDKITLEINGE-----DLPVKTLHWQVGQEAA 238 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHhhc-----CCCeEEEEeeCCCHHH
Confidence 4678999985 489999999987544 46655 45554444322211 1234456789999988
Q ss_pred HHhccccccCeEEEec
Q 004328 276 YERAAANKARAIIILP 291 (761)
Q Consensus 276 L~ra~~~~A~avIIl~ 291 (761)
+++. ..+.|.+|..+
T Consensus 239 v~~~-l~~IDiLInnA 253 (406)
T PRK07424 239 LAEL-LEKVDILIINH 253 (406)
T ss_pred HHHH-hCCCCEEEECC
Confidence 7654 45678665544
No 250
>PLN02253 xanthoxin dehydrogenase
Probab=44.39 E-value=94 Score=32.51 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++++..+++.+.... +.++.+..+|.++++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-------------~v~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~ 80 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-------------KVCIV-DLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDD 80 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHhcC---CCceEEEEeecCCHHH
Confidence 45688998754 89999999987554 46655 5555555555443311 2356667899999888
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- .+.+.+|-.+
T Consensus 81 ~~~~~~~~~~~~g~id~li~~A 102 (280)
T PLN02253 81 VSRAVDFTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 766432 2456555443
No 251
>PRK06484 short chain dehydrogenase; Validated
Probab=44.30 E-value=76 Score=36.78 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=43.6
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.+.. +.++.++.+|.++++.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 329 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-------------RLLII-DRDAEGAKKLAEAL-----GDEHLSVQADITDEAA 329 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCceeEEEccCCCHHH
Confidence 46788999765 79999999987654 45554 67777777665433 2334556778877776
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 330 ~~~~ 333 (520)
T PRK06484 330 VESA 333 (520)
T ss_pred HHHH
Confidence 6553
No 252
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.22 E-value=88 Score=36.65 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=49.0
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...|+|-|. |..|.++++|+.+.+. ..++++ ++++-.+..+..++...+...++.+..||.-|.+-
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p------------~~i~l~-~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~ 316 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP------------KEIILF-SRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDR 316 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC------------CEEEEe-cCchHHHHHHHHHHHhhCCCcceEEEecccccHHH
Confidence 455667775 5799999999998765 356666 67665555544444232224667778899999988
Q ss_pred HHhcc
Q 004328 276 YERAA 280 (761)
Q Consensus 276 L~ra~ 280 (761)
++++=
T Consensus 317 ~~~~~ 321 (588)
T COG1086 317 VERAM 321 (588)
T ss_pred HHHHH
Confidence 88763
No 253
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=44.19 E-value=73 Score=34.07 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=48.2
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhH---HHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ---MDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~---~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
..|+|.|. |-.|..++++|.+.+. .|+++. ++.+. .+.+.. . ... ..++.++.||..++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~-------------~V~~~~-r~~~~~~~~~~~~~-~-~~~-~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGY-------------TVKATV-RDPNDPKKTEHLLA-L-DGA-KERLHLFKANLLEE 67 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCC-------------EEEEEE-cCCCchhhHHHHHh-c-cCC-CCceEEEeccccCc
Confidence 46899995 6799999999988655 455443 32221 222211 0 010 12456678999998
Q ss_pred HHHHhccccccCeEEEecC
Q 004328 274 KSYERAAANKARAIIILPT 292 (761)
Q Consensus 274 ~~L~ra~~~~A~avIIl~~ 292 (761)
+.+.++ ++.++.||-++.
T Consensus 68 ~~~~~~-~~~~d~Vih~A~ 85 (322)
T PLN02662 68 GSFDSV-VDGCEGVFHTAS 85 (322)
T ss_pred chHHHH-HcCCCEEEEeCC
Confidence 887765 446788877765
No 254
>PRK12744 short chain dehydrogenase; Provisional
Probab=43.93 E-value=99 Score=31.85 Aligned_cols=80 Identities=9% Similarity=0.116 Sum_probs=47.5
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCC---ChhHHHHHHHhhcccCCCceEEEEeCCCCC
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL---PRKQMDKLAENIAKDLNHIDILSKSCSLTL 272 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~---~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~ 272 (761)
..+++|.|.+ ..|..+++.|.+.+. .++++... +.+..+++.+.... .+.++.++.+|.++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~-------------~vv~i~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~ 72 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA-------------KAVAIHYNSAASKADAEETVAAVKA--AGAKAVAFQADLTT 72 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-------------cEEEEecCCccchHHHHHHHHHHHH--hCCcEEEEecCcCC
Confidence 4578888865 489999999987544 44555322 23334433332211 13456667899999
Q ss_pred HHHHHhccc------cccCeEEEec
Q 004328 273 TKSYERAAA------NKARAIIILP 291 (761)
Q Consensus 273 ~~~L~ra~~------~~A~avIIl~ 291 (761)
++.++++-. .+-+.+|..+
T Consensus 73 ~~~~~~~~~~~~~~~~~id~li~~a 97 (257)
T PRK12744 73 AAAVEKLFDDAKAAFGRPDIAINTV 97 (257)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEECC
Confidence 988876432 3456555444
No 255
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=43.89 E-value=1.3e+02 Score=30.33 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-+|+|+|.|..|..+++.|...+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 47899999999999999999988654
No 256
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=43.81 E-value=37 Score=39.67 Aligned_cols=63 Identities=8% Similarity=0.047 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhhheeeccC-C-----C--------C------hhHHHHHhhheeeecc-c--ccccCCcchhhHHH
Q 004328 102 VLAVVCFSFVVFGGFLFFKFRDE-T-----Q--------S------LEDCLWEAWACLISSS-T--HLKQRTRVERVIGF 158 (761)
Q Consensus 102 ~ll~~~~~iv~~g~~~~~~~e~~-~-----~--------s------~~da~w~~~~~~t~~g-~--g~~d~t~~~rl~~~ 158 (761)
..+.+.++++++|.+++++.|.. + . . +..|+|.+.++-|++| + -.+.-|+.+.++.+
T Consensus 283 ivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m 362 (559)
T PRK05482 283 AILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLVPL 362 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHH
Confidence 44455567777787777777721 1 1 2 5578888876654444 3 13457889999999
Q ss_pred HHHHHH
Q 004328 159 ILAIWG 164 (761)
Q Consensus 159 ~l~l~G 164 (761)
++|+.|
T Consensus 363 ~lMfIG 368 (559)
T PRK05482 363 LNMQLG 368 (559)
T ss_pred HHHHhC
Confidence 988886
No 257
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=43.76 E-value=1.1e+02 Score=32.91 Aligned_cols=81 Identities=19% Similarity=0.060 Sum_probs=48.8
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. |-.|..++++|...+. .|+++ .++++..+.............++.++.||.++.+.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-------------TINAT-VRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGS 70 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-------------EEEEE-EcCCcchhhHHHHHhccCCCCceEEEeCCCCCchH
Confidence 457899996 5689999999988655 45444 23332222211111000001245567899999998
Q ss_pred HHhccccccCeEEEecC
Q 004328 276 YERAAANKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~ 292 (761)
++++ ++..+.||-++.
T Consensus 71 ~~~~-~~~~d~vih~A~ 86 (325)
T PLN02989 71 FELA-IDGCETVFHTAS 86 (325)
T ss_pred HHHH-HcCCCEEEEeCC
Confidence 8775 456787776664
No 258
>PRK07069 short chain dehydrogenase; Validated
Probab=43.71 E-value=96 Score=31.59 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=39.1
Q ss_pred EEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCC-hhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 200 IIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 200 iII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
++|.|.+ ..|..+++.|.+.+. .++++ +++ .+..+++.+..........+.+..+|.++++.++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 67 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-------------KVFLT-DINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQ 67 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHH
Confidence 6788864 589999999987544 46655 444 5555554433211111122344567888888776
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 68 ~~ 69 (251)
T PRK07069 68 AL 69 (251)
T ss_pred HH
Confidence 53
No 259
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.60 E-value=98 Score=32.17 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCeEEEEccC---ccHHHHHHHHHhcccccccccccccCcceEEEEe--CCChhHHHHHHHhhcccCCCceEEEEeCCCC
Q 004328 197 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLS--DLPRKQMDKLAENIAKDLNHIDILSKSCSLT 271 (761)
Q Consensus 197 ~~HiII~G~~---~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~--d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~ 271 (761)
...++|.|.+ -.|..++++|.+.+. .+++.. +++.+.++++.+.. .+.++.+...|.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-------------~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~ 69 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-------------KLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVT 69 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-------------EEEEecCcccchHHHHHHHHHc----CCCceEEEecCCC
Confidence 4578999985 689999999987654 455442 12334555554432 1234555567777
Q ss_pred CHHHHHh
Q 004328 272 LTKSYER 278 (761)
Q Consensus 272 ~~~~L~r 278 (761)
+++..++
T Consensus 70 d~~~v~~ 76 (257)
T PRK08594 70 SDEEITA 76 (257)
T ss_pred CHHHHHH
Confidence 7666544
No 260
>PRK08263 short chain dehydrogenase; Provisional
Probab=43.52 E-value=98 Score=32.36 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=48.1
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|.+ ..|..++++|.+.+. .|+++ +++++.++++.+.. +.++.+..+|.++++.+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~ 64 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD-------------RVVAT-ARDTATLADLAEKY-----GDRLLPLALDVTDRAAV 64 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHH
Confidence 357788864 589999999977543 45544 67777676655432 22455668999999887
Q ss_pred Hhcc------ccccCeEEEec
Q 004328 277 ERAA------ANKARAIIILP 291 (761)
Q Consensus 277 ~ra~------~~~A~avIIl~ 291 (761)
+++- ....+.+|-.+
T Consensus 65 ~~~~~~~~~~~~~~d~vi~~a 85 (275)
T PRK08263 65 FAAVETAVEHFGRLDIVVNNA 85 (275)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 6541 12456655544
No 261
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=43.52 E-value=1e+02 Score=31.65 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..-++|.|.+. .|..++++|.+.+. .++++ +++.+..+.+....... +.++.++.+|.++.+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-------------~vv~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 74 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-------------SVVVS-DINADAANHVVDEIQQL--GGQAFACRCDITSEQE 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 45677778654 78999999987544 45554 55555555444322111 3356667788888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 75 i~~~ 78 (255)
T PRK06113 75 LSAL 78 (255)
T ss_pred HHHH
Confidence 7654
No 262
>PRK06179 short chain dehydrogenase; Provisional
Probab=43.31 E-value=52 Score=34.25 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=44.8
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ .++++..+. ..++.++.+|.++++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~----------~~~~~~~~~D~~d~~~ 59 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-------------RVFGT-SRNPARAAP----------IPGVELLELDVTDDAS 59 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------------EEEEE-eCChhhccc----------cCCCeeEEeecCCHHH
Confidence 4578999975 489999999987544 45555 555433221 1234456899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 60 ~~~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 60 VQAAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 877532 2356555444
No 263
>PRK12742 oxidoreductase; Provisional
Probab=43.13 E-value=1e+02 Score=31.18 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=39.6
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. +..|..++++|.+.+. .+++....+++..+++..+. + +.++.+|.++.+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~~~-----~--~~~~~~D~~~~~~ 65 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-------------NVRFTYAGSKDAAERLAQET-----G--ATAVQTDSADRDA 65 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEecCCCHHHHHHHHHHh-----C--CeEEecCCCCHHH
Confidence 467899997 4689999999987544 45555334455555554322 2 2335678877776
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
+.++
T Consensus 66 ~~~~ 69 (237)
T PRK12742 66 VIDV 69 (237)
T ss_pred HHHH
Confidence 5543
No 264
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.03 E-value=1e+02 Score=33.54 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=48.3
Q ss_pred CCC-eEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 196 ESD-HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 196 ~~~-HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
.++ -+||.|.+. .|...+++|...+. .|| +..++.+.-++..+.........++.+++.|-++.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-------------~Vv-~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl 98 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-------------HVV-LACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSL 98 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-------------EEE-EEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCH
Confidence 344 677889876 78999999987543 454 55677666666555443334456777788888888
Q ss_pred HHHHhcc
Q 004328 274 KSYERAA 280 (761)
Q Consensus 274 ~~L~ra~ 280 (761)
+..++..
T Consensus 99 ~SV~~fa 105 (314)
T KOG1208|consen 99 KSVRKFA 105 (314)
T ss_pred HHHHHHH
Confidence 7776654
No 265
>PRK07904 short chain dehydrogenase; Provisional
Probab=42.92 E-value=58 Score=33.80 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCCCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 497 GPKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 497 ~~~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+..++++|.|.+. .+..++++|.+. .|..|.++...+.....+...++ ....+.+++++.+|.+|.+..++.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l--~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQM--KAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHH--HhcCCCceEEEEecCCChHHHHHH
Confidence 3567899999886 588899998642 24778887754322122222111 111223577899999998876654
No 266
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=42.77 E-value=85 Score=31.64 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=38.5
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
++|.|. |..+..++++|.+.+. .++++...+.+..+.+.+.. .+ .+.++.++.+|.++++.+++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~~~D~~~~~~~~~ 65 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-------------KVIITYRSSEEGAEEVVEEL-KA-YGVKALGVVCDVSDREDVKA 65 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-------------EEEEEeCCchhHHHHHHHHH-Hh-cCCceEEEEecCCCHHHHHH
Confidence 467775 4588999999987554 45555333333333333222 11 13345667889888887766
Q ss_pred c
Q 004328 279 A 279 (761)
Q Consensus 279 a 279 (761)
+
T Consensus 66 ~ 66 (239)
T TIGR01830 66 V 66 (239)
T ss_pred H
Confidence 4
No 267
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=42.67 E-value=1.1e+02 Score=32.82 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh---hHHHHHHHhhcccCCCceEEEEeCCCCC
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---KQMDKLAENIAKDLNHIDILSKSCSLTL 272 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~---~~~e~l~~~~~~~~~~~~V~~~~Gd~~~ 272 (761)
...+++|+|.|-.+..++..|...+. ..|+|+ +++. +..+++.+++.... ..+.....+..+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~------------~~V~I~-~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~ 189 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA------------KEITIF-NIKDDFYERAEQTAEKIKQEV--PECIVNVYDLND 189 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------------CEEEEE-eCCchHHHHHHHHHHHHhhcC--CCceeEEechhh
Confidence 35689999999999999999987554 247766 5554 45555555442221 122223455555
Q ss_pred HHHHHhccccccCeEEEecC
Q 004328 273 TKSYERAAANKARAIIILPT 292 (761)
Q Consensus 273 ~~~L~ra~~~~A~avIIl~~ 292 (761)
.+.+.. .++.++. ||-++
T Consensus 190 ~~~~~~-~~~~~Di-lINaT 207 (289)
T PRK12548 190 TEKLKA-EIASSDI-LVNAT 207 (289)
T ss_pred hhHHHh-hhccCCE-EEEeC
Confidence 555543 4556784 44444
No 268
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.63 E-value=42 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=32.6
Q ss_pred EEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 004328 200 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 254 (761)
Q Consensus 200 iII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~ 254 (761)
|.|||.|.-|..++..|...++ +|.+. .++++.++.+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-------------~V~l~-~~~~~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-------------EVTLW-GRDEEQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-------------EEEEE-TSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCC-------------EEEEE-eccHHHHHHHHHhC
Confidence 7899999999999999988665 45544 78888888877643
No 269
>PRK00536 speE spermidine synthase; Provisional
Probab=42.62 E-value=64 Score=34.18 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=35.2
Q ss_pred CCCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhcc---CCCCccceEEEEEE
Q 004328 497 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI---GHGKLKNVQVFHKI 560 (761)
Q Consensus 497 ~~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~---~~~~~~~~~V~~i~ 560 (761)
+.+++|||+|+|+- ..++|+.++. .+|++++- +++.-+..+.. ....+.+.++..+.
T Consensus 71 ~~pk~VLIiGGGDG--g~~REvLkh~---~~v~mVeI--D~~Vv~~~k~~lP~~~~~~~DpRv~l~~ 130 (262)
T PRK00536 71 KELKEVLIVDGFDL--ELAHQLFKYD---THVDFVQA--DEKILDSFISFFPHFHEVKNNKNFTHAK 130 (262)
T ss_pred CCCCeEEEEcCCch--HHHHHHHCcC---CeeEEEEC--CHHHHHHHHHHCHHHHHhhcCCCEEEee
Confidence 36799999999987 4678887763 38999885 43333332221 01235555565554
No 270
>PRK06057 short chain dehydrogenase; Provisional
Probab=42.47 E-value=72 Score=32.86 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=41.1
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ ..|..++++|.+.+. .|+++ ++++...+++.+.. +. .+..+|.++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~-----~~--~~~~~D~~~~~~ 65 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-------------TVVVG-DIDPEAGKAAADEV-----GG--LFVPTDVTDEDA 65 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHc-----CC--cEEEeeCCCHHH
Confidence 4679999985 589999999987654 45554 66665555544322 11 235678888877
Q ss_pred HHhcc
Q 004328 276 YERAA 280 (761)
Q Consensus 276 L~ra~ 280 (761)
++++-
T Consensus 66 ~~~~~ 70 (255)
T PRK06057 66 VNALF 70 (255)
T ss_pred HHHHH
Confidence 66543
No 271
>PRK07832 short chain dehydrogenase; Provisional
Probab=42.43 E-value=91 Score=32.56 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=46.3
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|.+ ..|..++++|.+.+. .++++ +++++..+++.++... ..+..+.+..+|.++++.++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-------------~vv~~-~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~ 66 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-------------ELFLT-DRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVA 66 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHH
Confidence 57888875 488999999987544 45554 5666555555433211 11122344678888887766
Q ss_pred hcc------ccccCeEEEec
Q 004328 278 RAA------ANKARAIIILP 291 (761)
Q Consensus 278 ra~------~~~A~avIIl~ 291 (761)
++- ....+.+|-.+
T Consensus 67 ~~~~~~~~~~~~id~lv~~a 86 (272)
T PRK07832 67 AFAADIHAAHGSMDVVMNIA 86 (272)
T ss_pred HHHHHHHHhcCCCCEEEECC
Confidence 432 23467655444
No 272
>PRK07201 short chain dehydrogenase; Provisional
Probab=42.25 E-value=78 Score=37.87 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=52.0
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~ 434 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-------------TVFLV-ARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAA 434 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence 45789999854 89999999987654 46655 66666666655433111 3457777899999988
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ..-+.+|-.+
T Consensus 435 ~~~~~~~~~~~~g~id~li~~A 456 (657)
T PRK07201 435 VDHTVKDILAEHGHVDYLVNNA 456 (657)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 876432 2456554443
No 273
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=42.11 E-value=1e+02 Score=31.10 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=45.6
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
++|.|. +..|..++++|.+.+. .++++...+++..++..+.... .+.++.++.+|.++++.+++
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 67 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGY-------------RVAANCGPNEERAEAWLQEQGA--LGFDFRVVEGDVSSFESCKA 67 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHh--hCCceEEEEecCCCHHHHHH
Confidence 567775 5689999999987654 4555533345545544332211 13356667899999887765
Q ss_pred cc------ccccCeEEEec
Q 004328 279 AA------ANKARAIIILP 291 (761)
Q Consensus 279 a~------~~~A~avIIl~ 291 (761)
+- ....+.||-.+
T Consensus 68 ~~~~~~~~~~~id~vi~~a 86 (242)
T TIGR01829 68 AVAKVEAELGPIDVLVNNA 86 (242)
T ss_pred HHHHHHHHcCCCcEEEECC
Confidence 42 22456555443
No 274
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=41.76 E-value=71 Score=33.78 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=45.4
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCC-----hhHHHHHHHhhcccCCCceEEEEeCCCCC
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-----RKQMDKLAENIAKDLNHIDILSKSCSLTL 272 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-----~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~ 272 (761)
+|+|.|. |-.|..++++|.+.+.. -.|+++ ++. .+.++.+. . ..++.++.||.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-----------~~v~~~-~~~~~~~~~~~~~~~~-----~--~~~~~~~~~Dl~~ 61 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-----------AEVIVL-DKLTYAGNLENLADLE-----D--NPRYRFVKGDIGD 61 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-----------CEEEEe-cCCCcchhhhhhhhhc-----c--CCCcEEEEcCCcC
Confidence 4788897 67999999999875420 145555 321 11222211 1 1235556899999
Q ss_pred HHHHHhccccc--cCeEEEecC
Q 004328 273 TKSYERAAANK--ARAIIILPT 292 (761)
Q Consensus 273 ~~~L~ra~~~~--A~avIIl~~ 292 (761)
++.+.++ ++. ++.||-++.
T Consensus 62 ~~~~~~~-~~~~~~d~vi~~a~ 82 (317)
T TIGR01181 62 RELVSRL-FTEHQPDAVVHFAA 82 (317)
T ss_pred HHHHHHH-HhhcCCCEEEEccc
Confidence 9998776 333 787766664
No 275
>PRK08303 short chain dehydrogenase; Provisional
Probab=41.35 E-value=1.1e+02 Score=32.98 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=40.4
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCC----------hhHHHHHHHhhcccCCCceEEE
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP----------RKQMDKLAENIAKDLNHIDILS 265 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~----------~~~~e~l~~~~~~~~~~~~V~~ 265 (761)
..+++|.|.+. .|..++++|...+. .|++. +++ ++.++++.+..... +.++.+
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~-------------~Vv~~-~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 71 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA-------------TVYVT-GRSTRARRSEYDRPETIEETAELVTAA--GGRGIA 71 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-ecccccccccccccchHHHHHHHHHhc--CCceEE
Confidence 56889999875 89999999987544 45554 443 22333333222111 334555
Q ss_pred EeCCCCCHHHHHhc
Q 004328 266 KSCSLTLTKSYERA 279 (761)
Q Consensus 266 ~~Gd~~~~~~L~ra 279 (761)
+.+|.++++..+++
T Consensus 72 ~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 72 VQVDHLVPEQVRAL 85 (305)
T ss_pred EEcCCCCHHHHHHH
Confidence 67777777766654
No 276
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=41.16 E-value=1.4e+02 Score=33.84 Aligned_cols=91 Identities=11% Similarity=0.256 Sum_probs=43.5
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHhhhheeec---cCCCChhHHHHHhhheeeecccccccCC----cchhhHHHHH
Q 004328 88 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSSTHLKQRT----RVERVIGFIL 160 (761)
Q Consensus 88 ~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~~e---~~~~s~~da~w~~~~~~t~~g~g~~d~t----~~~rl~~~~l 160 (761)
+-+.+.+....++.++++.+++++.++..++..+. ....|+..++...+..+. ...++++.. ..|.++-+..
T Consensus 324 ~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~-g~~~~~~~~~~~~~lg~l~~~~~ 402 (425)
T PF08016_consen 324 LSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLL-GDFDYDELYQANPVLGPLFFFSF 402 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhc-CCCchhhhhcccccHHHHHHHHH
Confidence 45555555555555555554444444444444442 234677777775443332 223555433 3444443333
Q ss_pred HHHHH-HHHHHHHHHHHHHH
Q 004328 161 AIWGI-LFYSRLLSTMTEQF 179 (761)
Q Consensus 161 ~l~Gi-~~fa~li~~i~~~l 179 (761)
+++-+ +++-++++++.+..
T Consensus 403 ~~~~~~illNl~iaIi~~~y 422 (425)
T PF08016_consen 403 MFLVFFILLNLFIAIINDSY 422 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33322 33455555555544
No 277
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=41.11 E-value=1.4e+02 Score=32.96 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCC-EEEEEeC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSD 533 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs-~v~ii~~ 533 (761)
...+|+|+|-|..+..+++.|.. .|. .+++++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~---aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR---AGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH---cCCCEEEEEcC
Confidence 35789999999999999999964 453 7888876
No 278
>PRK07454 short chain dehydrogenase; Provisional
Probab=41.07 E-value=53 Score=33.44 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=43.7
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..++++|.+ .|..|.+++..+ ++..+....+ . . .+.++.++.+|.++.+.+.++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~-~-~-~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQ-DALEALAAEL-R-S-TGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHH-H-h-CCCcEEEEEccCCCHHHHHHH
Confidence 4678999984 578899999964 577888887632 2222221111 0 1 123567799999999988765
No 279
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=40.82 E-value=1e+02 Score=35.03 Aligned_cols=114 Identities=16% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..+++|+|.|..+..+++.|...+. ..|.|. .+..+..+.+.+.+ +. +.....++|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~------------~~I~V~-nRt~~ra~~La~~~-----~~------~~~~~~~~l 236 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP------------KQIMLA-NRTIEKAQKITSAF-----RN------ASAHYLSEL 236 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC------------CEEEEE-CCCHHHHHHHHHHh-----cC------CeEecHHHH
Confidence 5689999999999999999987543 256655 67666667766543 10 122233455
Q ss_pred HhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCC-EEEEEeCcCcHH-HHhhcCCCeEEEchhh
Q 004328 277 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVP-TIVEVSNPNTCE-LLKSLSGLKVEPVENV 348 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~-iIa~v~d~~~~~-~l~~~g~d~Vi~~~~~ 348 (761)
.. .+.+||. ||.++..+..-...+. .. ..| ++.=+.-|.+.+ ......+-.+...+++
T Consensus 237 ~~-~l~~aDi-VI~aT~a~~~vi~~~~---------~~---~~~~~~iDLavPRdidp~v~~l~~v~l~~iDdl 296 (414)
T PRK13940 237 PQ-LIKKADI-IIAAVNVLEYIVTCKY---------VG---DKPRVFIDISIPQALDPKLGELEQNVYYCVDDI 296 (414)
T ss_pred HH-HhccCCE-EEECcCCCCeeECHHH---------hC---CCCeEEEEeCCCCCCCccccCcCCeEEEeHHHH
Confidence 33 3667995 4555544311111111 11 223 466677777654 2433333345565543
No 280
>PRK07024 short chain dehydrogenase; Provisional
Probab=40.49 E-value=69 Score=33.09 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=43.2
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++++|.|.+ ..+..++++|.+ .|..|.+++..+ +...+..... +... ++.++.+|.++.+.+.++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~~---~~~~-~~~~~~~Dl~~~~~i~~~ 68 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARRT-DALQAFAARL---PKAA-RVSVYAADVRDADALAAA 68 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHhc---ccCC-eeEEEEcCCCCHHHHHHH
Confidence 678999866 468899999963 577888887632 2221111111 1112 678899999999988775
No 281
>PRK07060 short chain dehydrogenase; Provisional
Probab=40.31 E-value=90 Score=31.69 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|. +..|..+++.|.+.+. .|+++ +++.+..+++.... + +.++.+|.++.+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~ 67 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-------------RVVAA-ARNAAALDRLAGET-----G--CEPLRLDVGDDAA 67 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----C--CeEEEecCCCHHH
Confidence 467899998 4689999999987544 45555 56666565554321 2 2345688888887
Q ss_pred HHhccc--cccCeEEEec
Q 004328 276 YERAAA--NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~--~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 68 v~~~~~~~~~~d~vi~~a 85 (245)
T PRK07060 68 IRAALAAAGAFDGLVNCA 85 (245)
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 766422 2456555444
No 282
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=40.21 E-value=3e+02 Score=31.46 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYH 220 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~ 220 (761)
+.+++|+|.|+.+..+++.+....
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~ 148 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNP 148 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCc
Confidence 467999999999999999997543
No 283
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=40.16 E-value=1.4e+02 Score=32.34 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=49.3
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|. |-.|..++++|...+.. ..|+++ +++....+.+.+.. . +.++.++.||..+.+.+
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~-----------~~V~~~-~r~~~~~~~~~~~~-~---~~~~~~v~~Dl~d~~~l 68 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNP-----------KKIIIY-SRDELKQWEMQQKF-P---APCLRFFIGDVRDKERL 68 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCC-----------cEEEEE-cCChhHHHHHHHHh-C---CCcEEEEEccCCCHHHH
Confidence 46888886 56999999999875310 145555 55443333333222 1 22456678999999998
Q ss_pred HhccccccCeEEEecC
Q 004328 277 ERAAANKARAIIILPT 292 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~ 292 (761)
.++ ++..+.||-++.
T Consensus 69 ~~~-~~~iD~Vih~Ag 83 (324)
T TIGR03589 69 TRA-LRGVDYVVHAAA 83 (324)
T ss_pred HHH-HhcCCEEEECcc
Confidence 875 456787766554
No 284
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.14 E-value=1.3e+02 Score=30.67 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=47.5
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .+++....+.+..+...... ... +.++.+..+|.++++.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~D~~~~~~ 70 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-------------LVVVNAKKRAEEMNETLKMV-KEN-GGEGIGVLADVSTREG 70 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHH-HHc-CCeeEEEEeccCCHHH
Confidence 45788888654 89999999987554 45544433334443332211 111 3345566788888887
Q ss_pred HHhcc------ccccCeEEEecC
Q 004328 276 YERAA------ANKARAIIILPT 292 (761)
Q Consensus 276 L~ra~------~~~A~avIIl~~ 292 (761)
+.++- ....+.+|-.+.
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag 93 (252)
T PRK06077 71 CETLAKATIDRYGVADILVNNAG 93 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 76542 134576655543
No 285
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=39.84 E-value=1e+02 Score=34.36 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
...++|+|.|..|...++.+...+. .|+++ |++++..+.+...+ +..+. .+..+.+.|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-------------~V~v~-d~~~~~~~~l~~~~-----g~~v~---~~~~~~~~l 224 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-------------TVTIL-DINIDRLRQLDAEF-----GGRIH---TRYSNAYEI 224 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-------------eEEEE-ECCHHHHHHHHHhc-----CceeE---eccCCHHHH
Confidence 4559999999999999999876443 45544 77776666655433 22222 223456677
Q ss_pred HhccccccCeEEEe
Q 004328 277 ERAAANKARAIIIL 290 (761)
Q Consensus 277 ~ra~~~~A~avIIl 290 (761)
.++ +.+||.+|..
T Consensus 225 ~~~-l~~aDvVI~a 237 (370)
T TIGR00518 225 EDA-VKRADLLIGA 237 (370)
T ss_pred HHH-HccCCEEEEc
Confidence 665 6789965543
No 286
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.78 E-value=2.1e+02 Score=31.09 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=65.8
Q ss_pred eEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhcccc
Q 004328 501 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 579 (761)
Q Consensus 501 ~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a 579 (761)
.||++|+ |-.+...+.+|. ..|..|+|+++...--++. +....+.|+.||-.|++.|.+.--+.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll---~~G~~vvV~DNL~~g~~~~---------v~~~~~~f~~gDi~D~~~L~~vf~~~--- 66 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLL---KTGHEVVVLDNLSNGHKIA---------LLKLQFKFYEGDLLDRALLTAVFEEN--- 66 (329)
T ss_pred eEEEecCcchhHHHHHHHHH---HCCCeEEEEecCCCCCHHH---------hhhccCceEEeccccHHHHHHHHHhc---
Confidence 5777776 457888899995 4789999999854433322 12222578999999999999863331
Q ss_pred ccCCCCCCcEEEEEecCCccCC---CcchhhHHHHHHHHHHHHHHhHhCCC
Q 004328 580 FKDGEELPLSIVVISDREWLLG---DPSRADKQSAYSLLLAENICNKLGVK 627 (761)
Q Consensus 580 ~~~d~~~~~siviLsd~~~~~~---~~~~aDa~~l~~~L~~r~l~~~~g~~ 627 (761)
+-| +|+=.+.....++ .|.+==..|+...|.+=+.+.+.|++
T Consensus 67 -~id-----aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~ 111 (329)
T COG1087 67 -KID-----AVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111 (329)
T ss_pred -CCC-----EEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC
Confidence 223 6666654432222 23333355666666665666666654
No 287
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.69 E-value=54 Score=33.81 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=43.4
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|.+ .|..|.++...+ +...+... ...+.++..+.+|.++.+.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~~-~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~ 76 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVSE-AALAATAA-----RLPGAKVTATVADVADPAQVERV 76 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHH-----HHhcCceEEEEccCCCHHHHHHH
Confidence 47899999864 68889999964 577888887632 22211111 11222567799999999988765
No 288
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=39.65 E-value=1.4e+02 Score=32.78 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-+|+|+|.|..|..+++.|...+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv 48 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV 48 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 47889999999999999999988655
No 289
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=39.55 E-value=3e+02 Score=31.21 Aligned_cols=119 Identities=16% Similarity=0.245 Sum_probs=63.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|..|..+++.|...+. ..|++. +++.+..+++.+.+ +... ...++
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~------------~~V~v~-~rs~~ra~~la~~~-----g~~~-------i~~~~ 233 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV------------GKILIA-NRTYERAEDLAKEL-----GGEA-------VKFED 233 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC------------CEEEEE-eCCHHHHHHHHHHc-----CCeE-------eeHHH
Confidence 35789999999999999999987542 146555 66665555555433 1111 12234
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCC-EEEEEeCcCcHHH-HhhcCCCeEEEchh
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVP-TIVEVSNPNTCEL-LKSLSGLKVEPVEN 347 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~-iIa~v~d~~~~~~-l~~~g~d~Vi~~~~ 347 (761)
+.. .+..||.||. ++.....-.+.+.+...+. . .+.| +++=+..|.+.+. .....+-.++.+++
T Consensus 234 l~~-~l~~aDvVi~-aT~s~~~ii~~e~l~~~~~----~--~~~~~~viDla~Prdid~~v~~l~~v~l~~vDd 299 (417)
T TIGR01035 234 LEE-YLAEADIVIS-STGAPHPIVSKEDVERALR----E--RTRPLFIIDIAVPRDVDPAVARLEGVFLYDVDD 299 (417)
T ss_pred HHH-HHhhCCEEEE-CCCCCCceEcHHHHHHHHh----c--CCCCeEEEEeCCCCCCChhhcCcCCeEEEEHHH
Confidence 443 3467995554 4433211223343433222 1 1123 5667777776543 33233334566654
No 290
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=39.25 E-value=1.2e+02 Score=32.49 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh--hHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR--KQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~--~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
...++|.|. |-.|..++++|.+.+. .|+++..... +.++.+.... .. ..++.++.||.+++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-------------~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~~~~~~Dl~~~ 68 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-------------TVKATVRDLTDRKKTEHLLALD--GA-KERLKLFKADLLEE 68 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEEECCCcchHHHHHHHhcc--CC-CCceEEEecCCCCc
Confidence 356889995 6699999999988654 4554433221 2333322110 10 12455678999999
Q ss_pred HHHHhccccccCeEEEecC
Q 004328 274 KSYERAAANKARAIIILPT 292 (761)
Q Consensus 274 ~~L~ra~~~~A~avIIl~~ 292 (761)
+.+.++- +.++.||-++.
T Consensus 69 ~~~~~~~-~~~d~vih~A~ 86 (322)
T PLN02986 69 SSFEQAI-EGCDAVFHTAS 86 (322)
T ss_pred chHHHHH-hCCCEEEEeCC
Confidence 9887663 35787777765
No 291
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=39.19 E-value=2.6e+02 Score=30.14 Aligned_cols=66 Identities=18% Similarity=0.079 Sum_probs=42.3
Q ss_pred CeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|. |-.+..+++.|.+.. .+..|++++..+.. ... +. ..+.+..+.++.||.+|.+.+.++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~~-~~~-~~----~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDELK-QWE-MQ----QKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChhH-HHH-HH----HHhCCCcEEEEEccCCCHHHHHHH
Confidence 57899997 468999999997532 23567777642221 111 10 011123467799999999999876
No 292
>PRK05855 short chain dehydrogenase; Validated
Probab=38.99 E-value=1e+02 Score=35.83 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...+++|.|.+ -.|..++++|.+.+. .|+++ +++.+..+++.+.... .+.++.++.+|.++++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~ 377 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-------------EVVAS-DIDEAAAERTAELIRA--AGAVAHAYRVDVSDAD 377 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHH
Confidence 46789999975 489999999987654 45544 6776666655433211 1345667789999988
Q ss_pred HHHhcc
Q 004328 275 SYERAA 280 (761)
Q Consensus 275 ~L~ra~ 280 (761)
.++++-
T Consensus 378 ~~~~~~ 383 (582)
T PRK05855 378 AMEAFA 383 (582)
T ss_pred HHHHHH
Confidence 776543
No 293
>PLN02591 tryptophan synthase
Probab=38.95 E-value=4.9e+02 Score=27.39 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred EEEEccCc-----cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 200 IIVCGVNS-----HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 200 iII~G~~~-----~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+|+.+|-+ -...+++++.+++. +=|++.|.|.++.+++.+.... .+.+.++..---+.++
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv-------------~GviipDLP~ee~~~~~~~~~~--~gl~~I~lv~Ptt~~~ 145 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGV-------------HGLVVPDLPLEETEALRAEAAK--NGIELVLLTTPTTPTE 145 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCC-------------CEEEeCCCCHHHHHHHHHHHHH--cCCeEEEEeCCCCCHH
Confidence 55666543 23456777776654 2255678888888876654311 2666665553333445
Q ss_pred HHHhccccccCeEEEecCCC---CCccchHHHHHHHHhcCCCCCCCCCCEEE--EEeCcCcHHHHhhcCCCeEEEchhhH
Q 004328 275 SYERAAANKARAIIILPTKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVENVA 349 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~~---d~~e~D~~~l~~vLal~~~~~~~~~~iIa--~v~d~~~~~~l~~~g~d~Vi~~~~~~ 349 (761)
-+++.......-|-..+..+ .+...+.+.-..+-.+|+ ..+.|+++ -++++++...+...|+|-|+.-..+.
T Consensus 146 ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~---~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 146 RMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE---VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh---cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 56665544433333323221 111111221111233333 24788876 77888888889999998877655443
No 294
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=38.75 E-value=48 Score=36.93 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=40.3
Q ss_pred EEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 502 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 502 iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
|+|+|.|..+..+++.|.+... ..+|++.+. ..++.+.+. ..+...++.++.-|..|.+.|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-~~~v~va~r--~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-FEEVTVADR--NPEKAERLA----EKLLGDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-E-EEEEEES--SHHHHHHHH----T--TTTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-CCcEEEEEC--CHHHHHHHH----hhccccceeEEEEecCCHHHHHHH
Confidence 7899999999999999975432 227787776 334433221 222345567799999999999887
No 295
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.67 E-value=2.1e+02 Score=30.36 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
+|.|+|.|..|..++..|...++ +|+++ +++++..+.+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-------------DVTLV-ARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------eEEEE-ECChHHHHHHHH
Confidence 58999999999999999987654 56655 555556666543
No 296
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.47 E-value=1.3e+02 Score=31.07 Aligned_cols=66 Identities=20% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .++++ .++ +..+++.+.. ... +.++.++.+|.++++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~v~~~-~~~-~~~~~~~~~~-~~~-~~~~~~~~~D~~~~~~ 77 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA-------------DIIIT-THG-TNWDETRRLI-EKE-GRKVTFVQVDLTKPES 77 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCC-cHHHHHHHHH-Hhc-CCceEEEEcCCCCHHH
Confidence 45688888764 79999999987654 45544 444 2233332221 111 2346667889888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 78 i~~~ 81 (258)
T PRK06935 78 AEKV 81 (258)
T ss_pred HHHH
Confidence 6653
No 297
>PRK06196 oxidoreductase; Provisional
Probab=38.47 E-value=1.1e+02 Score=32.95 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=48.2
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .|+++ .++.+..+++.+.. . .+.++.+|.++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------------~Vv~~-~R~~~~~~~~~~~l----~--~v~~~~~Dl~d~~~ 85 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------------HVIVP-ARRPDVAREALAGI----D--GVEVVMLDLADLES 85 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh----h--hCeEEEccCCCHHH
Confidence 3578899975 489999999987654 45554 66666666554332 1 14456789998887
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- .+.+.+|-.+
T Consensus 86 v~~~~~~~~~~~~~iD~li~nA 107 (315)
T PRK06196 86 VRAFAERFLDSGRRIDILINNA 107 (315)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 765431 3456554433
No 298
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=38.40 E-value=3.1e+02 Score=29.92 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=63.5
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCC--CCccceEEEEEECCCCCHHhHHhhhhh
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGH--GKLKNVQVFHKIGNPLNFETLKDTIMN 575 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~--~~~~~~~V~~i~GD~t~~~~L~~a~i~ 575 (761)
.++++|.|. |-.|..++++|.+ .|.+|+.++..+.. ....+..... ......++.++.||-++.+.|.++- .
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~-~ 89 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---LNQTVIGLDNFSTG-YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC-K 89 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCCCc-chhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-h
Confidence 468999998 6789999999964 46788888753221 1111100000 0011124778999999998887652 2
Q ss_pred ccccccCCCCCCcEEEEEecCCc---cCCCcchhhHHHHHHHHHHHHHHhHhCCC
Q 004328 576 IQNSFKDGEELPLSIVVISDREW---LLGDPSRADKQSAYSLLLAENICNKLGVK 627 (761)
Q Consensus 576 ~~~a~~~d~~~~~siviLsd~~~---~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 627 (761)
..| .|+=++-... ...++......|+...+.+=..+.+.|.+
T Consensus 90 -----~~d-----~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~ 134 (348)
T PRK15181 90 -----NVD-----YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS 134 (348)
T ss_pred -----CCC-----EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 133 5555543211 01233334445565555555555666654
No 299
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=38.38 E-value=61 Score=29.95 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=19.0
Q ss_pred eEEEEcc-CccHHHHHHHHHhc
Q 004328 199 HIIVCGV-NSHLSFILKQLNKY 219 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~ 219 (761)
+|+|.|+ |+.|..+++.+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~ 23 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES 23 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhc
Confidence 5899999 99999999999874
No 300
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.35 E-value=1e+02 Score=30.68 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 253 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~ 253 (761)
+|-|+|-|-.|..++-.|.+.++ .|+- .|.+++.++.+.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-------------~V~g-~D~~~~~v~~l~~g 42 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-------------QVIG-VDIDEEKVEALNNG 42 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-------------EEEE-E-S-HHHHHHHHTT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-------------EEEE-EeCChHHHHHHhhc
Confidence 57899999999999999988765 4554 48899888887653
No 301
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.63 E-value=31 Score=28.93 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=27.2
Q ss_pred eEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCC
Q 004328 501 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 534 (761)
Q Consensus 501 ~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~ 534 (761)
|++|+|.|..+.+++..|.+ .|.+|+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---LGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH---hCcEEEEEecc
Confidence 68999999999999999965 57899999874
No 302
>PRK08278 short chain dehydrogenase; Provisional
Probab=37.58 E-value=1.3e+02 Score=31.51 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=40.8
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChh-------HHHHHHHhhcccCCCceEEEEeC
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK-------QMDKLAENIAKDLNHIDILSKSC 268 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~-------~~e~l~~~~~~~~~~~~V~~~~G 268 (761)
...++|.|.+. .|..++++|.+.+. .++++ +++.+ .++++.+.... .+.++.+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 69 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA-------------NIVIA-AKTAEPHPKLPGTIHTAAEEIEA--AGGQALPLVG 69 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ecccccccchhhHHHHHHHHHHh--cCCceEEEEe
Confidence 45789999765 88999999987544 46655 43321 12222222211 1345666788
Q ss_pred CCCCHHHHHhc
Q 004328 269 SLTLTKSYERA 279 (761)
Q Consensus 269 d~~~~~~L~ra 279 (761)
|.++++.++++
T Consensus 70 D~~~~~~i~~~ 80 (273)
T PRK08278 70 DVRDEDQVAAA 80 (273)
T ss_pred cCCCHHHHHHH
Confidence 88888877654
No 303
>PRK06194 hypothetical protein; Provisional
Probab=37.55 E-value=73 Score=33.45 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+++||.|.+ ..+..++++|.+ .|..|++++..+ +...+....+ .-.+.++.++.+|.+|.+.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQ-DALDRAVAEL---RAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCCh-HHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 3679999976 478899999963 578888887632 2222222111 01144677899999999999875
No 304
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=37.48 E-value=1.6e+02 Score=30.28 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=39.7
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCC-h-hHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-R-KQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~-~-~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
..+++|.|.+. .|..++++|.+.+. .|+.+ +.. . +..+++. .. +.++.++.+|.++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~Dl~~~ 69 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC-------------DIVGI-NIVEPTETIEQVT-AL-----GRRFLSLTADLRKI 69 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEe-cCcchHHHHHHHH-hc-----CCeEEEEECCCCCH
Confidence 46788999764 89999999987554 45544 432 2 2222221 11 34566678888888
Q ss_pred HHHHhc
Q 004328 274 KSYERA 279 (761)
Q Consensus 274 ~~L~ra 279 (761)
+.++++
T Consensus 70 ~~~~~~ 75 (253)
T PRK08993 70 DGIPAL 75 (253)
T ss_pred HHHHHH
Confidence 777654
No 305
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.48 E-value=5.2e+02 Score=27.34 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=72.6
Q ss_pred eEEEEccCc-----cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 199 HIIVCGVNS-----HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 199 HiII~G~~~-----~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
.+|+.+|-+ -...+++++.+.+. +-|++.|.|.++.+++.+.... +|.+.++... |+.+
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGv-------------dgviipDLP~ee~~~~~~~~~~--~gi~~I~lv~-PtT~ 156 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGV-------------KGLIIPDLPYEESDYLISVCNL--YNIELILLIA-PTSS 156 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCC-------------eEEEecCCCHHHHHHHHHHHHH--cCCCEEEEEC-CCCC
Confidence 456666654 23457777777654 3466778888887776543311 2666665553 5554
Q ss_pred -HHHHhccccccCe-EEEecCCC--CCccchHHHHHHHH-hcCCCCCCCCCCEEE--EEeCcCcHHHHhhcCCCeEEEch
Q 004328 274 -KSYERAAANKARA-IIILPTKG--DRYEVDTDAFLSVL-ALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVE 346 (761)
Q Consensus 274 -~~L~ra~~~~A~a-vIIl~~~~--d~~e~D~~~l~~vL-al~~~~~~~~~~iIa--~v~d~~~~~~l~~~g~d~Vi~~~ 346 (761)
+.+++ =++.|+. |-+++..+ ...+.....+...+ .+|+ ..+.|+++ =+++++..+.+..+|+|-|+.=.
T Consensus 157 ~eri~~-i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~---~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 157 KSRIQK-IARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK---MTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHH-HHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH---hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 45544 4556663 33333322 11111112222222 2222 24678877 67888888889999998776544
Q ss_pred hh
Q 004328 347 NV 348 (761)
Q Consensus 347 ~~ 348 (761)
.+
T Consensus 233 al 234 (263)
T CHL00200 233 AC 234 (263)
T ss_pred HH
Confidence 43
No 306
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.16 E-value=2.6e+02 Score=29.69 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
+|.|+|.|..|..+...|.+.++ +|+++ ++ ++.++.+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-------------~V~~~-~r-~~~~~~~~ 39 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-------------DVTFL-VR-PKRAKALR 39 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-------------ceEEE-ec-HHHHHHHH
Confidence 58999999999999999987654 46655 45 55566554
No 307
>PRK07074 short chain dehydrogenase; Provisional
Probab=37.05 E-value=1.4e+02 Score=30.73 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
-++|.|. +..|..++++|.+.+. .++++ +++++..+.+.+.. .+.++.++.+|..+.+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~-------------~v~~~-~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~ 65 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGD-------------RVLAL-DIDAAALAAFADAL----GDARFVPVACDLTDAASLA 65 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHH
Confidence 4778886 5689999999987543 46555 66666666554432 1334666789999999886
Q ss_pred hcccc------ccCeEEEecC
Q 004328 278 RAAAN------KARAIIILPT 292 (761)
Q Consensus 278 ra~~~------~A~avIIl~~ 292 (761)
++-.+ ..+.+|-.+.
T Consensus 66 ~~~~~~~~~~~~~d~vi~~ag 86 (257)
T PRK07074 66 AALANAAAERGPVDVLVANAG 86 (257)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 54432 4676665553
No 308
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.99 E-value=1.6e+02 Score=29.77 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=43.7
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|.+. .|..++++|.+.+. .|+++ .++++..+.+....... .++.++.+|-.+++.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~ 67 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-------------QVCIN-SRNENKLKRMKKTLSKY---GNIHYVVGDVSSTES 67 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHH
Confidence 46899999854 89999999987554 45554 56666665553332111 135566899998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 68 ~~~~ 71 (238)
T PRK05786 68 ARNV 71 (238)
T ss_pred HHHH
Confidence 7653
No 309
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=36.95 E-value=1.3e+02 Score=29.61 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=40.9
Q ss_pred cCCCeEEEEccCcc-HHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 195 LESDHIIVCGVNSH-LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 195 ~~~~HiII~G~~~~-~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
....+++|+|.|+. +..+++.|...+. .+++. ++..+++.+... ..|+++ ++-+...
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-------------~V~v~-~r~~~~l~~~l~-------~aDiVI-sat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-------------TVTVC-HSKTKNLKEHTK-------QADIVI-VAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-------------EEEEE-ECCchhHHHHHh-------hCCEEE-EcCCCCc
Confidence 35789999999995 7778888876433 45555 555444544333 355543 3333322
Q ss_pred HHHHhccccccCeEEE
Q 004328 274 KSYERAAANKARAIII 289 (761)
Q Consensus 274 ~~L~ra~~~~A~avII 289 (761)
.+.+-.+++.. ++|
T Consensus 100 -ii~~~~~~~~~-viI 113 (168)
T cd01080 100 -LVKGDMVKPGA-VVI 113 (168)
T ss_pred -eecHHHccCCe-EEE
Confidence 45555555543 444
No 310
>PRK07326 short chain dehydrogenase; Provisional
Probab=36.88 E-value=64 Score=32.67 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=43.5
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|. |..+..+++.|.+ .|..|.++...+. ...+....+. .. .+++++.+|.++.+.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~~-~~~~~~~~l~-~~---~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQK-ELEEAAAELN-NK---GNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCHH-HHHHHHHHHh-cc---CcEEEEEccCCCHHHHHHH
Confidence 478999987 5678999999963 5778888875332 2112211111 01 3467799999999988775
No 311
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=36.23 E-value=68 Score=30.04 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=51.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
+-+|-|+|.|+.+..+.+.|...++ .|+-+..++.+.-+++.... ++. ...++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-------------~v~~v~srs~~sa~~a~~~~-------------~~~-~~~~~ 62 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-------------EVVGVYSRSPASAERAAAFI-------------GAG-AILDL 62 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-------------EEEEESSCHH-HHHHHHC---------------TT------T
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEEeCCccccccccccc-------------ccc-ccccc
Confidence 5689999999999999999987665 46666555554445443211 111 11122
Q ss_pred HhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHH---HhhcCC
Q 004328 277 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL---LKSLSG 339 (761)
Q Consensus 277 ~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~---l~~~g~ 339 (761)
.. -+++||.++|..+| | ....+..-|+-.... ....+|+...=.-..+. ++..|+
T Consensus 63 ~~-~~~~aDlv~iavpD-d----aI~~va~~La~~~~~--~~g~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 63 EE-ILRDADLVFIAVPD-D----AIAEVAEQLAQYGAW--RPGQIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp TG-GGCC-SEEEE-S-C-C----HHHHHHHHHHCC--S---TT-EEEES-SS--GGGGHHHHHTT-
T ss_pred cc-ccccCCEEEEEech-H----HHHHHHHHHHHhccC--CCCcEEEECCCCChHHhhhhHHHCCC
Confidence 21 25689966665542 2 233344445533111 23457776655444433 445554
No 312
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=36.16 E-value=1.2e+02 Score=35.59 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCChhHHHHHhhheeeecccc---cccCCcchhhHHHHHHHHHH-HHHHHHH
Q 004328 125 TQSLEDCLWEAWACLISSSTH---LKQRTRVERVIGFILAIWGI-LFYSRLL 172 (761)
Q Consensus 125 ~~s~~da~w~~~~~~t~~g~g---~~d~t~~~rl~~~~l~l~Gi-~~fa~li 172 (761)
...|.+-+|...-.+.+.|.. ..+.|+.++++..++|++|= +.+...+
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~l 500 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVL 500 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999876555555543 34568899998888887775 3333333
No 313
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.11 E-value=1.4e+02 Score=31.03 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=38.5
Q ss_pred CCeEEEEcc---CccHHHHHHHHHhcccccccccccccCcceEEEEeCCC--hhHHHHHHHhhcccCCCceEEEEeCCCC
Q 004328 197 SDHIIVCGV---NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSCSLT 271 (761)
Q Consensus 197 ~~HiII~G~---~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~--~~~~e~l~~~~~~~~~~~~V~~~~Gd~~ 271 (761)
..+++|.|. +-.|..++++|.+.+. .|++ .+++ ++..+++.++. +.++.+...|.+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-------------~v~l-~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~ 67 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-------------EVVL-TGFGRALRLTERIAKRL-----PEPAPVLELDVT 67 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-------------EEEE-ecCccchhHHHHHHHhc-----CCCCcEEeCCCC
Confidence 457899997 4588999999987544 4554 4543 23345544322 113444567777
Q ss_pred CHHHHHhc
Q 004328 272 LTKSYERA 279 (761)
Q Consensus 272 ~~~~L~ra 279 (761)
+++..+++
T Consensus 68 ~~~~i~~~ 75 (256)
T PRK07889 68 NEEHLASL 75 (256)
T ss_pred CHHHHHHH
Confidence 77665544
No 314
>PLN02427 UDP-apiose/xylose synthase
Probab=36.07 E-value=1.3e+02 Score=33.39 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcc-cccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~-~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
+..+|+|.|. |-.|..++++|...+ + .|+.+ +++.+..+.+........ ..++-++.||..+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------------~V~~l-~r~~~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~ 77 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH-------------KVLAL-DVYNDKIKHLLEPDTVPW-SGRIQFHRINIKHD 77 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC-------------EEEEE-ecCchhhhhhhccccccC-CCCeEEEEcCCCCh
Confidence 3457999996 779999999998753 3 46655 444443443321100001 12466678999999
Q ss_pred HHHHhccccccCeEEEecC
Q 004328 274 KSYERAAANKARAIIILPT 292 (761)
Q Consensus 274 ~~L~ra~~~~A~avIIl~~ 292 (761)
+.++++ +..++.||=++.
T Consensus 78 ~~l~~~-~~~~d~ViHlAa 95 (386)
T PLN02427 78 SRLEGL-IKMADLTINLAA 95 (386)
T ss_pred HHHHHH-hhcCCEEEEccc
Confidence 988876 345787665654
No 315
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=36.04 E-value=2.6e+02 Score=28.14 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.6
Q ss_pred CCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeC
Q 004328 499 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSD 533 (761)
Q Consensus 499 ~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~ 533 (761)
..||+|+|-|..+.++++.|....- ..+++++.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV--g~i~lvD~ 51 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI--DSITIVDH 51 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEEC
Confidence 5899999999999999999965421 35888875
No 316
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=35.76 E-value=1.6e+02 Score=29.59 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-||+|+|.|-.|.++++.|...+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV 43 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI 43 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC
Confidence 47899999999999999999988655
No 317
>PRK07074 short chain dehydrogenase; Provisional
Probab=35.71 E-value=70 Score=32.94 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=43.2
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|.+ ..+..+++.|.+ .|..|.++...+ ++.+.+. ..+.+..+.++.+|.++.+.++++
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~~--~~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~ 67 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDIDA--AALAAFA----DALGDARFVPVACDLTDAASLAAA 67 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH----HHhcCCceEEEEecCCCHHHHHHH
Confidence 468888874 678899999963 577888887532 2222221 122334577799999999998765
No 318
>PRK08264 short chain dehydrogenase; Validated
Probab=35.63 E-value=1.1e+02 Score=30.90 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|. |..|..++++|.+.+. ..|+++ .++.+..++ . +.++.++.+|.++.+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~------------~~V~~~-~r~~~~~~~----~-----~~~~~~~~~D~~~~~~ 63 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA------------AKVYAA-ARDPESVTD----L-----GPRVVPLQLDVTDPAS 63 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc------------ccEEEE-ecChhhhhh----c-----CCceEEEEecCCCHHH
Confidence 568899996 5689999999987543 134444 555544332 1 3456677899999888
Q ss_pred HHhccc--cccCeEEEec
Q 004328 276 YERAAA--NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~--~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 64 ~~~~~~~~~~id~vi~~a 81 (238)
T PRK08264 64 VAAAAEAASDVTILVNNA 81 (238)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 776442 2456555444
No 319
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.56 E-value=1.1e+02 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=39.0
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
+++|.|.+ ..|..++++|.+.+. .++++ +++.+. .+... .+.++.++.+|.++.+.++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~-------------~v~~~-~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~ 61 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGI-------------AVLGV-ARSRHP--SLAAA-----AGERLAEVELDLSDAAAAA 61 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCC-------------EEEEE-ecCcch--hhhhc-----cCCeEEEEEeccCCHHHHH
Confidence 68999975 589999999987544 45555 443321 11111 1345667789999998887
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 62 ~~ 63 (243)
T PRK07023 62 AW 63 (243)
T ss_pred HH
Confidence 73
No 320
>PRK09135 pteridine reductase; Provisional
Probab=35.53 E-value=98 Score=31.39 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=44.0
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+++||.|.+. .+..+++.|.+ .|..|.++.....+........+ .......+.++.+|.++.+.+.++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHA---AGYRVAIHYHRSAAEADALAAEL--NALRPGSAAALQADLLDPDALPEL 75 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH--HhhcCCceEEEEcCCCCHHHHHHH
Confidence 36899999864 68899999964 57888888754322111111001 011122467799999999988875
No 321
>PRK08251 short chain dehydrogenase; Provisional
Probab=35.40 E-value=94 Score=31.70 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=44.2
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|... .+..+++.|.+ .|..|.+++..+. ...+....+ ....++..++++.+|.++.+.+.++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~~-~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRTD-RLEELKAEL-LARYPGIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHH-HhhCCCceEEEEEcCCCCHHHHHHH
Confidence 5789998765 57889999964 4678888776432 221111111 1122356788899999999988765
No 322
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.35 E-value=4.4e+02 Score=29.07 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=43.5
Q ss_pred CCCCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 497 GPKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 497 ~~~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..+.+|+|.|. |-.+..+++.|.+ .|.+|+.++..+.. .+ ... ...+.++.||.++.+.+.++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~~----~~----~~~--~~~~~~~~~Dl~d~~~~~~~ 82 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKNE----HM----SED--MFCHEFHLVDLRVMENCLKV 82 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEecccc----cc----ccc--cccceEEECCCCCHHHHHHH
Confidence 35688999998 7789999999964 57788888753211 01 000 11245688999999888775
No 323
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=35.21 E-value=1e+02 Score=33.09 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 254 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~ 254 (761)
...+++|+|.|-.+..++-.|.+.+. .+|+|. .++.+..+++.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~------------~~i~V~-NRt~~ra~~La~~~ 170 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA------------KRITVV-NRTRERAEELADLF 170 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC------------CEEEEE-eCCHHHHHHHHHHh
Confidence 36889999999999999999998764 368877 67787788877655
No 324
>PRK10637 cysG siroheme synthase; Provisional
Probab=35.20 E-value=1.4e+02 Score=34.20 Aligned_cols=70 Identities=10% Similarity=-0.027 Sum_probs=45.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...+++|+|.|+.+..=++.|.+++. .|+|++..-.++++++... -++.++..+. .+++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga-------------~v~visp~~~~~~~~l~~~-------~~i~~~~~~~-~~~d 69 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGA-------------RLTVNALAFIPQFTAWADA-------GMLTLVEGPF-DESL 69 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHhC-------CCEEEEeCCC-ChHH
Confidence 47899999999999888888887654 6888876545556655431 2344445444 3455
Q ss_pred HHhccccccCeEEEecC
Q 004328 276 YERAAANKARAIIILPT 292 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~ 292 (761)
| +.|. +++.++
T Consensus 70 l-----~~~~-lv~~at 80 (457)
T PRK10637 70 L-----DTCW-LAIAAT 80 (457)
T ss_pred h-----CCCE-EEEECC
Confidence 4 4566 444454
No 325
>PLN02583 cinnamoyl-CoA reductase
Probab=35.16 E-value=90 Score=33.28 Aligned_cols=70 Identities=6% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChh-HHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLD-DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIM 574 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~-er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i 574 (761)
.++++|.|.+ -.+..++++|. ..|..|..+...+.. +..+.+..+ .. .+.++.++.||.+|.+.+.++-.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll---~~G~~V~~~~R~~~~~~~~~~~~~l-~~--~~~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLL---SRGYTVHAAVQKNGETEIEKEIRGL-SC--EEERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHH---hCCCEEEEEEcCchhhhHHHHHHhc-cc--CCCceEEEEecCCCHHHHHHHHc
Confidence 4689999975 57999999995 467888877642221 211112111 00 11246678999999999987633
No 326
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=35.08 E-value=1.8e+02 Score=31.01 Aligned_cols=104 Identities=14% Similarity=0.028 Sum_probs=56.2
Q ss_pred EEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEE-EEECCCCCHHhHHhhhhhccccccC
Q 004328 504 LLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVF-HKIGNPLNFETLKDTIMNIQNSFKD 582 (761)
Q Consensus 504 I~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~-~i~GD~t~~~~L~~a~i~~~~a~~~ 582 (761)
.=|.|-.+.+++++|.+... -..|.+++..+...... .+....+. ++.||-+|++.|.++- + .+
T Consensus 3 TGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~--------~~~~~~~~~~~~~Di~d~~~l~~a~-~-----g~ 67 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK--------DLQKSGVKEYIQGDITDPESLEEAL-E-----GV 67 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch--------hhhcccceeEEEeccccHHHHHHHh-c-----CC
Confidence 34566789999999975321 26778777543322211 11222222 7999999999999972 2 23
Q ss_pred CCCCCcEEEEEecC--CccCCCcchhhHHHHHHHHHHHHHHhHhCCC
Q 004328 583 GEELPLSIVVISDR--EWLLGDPSRADKQSAYSLLLAENICNKLGVK 627 (761)
Q Consensus 583 d~~~~~siviLsd~--~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 627 (761)
| .++=++-. .+.....+..-.-|+-..-.+=+.|.+.+++
T Consensus 68 d-----~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 68 D-----VVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred c-----eEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 44444321 1100122233344555555444556666664
No 327
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=35.06 E-value=89 Score=32.38 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.++ .+..++++|. ..|..|.+......+........+ ....+.++.++..|.+|++.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~---~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFA---QSGVNIAFTYNSNVEEANKIAEDL--EQKYGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHH---HCCCEEEEEcCCCHHHHHHHHHHH--HHhcCCceEEEEcCCCCHHHHHHH
Confidence 46889999875 5889999996 367788776543222222211111 111244677899999999988775
No 328
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=35.05 E-value=1.5e+02 Score=30.37 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=40.2
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ ++++. .+++.++.... +.++.+..+|.++++.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-------------~v~~~-~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 70 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-------------RVVLV-DRSEL-VHEVAAELRAA--GGEALALTADLETYAG 70 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCchH-HHHHHHHHHhc--CCeEEEEEEeCCCHHH
Confidence 46788999865 89999999987654 45554 55432 23332222111 3456666788888766
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 71 ~~~~ 74 (260)
T PRK12823 71 AQAA 74 (260)
T ss_pred HHHH
Confidence 5543
No 329
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.97 E-value=1.8e+02 Score=29.99 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCeEEEEccC---ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 197 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 197 ~~HiII~G~~---~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
..+++|.|.+ ..|..++++|.+.+. .|++. .+++ +.++..++.. +.++.+...|.+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-------------~Vi~~-~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~ 67 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-------------TVIYT-YQND-RMKKSLQKLV----DEEDLLVECDVASD 67 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-------------EEEEe-cCch-HHHHHHHhhc----cCceeEEeCCCCCH
Confidence 4678889986 599999999987654 45544 5553 2333222221 12344556777777
Q ss_pred HHHHh
Q 004328 274 KSYER 278 (761)
Q Consensus 274 ~~L~r 278 (761)
++.++
T Consensus 68 ~~v~~ 72 (252)
T PRK06079 68 ESIER 72 (252)
T ss_pred HHHHH
Confidence 66554
No 330
>PRK05693 short chain dehydrogenase; Provisional
Probab=34.88 E-value=1.1e+02 Score=31.89 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=45.7
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
..++|.|.+ -.|..++++|.+.+. .|+++ +++.+.++.+... + +.++.+|.++++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~------~--~~~~~~Dl~~~~~~ 59 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-------------EVWAT-ARKAEDVEALAAA------G--FTAVQLDVNDGAAL 59 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHC------C--CeEEEeeCCCHHHH
Confidence 368899975 489999999987544 45544 5666656554321 2 34467899988877
Q ss_pred Hhcc------ccccCeEEEec
Q 004328 277 ERAA------ANKARAIIILP 291 (761)
Q Consensus 277 ~ra~------~~~A~avIIl~ 291 (761)
+++- ....+.+|-.+
T Consensus 60 ~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 60 ARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 6542 13457555444
No 331
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=34.84 E-value=74 Score=33.49 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=43.9
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
|+|.|. |..|..++++|.+.+. .|.+++ ++++..+. .+.. .+.||..++++|.+
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~-------------~V~~~~-R~~~~~~~---------~~~~--~~~~d~~d~~~l~~ 56 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASV-------------PFLVAS-RSSSSSAG---------PNEK--HVKFDWLDEDTWDN 56 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCC-------------cEEEEe-CCCccccC---------CCCc--cccccCCCHHHHHH
Confidence 567776 8899999999987654 355553 43322110 1222 34689999999987
Q ss_pred cc-----ccc-cCeEEEecC
Q 004328 279 AA-----ANK-ARAIIILPT 292 (761)
Q Consensus 279 a~-----~~~-A~avIIl~~ 292 (761)
+= +.. ++.++.+++
T Consensus 57 a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 57 PFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred HHhcccCcCCceeEEEEeCC
Confidence 63 244 787776554
No 332
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.81 E-value=1.4e+02 Score=30.58 Aligned_cols=62 Identities=10% Similarity=0.198 Sum_probs=40.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|.+.+. .++++..++++..+++.. .++.++.+|.++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~--------~~~~~~~~Dl~~~~~ 65 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA-------------KVAVLYNSAENEAKELRE--------KGVFTIKCDVGNRDQ 65 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCcHHHHHHHHh--------CCCeEEEecCCCHHH
Confidence 4568888874 589999999987654 455554444443444322 124556889999888
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 66 ~~~~ 69 (255)
T PRK06463 66 VKKS 69 (255)
T ss_pred HHHH
Confidence 7765
No 333
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.78 E-value=1.1e+02 Score=31.25 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=44.0
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|.+ .|..|.++...+.++..+.+. .. +.++.++.+|.++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~-----~~-~~~~~~~~~D~~~~~~~~~~ 70 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVE-----AL-GRRFLSLTADLSDIEAIKAL 70 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHH-----hc-CCceEEEECCCCCHHHHHHH
Confidence 4789999985 468899999964 577888887643222222221 11 23467799999999998754
No 334
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=34.64 E-value=97 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCHHHHHhhcC-CeEEEEEEECCeEEecCC---CCCcccCCCEEEEEe
Q 004328 387 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIA 431 (761)
Q Consensus 387 G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~---~d~~I~~gD~Livia 431 (761)
+.|+.|+..... +.-.+++..||++ .|. .++.++.||++-++.
T Consensus 17 ~~tv~dLL~~l~~~~~~vav~vNg~i--Vpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 17 GTTVADLLAQLGLNPEGVAVAVNGEI--VPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCcHHHHHHHhCCCCceEEEEECCEE--ccchhhhhccccCCCEEEEEE
Confidence 389999876644 4566677779984 476 788999999997764
No 335
>PRK06720 hypothetical protein; Provisional
Probab=34.51 E-value=2.1e+02 Score=27.93 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|...+. .+++. +++.+..++..++... . +.++.+...|.++.+.
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~-------------~V~l~-~r~~~~~~~~~~~l~~-~-~~~~~~~~~Dl~~~~~ 79 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGA-------------KVIVT-DIDQESGQATVEEITN-L-GGEALFVSYDMEKQGD 79 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHh-c-CCcEEEEEccCCCHHH
Confidence 56778888875 89999999987543 45544 6665555544333211 1 2234445677777766
Q ss_pred HHh
Q 004328 276 YER 278 (761)
Q Consensus 276 L~r 278 (761)
+++
T Consensus 80 v~~ 82 (169)
T PRK06720 80 WQR 82 (169)
T ss_pred HHH
Confidence 654
No 336
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=34.47 E-value=4.2e+02 Score=25.49 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCeEEEEeeccCHH--HHHHHH-hhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhh
Q 004328 498 PKERILLLGWRPDVV--EMIEEY-DNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIM 574 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~--~li~eL-~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i 574 (761)
..++|+++|-|.... .++.++ ..+...+..+.+++..+.+........+ ..++.-+..+.-.++..|++..+..
T Consensus 19 ~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~---~~~~tlvi~iSkSG~T~Et~~~~~~ 95 (158)
T cd05015 19 KITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKL---DPETTLFIVISKSGTTLETLANARL 95 (158)
T ss_pred CCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhC---CcccEEEEEEECCcCCHHHHHHHHH
Confidence 469999999887533 344444 4443346667777775443323333211 2356667788889999999986643
No 337
>PRK08177 short chain dehydrogenase; Provisional
Probab=34.29 E-value=1.2e+02 Score=30.66 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=42.7
Q ss_pred CeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 198 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 198 ~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
.+++|.|.+ ..|..++++|.+.+. .|+++ +++++..+.+.+ . .++.+..+|.++++.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~-~------~~~~~~~~D~~d~~~~ 60 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-------------QVTAT-VRGPQQDTALQA-L------PGVHIEKLDMNDPASL 60 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-------------EEEEE-eCCCcchHHHHh-c------cccceEEcCCCCHHHH
Confidence 468899964 589999999987543 56655 554444443321 1 1233456788887766
Q ss_pred Hhccc----cccCeEEEec
Q 004328 277 ERAAA----NKARAIIILP 291 (761)
Q Consensus 277 ~ra~~----~~A~avIIl~ 291 (761)
+++-- ...+.+|..+
T Consensus 61 ~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 61 DQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred HHHHHHhhcCCCCEEEEcC
Confidence 54432 2456554433
No 338
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=34.21 E-value=5.8e+02 Score=26.85 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=43.2
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
.+.|+|+|..+..+++.+...+. ...++.+.|.+++..+++.+.+ +..+ ..+.+.|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~-----------~~elv~v~d~~~~~a~~~a~~~-----~~~~------~~~~~ell- 59 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRI-----------NAELYAFYDRNLEKAENLASKT-----GAKA------CLSIDELV- 59 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCee------ECCHHHHh-
Confidence 58899999999999999875421 0145666788887777665432 2211 12344443
Q ss_pred ccccccCeEEEecC
Q 004328 279 AAANKARAIIILPT 292 (761)
Q Consensus 279 a~~~~A~avIIl~~ 292 (761)
.++|.|++.++
T Consensus 60 ---~~~DvVvi~a~ 70 (265)
T PRK13304 60 ---EDVDLVVECAS 70 (265)
T ss_pred ---cCCCEEEEcCC
Confidence 57897777654
No 339
>PRK07041 short chain dehydrogenase; Provisional
Probab=34.18 E-value=1.3e+02 Score=30.31 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=45.0
Q ss_pred EEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhc
Q 004328 201 IVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 279 (761)
Q Consensus 201 II~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra 279 (761)
+|.|.+ -.|..++++|.+.+. .|+++ .++++..+.+..... . +.++.++.+|.++++.++++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~~~ 63 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-------------RVTIA-SRSRDRLAAAARALG-G--GAPVRTAALDITDEAAVDAF 63 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHH
Confidence 355654 478999999987544 55554 676666665543321 1 23455678999999988775
Q ss_pred cc--cccCeEEEe
Q 004328 280 AA--NKARAIIIL 290 (761)
Q Consensus 280 ~~--~~A~avIIl 290 (761)
-- ...+.+|-.
T Consensus 64 ~~~~~~id~li~~ 76 (230)
T PRK07041 64 FAEAGPFDHVVIT 76 (230)
T ss_pred HHhcCCCCEEEEC
Confidence 32 234655443
No 340
>PRK04148 hypothetical protein; Provisional
Probab=33.94 E-value=90 Score=29.58 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
..+++++|.| .|..++..|.+.+. +|+.+ |.+++..+...+. +.++ +.+|-.++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-------------~ViaI-Di~~~aV~~a~~~------~~~~--v~dDlf~p 70 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-------------DVIVI-DINEKAVEKAKKL------GLNA--FVDDLFNP 70 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHh------CCeE--EECcCCCC
Confidence 4679999999 88888899987544 56544 8888877765432 3333 45776655
No 341
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=33.85 E-value=1.6e+02 Score=32.60 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred CCCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhh------hccCCCCccceEEEEEECCCCCHHhHH
Q 004328 497 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS------NAIGHGKLKNVQVFHKIGNPLNFETLK 570 (761)
Q Consensus 497 ~~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l------~~~~~~~~~~~~V~~i~GD~t~~~~L~ 570 (761)
+..+++||+|+|.- -.++||.+|. .--+|+.++-.| ++.+.. ...+...+.+.+|+.+.-|+.+ -|+
T Consensus 288 ~~a~~vLvlGGGDG--LAlRellkyP-~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr 360 (508)
T COG4262 288 RGARSVLVLGGGDG--LALRELLKYP-QVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLR 360 (508)
T ss_pred cccceEEEEcCCch--HHHHHHHhCC-CcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHH
Confidence 46799999999875 4578888773 356888888633 333332 2345677888889889988875 466
Q ss_pred hh
Q 004328 571 DT 572 (761)
Q Consensus 571 ~a 572 (761)
.+
T Consensus 361 ~a 362 (508)
T COG4262 361 TA 362 (508)
T ss_pred hh
Confidence 65
No 342
>PRK12747 short chain dehydrogenase; Provisional
Probab=33.51 E-value=1.9e+02 Score=29.57 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|++...++++..++........ +.++.+...|.++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 68 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-------------LVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHG 68 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------eEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHH
Confidence 45788999764 89999999987654 45554334444454443322111 2334445566665544
Q ss_pred H
Q 004328 276 Y 276 (761)
Q Consensus 276 L 276 (761)
.
T Consensus 69 ~ 69 (252)
T PRK12747 69 V 69 (252)
T ss_pred H
Confidence 3
No 343
>PRK06483 dihydromonapterin reductase; Provisional
Probab=33.45 E-value=1.5e+02 Score=29.96 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=36.6
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhH-HHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ-MDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~-~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++|.|.+. .|..++++|...+. .|+++ +++++. .+.+.. . + +.++.+|.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~-~-----~--~~~~~~D~~~~~ 59 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-------------PVIVS-YRTHYPAIDGLRQ-A-----G--AQCIQADFSTNA 59 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-------------eEEEE-eCCchhHHHHHHH-c-----C--CEEEEcCCCCHH
Confidence 35788999765 89999999987544 46655 444332 222211 1 2 334567887777
Q ss_pred HHHh
Q 004328 275 SYER 278 (761)
Q Consensus 275 ~L~r 278 (761)
.+++
T Consensus 60 ~~~~ 63 (236)
T PRK06483 60 GIMA 63 (236)
T ss_pred HHHH
Confidence 6654
No 344
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=33.38 E-value=1.3e+02 Score=33.70 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=46.6
Q ss_pred CeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++||+|-|..+..++..|..... ..|++.+.++ +.+..+.. ....++..+.=|..+.+.|.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~--~~~~~i~~-----~~~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSK--EKCARIAE-----LIGGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCH--HHHHHHHh-----hccccceeEEecccChHHHHHH
Confidence 589999999999999999964322 7899988743 33333321 1112567788899999999998
No 345
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.23 E-value=1.3e+02 Score=30.58 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=44.7
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|.+ .|..|+++...+. ........+. . +..++++.+|.++.+.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~~-~~~~~~~~~~--~--~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNEE-AAERVAAEIL--A--GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHHh--c--CCeEEEEECCCCCHHHHHHH
Confidence 4688999875 578899999963 5778888876432 2222221110 1 34577899999999999875
No 346
>PRK06484 short chain dehydrogenase; Validated
Probab=33.12 E-value=1.4e+02 Score=34.53 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 498 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..+.+||.|.++ .+..++++|. ..|..|.+++.. +++.+.+. ..+ +.++..+.+|.+|.+.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~---~~G~~V~~~~r~--~~~~~~~~----~~~-~~~~~~~~~D~~~~~~~~~~ 333 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFA---AAGDRLLIIDRD--AEGAKKLA----EAL-GDEHLSVQADITDEAAVESA 333 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH---HCCCEEEEEeCC--HHHHHHHH----HHh-CCceeEEEccCCCHHHHHHH
Confidence 457889999876 5888999996 367788888763 22222221 111 22456689999999988775
No 347
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=33.09 E-value=91 Score=33.25 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=45.6
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
.++|.|. |-.|..++++|.+.+. .|+++ +++++..+.+ ....+.++.||..+.+.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-------------~V~~~-~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~ 59 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-------------EVRVL-VRPTSDRRNL--------EGLDVEIVEGDLRDPASLR 59 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-------------EEEEE-EecCcccccc--------ccCCceEEEeeCCCHHHHH
Confidence 4788885 7799999999987654 45555 4433222211 1123556789999998887
Q ss_pred hccccccCeEEEecC
Q 004328 278 RAAANKARAIIILPT 292 (761)
Q Consensus 278 ra~~~~A~avIIl~~ 292 (761)
++ ++.++.||-++.
T Consensus 60 ~~-~~~~d~vi~~a~ 73 (328)
T TIGR03466 60 KA-VAGCRALFHVAA 73 (328)
T ss_pred HH-HhCCCEEEEece
Confidence 75 346776665553
No 348
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=33.05 E-value=2.1e+02 Score=29.97 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=29.7
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 535 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p 535 (761)
++-+++|+|.|..+..+++... .-|..|+++++.+
T Consensus 99 p~~~L~IfGaG~va~~la~la~---~lGf~V~v~D~R~ 133 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALA---PLPCRVTWVDSRE 133 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHh---cCCCEEEEEeCCc
Confidence 4689999999999999998885 4689999998753
No 349
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=32.90 E-value=1.4e+02 Score=32.39 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCC-CHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLT-LTKSY 276 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~-~~~~L 276 (761)
+|+|.|. |-.|..++++|...+. ..|+.+ ++..+....+.. ...+-++.||.. +.+.+
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~------------~~V~~~-~r~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTD------------WEVYGM-DMQTDRLGDLVN-------HPRMHFFEGDITINKEWI 62 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCC------------CeEEEE-eCcHHHHHHhcc-------CCCeEEEeCCCCCCHHHH
Confidence 6999997 8899999999986421 145555 454433322211 123445679997 56666
Q ss_pred HhccccccCeEEEe
Q 004328 277 ERAAANKARAIIIL 290 (761)
Q Consensus 277 ~ra~~~~A~avIIl 290 (761)
.++ ++.++.||=+
T Consensus 63 ~~~-~~~~d~ViH~ 75 (347)
T PRK11908 63 EYH-VKKCDVILPL 75 (347)
T ss_pred HHH-HcCCCEEEEC
Confidence 554 4578876634
No 350
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.84 E-value=2.7e+02 Score=26.76 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=30.8
Q ss_pred CeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 198 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 198 ~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
.+|=++|.|+.|..+++.|.+.+. ++.+ -|++++..+++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-------------~v~~-~d~~~~~~~~~~~ 42 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-------------EVTV-YDRSPEKAEALAE 42 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-------------EEEE-EESSHHHHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-------------eEEe-eccchhhhhhhHH
Confidence 467899999999999999987655 4554 4788888888764
No 351
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.67 E-value=1.9e+02 Score=29.77 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.0
Q ss_pred CCeEEEEccC---ccHHHHHHHHHhccc
Q 004328 197 SDHIIVCGVN---SHLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~~---~~~~~ll~eL~~~~~ 221 (761)
...++|.|.+ ..|..++++|.+.+.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~ 32 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGI 32 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCC
Confidence 3569999986 489999999987654
No 352
>PRK09186 flagellin modification protein A; Provisional
Probab=32.65 E-value=1e+02 Score=31.53 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=43.7
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..+++.|.+ .|..|.++...+ +...+....+. ....+..+.++.+|.+|.+.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~~-~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADIDK-EALNELLESLG-KEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecCh-HHHHHHHHHHH-hhcCCCceeEEEecCCCHHHHHHH
Confidence 4789999986 578899999963 577888876532 22222211110 111223455679999999998775
No 353
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=32.47 E-value=95 Score=25.06 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCHHHHHhhcC-CeEEEEEEECCeEEecCCC---CCcccCCCEEEEEec
Q 004328 387 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPND---DETLQPTDKILFIAP 432 (761)
Q Consensus 387 G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~---d~~I~~gD~Livia~ 432 (761)
+.|+.++...+. +.--+++..||+++ |.. ++.|++||++-++..
T Consensus 14 ~~tv~~ll~~l~~~~~~i~V~vNg~~v--~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 14 GATLAELLEELGLDPRGVAVALNGEIV--PRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCCHHHHHHHcCCCCCcEEEEECCEEc--CHHHcCceecCCCCEEEEEEe
Confidence 688999876643 23334566799843 444 388999999988765
No 354
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=32.04 E-value=36 Score=33.31 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChh
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLD 537 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~ 537 (761)
.-+++++||||+.+.-+++.|.. .|..|+|.+..|..
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~---~Ga~V~V~e~DPi~ 58 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRG---LGARVTVTEIDPIR 58 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHH---TT-EEEEE-SSHHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhh---CCCEEEEEECChHH
Confidence 35889999999999999999964 57889888875543
No 355
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=31.89 E-value=1.1e+02 Score=38.70 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=44.1
Q ss_pred CCCCCeEEEEeeccCHHHHHHHHhhhcC-----------CCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCC
Q 004328 496 LGPKERILLLGWRPDVVEMIEEYDNYLG-----------PGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPL 564 (761)
Q Consensus 496 ~~~~~~iLI~Gw~~~~~~li~eL~~~~~-----------~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t 564 (761)
..+.++|+|+|-|+.+...++.|.+... ++..|+|.+. ..++.+.+. ..++++ ..+.-|.+
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la----~~~~~~--~~v~lDv~ 637 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETV----EGIENA--EAVQLDVS 637 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHH----HhcCCC--ceEEeecC
Confidence 3457899999999999999999964311 1223555544 223333331 223343 44788899
Q ss_pred CHHhHHhh
Q 004328 565 NFETLKDT 572 (761)
Q Consensus 565 ~~~~L~~a 572 (761)
|.+.|.++
T Consensus 638 D~e~L~~~ 645 (1042)
T PLN02819 638 DSESLLKY 645 (1042)
T ss_pred CHHHHHHh
Confidence 99999875
No 356
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.53 E-value=6.3e+02 Score=26.52 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=65.1
Q ss_pred HHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhccccccC-eEE
Q 004328 210 SFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKAR-AII 288 (761)
Q Consensus 210 ~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra~~~~A~-avI 288 (761)
..+++++.+.+. +-+++.|.+.++.+++.+.... ++.+.+...-..++.+.++...- .++ .|.
T Consensus 105 e~f~~~~~~aGv-------------dgviipDlp~ee~~~~~~~~~~--~gl~~i~lv~P~T~~eri~~i~~-~~~gfiy 168 (256)
T TIGR00262 105 EEFYAKCKEVGV-------------DGVLVADLPLEESGDLVEAAKK--HGVKPIFLVAPNADDERLKQIAE-KSQGFVY 168 (256)
T ss_pred HHHHHHHHHcCC-------------CEEEECCCChHHHHHHHHHHHH--CCCcEEEEECCCCCHHHHHHHHH-hCCCCEE
Confidence 567788877654 3566668777777766543311 26665544433344555544433 455 455
Q ss_pred EecCCC---CCccchHHHHHHHHhcCCCCCCCCCCEEE--EEeCcCcHHHHhhcCCCeEEEchhhH
Q 004328 289 ILPTKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVENVA 349 (761)
Q Consensus 289 Il~~~~---d~~e~D~~~l~~vLal~~~~~~~~~~iIa--~v~d~~~~~~l~~~g~d~Vi~~~~~~ 349 (761)
+.+..+ .+.+-+......+=.+|+. .+.|+++ -++++++...+..+|+|-|+.-..+.
T Consensus 169 ~vs~~G~TG~~~~~~~~~~~~i~~lr~~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 169 LVSRAGVTGARNRAASALNELVKRLKAY---SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred EEECCCCCCCcccCChhHHHHHHHHHhh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 444322 1101111122112222332 2457876 56778888889999999777655443
No 357
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=31.45 E-value=1.1e+02 Score=34.30 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=33.2
Q ss_pred HHHHHhhhheeeccCCCChhHHHHHhhheeeecccccccC-------CcchhhHHHHHHHHHHHHHHHH
Q 004328 110 FVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQR-------TRVERVIGFILAIWGILFYSRL 171 (761)
Q Consensus 110 iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~g~~d~-------t~~~rl~~~~l~l~Gi~~fa~l 171 (761)
+.+++.+.|+..+ . .+++||++.++..++++|+..-+. .+...++..++++.|-.-|..+
T Consensus 113 lt~l~~~~~~~~g-~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~ 179 (390)
T TIGR00933 113 GTILLAVRFVLTG-W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVH 179 (390)
T ss_pred HHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHH
Confidence 3334444444332 2 789999999999888877643332 1224444545444444334433
No 358
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.28 E-value=2.3e+02 Score=29.12 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-||+|+|.|-.|..+++.|...+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv 45 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV 45 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999988655
No 359
>COG4292 Predicted membrane protein [Function unknown]
Probab=31.25 E-value=36 Score=37.19 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=35.4
Q ss_pred hhHHHHHhhheeeecccccccCCcchhhHHHHHHHHHHHHH
Q 004328 128 LEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFY 168 (761)
Q Consensus 128 ~~da~w~~~~~~t~~g~g~~d~t~~~rl~~~~l~l~Gi~~f 168 (761)
+.-++||+|..-|.-+.-+|+....-|++.++.|++|+++-
T Consensus 57 l~lalWW~Wi~tT~ftnr~g~e~~~~rl~l~~~Mf~~vlLa 97 (387)
T COG4292 57 LILALWWAWIHTTWFTNRLGTEIEPVRLLLLVLMFFGVLLA 97 (387)
T ss_pred HHHHHHHHHHhhHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 56789999998777777889889999999999999999663
No 360
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=31.24 E-value=1.1e+02 Score=31.47 Aligned_cols=65 Identities=5% Similarity=-0.005 Sum_probs=44.2
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.+||.|.+. .+..+++.|. ..|..|++++..+.++..+.+. . .+.++.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~---~~G~~vv~~~~~~~~~~~~~~~-----~-~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLA---KAGADIVGVGVAEAPETQAQVE-----A-LGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHH---HCCCEEEEecCchHHHHHHHHH-----H-cCCeEEEEEeCCCCHHHHHHH
Confidence 47889999875 5888999996 4688888876532222222221 1 134577899999999998876
No 361
>PLN02427 UDP-apiose/xylose synthase
Probab=31.21 E-value=1.4e+02 Score=33.14 Aligned_cols=70 Identities=10% Similarity=-0.103 Sum_probs=44.0
Q ss_pred CCCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 498 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++.+|+|.|. |-.+..+++.|.+. .|.+|..++..+ ++...+........ ..++.++.||.+|.+.++++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~ 83 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGL 83 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhccccccC-CCCeEEEEcCCCChHHHHHH
Confidence 3467999997 66899999999642 256788777532 22111110000001 12477799999999998876
No 362
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.17 E-value=1.6e+02 Score=30.64 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCeEEEEcc---CccHHHHHHHHHhccc
Q 004328 197 SDHIIVCGV---NSHLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~---~~~~~~ll~eL~~~~~ 221 (761)
..+++|.|. +-.|..++++|.+.+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~ 33 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGA 33 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCC
Confidence 468999995 3589999999987654
No 363
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.07 E-value=1.3e+02 Score=30.33 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=43.9
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..+++.|.+ .|..|.++...+.+........+ .-.+.++.++.+|.++.+.+.++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~---~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAA---QGANVVINYASSEAGAEALVAEI---GALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCchhHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 3678999976 468889999864 57788777664432111111111 01234577899999999988875
No 364
>PRK06914 short chain dehydrogenase; Provisional
Probab=30.81 E-value=1.1e+02 Score=31.84 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=42.8
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 571 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~ 571 (761)
+++||.|.+ ..+..+++.|. ..|..|+++...+. +............. +.++.++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~---~~G~~V~~~~r~~~-~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~ 71 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELA---KKGYLVIATMRNPE-KQENLLSQATQLNL-QQNIKVQQLDVTDQNSIHN 71 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH---hCCCEEEEEeCCHH-HHHHHHHHHHhcCC-CCceeEEecCCCCHHHHHH
Confidence 578999975 56889999996 35788888875332 22111111100011 2457789999999998876
No 365
>PRK10750 potassium transporter; Provisional
Probab=30.77 E-value=32 Score=39.78 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhheeeccCCCChhHHH----HHhhheeeeccccccc---CCcchhhHHHHHHHHHHHHHH
Q 004328 101 VVLAVVCFSFVVFGGFLFFKFRDETQSLEDCL----WEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYS 169 (761)
Q Consensus 101 ~~ll~~~~~iv~~g~~~~~~~e~~~~s~~da~----w~~~~~~t~~g~g~~d---~t~~~rl~~~~l~l~Gi~~fa 169 (761)
++.+.+.+++++++++.++..+. ..++.+++ +++...+|++|+.-.| -++..+++.+++++.|=..-|
T Consensus 275 r~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GS 349 (483)
T PRK10750 275 RMFIGVQLTLVVICTLVLWFHNV-YSSALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGS 349 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCccc
Confidence 44444444555555554443331 12444554 4443333444443334 234567777777777665544
No 366
>PRK10750 potassium transporter; Provisional
Probab=30.72 E-value=1.5e+02 Score=34.31 Aligned_cols=33 Identities=6% Similarity=0.024 Sum_probs=23.6
Q ss_pred HHHHHHhhhheeeccCCCChhHHHHHhhheeeeccc
Q 004328 109 SFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSST 144 (761)
Q Consensus 109 ~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~ 144 (761)
.+.+++.++|+.. +.+++||++.++.++.+.|+
T Consensus 191 ~lT~~~~~ll~~~---Gm~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 191 LLTVACALALWFA---GMDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred HHHHHHHHHHHHc---CCcHHHHHHHHHHHHhccCc
Confidence 3444454455444 58999999999999877776
No 367
>PRK09414 glutamate dehydrogenase; Provisional
Probab=30.69 E-value=1.8e+02 Score=33.43 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=27.4
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeC
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD 241 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d 241 (761)
..-+++|.|+|+++..+++.|...+. .||.++|
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~Ga-------------kVVavsD 263 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGA-------------KVVTCSD 263 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEEc
Confidence 46799999999999999999976543 5777778
No 368
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.64 E-value=1.1e+02 Score=31.65 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPL 564 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t 564 (761)
...++||+|+|+.+..=++.|.+ .|..|+|++....++..... ..-.+.++..+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~--------~~~~i~~~~r~~~ 79 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLK--------KYGNLKLIKGNYD 79 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHH--------hCCCEEEEeCCCC
Confidence 46799999999998877777754 57789999986544443322 1223556776553
No 369
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=30.60 E-value=1.4e+02 Score=23.97 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCCHHHHHhhcC-CeEEEEEEECCeEEecC---CCCCcccCCCEEEEEec
Q 004328 387 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP---NDDETLQPTDKILFIAP 432 (761)
Q Consensus 387 G~t~~e~~~~~~-~~iviGI~r~G~~~lnP---~~d~~I~~gD~Livia~ 432 (761)
+.|+.|+...+. ..-.+++..||+++ | ..++.|+.||++-++-.
T Consensus 13 ~~tv~~ll~~l~~~~~~v~v~vN~~iv--~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 13 GLTLAALLESLGLDPRRVAVAVNGEIV--PRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCcHHHHHHHcCCCCCeEEEEECCEEc--CHHHcCceecCCCCEEEEEEe
Confidence 678999876643 33455677799853 4 34578999999987754
No 370
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=30.54 E-value=67 Score=33.85 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=39.6
Q ss_pred eEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 501 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 501 ~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+|+|.|. |..+..++++|.+ .|.+|..+...+. +. ...+ +..+.||.+|.++|+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~--~~---------~~~~--~~~~~~d~~d~~~l~~a 57 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSS--SS---------AGPN--EKHVKFDWLDEDTWDNP 57 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCc--cc---------cCCC--CccccccCCCHHHHHHH
Confidence 3788888 7889999999964 5777888876432 11 1123 34478999999999886
No 371
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.41 E-value=1.4e+02 Score=31.99 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..-++|-|.+. .|..++.||.+.+. ..|++. +..++++.+.++........++.++++|-+++++
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~-------------~l~lva-r~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~ 77 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA-------------KLVLVA-RRARRLERVAEELRKLGSLEKVLVLQLDVSDEES 77 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------------ceEEee-hhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHH
Confidence 44567788876 78999999988654 333332 3333334332221111111168889999999999
Q ss_pred HHhc------cccccCe
Q 004328 276 YERA------AANKARA 286 (761)
Q Consensus 276 L~ra------~~~~A~a 286 (761)
-+++ ...+.|.
T Consensus 78 ~~~~~~~~~~~fg~vDv 94 (282)
T KOG1205|consen 78 VKKFVEWAIRHFGRVDV 94 (282)
T ss_pred HHHHHHHHHHhcCCCCE
Confidence 8866 5666773
No 372
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=30.41 E-value=2e+02 Score=29.97 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKL 250 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l 250 (761)
||+|+|.|-.|..+++.|...+. ..++|+ |.|.-+...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv------------g~i~iv-D~D~Ve~sNL 39 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF------------GQIHVI-DMDTIDVSNL 39 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------------CeEEEE-eCCEEcchhh
Confidence 58999999999999999988654 257766 6555444444
No 373
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=30.38 E-value=42 Score=40.79 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=46.3
Q ss_pred HHHHHHHhhhheeeccCCCChhHHHHHhhheeeeccc---ccccCCcchhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004328 108 FSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSST---HLKQRTRVERVI-GFILAIWGILFYSRLLSTM-TEQFRNN 182 (761)
Q Consensus 108 ~~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~---g~~d~t~~~rl~-~~~l~l~Gi~~fa~li~~i-~~~l~~~ 182 (761)
+.+.++|++++|.-..++..+.||++.+.-..|-+|- +..+.+....++ .++.+++|-++....+.++ --|++++
T Consensus 54 i~~~~i~si~ly~~~~~~~~yiDalF~a~~a~tq~GLntVd~n~l~~~qq~~l~~~~~~~~pI~i~~~~~f~RlywFek~ 133 (800)
T TIGR00934 54 ISLTIIASILLYPSTVKNPAYIDALFLAAGALTQGGLNTVDMNDLSLYQQIVLYILMLLTTPIFVHSCLAFVRLYWFERY 133 (800)
T ss_pred HHHHHHHHHhccccCCCChhHHHHHHHHhhhhhhcCCceeeHHhcchhHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHH
Confidence 3456888888887444678999999977666554443 233334444444 4444455555554444433 4566666
Q ss_pred HHHH
Q 004328 183 MQKL 186 (761)
Q Consensus 183 ~~~l 186 (761)
++.+
T Consensus 134 F~~i 137 (800)
T TIGR00934 134 FDGI 137 (800)
T ss_pred hhHH
Confidence 5543
No 374
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=30.34 E-value=1.9e+02 Score=29.00 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=48.0
Q ss_pred EEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 200 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 200 iII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
|+|+|. |-.|..++++|.+.+. .++.+...++....... ..++.+..+|..+.+.+++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~--------~~~~~~~~~dl~~~~~~~~ 59 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------------EVIVLSRSSNSESFEEK--------KLNVEFVIGDLTDKEQLEK 59 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------------EEEEEESCSTGGHHHHH--------HTTEEEEESETTSHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------------ccccccccccccccccc--------cceEEEEEeeccccccccc
Confidence 688885 5589999999998765 45555554443322211 1145667899999988876
Q ss_pred cccc-ccCeEEEecCC
Q 004328 279 AAAN-KARAIIILPTK 293 (761)
Q Consensus 279 a~~~-~A~avIIl~~~ 293 (761)
+--. ..+.|+-++..
T Consensus 60 ~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 60 LLEKANIDVVIHLAAF 75 (236)
T ss_dssp HHHHHTESEEEEEBSS
T ss_pred cccccCceEEEEeecc
Confidence 6433 36888777754
No 375
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.32 E-value=1.2e+02 Score=30.92 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=42.7
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|.+. .+..+++.|.+ .|..|.++...+.+...+....+ +-.+.++.++.+|.++++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 70 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAA---AGFDLAINDRPDDEELAATQQEL---RALGVEVIFFPADVADLSAHEAM 70 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCEEEEEecCchhHHHHHHHHH---HhcCCceEEEEecCCCHHHHHHH
Confidence 5688888764 68889999964 57788888754332222211111 01123567799999999988765
No 376
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=30.26 E-value=51 Score=36.41 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhheeeccCCCChhHHHHHhhheeeeccccccc----CCcc---hhhHHHHHHHHHH-HHHHHH
Q 004328 104 AVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----RTRV---ERVIGFILAIWGI-LFYSRL 171 (761)
Q Consensus 104 l~~~~~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~g~~d----~t~~---~rl~~~~l~l~Gi-~~fa~l 171 (761)
+++.+++++++++.+...+ .+.++.|+++.+...+.+.|.+.|. -+.. ++++.+++|+.|= -+++++
T Consensus 272 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~l 346 (354)
T PF02386_consen 272 FFLYFIIVFISTLLLSLDG-LDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPVL 346 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHS-S-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHHH
Confidence 3333445555555554443 2222799999988888777664443 2334 8888888777663 444443
No 377
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=30.26 E-value=3.8e+02 Score=28.76 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=37.9
Q ss_pred EccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHH
Q 004328 203 CGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 276 (761)
Q Consensus 203 ~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L 276 (761)
||.|..+..+++.+.. .. .++-+ |.+++.++...++......+.+|..+.||..+...+
T Consensus 72 cGtG~~t~~Ll~~l~~-~~-------------~~~~i-DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQ-PA-------------RYVPI-DISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred CCcchhHHHHHHhhcc-CC-------------eEEEE-ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 6677788888887743 11 35544 888877776655543333467787788998875433
No 378
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.23 E-value=1.3e+02 Score=31.07 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=44.1
Q ss_pred CCeEEEEeec---cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~---~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|-|.+ ..+..++++|. +.|..|.+.... ++..+.+.+ +....++++..|.++.+..+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la---~~G~~Vi~~~r~--~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIK---DQGATVIYTYQN--DRMKKSLQK-----LVDEEDLLVECDVASDESIERA 73 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHH---HCCCEEEEecCc--hHHHHHHHh-----hccCceeEEeCCCCCHHHHHHH
Confidence 4789999986 68999999996 468888877642 222222221 1122467789999999988875
No 379
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=30.16 E-value=1.1e+02 Score=32.26 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=40.5
Q ss_pred eEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 501 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 501 ~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+|+|.|. |-.+..++++|.+.. +...|+.++..+...+.+.+... ..+..+.++.||.++.+.+.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLDKLTYAGNLENLADL----EDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEecCCCcchhhhhhhhh----ccCCCcEEEEcCCcCHHHHHHH
Confidence 4788988 578999999996432 23567776532111111111100 1112456689999999999876
No 380
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=29.82 E-value=1.3e+02 Score=35.05 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=32.1
Q ss_pred CCChhHHHHHhhheeeeccccccc------C-CcchhhHHHHHHHHHHHHHHHHHHHH
Q 004328 125 TQSLEDCLWEAWACLISSSTHLKQ------R-TRVERVIGFILAIWGILFYSRLLSTM 175 (761)
Q Consensus 125 ~~s~~da~w~~~~~~t~~g~g~~d------~-t~~~rl~~~~l~l~Gi~~fa~li~~i 175 (761)
+.+++||++-++.++++.|+.-.+ . .+.-.+++.++++.|=.-|+...-.+
T Consensus 196 gm~~~dAi~hs~Sa~~ngGFS~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~~~ 253 (499)
T COG0168 196 GMPLFDAIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHYRLL 253 (499)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCcchhhhcccChhHHHHHHHHHHHhcCChHHHHHHH
Confidence 579999999999999887774433 2 33444555555555555555544333
No 381
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=29.74 E-value=2.1e+02 Score=29.13 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 196 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 196 ~~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
....++|.|.+. .|..++++|.+.+. .|+++ +++.+..+++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~ 54 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-------------TVILL-GRTEEKLEAVYD 54 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------------cEEEE-eCCHHHHHHHHH
Confidence 456788888654 89999999987543 46555 666655555443
No 382
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.74 E-value=1.3e+02 Score=30.75 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=44.4
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|.+ .|..|.++...+ +...+....+ . .+.++.++.+|.+|.+.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRDA-EAAERVAAAI---A-AGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCCH-HHHHHHHHHH---h-cCCeEEEEEcCCCCHHHHHHH
Confidence 4688999986 468899999964 577888887532 2222222111 1 234577899999999999875
No 383
>PRK06101 short chain dehydrogenase; Provisional
Probab=29.70 E-value=1e+02 Score=31.52 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=42.5
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|.+. .+..++++|.+ .|..|.+++.. +++.+.+. ... .++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~----~~~--~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELH----TQS--ANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHH----Hhc--CCCeEEEeeCCCHHHHHHH
Confidence 4688898765 68899999963 68888888763 23322221 111 2356789999999999886
No 384
>PRK08265 short chain dehydrogenase; Provisional
Probab=29.59 E-value=1.1e+02 Score=31.75 Aligned_cols=64 Identities=8% Similarity=0.016 Sum_probs=43.6
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..+++.|.+ .|..|.+++..+ ++..+... .+ +.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~-~~~~~~~~-----~~-~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDIDA-DNGAAVAA-----SL-GERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHH-----Hh-CCeeEEEEecCCCHHHHHHH
Confidence 4688999874 578899999964 577888887532 22222211 11 23577799999999988775
No 385
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.53 E-value=1.3e+02 Score=30.95 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+++||.|.+ ..+..+++.|.+ .|..|.+++..+ ++..+....+. . .+.++.++.+|.++++.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~~-~~~~~~~~~i~--~-~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRDP-AKLAAAAESLK--G-QGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHHH--h-cCceEEEEEccCCCHHHHHHH
Confidence 4789999985 578899999953 578888876532 22222221110 1 134577899999999998876
No 386
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=29.12 E-value=2.7e+02 Score=29.16 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=47.4
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
-+.|++|+|.|..+..+++....-+. +|+|+.++++ ... . ..+.+.+.+ ...++ .+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf-------------~V~v~D~R~~-~~~---~---~~~~~~~~~-~~~~~--~~~ 155 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPC-------------RVTWVDSREA-EFP---E---DLPDGVATL-VTDEP--EAE 155 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCC-------------EEEEEeCCcc-ccc---c---cCCCCceEE-ecCCH--HHH
Confidence 36899999999999999988876443 5777744432 111 0 111123221 22332 333
Q ss_pred HHhccccccCeEEEecCCCCCccchHHHHHHHH
Q 004328 276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVL 308 (761)
Q Consensus 276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vL 308 (761)
+.. +..-++++|++.+. +-|...+..+|
T Consensus 156 ~~~--~~~~t~vvi~th~h---~~D~~~L~~aL 183 (246)
T TIGR02964 156 VAE--APPGSYFLVLTHDH---ALDLELCHAAL 183 (246)
T ss_pred Hhc--CCCCcEEEEEeCCh---HHHHHHHHHHH
Confidence 333 34445566665433 34777777766
No 387
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=29.04 E-value=82 Score=36.68 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhheeeccCCCChhHHHHHhhheeeecccccccC---Ccch------hhHHHHHHHHHH-HHHHHHHH
Q 004328 104 AVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQR---TRVE------RVIGFILAIWGI-LFYSRLLS 173 (761)
Q Consensus 104 l~~~~~iv~~g~~~~~~~e~~~~s~~da~w~~~~~~t~~g~g~~d~---t~~~------rl~~~~l~l~Gi-~~fa~li~ 173 (761)
+++-+++++++.+.....+ .+ ++.++++.+...+.+.|.+.|.. +..+ +++.+++|+.|= .+++.++.
T Consensus 403 ~~l~~~~~~i~~~~l~~~~-~~-~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~ 480 (499)
T COG0168 403 FFLYLLILIIGALILILTG-YD-PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVL 480 (499)
T ss_pred HHHHHHHHHHHHHHHHHhc-Cc-cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHh
Confidence 3333455555555554554 23 89999999988887777655432 2334 887777776664 56665554
Q ss_pred H
Q 004328 174 T 174 (761)
Q Consensus 174 ~ 174 (761)
+
T Consensus 481 ~ 481 (499)
T COG0168 481 F 481 (499)
T ss_pred h
Confidence 3
No 388
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=29.01 E-value=7e+02 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=20.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYH 220 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~ 220 (761)
+.+++|+|.|+.+..++++|....
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~ 166 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEP 166 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCc
Confidence 467999999999999999997643
No 389
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=28.88 E-value=2.5e+02 Score=34.12 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=44.4
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+ -.|..++++|...+. .|+++ +++.+..+.+.+..........+..+.+|.++++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-------------~Vvi~-~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~ 479 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-------------HVVLA-DLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQA 479 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHH
Confidence 5678888975 489999999987544 45554 66666555544332111111245567889888887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 480 v~~a 483 (676)
T TIGR02632 480 VKAA 483 (676)
T ss_pred HHHH
Confidence 7654
No 390
>PRK07831 short chain dehydrogenase; Provisional
Probab=28.79 E-value=1.3e+02 Score=31.01 Aligned_cols=69 Identities=7% Similarity=-0.080 Sum_probs=43.8
Q ss_pred CCeEEEEeec--cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR--PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~--~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.. ..+..+++.|.+ .|..|.+.+..+. ...+....+ ...+.+.++.++.+|.++.+.++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALE---EGARVVISDIHER-RLGETADEL-AAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHH-HHhcCCceEEEEEccCCCHHHHHHH
Confidence 4789999983 589999999963 5777777765321 111111111 0112234577799999999888765
No 391
>PRK08017 oxidoreductase; Provisional
Probab=28.69 E-value=71 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=41.4
Q ss_pred CeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|. |..+..+++.|.+ .|..|.++...+ ++.+.+. ...++++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~--------~~~~~~~~~D~~~~~~~~~~ 63 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRKP--DDVARMN--------SLGFTGILLDLDDPESVERA 63 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHhHHHH--------hCCCeEEEeecCCHHHHHHH
Confidence 57999999 7789999999963 467787776532 3322221 11256688999999887764
No 392
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=28.68 E-value=1.3e+02 Score=32.01 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
+|.|+|.|..|..++..|...+. .|.+. |.+++.++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-------------~V~~~-d~~~~~~~~a~ 40 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-------------TVYGV-SRRESTCERAI 40 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHH
Confidence 58899999999999999987644 45544 77777776654
No 393
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=28.68 E-value=1.3e+02 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHhhcC-CeEEEEEEE-------CCeE-EecCCCCCcccCCCEEEEE
Q 004328 382 FPNLAGIKYRQLRRGFQ-EAVVCGLYR-------NGKI-YFHPNDDETLQPTDKILFI 430 (761)
Q Consensus 382 ~~~l~G~t~~e~~~~~~-~~iviGI~r-------~G~~-~lnP~~d~~I~~gD~Livi 430 (761)
.|++.|+++.|+...+. ...-+...+ .|.+ .-+|.+.+.+..|+.+.+.
T Consensus 3 vPd~~g~~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v~~~~~I~l~ 60 (63)
T PF03793_consen 3 VPDLVGMTYDEAKSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKVKKGSKITLT 60 (63)
T ss_dssp E-TTTTSBHHHHHHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEEETTSEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCcCCCCEEEEE
Confidence 48899999999877654 122233322 3553 3689999999999988764
No 394
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.51 E-value=1.8e+02 Score=30.16 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCeEEEEcc---CccHHHHHHHHHhcccccccccccccCcceEEEEe--CCChhHHHHHHHhhcccCCCceEEEEeCCCC
Q 004328 197 SDHIIVCGV---NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLS--DLPRKQMDKLAENIAKDLNHIDILSKSCSLT 271 (761)
Q Consensus 197 ~~HiII~G~---~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~--d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~ 271 (761)
..+++|.|. +..|..++++|.+.+. .+++.. +++++.++++.+++ +. ..+...|.+
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Dv~ 66 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-------------ELAFTYVGDRFKDRITEFAAEF-----GS-DLVFPCDVA 66 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-------------eEEEEccchHHHHHHHHHHHhc-----CC-cceeeccCC
Confidence 467899995 3579999999987654 455442 22344444443322 11 123456777
Q ss_pred CHHHHHhc
Q 004328 272 LTKSYERA 279 (761)
Q Consensus 272 ~~~~L~ra 279 (761)
+++.++++
T Consensus 67 d~~~v~~~ 74 (260)
T PRK06997 67 SDEQIDAL 74 (260)
T ss_pred CHHHHHHH
Confidence 77666543
No 395
>PRK08703 short chain dehydrogenase; Provisional
Probab=28.43 E-value=2e+02 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.3
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
..+++|.|.+ -.|..++++|.+.+. .|+++ +++++..+++.+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~ 48 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-------------TVILV-ARHQKKLEKVYD 48 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------------EEEEE-eCChHHHHHHHH
Confidence 4688999975 489999999987543 45555 666665555443
No 396
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=28.35 E-value=1.6e+02 Score=23.73 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCHHHHHhhcC-CeEEEEEEECCeEEecCC---CCCcccCCCEEEEEec
Q 004328 387 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIAP 432 (761)
Q Consensus 387 G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~---~d~~I~~gD~Livia~ 432 (761)
+.|+.++...+. +.-.+++..|+++ .|+ +++.|++||++-++..
T Consensus 14 ~~tl~~Ll~~l~~~~~~vavavN~~i--v~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 14 ATTLALLLAELDYEGNWLATAVNGEL--VHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred cCcHHHHHHHcCCCCCeEEEEECCEE--cCHHHcCccccCCCCEEEEEEe
Confidence 458888776543 2334556668984 355 4789999999988754
No 397
>PRK06841 short chain dehydrogenase; Provisional
Probab=28.32 E-value=2.5e+02 Score=28.62 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
..+++|.|. +..|..++++|.+.+. .|+++ +++++. .+..... .+.++.++.+|.++++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~-------------~Vi~~-~r~~~~-~~~~~~~----~~~~~~~~~~Dl~~~~~ 75 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA-------------RVALL-DRSEDV-AEVAAQL----LGGNAKGLVCDVSDSQS 75 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHH-HHHHHHh----hCCceEEEEecCCCHHH
Confidence 467889996 5689999999987544 45544 555432 2222221 12345567889998887
Q ss_pred HHhccc------cccCeEEEec
Q 004328 276 YERAAA------NKARAIIILP 291 (761)
Q Consensus 276 L~ra~~------~~A~avIIl~ 291 (761)
++++-- ...+.+|-.+
T Consensus 76 ~~~~~~~~~~~~~~~d~vi~~a 97 (255)
T PRK06841 76 VEAAVAAVISAFGRIDILVNSA 97 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 766521 2456555444
No 398
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.31 E-value=81 Score=33.13 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=42.1
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|. |..+..++++|.+ .|..|.+++..+ +..+.+. +..+.++.+|.+|.+.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~~--~~~~~l~--------~~~~~~~~~Dl~d~~~~~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS---DGWRVFATCRKE--EDVAALE--------AEGLEAFQLDYAEPESIAAL 65 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHH--------HCCceEEEccCCCHHHHHHH
Confidence 367999998 4578899999963 578888887632 2222221 11356689999999888765
No 399
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=28.24 E-value=2.1e+02 Score=29.31 Aligned_cols=65 Identities=8% Similarity=0.012 Sum_probs=44.1
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|... .+..++++|.+ .|..|.+++....++..+.+. .. +.++.++..|.+|.+.++++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~-----~~-~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVT-----AL-GRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHH-----hc-CCeEEEEECCCCCHHHHHHH
Confidence 46889999875 68899999964 577887775433333222221 11 33567899999999888875
No 400
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.24 E-value=2.4e+02 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCeEEEEccCc---cHHHHHHHHHhccc
Q 004328 197 SDHIIVCGVNS---HLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~~~---~~~~ll~eL~~~~~ 221 (761)
...++|.|.+. .|..++++|.+.+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~ 33 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA 33 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC
Confidence 45788999874 88999999987654
No 401
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=28.20 E-value=2.3e+02 Score=30.50 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=46.1
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCC--ChhH-HHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQ-MDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~--~~~~-~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
.++|.|. |-.|..++++|.+.+. .|+++... .... .+.+. .. .+.++.++.||.++.+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-------------~V~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~Dl~d~~ 63 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-------------DVVILDNLCNSKRSVLPVIE-RL----GGKHPTFVEGDIRNEA 63 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-------------eEEEEecCCCchHhHHHHHH-Hh----cCCCceEEEccCCCHH
Confidence 3788884 7799999999987654 46655321 1111 11111 11 1233555689999998
Q ss_pred HHHhccc-cccCeEEEecC
Q 004328 275 SYERAAA-NKARAIIILPT 292 (761)
Q Consensus 275 ~L~ra~~-~~A~avIIl~~ 292 (761)
.+.++-. ..++.||-++.
T Consensus 64 ~~~~~~~~~~~d~vvh~a~ 82 (338)
T PRK10675 64 LLTEILHDHAIDTVIHFAG 82 (338)
T ss_pred HHHHHHhcCCCCEEEECCc
Confidence 8776532 25787766654
No 402
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=28.01 E-value=44 Score=40.65 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhhheeecc-----CCC----ChhHHHHHhhheeeeccc---ccccCCcchhhHHHHHHHHHHHH
Q 004328 102 VLAVVCFSFVVFGGFLFFKFRD-----ETQ----SLEDCLWEAWACLISSST---HLKQRTRVERVIGFILAIWGILF 167 (761)
Q Consensus 102 ~ll~~~~~iv~~g~~~~~~~e~-----~~~----s~~da~w~~~~~~t~~g~---g~~d~t~~~rl~~~~l~l~Gi~~ 167 (761)
++++++++++++|.++|+.+|- .+. -+.+|++++..+ -++|+ ..+..+++..++.+++|..|..-
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 4555666778888777777661 122 366777766432 23333 23346678888888888888755
No 403
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=27.94 E-value=1.6e+02 Score=29.91 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=43.5
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|.. .|..|++......+..++....+. -.+.++.++..|.++.+.+.++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~ 74 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQ---EGAKVVINYNSSKEAAENLVNELG---KEGHDVYAVQADVSKVEDANRL 74 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEcCCcHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHH
Confidence 47899999765 57889999963 467777654432222222221110 1124578899999999998876
No 404
>PRK12828 short chain dehydrogenase; Provisional
Probab=27.94 E-value=1.2e+02 Score=30.40 Aligned_cols=65 Identities=3% Similarity=-0.122 Sum_probs=41.8
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|. |..+..+++.|.+ .|..|.+++..+... .+... .+....+..+.+|.+|.+.++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~~~~-~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~ 72 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGAAPL-SQTLP-----GVPADALRIGGIDLVDPQAARRA 72 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCChHhH-HHHHH-----HHhhcCceEEEeecCCHHHHHHH
Confidence 467899887 4578899999953 577888887633221 11111 11122345578999999988775
No 405
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.89 E-value=1.3e+02 Score=31.19 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=44.0
Q ss_pred CCeEEEEeec---cCHHHHHHHHhhhcCCCCEEEEEeCCC-hhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVP-LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~---~~~~~li~eL~~~~~~gs~v~ii~~~p-~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..++++|. +.|..|.+..... .+++-+.+. ..+++.++.++..|.+|++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la---~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLH---NAGAKLVFTYAGERLEKEVRELA----DTLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH---HCCCEEEEecCcccchHHHHHHH----HHcCCCceEEEecCCCCHHHHHHH
Confidence 4789999984 78999999996 4677888775321 112111111 122234567789999999988765
No 406
>PRK06953 short chain dehydrogenase; Provisional
Probab=27.84 E-value=1.9e+02 Score=28.99 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=39.0
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 277 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ 277 (761)
-++|.|. +..|..++++|.+.+. .++++ +++++..+++.. ..+.++.+|.++.+.++
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~-------------~v~~~-~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~ 60 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGW-------------RVIAT-ARDAAALAALQA--------LGAEALALDVADPASVA 60 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCC-------------EEEEE-ECCHHHHHHHHh--------ccceEEEecCCCHHHHH
Confidence 4778885 4589999999986543 45555 566655555432 12335678888888887
Q ss_pred hc
Q 004328 278 RA 279 (761)
Q Consensus 278 ra 279 (761)
++
T Consensus 61 ~~ 62 (222)
T PRK06953 61 GL 62 (222)
T ss_pred HH
Confidence 74
No 407
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.80 E-value=1e+02 Score=25.70 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.2
Q ss_pred eEEEEccCccHHHHHHHHHhccc
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
+++|+|.|..+..++..|...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~ 23 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK 23 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc
Confidence 68999999999999999987544
No 408
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=27.78 E-value=3e+02 Score=30.60 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhc
Q 004328 498 PKERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 576 (761)
Q Consensus 498 ~~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~ 576 (761)
+..+++|.|++ --+..++++|.+.. +..+|-+++..|........ ........+.++.||-.+...+..+--.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~D~~~~~~~~~~e----~~~~~~~~v~~~~~D~~~~~~i~~a~~~- 76 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVVDKTPTQSNLPAE----LTGFRSGRVTVILGDLLDANSISNAFQG- 76 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEeccCccccccchh----hhcccCCceeEEecchhhhhhhhhhccC-
Confidence 46889999965 57999999997654 36788888876541110000 0111355678899999999988876221
Q ss_pred cccccCCCCCCcEEEEEe-cC--CccCCCcchhhHHHHHHHHHHHHHHhHhCCC
Q 004328 577 QNSFKDGEELPLSIVVIS-DR--EWLLGDPSRADKQSAYSLLLAENICNKLGVK 627 (761)
Q Consensus 577 ~~a~~~d~~~~~siviLs-d~--~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 627 (761)
+ .++.++ -. +....+.+..+.-|+-....+-.-|.+.|++
T Consensus 77 --~---------~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 77 --A---------VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred --c---------eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 0 244443 11 1112246677777887777777778888764
No 409
>PRK03612 spermidine synthase; Provisional
Probab=27.74 E-value=4.2e+02 Score=31.07 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhc------cCCCCccceEEEEEECCCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA------IGHGKLKNVQVFHKIGNPLN 565 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~------~~~~~~~~~~V~~i~GD~t~ 565 (761)
++++||++|.|.- .+++++.++ ++..+|+.++- +++.-+..++ +....+.+.+++.+.||+.+
T Consensus 297 ~~~rVL~IG~G~G--~~~~~ll~~-~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 297 RPRRVLVLGGGDG--LALREVLKY-PDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCeEEEEcCCcc--HHHHHHHhC-CCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 4689999999954 355666543 23378999986 3344333322 11112334567779999864
No 410
>PLN02366 spermidine synthase
Probab=27.65 E-value=1.4e+02 Score=32.47 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=37.6
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhh----hhccCCCCccceEEEEEECCCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRA----SNAIGHGKLKNVQVFHKIGNPLN 565 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~----l~~~~~~~~~~~~V~~i~GD~t~ 565 (761)
.+++||++|.|.-+ +++++.++ ++...|++++- +++.-+. +... ...+.+.++..+.||+..
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEi--D~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEI--DKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEEC--CHHHHHHHHHhhhhh-ccccCCCceEEEEChHHH
Confidence 47899999999753 56777655 33467888875 2222121 2111 112455667779999865
No 411
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=27.52 E-value=90 Score=35.03 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCChhHHHHHhhheeeecccccc----cCCcchhhHHHHHHHHH
Q 004328 125 TQSLEDCLWEAWACLISSSTHLK----QRTRVERVIGFILAIWG 164 (761)
Q Consensus 125 ~~s~~da~w~~~~~~t~~g~g~~----d~t~~~rl~~~~l~l~G 164 (761)
+.++.++++.+...+.+.|.+.| +.++.++++.+++|+.|
T Consensus 346 ~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 346 GYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 58999999999989888877554 35578999988888776
No 412
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=27.50 E-value=1.9e+02 Score=29.21 Aligned_cols=67 Identities=16% Similarity=-0.050 Sum_probs=42.6
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|.+. .+..+++.|.+ .|..|.++...+.++..+..... ...+.++.++.+|.++.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~ 70 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGNDCAKDWFEEY---GFTEDQVRLKELDVTDTEECAEA 70 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcHHHHHHHHHHh---hccCCeEEEEEcCCCCHHHHHHH
Confidence 5788888664 68899999963 46777777653322111111111 11234577899999999988775
No 413
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.38 E-value=1.1e+02 Score=30.19 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=43.8
Q ss_pred eEEEEe-eccCHHHHHHHHhhhcCCCCEEEEEeCCC--hhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhh
Q 004328 501 RILLLG-WRPDVVEMIEEYDNYLGPGSVLEILSDVP--LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMN 575 (761)
Q Consensus 501 ~iLI~G-w~~~~~~li~eL~~~~~~gs~v~ii~~~p--~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~ 575 (761)
.+||.| -|..+..+++.|.+.. ...+.++...+ ..+..+.+..+ .-.+.+|.++..|.+|++.++++--.
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l---~~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIREL---ESAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHH---HHTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHH---HhCCCceeeeccCccCHHHHHHHHHH
Confidence 467777 4457888999997643 56788888762 22333333222 12367899999999999999997333
No 414
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=27.11 E-value=7.7e+02 Score=26.08 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHccccccccCCCeEEEEccCc----cH-HHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 177 EQFRNNMQKLREGAQMQVLESDHIIVCGVNS----HL-SFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 177 ~~l~~~~~~lr~G~~~~v~~~~HiII~G~~~----~~-~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
..+.+.++++|+.. .+-.+|+.+|-+ .| ..+++++.+.+. +=+++.|.|.++-+++.
T Consensus 72 ~~~~~~~~~ir~~~-----~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGv-------------dGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 72 EKIFELVKEIRKKE-----PDIPIVLMTYYNPIFQYGIERFFKEAKEAGV-------------DGLIIPDLPPEESEELR 133 (259)
T ss_dssp HHHHHHHHHHHHHC-----TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTE-------------EEEEETTSBGGGHHHHH
T ss_pred HHHHHHHHHHhccC-----CCCCEEEEeeccHHhccchHHHHHHHHHcCC-------------CEEEEcCCChHHHHHHH
Confidence 33334455555322 145677777643 22 457777776554 23567788877777655
Q ss_pred HhhcccCCCceEEEEeCCCCCHHHHHhccccccCeEEEec-CCC---CCccchHHHHHHHHhcCCCCCCCCCCEEE--EE
Q 004328 252 ENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILP-TKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EV 325 (761)
Q Consensus 252 ~~~~~~~~~~~V~~~~Gd~~~~~~L~ra~~~~A~avIIl~-~~~---d~~e~D~~~l~~vLal~~~~~~~~~~iIa--~v 325 (761)
+.... +|.+.+....--+.++-+++.. +.|+..|=+. ..+ .+.+.+...-..+-.+|+. .+.|+++ -+
T Consensus 134 ~~~~~--~gl~~I~lv~p~t~~~Ri~~i~-~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~---~~~Pv~vGFGI 207 (259)
T PF00290_consen 134 EAAKK--HGLDLIPLVAPTTPEERIKKIA-KQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH---TDLPVAVGFGI 207 (259)
T ss_dssp HHHHH--TT-EEEEEEETTS-HHHHHHHH-HH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT---TSS-EEEESSS
T ss_pred HHHHH--cCCeEEEEECCCCCHHHHHHHH-HhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhh---cCcceEEecCC
Confidence 43211 2677666554335555666544 4445444443 222 1112122222222233333 3688877 67
Q ss_pred eCcCcHHHHhhcCCCeEEEchh
Q 004328 326 SNPNTCELLKSLSGLKVEPVEN 347 (761)
Q Consensus 326 ~d~~~~~~l~~~g~d~Vi~~~~ 347 (761)
++++..+.+. .++|-||-=..
T Consensus 208 ~~~e~~~~~~-~~aDGvIVGSa 228 (259)
T PF00290_consen 208 STPEQAKKLA-AGADGVIVGSA 228 (259)
T ss_dssp -SHHHHHHHH-TTSSEEEESHH
T ss_pred CCHHHHHHHH-ccCCEEEECHH
Confidence 7888877777 77887765443
No 415
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=27.09 E-value=1.2e+02 Score=32.66 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR 244 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~ 244 (761)
..-.||||||++|..-+..|...+ ..|++.+.|+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g--------------~~VivTEiDP 247 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFG--------------ARVIVTEIDP 247 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcC--------------cEEEEeccCc
Confidence 567789999999999999887643 3567778765
No 416
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=27.08 E-value=67 Score=34.68 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
+|.|+|.|..|..++..|...+.. ..++++ |.+++..+.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~-----------~ei~l~-D~~~~~~~~~a 42 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIA-----------DELVLI-DINEEKAEGEA 42 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-----------CEEEEE-eCCcchhhHhH
Confidence 689999999999999998765431 256655 76665555443
No 417
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.07 E-value=5.7e+02 Score=24.53 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=31.0
Q ss_pred HHHHHHHHHHccccccccCCCeEEEEccCcc--HHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 178 QFRNNMQKLREGAQMQVLESDHIIVCGVNSH--LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 178 ~l~~~~~~lr~G~~~~v~~~~HiII~G~~~~--~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
.+.+..+++++|+ .-+||+++|-|-. +..++.++..... |.+ +++-++...|++.+..+.
T Consensus 6 ~i~~~~~~i~~~~-----~~~~iv~~GiGGS~lg~~~~~~~~~~~~---~~~------~~i~~~~~~D~~~~~~~~ 67 (158)
T cd05015 6 RIKEFAEKVRSGK-----KITDVVVIGIGGSDLGPRAVYEALKPYF---KGG------LRLHFVSNVDPDDLAELL 67 (158)
T ss_pred HHHHHHHHHhcCC-----CCCEEEEEecCccHHHHHHHHHHHHhhc---cCC------ceEEEEeCCCHHHHHHHH
Confidence 3444445555542 2589999998863 3445555543211 011 244445455665555544
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=26.93 E-value=1.1e+02 Score=36.23 Aligned_cols=70 Identities=9% Similarity=-0.034 Sum_probs=44.3
Q ss_pred CCCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhh-hccCCCCc------cceEEEEEECCCCCHHhH
Q 004328 498 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKL------KNVQVFHKIGNPLNFETL 569 (761)
Q Consensus 498 ~~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l-~~~~~~~~------~~~~V~~i~GD~t~~~~L 569 (761)
..+.++|.|. |..|..++++|.+ .|..|.++... .++...+ ..+....+ ...++.++.||.++.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn--~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRS--AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 4578999997 5689999999963 57888887653 2222111 10000000 112467799999999998
Q ss_pred Hhh
Q 004328 570 KDT 572 (761)
Q Consensus 570 ~~a 572 (761)
+++
T Consensus 154 ~~a 156 (576)
T PLN03209 154 GPA 156 (576)
T ss_pred HHH
Confidence 775
No 419
>PRK08324 short chain dehydrogenase; Validated
Probab=26.91 E-value=1.8e+02 Score=35.19 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..+.++|.|. |..|..++++|.+.+. .|+++ +++.+..+.+.+..... .++.++.+|.++++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-------------~Vvl~-~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-------------CVVLA-DLDEEAAEAAAAELGGP---DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-------------EEEEE-eCCHHHHHHHHHHHhcc---CcEEEEEecCCCHH
Confidence 4578899995 7799999999987543 45544 67776666655433111 24666789999988
Q ss_pred HHHhccc------cccCeEEEec
Q 004328 275 SYERAAA------NKARAIIILP 291 (761)
Q Consensus 275 ~L~ra~~------~~A~avIIl~ 291 (761)
.++++-- ...+.+|-.+
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~A 506 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNA 506 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 7765432 2456555444
No 420
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.87 E-value=1.9e+02 Score=35.05 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCChhHHHHHhhheeeeccccccc-----CC---cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 125 TQSLEDCLWEAWACLISSSTHLKQ-----RT---RVERV-IGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 125 ~~s~~da~w~~~~~~t~~g~g~~d-----~t---~~~rl-~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
..+..|+|..++.+++-.|.|++| .+ ..+++ |.+.++++-|+++-.||+.|.+-..+
T Consensus 584 m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 584 MCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred cCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345678777766666656667776 23 23444 44556777888888999988765443
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.85 E-value=1.7e+02 Score=29.64 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=43.5
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|.+ .|..|.++...+. ........+ .-.+.++.++.+|.++.+.+++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~-~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGD-DAAATAELV---EAAGGKARARQVDVRDRAALKAA 73 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 4679999965 568899999964 4778888876322 111111111 01123467799999999998886
No 422
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.72 E-value=1.7e+02 Score=30.02 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=44.2
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.+||.|.+ ..+..+++.|.+ .|..|.++...+. ...+....+ .. .+.++.++.+|.++.+.++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~~-~~~~~~~~~--~~-~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQD-GANAVADEI--NK-AGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCChH-HHHHHHHHH--Hh-cCceEEEEECCCCCHHHHHHH
Confidence 4689999985 468899999963 5778888876432 111111111 01 134577799999999998875
No 423
>PRK07062 short chain dehydrogenase; Provisional
Probab=26.71 E-value=1.5e+02 Score=30.70 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=45.0
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+. .+..++++|.+ .|..|.+++..+. ...+....+ ....++.++..+..|.+|.+.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~---~G~~V~~~~r~~~-~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLE---AGASVAICGRDEE-RLASAEARL-REKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCHH-HHHHHHHHH-HhhCCCceEEEEEecCCCHHHHHHH
Confidence 46889999875 68899999963 5778887776322 111111111 1123345677899999999988775
No 424
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=26.59 E-value=78 Score=36.23 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=17.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHh
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNK 218 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~ 218 (761)
....|+|+|||++|..-+..|+.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrd 57 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRD 57 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCcc
Confidence 47789999999999944444443
No 425
>PRK09242 tropinone reductase; Provisional
Probab=26.53 E-value=1.5e+02 Score=30.42 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=45.0
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..+++.|.+ .|..|.++... .+...+....+ ....++.++.++.+|.++.+.++++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~-~~~~~~~~~~l-~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARD-ADALAQARDEL-AEEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCC-HHHHHHHHHHH-HhhCCCCeEEEEECCCCCHHHHHHH
Confidence 3678888875 568899999964 57788888763 22222222111 1112345788899999999888765
No 426
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.46 E-value=1.2e+02 Score=30.95 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++++|.|.+ ..+..++++|.+ .|..|.++...+.. ..+....+ .-.+.+++++.+|-++.+.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~~~-~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLNDEA-AAAAAEAL---QKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCHHH-HHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 689999975 568899999963 57888888764321 11111111 00234567799999999998775
No 427
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.45 E-value=4.9e+02 Score=30.74 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=80.0
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCC--ChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDV--PLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMN 575 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~--p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~ 575 (761)
.++|||-|.| ..|.++.+++.++. -..+.+++.. ........+ ...+++.++.++.||-.|++.++++--+
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~--p~~i~l~~~~E~~~~~i~~el----~~~~~~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFN--PKEIILFSRDEYKLYLIDMEL----REKFPELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcC--CCEEEEecCchHHHHHHHHHH----HhhCCCcceEEEecccccHHHHHHHHhc
Confidence 4789998876 57999999998774 3467777752 111222223 2345578899999999999999998322
Q ss_pred ccccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccc
Q 004328 576 IQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKL 640 (761)
Q Consensus 576 ~~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~ 640 (761)
++-| +-.++-.+-.--..+..|.++=..|++-.+.+-..+.+.|++ +.|+ ++.++-
T Consensus 324 ----~kvd--~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~--~~V~-iSTDKA 379 (588)
T COG1086 324 ----HKVD--IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK--KFVL-ISTDKA 379 (588)
T ss_pred ----CCCc--eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC--EEEE-EecCcc
Confidence 1222 000111111111123478888899999999888888888874 4443 555443
No 428
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.41 E-value=1.1e+02 Score=28.87 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=44.8
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhh-hccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l-~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|.+. .+..+++.|... .+..|.++...++.++.+.+ ..+ +-++.++.++..|.++.+.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQEL---KAPGAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHHH---HHTTSEEEEEESETTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccccc---ccccccccccccccccccccccc
Confidence 4688999775 688999999754 24566777664223333322 222 12346778899999999998876
No 429
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.40 E-value=1.8e+02 Score=29.62 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=41.9
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++++|.|.+. .+..+++.|.+ .|..|.++.....+...+....+ +-.+.++.++.+|.++++.++++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~---~g~~v~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAE---EGYDIAVNYARSRKAAEETAEEI---EALGRKALAVKANVGDVEKIKEM 72 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 5789999864 68899999964 57777664332222211111111 11134577899999999988875
No 430
>PLN00015 protochlorophyllide reductase
Probab=26.26 E-value=2e+02 Score=30.83 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=37.5
Q ss_pred EEEccCc-cHHHHHHHHHhcc-cccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 201 IVCGVNS-HLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 201 II~G~~~-~~~~ll~eL~~~~-~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
||.|.+. .|..++++|.+.+ . .|++ ..++.+..+++.+..... +.++.++..|.++.+.+++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~-------------~V~~-~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~ 64 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW-------------HVVM-ACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQ 64 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC-------------EEEE-EeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHH
Confidence 4677654 7899999998765 3 4544 456666665554433111 2345555677777776654
Q ss_pred c
Q 004328 279 A 279 (761)
Q Consensus 279 a 279 (761)
+
T Consensus 65 ~ 65 (308)
T PLN00015 65 F 65 (308)
T ss_pred H
Confidence 4
No 431
>PRK12937 short chain dehydrogenase; Provisional
Probab=26.23 E-value=1.9e+02 Score=29.15 Aligned_cols=68 Identities=4% Similarity=-0.033 Sum_probs=42.7
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..+++.|.+ .|..+.++..............+ .. .+.++.++..|.++.+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAA---DGFAVAVNYAGSAAAADELVAEI--EA-AGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCCCHHHHHHHHHHH--Hh-cCCeEEEEECCCCCHHHHHHH
Confidence 4789999985 468899999964 56677666542221111111111 01 134577899999999988775
No 432
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.20 E-value=9.4e+02 Score=26.79 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=25.4
Q ss_pred HhcCCCCCCCCCCEEEEEeCcCcHH-HHhhcCCCeEEEch--hhHHHHHHH
Q 004328 308 LALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVE--NVASKLFVQ 355 (761)
Q Consensus 308 Lal~~~~~~~~~~iIa~v~d~~~~~-~l~~~g~d~Vi~~~--~~~~~lla~ 355 (761)
|.+|++.+.-++|+ +.|+.-+. +++..-.++.||.+ +..+++++.
T Consensus 299 lkIreiA~e~~Ipi---~enppLARaLY~~~~v~~~IP~e~y~aVaevL~~ 346 (363)
T COG1377 299 LKIREIAKEHGIPI---IENPPLARALYRQVEVGQQIPEELYKAVAEVLAY 346 (363)
T ss_pred HHHHHHHHHcCCce---ecChHHHHHHHHhcCccccCCHHHHHHHHHHHHH
Confidence 44455433234555 46776654 45555667788875 445555554
No 433
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=26.15 E-value=83 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhccc
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
+-+|+|+|.|..|..+++.|...+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC
Confidence 4689999999999999999988655
No 434
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=26.12 E-value=2.5e+02 Score=30.69 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChh---HHHHHHHhhcccCCCceEEEEeCCCCC
Q 004328 197 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK---QMDKLAENIAKDLNHIDILSKSCSLTL 272 (761)
Q Consensus 197 ~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~---~~e~l~~~~~~~~~~~~V~~~~Gd~~~ 272 (761)
...++|.|. |-.|..++++|.+.+. .|+.+...+.. ..+.+.... ......++.++.||-.+
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~-------------~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ-------------TVIGLDNFSTGYQHNLDDVRTSV-SEEQWSRFIFIQGDIRK 80 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-------------EEEEEeCCCCcchhhhhhhhhcc-ccccCCceEEEEccCCC
Confidence 457999996 7799999999998654 46655322211 122211111 00001245667899999
Q ss_pred HHHHHhccccccCeEEEecC
Q 004328 273 TKSYERAAANKARAIIILPT 292 (761)
Q Consensus 273 ~~~L~ra~~~~A~avIIl~~ 292 (761)
.+.|.++ ++.++.||=++.
T Consensus 81 ~~~l~~~-~~~~d~ViHlAa 99 (348)
T PRK15181 81 FTDCQKA-CKNVDYVLHQAA 99 (348)
T ss_pred HHHHHHH-hhCCCEEEECcc
Confidence 8887765 346887666664
No 435
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.09 E-value=3.1e+02 Score=30.59 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=22.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.+-+|+|+|.|-.|..+++.|...+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV 159 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC
Confidence 36789999999999999999987654
No 436
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=26.09 E-value=1.8e+02 Score=29.58 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=42.1
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|.+ .|..|.++...+.+........+ .-.+.++.++..|.++.+.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 70 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAA---RGWSVGINYARDAAAAEETADAV---RAAGGRACVVAGDVANEADVIAM 70 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HhcCCcEEEEEeccCCHHHHHHH
Confidence 36799999875 68889999964 56677665432222222211111 01123577899999999888765
No 437
>PRK06179 short chain dehydrogenase; Provisional
Probab=26.07 E-value=1.2e+02 Score=31.46 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=41.1
Q ss_pred CeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++++|.|.+. .+..++++|. ..|..|+++...+ +.. .... .++++.+|.+|.+.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~---~~g~~V~~~~r~~--~~~--------~~~~--~~~~~~~D~~d~~~~~~~ 63 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA---RAGYRVFGTSRNP--ARA--------APIP--GVELLELDVTDDASVQAA 63 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH---HCCCEEEEEeCCh--hhc--------cccC--CCeeEEeecCCHHHHHHH
Confidence 5789998764 6888999996 3588888887632 211 1122 356699999999999886
No 438
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.05 E-value=5.2e+02 Score=27.62 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=44.1
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 278 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r 278 (761)
+|-|+|.|..|..+++.|.+.++ +|++ -+++++..+.+.+. +... ..+.+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-------------~V~~-~dr~~~~~~~l~~~------g~~~------~~s~~~~~~ 55 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-------------DCVG-YDHDQDAVKAMKED------RTTG------VANLRELSQ 55 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHc------CCcc------cCCHHHHHh
Confidence 57899999999999999987654 4554 48888877776541 1111 123444433
Q ss_pred ccccccCeEEEecC
Q 004328 279 AAANKARAIIILPT 292 (761)
Q Consensus 279 a~~~~A~avIIl~~ 292 (761)
.+..++.|+++.+
T Consensus 56 -~~~~~dvIi~~vp 68 (298)
T TIGR00872 56 -RLSAPRVVWVMVP 68 (298)
T ss_pred -hcCCCCEEEEEcC
Confidence 2457897776665
No 439
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=25.99 E-value=4.4e+02 Score=28.33 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChh-----------------HHHhhhhccCCCCccceEEEEEE
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLD-----------------DRKRASNAIGHGKLKNVQVFHKI 560 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~-----------------er~~~l~~~~~~~~~~~~V~~i~ 560 (761)
...+|+|+|-|..+.++++.|....-.. ++++++...+ -|.+.....-.+--+.++|....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~--itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKS--VTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCe--EEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Q ss_pred CCCCCHHhHHhhhhhccccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEE
Q 004328 561 GNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEI 635 (761)
Q Consensus 561 GD~t~~~~L~~a~i~~~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi 635 (761)
++ .+.+.|.+. .+||+++.. +-..+.+.++|.+.+.+ .|.+..
T Consensus 96 ~~-~~~~~l~~f----------------dvVV~~~~~-------------~~~~~~in~~c~~~~ip--fI~a~~ 138 (286)
T cd01491 96 GP-LTTDELLKF----------------QVVVLTDAS-------------LEDQLKINEFCHSPGIK--FISADT 138 (286)
T ss_pred cc-CCHHHHhcC----------------CEEEEecCC-------------HHHHHHHHHHHHHcCCE--EEEEec
No 440
>PRK09134 short chain dehydrogenase; Provisional
Probab=25.95 E-value=2e+02 Score=29.54 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=43.0
Q ss_pred CCCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 498 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..+.+||.|.+. .+..+++.|. ..|..+.++.....+........+ ...+.+++++.+|.+|.+.++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~---~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~ 77 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLA---AHGFDVAVHYNRSRDEAEALAAEI---RALGRRAVALQADLADEAEVRAL 77 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 346789998875 6888999995 356677666543222211111111 01134577799999999988875
No 441
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.94 E-value=1.1e+02 Score=36.98 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=35.4
Q ss_pred hHHHHHhhheeeecccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 129 EDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR 180 (761)
Q Consensus 129 ~da~w~~~~~~t~~g~g~~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~~l~ 180 (761)
..++|.++..+...+....+.+..+|++..+-.++++++.+...+.+++.+.
T Consensus 383 ~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 383 LNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred ccchhhhhHHHhccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455644443444444455677889999888888888877777777776664
No 442
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=25.94 E-value=1.7e+02 Score=30.31 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=43.2
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+. .+..+++.|. ..|..|.+++.. +++.+.+. .. .+.++.++.+|.++.+.+.++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~---~~G~~V~~~~r~--~~~~~~l~----~~-~~~~~~~~~~D~~~~~~~~~~ 69 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFV---AEGARVAVLDKS--AAGLQELE----AA-HGDAVVGVEGDVRSLDDHKEA 69 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHH---HCCCEEEEEeCC--HHHHHHHH----hh-cCCceEEEEeccCCHHHHHHH
Confidence 47889999865 6889999996 468888888753 22222221 11 123467789999998887765
No 443
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.87 E-value=2.7e+02 Score=28.78 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=20.0
Q ss_pred CCeEEEEccC---ccHHHHHHHHHhccc
Q 004328 197 SDHIIVCGVN---SHLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~~---~~~~~ll~eL~~~~~ 221 (761)
...++|.|.+ -.|..++++|.+.+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~ 37 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA 37 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC
Confidence 4678889986 489999999987544
No 444
>PRK07023 short chain dehydrogenase; Provisional
Probab=25.79 E-value=1.9e+02 Score=29.31 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=41.4
Q ss_pred eEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 501 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 501 ~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++|.|.+ ..+..++++|.+ .|..|.++...+..+. . ...+.++.++.+|-++.+.++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~---~G~~v~~~~r~~~~~~---~------~~~~~~~~~~~~D~~~~~~~~~~ 63 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQ---PGIAVLGVARSRHPSL---A------AAAGERLAEVELDLSDAAAAAAW 63 (243)
T ss_pred eEEEecCCcchHHHHHHHHHh---CCCEEEEEecCcchhh---h------hccCCeEEEEEeccCCHHHHHHH
Confidence 68899985 468899999963 5778888765322211 1 11133577799999999998874
No 445
>PRK07680 late competence protein ComER; Validated
Probab=25.72 E-value=5.7e+02 Score=26.83 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
.|-|+|.|..|..+++.|.+.+.. ....+. +.+++++..+.+.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~---------~~~~v~-v~~r~~~~~~~~~~ 45 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAV---------KPSQLT-ITNRTPAKAYHIKE 45 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC---------CcceEE-EECCCHHHHHHHHH
Confidence 378999999999999999875420 001344 44777766666554
No 446
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.67 E-value=1.5e+02 Score=31.84 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=46.1
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+. .+..++++|. ..|..|.+.... .+...+....+ ....++..+.++..|-++.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La---~~G~~Vil~~R~-~~~~~~~~~~l-~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLA---AAGAEVILPVRN-RAKGEAAVAAI-RTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHH---HCCCEEEEEeCC-HHHHHHHHHHH-HHhCCCCceEEEEecCCCHHHHHHH
Confidence 47889999876 6888999996 357888887753 22222222211 1122345678899999999998876
No 447
>PRK06197 short chain dehydrogenase; Provisional
Probab=25.66 E-value=1.4e+02 Score=31.72 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=44.9
Q ss_pred CCCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 498 PKERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..+.++|.|.+ ..+..++++|.+ .|..|+++...+ +...+....+ ....++..+.++.+|.++.+.++++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~---~G~~vi~~~r~~-~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAA---KGAHVVLAVRNL-DKGKAAAARI-TAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHH-HHhCCCCceEEEECCCCCHHHHHHH
Confidence 34789999986 468899999964 477888777532 1111111111 1112244577899999999988875
No 448
>PRK06182 short chain dehydrogenase; Validated
Probab=25.65 E-value=95 Score=32.37 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=42.0
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.++|.|.+ ..+..++++|.+ .|..|.+++..+ ++.+.+. ...++++.+|.+|.+.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~~--~~l~~~~--------~~~~~~~~~Dv~~~~~~~~~ 64 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---QGYTVYGAARRV--DKMEDLA--------SLGVHPLSLDVTDEASIKAA 64 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH--------hCCCeEEEeeCCCHHHHHHH
Confidence 3689999974 578899999963 578888877632 2222221 11256689999999998775
No 449
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=25.51 E-value=1.6e+02 Score=32.06 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred CeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChh---HHHhhhhccCCCCcc---ceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLD---DRKRASNAIGHGKLK---NVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~---er~~~l~~~~~~~~~---~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|. |-.+..++++| ...|.+|+.++..+.. ++...+ ..... +..+.++.||-+|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L---~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFL---LEKGYEVHGLIRRSSSFNTQRIEHI----YEDPHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHH---HHCCCEEEEEecCCcccchhhhhhh----hhccccccccceeEEEeccCCHHHHHHH
No 450
>PRK06988 putative formyltransferase; Provisional
Probab=25.47 E-value=2.7e+02 Score=30.18 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=20.1
Q ss_pred eEEEEccCccHHHHHHHHHhccc
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
.|+++|.++.+...+++|...+.
T Consensus 4 kIvf~Gs~~~a~~~L~~L~~~~~ 26 (312)
T PRK06988 4 RAVVFAYHNVGVRCLQVLLARGV 26 (312)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCC
Confidence 69999999999999999987544
No 451
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.46 E-value=1.7e+02 Score=30.49 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=30.1
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
.+-|+|.|..|..+++.|...+.. +.-|.+.+++++..+.+.+
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~-----------~~~v~v~~r~~~~~~~~~~ 46 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVP-----------AKDIIVSDPSPEKRAALAE 46 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCC-----------cceEEEEcCCHHHHHHHHH
Confidence 588999999999999999875420 1223445777776666554
No 452
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=25.44 E-value=1.2e+02 Score=32.18 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=43.2
Q ss_pred ccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEE-EEeCCCCCHHHHHhcccc
Q 004328 204 GVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDIL-SKSCSLTLTKSYERAAAN 282 (761)
Q Consensus 204 G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~-~~~Gd~~~~~~L~ra~~~ 282 (761)
|.|-.|..|+++|.+.+.. ..|.++...+......... ...+. ++.||.++.+.|.+| ++
T Consensus 5 gsGflG~~iv~~Ll~~g~~-----------~~Vr~~d~~~~~~~~~~~~-------~~~~~~~~~~Di~d~~~l~~a-~~ 65 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYI-----------YEVRVLDRSPPPKFLKDLQ-------KSGVKEYIQGDITDPESLEEA-LE 65 (280)
T ss_pred CCcHHHHHHHHHHHHCCCc-----------eEEEEcccccccccchhhh-------cccceeEEEeccccHHHHHHH-hc
Confidence 4567899999999987631 1455552222221111111 12232 678999999999885 56
Q ss_pred ccCeEEEecC
Q 004328 283 KARAIIILPT 292 (761)
Q Consensus 283 ~A~avIIl~~ 292 (761)
.++.||-++.
T Consensus 66 g~d~V~H~Aa 75 (280)
T PF01073_consen 66 GVDVVFHTAA 75 (280)
T ss_pred CCceEEEeCc
Confidence 7887777654
No 453
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=25.36 E-value=1.8e+02 Score=29.56 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=42.4
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.++|.|.+ ..+..+++.|.+ .|..+++......+...+.+..+ .-.+.++..+.+|.+|.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHK---DGFKVVAGCGPNSPRRVKWLEDQ---KALGFDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHH---cCCEEEEEcCCChHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 567888875 568899999964 46677765432222222222211 11234566789999999988876
No 454
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=25.29 E-value=1.4e+02 Score=33.44 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=45.9
Q ss_pred CeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHH--HHHhhcccCCCceEEEEeCCCCCHH
Q 004328 198 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK--LAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 198 ~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~--l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
..++|.|. |..|..++++|.+.+. .|+++ .++....+. ........ ..++.++.||.++++
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~-------------~V~~l-~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~ 124 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGY-------------NVVAV-AREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDAD 124 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-EechhhccccchhhHHhhh--cCCceEEEeeCCCHH
Confidence 35788886 6789999999987654 46655 344322210 00000001 113445689999999
Q ss_pred HHHhcccc---ccCeEEEe
Q 004328 275 SYERAAAN---KARAIIIL 290 (761)
Q Consensus 275 ~L~ra~~~---~A~avIIl 290 (761)
.++++--. .++.||.+
T Consensus 125 ~l~~~~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 125 SLRKVLFSEGDPVDVVVSC 143 (390)
T ss_pred HHHHHHHHhCCCCcEEEEC
Confidence 99876433 57876653
No 455
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.22 E-value=7.8e+02 Score=25.50 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=72.2
Q ss_pred EEEEcc-Cc----cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 200 IIVCGV-NS----HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 200 iII~G~-~~----~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+++..| |. -...+++++.+.+. +-+++.|.+.++.+++.+.... .+.+.+......+..+
T Consensus 79 v~lm~y~n~~~~~G~~~fi~~~~~aG~-------------~giiipDl~~ee~~~~~~~~~~--~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 79 IVLMGYYNPILQYGLERFLRDAKEAGV-------------DGLIIPDLPPEEAEEFREAAKE--YGLDLIFLVAPTTPDE 143 (242)
T ss_pred EEEEEecCHHHHhCHHHHHHHHHHCCC-------------cEEEECCCCHHHHHHHHHHHHH--cCCcEEEEeCCCCCHH
Confidence 445455 64 13567888877654 3455667777777666644311 2566655454445667
Q ss_pred HHHhccccccCeEEEecCCC---CCccchHHHHHHHHhcCCCCCCCCCCEEE--EEeCcCcHHHHhhcCCCeEEEchhhH
Q 004328 275 SYERAAANKARAIIILPTKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVENVA 349 (761)
Q Consensus 275 ~L~ra~~~~A~avIIl~~~~---d~~e~D~~~l~~vLal~~~~~~~~~~iIa--~v~d~~~~~~l~~~g~d~Vi~~~~~~ 349 (761)
.++...-...+.|.+++... .....+.+....+-.+++. .+.|+++ -++++++.+.+..+ +|-++.-..+.
T Consensus 144 ~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 144 RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 77776554555555544322 1011112222223334443 3678876 57778788888877 87666544433
No 456
>COG1584 Predicted membrane protein [Function unknown]
Probab=25.11 E-value=96 Score=31.15 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=36.1
Q ss_pred hHHHHHhhheeeec---cc-ccccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004328 129 EDCLWEAWACLISS---ST-HLKQRTRVERVIGFILAIWGILFYSRLLSTMTE 177 (761)
Q Consensus 129 ~da~w~~~~~~t~~---g~-g~~d~t~~~rl~~~~l~l~Gi~~fa~li~~i~~ 177 (761)
.-+||+++..+... +. ++-+.++....++..++++|++.|..+++++-.
T Consensus 87 yG~FW~s~a~~~~~~~~g~~~~~~~~~~~~aig~yL~~WgiFT~~M~~~Tlk~ 139 (207)
T COG1584 87 YGLFWLSLALILLMPKLGILGYLDPAPLANALGWYLILWGIFTLLMFIGTLKS 139 (207)
T ss_pred ccHHHHHHHHHHHhhhcCccccccCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899988766543 22 334457778899999999999999888876543
No 457
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=25.09 E-value=3.4e+02 Score=29.11 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
+|.|+|.|..|..++..|...++ .+.+. +++++..+.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~ 42 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-------------DVTLW-ARDPEQAAEINA 42 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------EEEEE-ECCHHHHHHHHH
Confidence 58999999999999999987654 45544 677776776654
No 458
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=25.05 E-value=1.3e+02 Score=30.77 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=30.4
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHH
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDR 539 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er 539 (761)
..++++|+|+|+.+..=++.|. ..|..|+++++...+|.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll---~~ga~v~Vvs~~~~~el 49 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLL---KAGADVTVVSPEFEPEL 49 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCEEEEEcCCccHHH
Confidence 3578999999999888777774 56889999998653333
No 459
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.01 E-value=1.2e+02 Score=30.96 Aligned_cols=67 Identities=4% Similarity=-0.050 Sum_probs=44.1
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..+++.|.+ .|..|.+++..+. +..+....+. -.+.++.++..|.++.+.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~~-~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~ 72 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTAE-RLDEVAAEID---DLGRRALAVPTDITDEDQCANL 72 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHHH---HhCCceEEEecCCCCHHHHHHH
Confidence 4679999986 468899999963 5778888876332 2222211110 0123567899999999988765
No 460
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=25.00 E-value=4.2e+02 Score=28.69 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=42.0
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeC--CCCCHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSC--SLTLTKSY 276 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~G--d~~~~~~L 276 (761)
.|.|+|.|..|..+.-.|.+.++ +|+++ -+++. .+++.++ |+.+....| .......-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~-------------~V~~~-~R~~~-~~~l~~~------GL~i~~~~~~~~~~~~~~~ 60 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGH-------------DVTLL-VRSRR-LEALKKK------GLRIEDEGGNFTTPVVAAT 60 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-------------eEEEE-ecHHH-HHHHHhC------CeEEecCCCcccccccccc
Confidence 47899999999999999988764 45555 34443 5555432 555544333 11122222
Q ss_pred HhccccccCeEEEec
Q 004328 277 ERAAANKARAIIILP 291 (761)
Q Consensus 277 ~ra~~~~A~avIIl~ 291 (761)
.......+|-|||.+
T Consensus 61 ~~~~~~~~Dlviv~v 75 (307)
T COG1893 61 DAEALGPADLVIVTV 75 (307)
T ss_pred ChhhcCCCCEEEEEe
Confidence 233344788555544
No 461
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.99 E-value=1.9e+02 Score=29.14 Aligned_cols=67 Identities=7% Similarity=-0.020 Sum_probs=41.9
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|.. ..+..+++.|.+ .|..+.++...+.+......... ...+.+++++.+|.++.+.++++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLAR---AGADVVVHYRSDEEAAEELVEAV---EALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCCHHHHHHHHHHH---HhcCCceEEEECCcCCHHHHHHH
Confidence 579999875 468899999964 46667665553332211111111 01133467799999999988875
No 462
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=24.97 E-value=1.5e+02 Score=32.30 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=46.9
Q ss_pred cCCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 195 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 195 ~~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
....+++|+|.|-.+.+-++-..- +| .+|.|+ |.+.+.+..+-+ .++.++.++.-++.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~g-------lg------A~Vtil-d~n~~rl~~ldd-----~f~~rv~~~~st~~--- 223 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIG-------LG------ADVTIL-DLNIDRLRQLDD-----LFGGRVHTLYSTPS--- 223 (371)
T ss_pred CCCccEEEECCccccchHHHHHhc-------cC------CeeEEE-ecCHHHHhhhhH-----hhCceeEEEEcCHH---
Confidence 358999999999998887765433 22 267777 788777776543 33677777764433
Q ss_pred HHHhccccccCeEE
Q 004328 275 SYERAAANKARAII 288 (761)
Q Consensus 275 ~L~ra~~~~A~avI 288 (761)
.++. .+.+||-+|
T Consensus 224 ~iee-~v~~aDlvI 236 (371)
T COG0686 224 NIEE-AVKKADLVI 236 (371)
T ss_pred HHHH-HhhhccEEE
Confidence 3332 467788443
No 463
>PRK06181 short chain dehydrogenase; Provisional
Probab=24.86 E-value=1.3e+02 Score=30.91 Aligned_cols=66 Identities=6% Similarity=0.000 Sum_probs=42.9
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.+||.|.+ ..+..+++.|. ..|..|++++..+. +..+....+ . . .+..+.++.+|.++.+.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~---~~g~~Vi~~~r~~~-~~~~~~~~l-~-~-~~~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLA---RAGAQLVLAARNET-RLASLAQEL-A-D-HGGEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHH---HCCCEEEEEeCCHH-HHHHHHHHH-H-h-cCCcEEEEEccCCCHHHHHHH
Confidence 468999985 47888999985 35778888876432 211111111 0 1 133567789999999988775
No 464
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.86 E-value=1.7e+02 Score=23.54 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCCHHHHHhhcC-CeEEEEEEECCeEEecC--CCCCcccCCCEEEEEe
Q 004328 386 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP--NDDETLQPTDKILFIA 431 (761)
Q Consensus 386 ~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP--~~d~~I~~gD~Livia 431 (761)
.|.|+.|+...+. ...-+++..||+++ .+ -.++.|++||++=++.
T Consensus 14 ~~~tl~~lL~~l~~~~~~vav~vNg~iv-~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 14 DGESVAALLAREGLAGRRVAVEVNGEIV-PRSQHASTALREGDVVEIVH 61 (66)
T ss_pred CCCCHHHHHHhcCCCCCeEEEEECCeEe-CHHHcCcccCCCCCEEEEEE
Confidence 4789999876644 33444566688843 22 2678999999997764
No 465
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.85 E-value=2.3e+02 Score=30.37 Aligned_cols=69 Identities=9% Similarity=-0.006 Sum_probs=44.1
Q ss_pred CCCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 498 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 498 ~~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..+.+||.|.+. .+..++++|.+ .|..|++.+..+.+...+....+ .-.+.++.++.+|.++.+.+++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~---~Ga~Vv~~~~~~~~~~~~~~~~i---~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLAR---LGATVVVNDVASALDASDVLDEI---RAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCCchhHHHHHHHHH---HhcCCeEEEEeCCCCCHHHHHHH
Confidence 346889999875 68889999964 57777776542222222222111 01234677899999999888875
No 466
>PRK10637 cysG siroheme synthase; Provisional
Probab=24.74 E-value=3.1e+02 Score=31.55 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=38.0
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 565 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~ 565 (761)
..+++||+|+|+.+..=++.|.+ .|..|+|++..-.+|..+.. ..-++.++..+...
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~l~--------~~~~i~~~~~~~~~ 67 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTAWA--------DAGMLTLVEGPFDE 67 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHH--------hCCCEEEEeCCCCh
Confidence 45899999999998876777753 57789999875444443221 12235667776643
No 467
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=24.74 E-value=2.1e+02 Score=29.79 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=43.2
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeC--CChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD--LPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d--~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
++-+++-|.|-.|..+.++|...+. .++++.+ .+++.+.++..-+ +...++|++.|.++..
T Consensus 6 Kna~vtggagGIGl~~sk~Ll~kgi-------------k~~~i~~~~En~~a~akL~ai~----p~~~v~F~~~DVt~~~ 68 (261)
T KOG4169|consen 6 KNALVTGGAGGIGLATSKALLEKGI-------------KVLVIDDSEENPEAIAKLQAIN----PSVSVIFIKCDVTNRG 68 (261)
T ss_pred ceEEEecCCchhhHHHHHHHHHcCc-------------hheeehhhhhCHHHHHHHhccC----CCceEEEEEeccccHH
Confidence 4445555678899999999998765 2333323 2444555544322 2467899999999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
+++++
T Consensus 69 ~~~~~ 73 (261)
T KOG4169|consen 69 DLEAA 73 (261)
T ss_pred HHHHH
Confidence 87764
No 468
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.70 E-value=2.5e+02 Score=29.49 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=24.9
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChh
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK 245 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~ 245 (761)
.|.|+|. |..|..+++.+..... -.+|-+.|.+++
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~------------~elvav~d~~~~ 38 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAED------------LELVAAVDRPGS 38 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC------------CEEEEEEecCCc
Confidence 5889998 9999999988865322 146666676553
No 469
>PRK06172 short chain dehydrogenase; Provisional
Probab=24.36 E-value=1.5e+02 Score=30.32 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=44.0
Q ss_pred CCeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+ ..+..++++|.+ .|..|.+++..+. +..+....+ .. .+.++.++.+|.++.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~---~G~~v~~~~r~~~-~~~~~~~~~--~~-~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAR---EGAKVVVADRDAA-GGEETVALI--RE-AGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHH--Hh-cCCceEEEEcCCCCHHHHHHH
Confidence 4788999976 478899999964 5778888876432 111111111 01 123577899999999988775
No 470
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=24.35 E-value=98 Score=30.49 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=27.2
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 535 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p 535 (761)
..++|+|+|.|..+.+++.+|.+ .|.+|+++...|
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~---~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAK---AGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTT---TCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHh---hCCEEEEEecCC
Confidence 45999999999999999999964 468899987754
No 471
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=24.21 E-value=1.9e+02 Score=35.31 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.4
Q ss_pred chhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004328 152 VERV-IGFILAIWGILFYSRLLSTMTEQFRN 181 (761)
Q Consensus 152 ~~rl-~~~~l~l~Gi~~fa~li~~i~~~l~~ 181 (761)
.|.+ +.+.++++-++++-.||+++++.+.+
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~ 617 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQL 617 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4554 33445555567778888888877664
No 472
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.11 E-value=2e+02 Score=29.61 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|. ..|..|.+++..+. ...+....+. ....+.++.++..|.++.+.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~---~~G~~vv~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFA---REGAAVALADLDAA-LAERAAAAIA-RDVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHH---HCCCEEEEEeCCHH-HHHHHHHHHH-hccCCceEEEEEccCCCHHHHHHH
Confidence 46789999874 6888999996 46788888776322 2222211110 111234577899999999888765
No 473
>PRK06940 short chain dehydrogenase; Provisional
Probab=24.06 E-value=1.9e+02 Score=30.31 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=43.7
Q ss_pred CCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
++.++|-|-+..+..+++.|. .|..|.+++..+ +...+....+ .-.+.++.++.+|.+|.+.++++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~-~~~~~~~~~l---~~~~~~~~~~~~Dv~d~~~i~~~ 67 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE-ENLEAAAKTL---REAGFDVSTQEVDVSSRESVKAL 67 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH-HHHHHHHHHH---HhcCCeEEEEEeecCCHHHHHHH
Confidence 467788888778889999883 478888887532 2222222111 01134677899999999988876
No 474
>PRK08226 short chain dehydrogenase; Provisional
Probab=23.99 E-value=1.8e+02 Score=30.01 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|.+ .|..|++++... +..+....+ .-.+.++.++.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~---~G~~Vv~~~r~~--~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFAR---HGANLILLDISP--EIEKLADEL---CGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEecCCH--HHHHHHHHH---HHhCCceEEEECCCCCHHHHHHH
Confidence 47889998775 68889999964 578888887632 211111111 01234567799999999988875
No 475
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=23.92 E-value=1.9e+02 Score=33.91 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred CChhHHHHHHHhhcccCCCceEEEEeC---CCCCHHHHHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCC
Q 004328 242 LPRKQMDKLAENIAKDLNHIDILSKSC---SLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNS 318 (761)
Q Consensus 242 ~~~~~~e~l~~~~~~~~~~~~V~~~~G---d~~~~~~L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~ 318 (761)
.+-+-+.++++++ |.+++..-| +|+-.+-|+.+.--.|+.||||+++ .+.+ ++++...+..+
T Consensus 321 ~~g~g~~~~f~~~-----Ga~~vi~ggqt~nPS~~dll~ai~~~~a~~V~iLPNn-------~nii---~aA~qa~~~~~ 385 (530)
T TIGR03599 321 APGEGIAELFKSL-----GADVVIEGGQTMNPSTEDILKAIEKVNAKNVFVLPNN-------KNII---LAAEQAAELAD 385 (530)
T ss_pred cCCchHHHHHHHC-----CCCEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEecCC-------ccHH---HHHHHHHHHhC
Confidence 3444456665544 676664334 4555577777788888889998863 3434 33222211001
Q ss_pred CCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHHHHhcCCH
Q 004328 319 VPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGL 362 (761)
Q Consensus 319 ~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~~~~~Pg~ 362 (761)
.+ -.|+|...+..-+-|..+.+|..
T Consensus 386 ~~-------------------v~vvpT~s~~qgiaAl~~fdp~~ 410 (530)
T TIGR03599 386 KN-------------------VVVIPTKTIVQGLAALLVFDPEA 410 (530)
T ss_pred Cc-------------------EEEEeCCCHHHHHHHHHhhCCCC
Confidence 11 14778777777777777666653
No 476
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=23.87 E-value=5.3e+02 Score=30.00 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHHHHHHHcccccccc-CC--CeEEEEccCc--cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHh
Q 004328 179 FRNNMQKLREGAQMQVL-ES--DHIIVCGVNS--HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 253 (761)
Q Consensus 179 l~~~~~~lr~G~~~~v~-~~--~HiII~G~~~--~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~ 253 (761)
+.+..++++.|. .+.. .+ +|+|+||-|- -|...+.+...... ...+.+.+++..|+..+.++.+.
T Consensus 76 ~~~~~~~i~~~~-~~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~---------~~~~~~~f~~n~Dp~~l~~~l~~ 145 (486)
T PF00342_consen 76 MKEFAERIRSGA-WKGRTGKPITDVVVIGIGGSSLGPRALYEALKPYF---------SNPPRLHFLDNVDPADLARLLER 145 (486)
T ss_dssp HHHHHHHHHTTH-SBHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGT---------TSSCEEEEESSSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HccccCCceeEEEEEecchhhHHHHHHHHHhhhhc---------ccceEEEEeccCChHHHHHHHhc
Confidence 333444566665 2332 23 7999999874 56666666544222 11245677766788888877653
No 477
>COG2985 Predicted permease [General function prediction only]
Probab=23.76 E-value=51 Score=37.63 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=44.3
Q ss_pred EeeCCCCCCCCHHHHHhhcCCeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCC
Q 004328 379 LWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 436 (761)
Q Consensus 379 v~~~~~l~G~t~~e~~~~~~~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~ 436 (761)
+...++..||+++|+.....++.+=-+. .+++.+.|++|+.++.||.+-+.++++..
T Consensus 292 vVtn~~vlGk~l~~L~~~~~g~~I~Ri~-Ra~iElv~~~d~~lq~gDvl~vvg~~~~v 348 (544)
T COG2985 292 VVTNENVLGKRLRDLNLTEYGVFINRIN-RADIELVASDDVVLQKGDVLQVVGRARRV 348 (544)
T ss_pred EeechhhhccchhhcCccccceeeeehh-hcCccccCCcchhhhhcceeeeccchHHH
Confidence 3456789999999998765455543444 45557889999999999999999998755
No 478
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.71 E-value=4.3e+02 Score=25.82 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=21.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
...++-|+|+|+.|..+++.|...+-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~ 60 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM 60 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc
Confidence 47788899999999999999987543
No 479
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=23.68 E-value=2e+02 Score=29.12 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=41.5
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+.+||.|.+ ..+..++++|.+ .|..|.++.....+...+....+ .. .+..++++.+|-+|.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~D~~d~~~i~~~ 69 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQ---EGYTVAVNYQQNLHAAQEVVNLI--TQ-AGGKAFVLQADISDENQVVAM 69 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCChHHHHHHHHHH--Hh-CCCeEEEEEccCCCHHHHHHH
Confidence 368899986 478899999963 57777664322222222222111 01 133467799999999988875
No 480
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.61 E-value=1.7e+02 Score=31.78 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=31.1
Q ss_pred eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHH
Q 004328 199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 252 (761)
Q Consensus 199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~ 252 (761)
+|-|+|.|..|..++..|...++ +|.+. +++++..+.+..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~-------------~V~~~-~r~~~~~~~i~~ 45 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGV-------------PVRLW-ARRPEFAAALAA 45 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHH
Confidence 69999999999999999987654 46555 677766666654
No 481
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.57 E-value=2e+02 Score=34.79 Aligned_cols=75 Identities=11% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhc-ccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCH
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKY-HEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 273 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~-~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~ 273 (761)
...+|+|.|. |-.|..++++|.+. +. .|+.+ +++........ + ..++-++.||..+.
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------------~V~~l-~r~~~~~~~~~-----~--~~~~~~~~gDl~d~ 372 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------------EVYGL-DIGSDAISRFL-----G--HPRFHFVEGDISIH 372 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-------------EEEEE-eCCchhhhhhc-----C--CCceEEEeccccCc
Confidence 4567999996 77999999999874 23 46656 44433222211 1 11345568999987
Q ss_pred HHHHhccccccCeEEEec
Q 004328 274 KSYERAAANKARAIIILP 291 (761)
Q Consensus 274 ~~L~ra~~~~A~avIIl~ 291 (761)
+.+.+.-++.++.||=++
T Consensus 373 ~~~l~~~l~~~D~ViHlA 390 (660)
T PRK08125 373 SEWIEYHIKKCDVVLPLV 390 (660)
T ss_pred HHHHHHHhcCCCEEEECc
Confidence 664333356788766444
No 482
>PRK12746 short chain dehydrogenase; Provisional
Probab=23.49 E-value=2.2e+02 Score=29.06 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=42.3
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.++++|.|.+. .+..+++.|.+ .|..|.++.....+...+....+ .-.+.++.++.+|.+|.+.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~---~G~~v~i~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~i~~~ 74 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAN---DGALVAIHYGRNKQAADETIREI---ESNGGKAFLIEADLNSIDGVKKL 74 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCcEEEEEcCcCCHHHHHHH
Confidence 36899999764 68899999964 57777665332222222222111 01134567799999999998775
No 483
>PRK07440 hypothetical protein; Provisional
Probab=23.49 E-value=2.2e+02 Score=23.55 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCCHHHHHhhcC-CeEEEEEEECCeEEecCC---CCCcccCCCEEEEEe
Q 004328 386 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIA 431 (761)
Q Consensus 386 ~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~---~d~~I~~gD~Livia 431 (761)
.|.|+.|+...+. ..--+++..||+++ |. +++.|.+||++-++.
T Consensus 18 ~~~tl~~lL~~l~~~~~~vav~~N~~iv--~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 18 SGTSLPDLLQQLGFNPRLVAVEYNGEIL--HRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCCCHHHHHHHcCCCCCeEEEEECCEEe--CHHHcCceecCCCCEEEEEE
Confidence 4789999876544 34456666799843 43 567899999997764
No 484
>PRK06482 short chain dehydrogenase; Provisional
Probab=23.48 E-value=1.7e+02 Score=30.54 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=42.2
Q ss_pred CeEEEEeec-cCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 500 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 500 ~~iLI~Gw~-~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
+++||.|.+ ..+..++++|.+ .|..|.++... .++.+.+.. .. +..+.++.+|.+|.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~ 66 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLA---RGDRVAATVRR--PDALDDLKA----RY-GDRLWVLQLDVTDSAAVRAV 66 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH----hc-cCceEEEEccCCCHHHHHHH
Confidence 578999975 578899999963 57788887753 222222211 11 12466789999999988875
No 485
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=23.36 E-value=2.2e+02 Score=26.47 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=36.0
Q ss_pred eEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHH---HHHhhcccCCCceEEEEeCCCCCHH
Q 004328 199 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK---LAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 199 HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~---l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
+++|.|.+ ..|..++++|.+.+. ..++++ .++++..+. ..+.+... +.++.++.+|.++++
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~------------~~v~~~-~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~ 66 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGA------------RHLVLL-SRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRA 66 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhC------------CeEEEE-eCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence 57788864 588999999986543 134444 332211111 01111111 345666778888877
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 67 ~~~~~ 71 (180)
T smart00822 67 ALAAA 71 (180)
T ss_pred HHHHH
Confidence 76654
No 486
>PRK07985 oxidoreductase; Provisional
Probab=23.35 E-value=1.7e+02 Score=31.12 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=42.7
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+++||.|.+. .+..+++.|.+ .|..|.+.......+..+.+... ... .+.++.++.+|.++.+.+.++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~---~G~~Vi~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAR---EGADVAISYLPVEEEDAQDVKKI-IEE-CGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEecCCcchhhHHHHHHH-HHH-cCCeEEEEEccCCCHHHHHHH
Confidence 36899999865 68899999964 57788776432111111111110 001 133567799999999988765
No 487
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.35 E-value=3.1e+02 Score=31.49 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccc
Q 004328 196 ESDHIIVCGVNSHLSFILKQLNKYHE 221 (761)
Q Consensus 196 ~~~HiII~G~~~~~~~ll~eL~~~~~ 221 (761)
...+++|+|.|..|..+++.|...+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA 40 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35689999999999999888876543
No 488
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=23.33 E-value=4.1e+02 Score=30.12 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=31.9
Q ss_pred CeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHH
Q 004328 198 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 251 (761)
Q Consensus 198 ~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~ 251 (761)
.+|-|+|.|..|..++..|.+.++ .|++. |.+++.++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-------------~V~~~-D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-------------QVIGV-DINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHH
Confidence 569999999999999999988655 45544 78888887754
No 489
>PRK07856 short chain dehydrogenase; Provisional
Probab=23.29 E-value=2.6e+02 Score=28.62 Aligned_cols=59 Identities=7% Similarity=-0.040 Sum_probs=39.1
Q ss_pred CCeEEEEccCc-cHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328 197 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 275 (761)
Q Consensus 197 ~~HiII~G~~~-~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~ 275 (761)
...++|.|.+. .|..++++|.+.+. .|+++ +++++. . . . +.++.++.+|..+++.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~-------------~v~~~-~r~~~~--~---~---~--~~~~~~~~~D~~~~~~ 61 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA-------------TVVVC-GRRAPE--T---V---D--GRPAEFHAADVRDPDQ 61 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCChhh--h---h---c--CCceEEEEccCCCHHH
Confidence 46788888764 89999999987544 46555 554432 1 0 1 2345567899998887
Q ss_pred HHhc
Q 004328 276 YERA 279 (761)
Q Consensus 276 L~ra 279 (761)
++++
T Consensus 62 ~~~~ 65 (252)
T PRK07856 62 VAAL 65 (252)
T ss_pred HHHH
Confidence 7654
No 490
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=23.21 E-value=1.4e+02 Score=33.10 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=33.0
Q ss_pred CCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCCh-hHHHHHHHhhcccCCCceEEE
Q 004328 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILS 265 (761)
Q Consensus 197 ~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~-~~~e~l~~~~~~~~~~~~V~~ 265 (761)
-.-+||||||..|.-++..++..+. + |++.|.|| ..+|...+ |.+|+.
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA-------------~-ViVtEvDPI~AleA~Md-------Gf~V~~ 257 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA-------------R-VIVTEVDPIRALEAAMD-------GFRVMT 257 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC-------------e-EEEEecCchHHHHHhhc-------CcEEEE
Confidence 5568899999999999999876443 3 44557554 45555443 667763
No 491
>PLN02686 cinnamoyl-CoA reductase
Probab=23.17 E-value=3.1e+02 Score=30.27 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHh--hccc-CCCceEEEEeCCCC
Q 004328 196 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN--IAKD-LNHIDILSKSCSLT 271 (761)
Q Consensus 196 ~~~HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~--~~~~-~~~~~V~~~~Gd~~ 271 (761)
....|+|.|. |-.|..++++|...+. .|+++.+ +.+..+.+.+. +... ..+.++.++.||.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------------~V~~~~r-~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~ 117 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------------SVRIAVD-TQEDKEKLREMEMFGEMGRSNDGIWTVMANLT 117 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-------------EEEEEeC-CHHHHHHHHHHhhhccccccCCceEEEEcCCC
Confidence 4667999997 4689999999987654 4555433 33333332210 0000 00113556789999
Q ss_pred CHHHHHhccccccCeEEEe
Q 004328 272 LTKSYERAAANKARAIIIL 290 (761)
Q Consensus 272 ~~~~L~ra~~~~A~avIIl 290 (761)
+.+.+.++ ++.++.|+-+
T Consensus 118 d~~~l~~~-i~~~d~V~hl 135 (367)
T PLN02686 118 EPESLHEA-FDGCAGVFHT 135 (367)
T ss_pred CHHHHHHH-HHhccEEEec
Confidence 99988765 4556765543
No 492
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=23.16 E-value=1.3e+02 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=27.9
Q ss_pred eEEEEcc-CccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHH
Q 004328 199 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMD 248 (761)
Q Consensus 199 HiII~G~-~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e 248 (761)
+|.|+|. |..|..++-.|...+. + .+++++ |.+++..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l-----~------~ei~L~-D~~~~~~~ 40 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGL-----A------DEIVLI-DINEDKAE 40 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTT-----S------SEEEEE-ESSHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCC-----C------CceEEe-ccCcccce
Confidence 6899999 9999999998887533 2 367766 66654444
No 493
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=23.14 E-value=2.2e+02 Score=31.10 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=43.6
Q ss_pred CCeEEEEee-ccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw-~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
..++||.|. |-.+..++++|.+ .|..|+++...+ +........+ ..+..+.++.||.++.+.++++
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~---~G~~V~~~~r~~-~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ---RGYTVHATLRDP-AKSLHLLSKW----KEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh-HHHHHHHHhh----ccCCeEEEEECCCCCHHHHHHH
Confidence 468999996 5689999999964 577888776532 2211111111 0123567799999999988876
No 494
>PRK06114 short chain dehydrogenase; Provisional
Probab=23.09 E-value=2.1e+02 Score=29.43 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+.+||.|.+. .+..+++.|.+ .|..|.+++..+.+...+....+ .. .+.++.++.+|.++++.++++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~---~G~~v~~~~r~~~~~~~~~~~~l--~~-~~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQ---AGADVALFDLRTDDGLAETAEHI--EA-AGRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCcchHHHHHHHHH--Hh-cCCceEEEEcCCCCHHHHHHH
Confidence 36888988775 58889999964 57788887753222111111111 01 123466789999999988875
No 495
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=23.08 E-value=4.3e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.4
Q ss_pred eEEEEeeccCHHHHHHHHhhhcCCCC-EEEEEeCC
Q 004328 501 RILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSDV 534 (761)
Q Consensus 501 ~iLI~Gw~~~~~~li~eL~~~~~~gs-~v~ii~~~ 534 (761)
||+|+|-|..+..+++.|.. .|. .+++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~---~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR---SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH---CCCCEEEEEcCC
Confidence 68999999999999999964 343 68888763
No 496
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.02 E-value=4.8e+02 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred CCCeEEEEeeccCHHHHHHHHhhhcCCCC-EEEEEeC
Q 004328 498 PKERILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSD 533 (761)
Q Consensus 498 ~~~~iLI~Gw~~~~~~li~eL~~~~~~gs-~v~ii~~ 533 (761)
...+|+|+|-|..+..+++.|... |. .+++++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~ 56 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDR 56 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeC
Confidence 457899999999999999999643 44 7888886
No 497
>PRK06128 oxidoreductase; Provisional
Probab=23.02 E-value=3.4e+02 Score=28.78 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=40.6
Q ss_pred CCeEEEEccC-ccHHHHHHHHHhcccccccccccccCcceEEEEeC-CChhHHHHHHHhhcccCCCceEEEEeCCCCCHH
Q 004328 197 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD-LPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 274 (761)
Q Consensus 197 ~~HiII~G~~-~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d-~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~ 274 (761)
...++|.|.+ -.|..++++|...+. .|++..- .+....+++.+.... .+.++.++.+|.++.+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-------------~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~ 119 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-------------DIALNYLPEEEQDAAEVVQLIQA--EGRKAVALPGDLKDEA 119 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-------------EEEEEeCCcchHHHHHHHHHHHH--cCCeEEEEecCCCCHH
Confidence 3578889875 489999999987654 4554421 122223333222111 1345667789999888
Q ss_pred HHHhc
Q 004328 275 SYERA 279 (761)
Q Consensus 275 ~L~ra 279 (761)
.++++
T Consensus 120 ~v~~~ 124 (300)
T PRK06128 120 FCRQL 124 (300)
T ss_pred HHHHH
Confidence 77654
No 498
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.00 E-value=3.4e+02 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=20.1
Q ss_pred CCeEEEEccC---ccHHHHHHHHHhccc
Q 004328 197 SDHIIVCGVN---SHLSFILKQLNKYHE 221 (761)
Q Consensus 197 ~~HiII~G~~---~~~~~ll~eL~~~~~ 221 (761)
...++|.|.+ -.|..+++.|.+.+.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~ 32 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA 32 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC
Confidence 4688999985 489999999987544
No 499
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=22.96 E-value=2.2e+02 Score=29.27 Aligned_cols=67 Identities=7% Similarity=0.118 Sum_probs=43.3
Q ss_pred CCeEEEEeecc-CHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhh
Q 004328 499 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 572 (761)
Q Consensus 499 ~~~iLI~Gw~~-~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a 572 (761)
.+++||.|.+. .+..+++.|.+ .|..|.++... .++.+.....+ .-.+.+++++.+|.+|.+.++++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~---~G~~V~~~~r~-~~~~~~~~~~i---~~~~~~~~~~~~Dl~d~~~i~~~ 79 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE---AGARVVLSARK-AEELEEAAAHL---EALGIDALWIAADVADEADIERL 79 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCC-HHHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHH
Confidence 47899999754 68889999964 57778777763 22222221111 01134567799999999999764
No 500
>PF14544 DUF4443: Domain of unknown function (DUF4443); PDB: 2P8T_A.
Probab=22.90 E-value=1.8e+02 Score=26.38 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=31.1
Q ss_pred eEEEeeCCCCCCCCHHHHHhhcC-CeEEEEEEECCeEEecCCCCC--------------cccCCCEEEEEecCC
Q 004328 376 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDE--------------TLQPTDKILFIAPIH 434 (761)
Q Consensus 376 ei~v~~~~~l~G~t~~e~~~~~~-~~iviGI~r~G~~~lnP~~d~--------------~I~~gD~Livia~~~ 434 (761)
-+.+...|++-+..++|-..|+. ...+|.+.++|++++.| +.. ....||.+++...++
T Consensus 16 ai~~k~~~~~k~ielRDeAIR~GA~GAlIl~~Kngk~vfPe-d~r~L~~~~p~la~~l~~~~egD~IIIt~ae~ 88 (108)
T PF14544_consen 16 AIVVKNPPEFKSIELRDEAIRFGACGALILVFKNGKLVFPE-DERPLKEYYPELAEKLESLSEGDLIIITWAED 88 (108)
T ss_dssp EEEESS-----HHHHHHHHHHTT-SEEEEEEEETTEEE-TT-T--BGGGT-HHHHHH--S--TT-EEEEEE-SS
T ss_pred EEEecCCchhchHHHHHHHHHcCCCceEEEEEeCCcEECCC-CcchHHHHhHHHHHHhhCccCCCEEEEEccCC
Confidence 34444556776667777666665 46777888999987744 432 237788888877764
Done!