BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004329
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 23/298 (7%)
Query: 7 KEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
+ QL L GH VRG+ D IA++S D+TV+ W R + L GH+
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHS 139
Query: 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNE 123
S V +A SP+ + + S D V +W+ +G+ +QTL GH V GV D +
Sbjct: 140 SSVWGVA-FSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 124 DIVSSSVDSTLKRW-RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW-KGKK 180
I S+S D T+K W R G+L++ H++ ++ V P G+ I S S D T+KLW + +
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 253
Query: 181 CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA 239
QT GH+ +V G++ P G I SAS D T++LW GQ+L + GH++ V+ +
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313
Query: 240 SG-LIVSGSEDRFAKIW-KDGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 293
G I S S+D+ K+W ++G +Q++ H VW F +G + + SD T ++W
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 23/298 (7%)
Query: 7 KEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
+ QL L GH V G+ D IA++S D+TV+ W R + L GH+
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQHLQTLTGHS 344
Query: 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNE 123
S V +A SP+ + + S D V +W+ +G+ +QTL GH V GV D +
Sbjct: 345 SSVWGVA-FSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 398
Query: 124 DIVSSSVDSTLKRW-RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW-KGKK 180
I S+S D T+K W R G+L++ H++ + V P + I S S D T+KLW + +
Sbjct: 399 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ 458
Query: 181 CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA 239
QT GH+ +VRG++ P G I SAS D T++LW GQ+L + GH++ V +
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 518
Query: 240 SG-LIVSGSEDRFAKIW-KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 293
G I S S+D+ K+W ++G +Q++ H VW F +G I +A SD ++W
Sbjct: 519 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 153/298 (51%), Gaps = 23/298 (7%)
Query: 7 KEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
+ QL L GH V G+ D IA++S D+TV+ W R + L GH+
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHS 221
Query: 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNE 123
S V +A SP+ + + S D V +W+ +G+ +QTL GH V GV D +
Sbjct: 222 SSVRGVA-FSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 124 DIVSSSVDSTLKRW-RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW-KGKK 180
I S+S D T+K W R G+L++ H++ + V P G+ I S S D T+KLW + +
Sbjct: 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335
Query: 181 CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA 239
QT GH+ +V G++ P G I SAS D T++LW GQ+L + GH++ V +
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 395
Query: 240 SG-LIVSGSEDRFAKIW-KDGVCVQSIE-HPGCVWDAKFL-ENGDIVTACSDGVTRIW 293
G I S S+D+ K+W ++G +Q++ H VW F ++ I +A D ++W
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 23/291 (7%)
Query: 14 ELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLA 72
L H VRG+ D IA++S D+TV+ W R + L GH+S V +A
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHSSSVWGVA 64
Query: 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSV 130
SP+ + + S D V +W+ +G+ +QTL GH V GV D + I S+S
Sbjct: 65 -FSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 131 DSTLKRW-RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW-KGKKCAQTFVG 187
D T+K W R G+L++ H++ + V P G+ I S S D T+KLW + + QT G
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 178
Query: 188 HTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245
H+ +V G++ P G I SAS D T++LW GQ+L + GH++ V + G I S
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238
Query: 246 GSEDRFAKIW-KDGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 293
S+D+ K+W ++G +Q++ H V F +G + + SD T ++W
Sbjct: 239 ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 161/313 (51%), Gaps = 20/313 (6%)
Query: 6 FKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
F YQLS+ L+GH+ DVR + D+ +A+ SRD TVR WS D ++ + + G
Sbjct: 5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDD----QWLGTVVYTGQ- 59
Query: 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL--GSGEK-VQTLQGHKLQVTGVTLDN 122
F+ + + S E L+ GG DT + L SGE + TL GH+ V ++ +
Sbjct: 60 GFLNSVCYDSEKEL-----LLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD 114
Query: 123 EDIVSSSVDSTLKRWRKGKLVEFWEAHNAPI--QTVIRIPSGEIVSGSSDTTIKLWKGKK 180
++S S D T K W++G LV +AHNA + V+ + ++ S+D TIKLW+ K
Sbjct: 115 GVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK 174
Query: 181 CAQTFVG-HTDTVRGLSVMPGVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSH 238
+TF G H D VR L+V+ IS S+D I+L TG VL GH + VY I
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 239 ASGLIVSGSEDRFAKIW--KDGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTV 295
+G IVS EDR +IW ++G Q I P +W NGDI+ SD + RI++
Sbjct: 235 PNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQ 294
Query: 296 HSDKVADSLELEA 308
+ A E++
Sbjct: 295 EKSRWASEDEIKG 307
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 335 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 393
E LQ PG GQ VV+ G + W K+G+VV G ++ I +G YD
Sbjct: 38 EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 394 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 453
YVFDVDI DG+P KLP N SDNPY AAD +L + LP SYR Q+V+FIL+NT
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNT------- 149
Query: 454 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 511
G S P +S SA+ P+K + K +P K LI + D I I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKIN 201
Query: 512 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 570
N FD E+ A+ I D S SFA+ + W +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 571 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 630
P DI+R L++K + +D+ + IE+ N + +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 631 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 676
N +W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 335 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 393
E LQ PG GQ VV+ G + W K+G+VV G ++ I +G YD
Sbjct: 38 EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 394 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 453
YVFDVDI DG+P KLP N SDNPY AAD +L + LP SYR Q+V+ IL+NT
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNT------- 149
Query: 454 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 511
G S P +S SA+ P+K + K +P K LI + D IL I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTILNGIVKIN 201
Query: 512 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 570
N FD E+ A+ I D S SFA+ + W +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 571 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 630
P DI+R L++K + +D+ + IE+ N + +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 631 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 676
N +W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of
Saccharomyces Cerevisiae Doa1UFD3
Length = 362
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 152/320 (47%), Gaps = 57/320 (17%)
Query: 368 WDKLGEVVDGPDDGMNRPI-LDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLL 426
W K+G+VV G ++ I +G YDYVFDVDI DG+P KLP N SDNPY AAD +L
Sbjct: 7 WKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLA 66
Query: 427 KENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAI-PAKPTF- 484
+ LP SYR Q+V+FIL+NT G S P +S SA+ P+K +
Sbjct: 67 RYELPXSYRDQVVQFILKNTN---------------GISLDQPNDNASSSAVSPSKTSVX 111
Query: 485 KHIPKKGMLIFDAAQFDGILKKIMEFN-NALLFDLEKKNLSMSELETSRVAAVVKILKDT 543
K +P K LI + D I I++ N N FD E+ A+ I D
Sbjct: 112 KVLPVKQYLIXENYNPDTIFNGIVKINSNEKTFD--------DEILAQIGGALHDI--DE 161
Query: 544 SHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLM 603
S SFA+ + W + P DI+R L++K + +D+
Sbjct: 162 SWELLLSFANT-------IRSNW--EIKTPAYDIVR----------LIVKKLPYSSDI-K 201
Query: 604 EMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKNRS-----EILDA-FSSCYSS 656
+ IE+ N + LT +R + N F N +W L+ N+ E +D FS +
Sbjct: 202 DYIEEGLGNKNITLTXLT-VRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAK 260
Query: 657 SNKNVQLSYSTLILNYAVLL 676
++N+ ++ STLI NY+ L+
Sbjct: 261 QSQNLAIAVSTLIFNYSALV 280
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 31/306 (10%)
Query: 2 MDIDFKEYQLSSE--LRGHEDDV-RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSS 58
+D +++ +L S L+GH+D V + C N I + S D T++ WS
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGK-----CL 152
Query: 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGV 118
+ L+GHT V W S + + ++SG D + VW+ +GE + TL GH V +
Sbjct: 153 RTLVGHTGGV----WSS---QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 205
Query: 119 TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLW 176
L + +VS S D+TL+ W G+ + H A ++ V + +VSG+ D +K+W
Sbjct: 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QYDGRRVVSGAYDFMVKVW 264
Query: 177 --KGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVY 233
+ + C T GHT+ V L G+ ++S S D +IR+W + TG + + GH ++
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQ-FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 234 SIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIE----HPGCVWDAKFLENGDIVTACSD 287
++ ++VSG+ D KIW K G C+Q+++ H V +F +N ++T+ D
Sbjct: 324 GMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITSSDD 381
Query: 288 GVTRIW 293
G ++W
Sbjct: 382 GTVKLW 387
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 131/273 (47%), Gaps = 19/273 (6%)
Query: 42 VRFWSLDPSDKR-KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100
+R +D + +R + S K+L GH V +F +VSG D + VW
Sbjct: 94 IRQHRIDTNWRRGELKSPKVLKGHDDHVITCL------QFCGNRIVSGSDDNTLKVWSAV 147
Query: 101 SGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIR 158
+G+ ++TL GH V + + I+S S D TLK W G+ + H + ++ +
Sbjct: 148 TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMH 206
Query: 159 IPSGEIVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLW- 215
+ +VSGS D T+++W + +C +GH VR + G ++S ++D +++W
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWD 265
Query: 216 ALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIW--KDGVCVQSIEHPGCVWD 272
T L + GHT VYS+ G+ +VSGS D ++W + G C+ ++ +
Sbjct: 266 PETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 273 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLE 305
L++ +V+ +D +IW + + + +L+
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 36/295 (12%)
Query: 29 DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88
D+ I + RD T++ W DK +IL GHT V L ++ E +++G
Sbjct: 142 DDQKIVSGLRDNTIKIW-----DKNTLECKRILTGHTGSVLCL-------QYDERVIITG 189
Query: 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGK-----LV 143
D+ V VWD+ +GE + TL H V + +N +V+ S D ++ W L
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 249
Query: 144 EFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGV 201
H A + V+ IVS S D TIK+W C +T GH + L +
Sbjct: 250 RVLVGHRAAVN-VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 202 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW----- 255
++S S D TIRLW + G L + GH +V I + IVSG+ D K+W
Sbjct: 309 -VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-RFDNKRIVSGAYDGKIKVWDLVAA 366
Query: 256 ------KDGVCVQS-IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADS 303
+C+++ +EH G V+ +F E IV++ D IW +D A +
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWDFLNDPAAQA 420
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRW- 137
++ + +VSG D + +WD + E + L GH V + D I++ S DST++ W
Sbjct: 140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 199
Query: 138 -RKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK-----CAQTFVGHTDT 191
G+++ H+ +R +G +V+ S D +I +W + VGH
Sbjct: 200 VNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 192 VRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDR 250
V + I+SAS D TI++W T + + + GH + + + L+VSGS D
Sbjct: 259 VNVVD-FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL-QYRDRLVVSGSSDN 316
Query: 251 FAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIW 293
++W + G C++ +E H V +F +N IV+ DG ++W
Sbjct: 317 TIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVW 361
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 39/270 (14%)
Query: 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRW--RKG 140
+VS D + VWD +G+ +TL+GH V ++ D+ + S S D T+K W +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 141 KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSV 197
+ + H+ + +V +P+G+ IVS S D TIK+W+ + C +TF GH + VR V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MV 240
Query: 198 MP---GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIV----------YSIDSHASG-- 241
P G I S S+D T+R+W + T + E+ H +V YS S A+G
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 242 ---------LIVSGSEDRFAKIW--KDGVCVQS-IEHPGCVWDAKFLENGDIVTACSDGV 289
++SGS D+ K+W G+C+ + + H V F G + +C+D
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 290 T-RIWTVHSDKVADSLEL-EAYASELSQYK 317
T R+W + + +L E + + L +K
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 37/260 (14%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLG 63
DF+ ++ + GH+ +V + + N I ++SRD+T++ W + + K G
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-----YCVKTFTG 232
Query: 64 HTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN 122
H +V + PN+ +G L+ S D V VW + + E L+ H+ V ++
Sbjct: 233 HREWV---RMVRPNQ---DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 123 EDIVSSSVDSTLKRWRK-GKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLW--KGK 179
E SS ++T +K GK P ++SGS D TIK+W
Sbjct: 287 ESSYSSISEATGSETKKSGK------------------PGPFLLSGSRDKTIKMWDVSTG 328
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDS 237
C T VGH + VRG+ G I+S + D T+R+W + M+ + H V S+D
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 238 HASG-LIVSGSEDRFAKIWK 256
H + +V+GS D+ K+W+
Sbjct: 389 HKTAPYVVTGSVDQTVKVWE 408
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 102 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 151
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 270
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 256 K 256
K
Sbjct: 331 K 331
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 32 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 86
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 265
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 86 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 135
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 254
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 256 K 256
K
Sbjct: 315 K 315
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 249
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 80 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 129
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 248
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 256 K 256
K
Sbjct: 309 K 309
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 64
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 243
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 104 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 153
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 272
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 256 K 256
K
Sbjct: 333 K 333
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 34 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 88
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 267
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 76 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 125
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 244
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 256 K 256
K
Sbjct: 305 K 305
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 6 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 60
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 239
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 97 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 146
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 265
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 256 K 256
K
Sbjct: 326 K 326
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 27 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 81
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 260
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 80 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 129
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 248
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 256 K 256
K
Sbjct: 309 K 309
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 64
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 243
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 81 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 130
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 249
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 256 K 256
K
Sbjct: 310 K 310
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 11 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 65
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 244
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 20/260 (7%)
Query: 11 LSSELRGHEDDVRGICV-CDNVGI-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFV 68
L +R H D V I DN I ++SRD+++ W L DK + + L GH+ FV
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 69 GPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGV--TLDNEDIV 126
+ +S + +F +SG D + +WDL +G + GH V V +LDN IV
Sbjct: 434 EDVV-LSSDGQFA----LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 127 SSSVDSTLKRWR-----KGKLVEFWEAHNAPIQTVIRIPSG---EIVSGSSDTTIKLWKG 178
S+S D T+K W K + E E H + V P+ IVS S D T+K+W
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 179 KKCA--QTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
C T GHT V ++V P G S D + LW L + + ++++++
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Query: 236 DSHASGLIVSGSEDRFAKIW 255
+ + + + KIW
Sbjct: 609 CFSPNRYWLCAATEHGIKIW 628
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 8 EYQLSSELRGHEDDVRGICVCDNV---GIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
+Y +S GH D V + N I ++S D+TV+ W+L R L GH
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-----TLAGH 560
Query: 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKL 113
T +V +A +SP+ SGG D +VL+WDL G+K+ +L+ + +
Sbjct: 561 TGYVSTVA-VSPDGSL----CASGGKDGVVLLWDLAEGKKLYSLEANSV 604
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 79 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 128
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 247
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 256 K 256
K
Sbjct: 308 K 308
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 9 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 242
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 86 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 135
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 254
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 256 K 256
K
Sbjct: 315 K 315
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 249
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 86 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 135
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 254
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 256 K 256
K
Sbjct: 315 K 315
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 249
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 85 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 134
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 253
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 256 K 256
K
Sbjct: 314 K 314
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 139/294 (47%), Gaps = 34/294 (11%)
Query: 31 VGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90
+G AT S+ V+ P+ K+ L GHT V + SPN E+ L S
Sbjct: 3 MGSATQSKPTPVK-----PNYALKF----TLAGHTKAVSSVK-FSPNGEW----LASSSA 48
Query: 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFW 146
D ++ +W G+ +T+ GHKL ++ V + D+ +VS+S D TLK W GK ++
Sbjct: 49 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 147 EAHNAPIQTVIRIP-SGEIVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVG 202
+ H+ + P S IVSGS D ++++W K KC +T H+D V + G
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 203 IISASHDCTIRLW-ALTGQVLMEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KD 257
I+S+S+D R+W +GQ L ++ + + + S I++ + D K+W
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 258 GVCVQSI----EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
G C+++ C++ A F G IV+ D + IW + + ++ L+
Sbjct: 229 GKCLKTYTGHKNEKYCIF-ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 83 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 132
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 251
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 256 K 256
K
Sbjct: 312 K 312
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L + D ++ +W G+ +T+ GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 246
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 83 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 132
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G ++TL H V+ V D IVSSS D + W L +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KGK C +T+ GH + SV
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTG 251
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 256 K 256
K
Sbjct: 312 K 312
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGI- 203
H + +V P+GE + S S+D IK+W K +T GH + ++ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 204 ISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDGV 259
+SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G+
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 260 CVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Query: 15 LRGHEDDVRGICVCDNVG-----IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
L+GH + V C N I + S D +VR W D + K L H+
Sbjct: 106 LKGHSNYV----FCCNFNPQSNLIVSGSFDESVRIW-----DVKTGMCLKTLPAHSD--- 153
Query: 70 PLAWISPNEEFPEGGL-VSGGMDTMVLVWDLGSGEKVQTL---QGHKLQVTGVTLDNEDI 125
P++ + N + G L VS D + +WD SG+ ++TL + + + + I
Sbjct: 154 PVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 126 VSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVI---RIPSGE-IVSGSSDTTIKLW--K 177
+++++D+TLK W KGK ++ + H + + G+ IVSGS D + +W +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 178 GKKCAQTFVGHTDTVRGLSVMPGVGIISAS---HDCTIRLW 215
K+ Q GHTD V + P II+++ +D TI+LW
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 83 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 132
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G ++TL H V+ V D IVSSS D + W L +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D +KLW KGK C +T+ GH + SV
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTG 251
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K+W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 256 K 256
K
Sbjct: 312 K 312
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVGI- 203
H + +V P+GE + S S+D IK+W K +T GH + ++ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 204 ISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDGV 259
+SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G+
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 260 CVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 35/221 (15%)
Query: 15 LRGHEDDVRGICVCDNVG-----IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
L+GH + V C N I + S D +VR W D + K L H+
Sbjct: 106 LKGHSNYV----FCCNFNPQSNLIVSGSFDESVRIW-----DVKTGMCLKTLPAHSD--- 153
Query: 70 PLAWISPNEEFPEGGL-VSGGMDTMVLVWDLGSGEKVQTL---QGHKLQVTGVTLDNEDI 125
P++ + N + G L VS D + +WD SG+ ++TL + + + + I
Sbjct: 154 PVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 126 VSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVI---RIPSGE-IVSGSSDTTIKLW--K 177
+++++D+ LK W KGK ++ + H + + G+ IVSGS D + +W +
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 178 GKKCAQTFVGHTDTVRGLSVMPGVGIISAS---HDCTIRLW 215
K+ Q GHTD V + P II+++ +D TI+LW
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 83 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 132
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 251
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Query: 256 K 256
K
Sbjct: 312 K 312
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 246
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+ ++S D+T++ W D K L GH+++V N +VSG D
Sbjct: 83 LVSASDDKTLKIW-----DVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDE 132
Query: 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGK---LVEFWE 147
V +WD+ +G+ ++TL H V+ V D IVSSS D + W L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW---KGKKCAQTFVGHTD----TVRGLSVMP 199
N P+ V P+G+ I++ + D T+KLW KG KC +T+ GH + SV
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 251
Query: 200 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGS---EDRFAKIW 255
G I+S S D + +W L T +++ ++ GHT +V S H + I++ + D+ K++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Query: 256 K 256
K
Sbjct: 312 K 312
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 52 KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
K Y L GHT V + SPN E+ L S D ++ +W G+ +T+ GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVK-FSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 112 KLQVTGV--TLDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP-SGEIVS 166
KL ++ V + D+ +VS+S D TLK W GK ++ + H+ + P S IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 167 GSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTIRLW-ALTGQVL 222
GS D ++++W K KC +T H+D V + G I+S+S+D R+W +GQ L
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 223 MEMV--GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI----EHPGCVWDAK 274
++ + + + S I++ + D K+W G C+++ C++ A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF-AN 246
Query: 275 FLENGD--IVTACSDGVTRIWTVHSDKVADSLE 305
F G IV+ D + IW + + ++ L+
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
>pdb|3EBB|A Chain A, PlapP97 COMPLEX
pdb|3EBB|B Chain B, PlapP97 COMPLEX
pdb|3EBB|C Chain C, PlapP97 COMPLEX
pdb|3EBB|D Chain D, PlapP97 COMPLEX
Length = 304
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 37/295 (12%)
Query: 459 DPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 518
DP+TG SAY + +K + PKK + FD A IL K+ E N
Sbjct: 24 DPFTGNSAY--------RSAASKTXNIYFPKKEAVTFDQANPTQILGKLKELNGT---AP 72
Query: 519 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL---KTWPPAMIFPVI 575
E+K L+ +L +L+ C+S ++ L++L P ++FP +
Sbjct: 73 EEKKLTEDDL---------ILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPAL 123
Query: 576 DILRMTILHPDGASLLLKHVENQ--NDVLMEMIEKVSSNPT-LPANLLTGIRAVTNLFKN 632
DILR++I HP E + L+ ++ NP PAN L +R N F
Sbjct: 124 DILRLSIKHPSVNENFCNEKEGAQFSSHLINLL-----NPKGKPANQLLALRTFCNCFVG 178
Query: 633 SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVXXXX 692
+ R + S SNKN+ ++ +TL LNY+V + + EG++
Sbjct: 179 QAGQKLXXSQRESLXSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQC-LSL 237
Query: 693 XXXXXXXXXXVDSKYRALVAIGTLMLE-----GLVKKIALDFDVGNIARVAKASK 742
+++ +R LVA+GTL+ + L K + +D + + V++ +K
Sbjct: 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAK 292
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 123/274 (44%), Gaps = 52/274 (18%)
Query: 22 VRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80
+R +C D +AT + DR +R W + + RK IL GH + L + F
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI---ENRKI--VMILQGHEQDIYSLDY------F 174
Query: 81 PEGG-LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL---DNEDIVSSSVDSTLKR 136
P G LVSG D V +WDL +G+ TL VT V + D + I + S+D ++
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 137 W--RKGKLVEFWEA-------HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK------ 180
W G LVE ++ H + +V+ G+ +VSGS D ++KLW +
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 181 --------CAQTFVGHTDTVRGLSVMPG-VGIISASHDCTIRLW-ALTGQVLMEMVGHTA 230
C T++GH D V ++ I+S S D + W +G L+ + GH
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353
Query: 231 IVYSIDSHASG--------LIVSGSEDRFAKIWK 256
V S+ + A+G + +GS D A+IWK
Sbjct: 354 SVISV-AVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 17 GHEDDVRGICVC-DNVGIATSSRDRTVRFWSL----DPSDKRKYHSSKI---LLGHTSFV 68
GH+D V + D + + S DR+V+ W+L + SD + +S +GH FV
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 69 GPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN 122
+A + N+E+ ++SG D VL WD SG + LQGH+ V V + N
Sbjct: 314 LSVA-TTQNDEY----ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 138/329 (41%), Gaps = 54/329 (16%)
Query: 13 SELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL---GHTSFVG 69
+ LRGH V ++ + T + D+ +R + D +K K LL GH V
Sbjct: 115 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVY--DSINK------KFLLQLSGHDGGVW 166
Query: 70 PLAWISPNEEFPEGG-LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL----DNED 124
L ++ GG LVSG D V VWD+ G +GH V + + + +
Sbjct: 167 AL-------KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 125 IVSSSVDSTLKRW---RKGKLVEFWEAHNAPI------------------QTVIRIPSGE 163
IV+ S D+TL W ++ + + E H+ P+ +R SG
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279
Query: 164 ---IVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRG-LSVMPGVGIISASHDCTIRLWAL 217
+VSGS D T+ +W KC GHTD + + ISAS D TIR+W L
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 218 -TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIEHPGCVWDAK 274
G+++ + GHTA+V + + +VS + D + W D S H
Sbjct: 340 ENGELMYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 398
Query: 275 FLENGDIVTACSDGVTRIWTVHSDKVADS 303
F + +I+ + S+ I+ + S K+ +
Sbjct: 399 FYVSDNILVSGSENQFNIYNLRSGKLVHA 427
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 36/276 (13%)
Query: 53 RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112
+ +++ K + T+ G + + +F + +++G D M+ V+D + + + L GH
Sbjct: 103 KNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 113 LQVTGVTLDNEDI-VSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE---IVS 166
V + + I VS S D T++ W +KG +E HN+ ++ + + IV+
Sbjct: 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 167 GSSDTTIKLWKGKKCAQT---------------------FV----GHTDTVRGLSVMPGV 201
GS D T+ +WK K + FV GH +VR +S +
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 282
Query: 202 GIISASHDCTIRLWALTG-QVLMEMVGHTAIVYS-IDSHASGLIVSGSEDRFAKIW--KD 257
++S S+D T+ +W + + L + GHT +YS I H +S S D +IW ++
Sbjct: 283 -VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 258 GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIW 293
G + +++ + L + +V+A +DG R W
Sbjct: 342 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 137/329 (41%), Gaps = 54/329 (16%)
Query: 13 SELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL---GHTSFVG 69
+ LRGH V ++ + T + D+ +R + D +K K LL GH V
Sbjct: 115 TTLRGHXTSVITCLQFEDNYVITGADDKXIRVY--DSINK------KFLLQLSGHDGGVW 166
Query: 70 PLAWISPNEEFPEGG-LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL----DNED 124
L ++ GG LVSG D V VWD+ G +GH V + + + +
Sbjct: 167 AL-------KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 125 IVSSSVDSTLKRW---RKGKLVEFWEAHNAPI------------------QTVIRIPSGE 163
IV+ S D+TL W ++ + + E H+ P+ +R SG
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH 279
Query: 164 ---IVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRG-LSVMPGVGIISASHDCTIRLWAL 217
+VSGS D T+ +W KC GHTD + + ISAS D TIR+W L
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 218 -TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIEHPGCVWDAK 274
G++ + GHTA+V + + +VS + D + W D S H
Sbjct: 340 ENGELXYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 398
Query: 275 FLENGDIVTACSDGVTRIWTVHSDKVADS 303
F + +I+ + S+ I+ + S K+ +
Sbjct: 399 FYVSDNILVSGSENQFNIYNLRSGKLVHA 427
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 36/276 (13%)
Query: 53 RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112
+ +++ K + T+ G + +F + +++G D + V+D + + + L GH
Sbjct: 103 KNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 113 LQVTGVTLDNEDI-VSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE---IVS 166
V + + I VS S D T++ W +KG +E HN+ ++ + + IV+
Sbjct: 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 167 GSSDTTIKLWKGKKCAQT---------------------FV----GHTDTVRGLSVMPGV 201
GS D T+ +WK K + FV GH +VR +S +
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNI 282
Query: 202 GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYS-IDSHASGLIVSGSEDRFAKIW--KD 257
++S S+D T+ +W + + L + GHT +YS I H +S S D +IW ++
Sbjct: 283 -VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 258 GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIW 293
G +++ + L + +V+A +DG R W
Sbjct: 342 GELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 29 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 83
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 202 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
I SA D I LW L + M + V+S+
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 237
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 245
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 246 LAAATATGIKVFSL 259
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 133 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-----QFQIEADFI 187
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D +++W+L + + + TL
Sbjct: 188 GHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 89
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 202 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
I SA D I LW L + M + V+S+
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 252 LAAATATGIKVFSL 265
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-----QFQIEADFI 193
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D +++W+L + + + TL
Sbjct: 194 GHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 89
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 202 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
I SA D I LW L + M + V+S+
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 252 LAAATATGIKVFSL 265
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-----QFQIEADFI 193
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D +++W+L + + + TL
Sbjct: 194 GHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 89
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 202 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
I SA D I LW L + M + V+S+
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 252 LAAATATGIKVFSL 265
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-----QFQIEADFI 193
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D +++W+L + + + TL
Sbjct: 194 GHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 89
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 202 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSI 235
I SA D I LW L + M + V+S+
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 252 LAAATATGIKVFSL 265
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-----QFQIEADFI 193
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D +++W+L + + + TL
Sbjct: 194 GHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 129/291 (44%), Gaps = 35/291 (12%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSS-----KILLGHTSFVGPLAWISPNEEFPEGGLVS 87
+ ++SRD+T+ W +P D+ S + L GH++FV +A +S N F VS
Sbjct: 31 VVSTSRDKTLLSWGPNP-DRHSSECSYGLPDRRLEGHSAFVSDVA-LSNNGNFA----VS 84
Query: 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWR-KGKLVE 144
D + +W+L +G+ GH V V DN IVS D+ L+ W KG+ +
Sbjct: 85 ASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMH 144
Query: 145 FWE--AHNAPIQTVIRIPSGE---IVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV 197
AH + V PS + IVSG D +K+W + GHT+ V ++V
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV 204
Query: 198 MP-GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW 255
P G S+ D RLW LT G+ L EM A + I + + + ++ +I+
Sbjct: 205 SPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAATEKGIRIF 263
Query: 256 ----KDGVCVQSIEH-------PGCVWDAKFLENGDIVTACSDGVTRIWTV 295
KD + + EH P CV A + + + +D V R+W V
Sbjct: 264 DLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 24/217 (11%)
Query: 61 LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW---------DLGSGEKVQTLQGH 111
L GH +V LA P +VS D +L W + G + L+GH
Sbjct: 9 LTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 112 KLQVTGVTLDNED--IVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSG-EIVS 166
V+ V L N VS+S D +L+ W + G+ + H + +V P +IVS
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVS 126
Query: 167 GSSDTTIKLWKGK-KCAQTFV--GHTDTVRGLSVMPGVG---IISASHDCTIRLWAL-TG 219
G D +++W K +C T HTD V + P + I+S D +++W L TG
Sbjct: 127 GGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
Query: 220 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW 255
+++ ++ GHT V S+ G L S +D A++W
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG 63
+ + Q + GH DV + DN I + RD +R W++ K + +
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV----KGECMHTLSRGA 150
Query: 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--D 121
HT +V + SP+ + P +VSGG D +V VWDL +G V L+GH VT VT+ D
Sbjct: 151 HTDWVSCVR-FSPSLDAPV--IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
Query: 122 NEDIVSSSVDSTLKRWRKGKLVEFWE-AHNAPIQTVIRIPSGEIVSGSSDTTIKL 175
SS D + W K E A API + P+ + +++ I++
Sbjct: 208 GSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRI 262
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 18/224 (8%)
Query: 7 KEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
++ L L+GH V I I ++SRD+T+ W L + + L GH
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DN 122
+ FV + IS + +F +SG D + +WDL +G + GH V V DN
Sbjct: 86 SHFVSDVV-ISSDGQFA----LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 123 EDIVSSSVDSTLKRWRKGKLVEFW---EAHNAPIQTVIRIPSGE---IVSGSSDTTIKLW 176
IVS S D T+K W + ++ E+H+ + V P+ IVS D +K+W
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 177 KGKKC--AQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWAL 217
C +GHT + ++V P G S D LW L
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
I + D+ V+ W+L + H +GHT ++ + +SP+ SGG D
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNH-----IGHTGYLNTVT-VSPDGSL----CASGGKDG 237
Query: 93 MVLVWDLGSGEKVQTLQG 110
++WDL G+ + TL G
Sbjct: 238 QAMLWDLNEGKHLYTLDG 255
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 18/224 (8%)
Query: 7 KEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
++ L L+GH V I I ++SRD+T+ W L + + L GH
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DN 122
+ FV + IS + +F +SG D + +WDL +G + GH V V DN
Sbjct: 63 SHFVSDVV-ISSDGQFA----LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 123 EDIVSSSVDSTLKRWRKGKLVEFW---EAHNAPIQTVIRIPSGE---IVSGSSDTTIKLW 176
IVS S D T+K W + ++ E+H+ + V P+ IVS D +K+W
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Query: 177 KGKKC--AQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWAL 217
C +GHT + ++V P G S D LW L
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
I + D+ V+ W+L + H +GHT ++ + +SP+ SGG D
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNH-----IGHTGYLNTVT-VSPDGSL----CASGGKDG 214
Query: 93 MVLVWDLGSGEKVQTLQG 110
++WDL G+ + TL G
Sbjct: 215 QAMLWDLNEGKHLYTLDG 232
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 18/199 (9%)
Query: 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94
++SRD+T+ W L D++ + GH+ V ++ + + +S D +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LTADGAYA----LSASWDKTL 89
Query: 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNE--DIVSSSVDSTLKRWR-KGKLVEFWEAHNA 151
+WD+ +GE Q GHK V V +D + I+S S D T+K W KG+ + HN
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 152 PIQTVIRIP-------SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GV 201
+ V +P S I+S +D +K W + F+GH + L+ P G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 202 GIISASHDCTIRLWALTGQ 220
I SA D I LW L +
Sbjct: 210 LIASAGKDGEIXLWNLAAK 228
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)
Query: 107 TLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRK-------GKLVEFWEAHNAPIQTV 156
TL+GH VT + ++S+S D TL W+ G V ++ H+ +Q
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 IRIPSGEI-VSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSV-MPGVGIISASHDCTI 212
G +S S D T++LW + Q FVGH V + + IIS S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 213 RLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW---KDGVCVQ 262
++W + GQ L ++GH V + S I+S D+ K W + +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 263 SIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELEAYASELSQYK 317
I H + +G ++ +A DG +W + + K +L E+ + A ++Y
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYW 251
Query: 318 LCRKKVGGLKLEDL 331
L G+K+ L
Sbjct: 252 LAAATATGIKVFSL 265
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 10 QLSSELRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL 62
Q + L GH D V + V D+V I ++ D+ V+ W+L+ ++ +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN-----QFQIEADFI 193
Query: 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH 111
GH S + L P+G L+ S G D + +W+L + + TL
Sbjct: 194 GHNSNINTLT------ASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 80 FPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLK 135
F E G + S G D + V+ +GEK+ ++ H+ +V +D I + SVD +K
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 136 RWRK--GKLVEFWEAHNAPIQTVIRIPSGE---IVSGSSDTTIKLW--KGKKCAQTFVGH 188
W G+LV ++ H+ + S + +GSSD +KLW K+C T GH
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 189 TDTVRGLSVMPGVGII-SASHDCTIRLWALTG 219
T++V P ++ S S D T++LW T
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 131/307 (42%), Gaps = 50/307 (16%)
Query: 13 SELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPL 71
++ RGH V G+ D TSS D+T+R W K+ +S ++L
Sbjct: 882 ADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE----TKKVCKNSAVMLKQ------- 930
Query: 72 AWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVD 131
E +V + MVL D ++Q + G Q+ +T E VS
Sbjct: 931 ----------EVDVVFQENEVMVLAVD--HIRRLQLINGRTGQIDYLT---EAQVSCCCL 975
Query: 132 STLKRW----RKGKLVEFWEAHNAPI--------QTV--IRIPSGE--IVSGSSDTTIKL 175
S ++ + +E E N I +TV I+ + E ++S S D I++
Sbjct: 976 SPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQV 1035
Query: 176 WKGKKCAQTFV-GHTDTVRGLSVMPGVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVY 233
W + F+ GH +TV+ ++ ++S S D T+++W +TG + V H V
Sbjct: 1036 WNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVL 1095
Query: 234 SID-SHASGLIVSGSEDRFAKIWKDGVCVQSIE---HPGCVWDAKF-LENGDIVTACSDG 288
S D SH + S S D+ AKIW + + E H GCV + F +++ + T +G
Sbjct: 1096 SCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNG 1155
Query: 289 VTRIWTV 295
RIW V
Sbjct: 1156 EIRIWNV 1162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 125/307 (40%), Gaps = 40/307 (13%)
Query: 14 ELRGHEDDVRGICVC---DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP 70
E++ HED+V +C D+ IAT S D+ V+ W+ + + H+ V
Sbjct: 658 EIKAHEDEV--LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE-----HSEQVNC 710
Query: 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSS 128
+ + + L +G D + +WDL E T+ GH V +D + S
Sbjct: 711 CHFTNSSHHLL---LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASC 767
Query: 129 SVDSTLKRW-------RKG-KLVEFW---EAHNAPIQTVIRIPS----GEIVSGSSDTTI 173
S D TLK W RK + +F+ E ++ +++ S G + ++ I
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 174 KLW---KGKKCAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALTGQV-LMEMVG 227
L+ + GH T++ P + +++ S C + LW + + + G
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC-VELWNTDSRSKVADCRG 886
Query: 228 HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGDIVTAC 285
H + V+ + G ++ S+D+ ++W+ VC S D F EN +V A
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV 946
Query: 286 SDGVTRI 292
D + R+
Sbjct: 947 -DHIRRL 952
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 164 IVSGSSDTTIKLWK---GKKCAQTFVGHTDTVRGLSVMPGVGII-SASHDCTIRLW-ALT 218
I S +D T++++K G+K + H D V + I + S D +++W ++T
Sbjct: 636 IASCGADKTLQVFKAETGEKLLE-IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 219 GQVLMEMVGHTAIV---YSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSI-EHPGCVWD 272
G+++ H+ V + +S L+ +GS D F K+W C ++ H V
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNH 754
Query: 273 AKFLENGDIVTACS-DGVTRIWTVHSDKVADSLELEAY 309
+F + ++ +CS DG ++W S S+ ++ +
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF 792
>pdb|2K89|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Cis Isomer)
pdb|2K8A|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Trans Isomer)
pdb|2K8B|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Trans Isomer In Complex With Ubiquitin
Length = 80
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 386 ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQN 445
+ +G ++DYVF +D+ +G P+ KLPYN SD+P+ A +L K +L + Q+ +FI+ N
Sbjct: 10 LYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDN 69
Query: 446 T 446
T
Sbjct: 70 T 70
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 80 FPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLK 135
F + G + S G D + V+ +GEK+ ++ H+ +V ++D I + S D +K
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 136 RW--RKGKLVEFWEAHNAPIQTVIRIPSGE---IVSGSSDTTIKLW--KGKKCAQTFVGH 188
W GKLV ++ H+ + + +GS+D +KLW K+C T GH
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 189 TDTVRGLSVMPGVGII-SASHDCTIRLW 215
T++V P ++ S S D T+RLW
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 39/299 (13%)
Query: 14 ELRGHEDDVRGICVC---DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP 70
+++ HED+V +C D+ IAT S D+ V+ W D + + H+ H+ V
Sbjct: 659 DIKAHEDEV--LCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYD---EHSEQVNC 711
Query: 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSS 128
+ + + L +G D + +WDL E T+ GH V D+E + S
Sbjct: 712 CHFTNKSNHLL---LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 129 SVDSTLKRW-------RKGKLVE-FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK 180
S D TL+ W RK V+ F+ + P + V I S D I K K
Sbjct: 769 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 828
Query: 181 ----------CAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALTGQV-LMEMVG 227
A+ GH T++ P + +I+ S C + LW + ++ + + G
Sbjct: 829 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG 887
Query: 228 HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGDIVTA 284
H + V+ + G ++ S+D+ ++W+ VC S D F EN +V A
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 137/364 (37%), Gaps = 83/364 (22%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG 63
D + + + + GH + V D+ +A+ S D T+R W + +++RK + K
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 64 HTS--------FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL-GSGEKVQTLQGHKLQ 114
+ V +W + +G + VL++D+ SG + GH
Sbjct: 796 SSEDPPEDVEVIVKCCSWSA------DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 849
Query: 115 VTGVTLDNEDIVSS-----------SVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE 163
+ D ++ ++DS LK V H + + V+ P G
Sbjct: 850 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-------VADCRGHLSWVHGVMFSPDGS 902
Query: 164 -IVSGSSDTTIKLWKGKKCA------------------QTFVGHTDTVRGLSVMPG-VGI 203
++ S D TI++W+ KK +T V D +RGL ++ G G
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 962
Query: 204 IS---------------------ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG 241
I D I++ L +V VGH V I A G
Sbjct: 963 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 242 -LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 296
++S SED ++W D V +Q+ H V D + L++ +++ DG ++W V
Sbjct: 1023 KTLISSSEDSVIQVWNWQTGDYVFLQA--HQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1080
Query: 297 SDKV 300
+ ++
Sbjct: 1081 TGRI 1084
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 80 FPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLK 135
F + G + S G D + V+ +GEK+ ++ H+ +V ++D I + S D +K
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 136 RW--RKGKLVEFWEAHNAPIQTVIRIPSGE---IVSGSSDTTIKLW--KGKKCAQTFVGH 188
W GKLV ++ H+ + + +GS+D +KLW K+C T GH
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 189 TDTVRGLSVMPGVGII-SASHDCTIRLW 215
T++V P ++ S S D T+RLW
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 122/299 (40%), Gaps = 39/299 (13%)
Query: 14 ELRGHEDDVRGICVC---DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP 70
+++ HED+V +C D+ IAT S D+ V+ W D + + H+ H+ V
Sbjct: 652 DIKAHEDEV--LCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYD---EHSEQVNC 704
Query: 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSS 128
+ + + L +G D + +WDL E T+ GH V D+E + S
Sbjct: 705 CHFTNKSNHLL---LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 129 SVDSTLKRW-------RKG-KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK 180
S D TL+ W RK + F+ + P + V I S D I K K
Sbjct: 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821
Query: 181 ----------CAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALTGQV-LMEMVG 227
A+ GH T++ P + +I+ S C + LW + ++ + + G
Sbjct: 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG 880
Query: 228 HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGDIVTA 284
H + V+ + G ++ S+D+ ++W+ VC S D F EN +V A
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 94 VLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGKLVEFWEAHNA 151
V +W++ S KV +GH V GV D +++S D T++ W K+ + N+
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK-----NS 918
Query: 152 PIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGL--------SVMPGVGI 203
I I ++V ++T + + Q G T + L + P +
Sbjct: 919 AIVLKQEI---DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975
Query: 204 IS-ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---- 256
++ D I++ L +V VGH V I A G ++S SED ++W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 257 DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 300
D V +Q+ H V D + L++ +++ DG ++W V + ++
Sbjct: 1036 DYVFLQA--HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDK-RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91
I T+S D T W ++ + +H GH + V L ++P+E VSGG D
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFH------GHGADVLCLD-LAPSE--TGNTFVSGGCD 219
Query: 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWE 147
+VWD+ SG+ VQ + H+ V V + S S D+T + + R + V +
Sbjct: 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 148 AHNAPI--QTVIRIPSGEIV-SGSSDTTIKLW---KGKKCAQTFVGHTDTVRGLSVMP-G 200
+ +V SG ++ +G +D TI +W KG + + F GH + V L V P G
Sbjct: 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDG 338
Query: 201 VGIISASHDCTIRLWA 216
S S D T+R+WA
Sbjct: 339 TAFCSGSWDHTLRVWA 354
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 33/229 (14%)
Query: 15 LRGHEDDVRGICVC-------DNVGIATSSRDRTVRFWSLDPSDKRKYHS--SKILLGHT 65
L GH D V I D+ + + SRD+TV W L ++ Y K L GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNE 123
FV LA +S F +S D + +WDL +G + GH+ +V V DN
Sbjct: 77 HFVSDLA-LSQENCFA----ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 124 DIVSSSVDSTLKRWRKGKLVEFWEA----HNAPIQTVIRIP-----------SGEIVSGS 168
I+S+ + +K W +F A H+ + V P + S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 169 SDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLW 215
D +K+W + TF H V LS+ P G I + D + +W
Sbjct: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 164 IVSGSSDTTIKLWKGKKCAQT---------FVGHTDTVRGLSV-MPGVGIISASHDCTIR 213
++SGS D T+ +WK + Q GH V L++ IS+S D T+R
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 214 LWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW 255
LW L TG VGH + VYS+ S + I+S +R K+W
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 147 EAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMP-G 200
E H ++ V P G + S S D T +WK + C T GH + V+ ++ P G
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 201 VGIISASHDCTIRLWALTGQVLMEMVG----HTAIVYSIDSHASG-LIVSGSEDRFAKIW 255
+ + S D ++ +W + + E V HT V + H S L+ S S D K++
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Query: 256 K----DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 293
+ D VC ++E H VW F +G + +CSD T RIW
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 8 EYQLSSELRGHEDDVRGICVCDNVGI-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS 66
+++ + L GHE++V+ + + + AT SRD++V W +D D +Y +L HT
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED--EYECVSVLNSHTQ 151
Query: 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV--QTLQGHKLQVTGVTLD--N 122
V + W P++E L S D V ++ + V TL+GH+ V + D
Sbjct: 152 DVKHVVW-HPSQEL----LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 123 EDIVSSSVDSTLKRWRK 139
+ + S S D T++ WR+
Sbjct: 207 QRLASCSDDRTVRIWRQ 223
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117
S+ L GHT ++ ++ N+ +V+ DT +WD+ +G++ T GH V
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 118 VTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172
++L D VS + D++ K W R+G + + H + I + P+G +GS D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 173 IKLWKGKKCAQTFV-GHTDTVRGLSVM----PGVGIISASHDCTIRLW-ALTGQVLMEMV 226
+L+ + + H + + G++ + G +++ D +W AL +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 227 GHTAIVYSIDSHASGLIV-SGSEDRFAKIWK 256
GH V + G+ V +GS D F KIW
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDN-VGIATSSRDRTVRFWSLDPSDK-RKYHSSKILL 62
D +E GHE D+ IC N AT S D T R + L + Y I+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 63 GHTSFVGPLAWISPNEEFPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GV 118
G TS F + G L++G D VWD ++ L GH +V+ GV
Sbjct: 272 GITSV-----------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 119 TLDNEDIVSSSVDSTLKRW 137
T D + + S DS LK W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
++S EL GH + D+ I TSS D T W ++ + + HT V
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-----HTGDVM 188
Query: 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVS 127
L+ ++P+ VSG D +WD+ G QT GH+ + + + +
Sbjct: 189 SLS-LAPDTRL----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 128 SSVDSTLKRW--RKGKLVEFWEAHN--APIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC- 181
S D+T + + R + + + N I +V SG +++G D +W K
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 182 -AQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLW 215
A GH + V L V G+ + + S D +++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117
S+ L GHT ++ ++ N+ +V+ DT +WD+ +G++ T GH V
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 118 VTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172
++L D VS + D++ K W R+G + + H + I + P+G +GS D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 173 IKLWKGKKCAQTFV-GHTDTVRGLSVM----PGVGIISASHDCTIRLW-ALTGQVLMEMV 226
+L+ + + H + + G++ + G +++ D +W AL +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 227 GHTAIVYSIDSHASGLIV-SGSEDRFAKIWK 256
GH V + G+ V +GS D F KIW
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)
Query: 46 SLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV 105
++DP + + + + L GH + + + W + + LVS D +++WD + KV
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIWDSYTTNKV 90
Query: 106 QT----------------------------------------------LQGHKLQVTGVT 119
L GH ++
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 120 -LDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGEI-VSGSSDTTIKL 175
LD+ IV+SS D+T W G+ + H + ++ P + VSG+ D + KL
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 176 WKGKK--CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIV 232
W ++ C QTF GH + + P G + S D T RL+ L + H I+
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 233 YSID----SHASGLIVSGSEDRFAKIW 255
I S + L+++G +D +W
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDN-VGIATSSRDRTVRFWSLDPSDK-RKYHSSKILL 62
D +E GHE D+ IC N AT S D T R + L + Y I+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 63 GHTSFVGPLAWISPNEEFPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GV 118
G TS F + G L++G D VWD ++ L GH +V+ GV
Sbjct: 272 GITSV-----------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 119 TLDNEDIVSSSVDSTLKRW 137
T D + + S DS LK W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
++S EL GH + D+ I TSS D T W D + GHT V
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW-----DIETGQQTTTFTGHTGDVM 188
Query: 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVS 127
L+ ++P+ VSG D +WD+ G QT GH+ + + + +
Sbjct: 189 SLS-LAPDTRL----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 128 SSVDSTLKRW--RKGKLVEFWEAHN--APIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC- 181
S D+T + + R + + + N I +V SG +++G D +W K
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 182 -AQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLW 215
A GH + V L V G+ + + S D +++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117
S+ L GHT ++ ++ N+ +V+ DT +WD+ +G++ T GH V
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 118 VTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172
++L D VS + D++ K W R+G + + H + I + P+G +GS D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 173 IKLWKGKKCAQTFV-GHTDTVRGLSVM----PGVGIISASHDCTIRLW-ALTGQVLMEMV 226
+L+ + + H + + G++ + G +++ D +W AL +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 227 GHTAIVYSIDSHASGLIV-SGSEDRFAKIWK 256
GH V + G+ V +GS D F KIW
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDN-VGIATSSRDRTVRFWSLDPSDK-RKYHSSKILL 62
D +E GHE D+ IC N AT S D T R + L + Y I+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 63 GHTSFVGPLAWISPNEEFPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GV 118
G TS F + G L++G D VWD ++ L GH +V+ GV
Sbjct: 272 GITSV-----------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 119 TLDNEDIVSSSVDSTLKRW 137
T D + + S DS LK W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
++S EL GH + D+ I TSS D T W D + GHT V
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW-----DIETGQQTTTFTGHTGDVM 188
Query: 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVS 127
L+ ++P+ VSG D +WD+ G QT GH+ + + + +
Sbjct: 189 SLS-LAPDTRL----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 128 SSVDSTLKRW--RKGKLVEFWEAHN--APIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC- 181
S D+T + + R + + + N I +V SG +++G D +W K
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 182 -AQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLW 215
A GH + V L V G+ + + S D +++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117
S+ L GHT ++ ++ N+ +V+ DT +WD+ +G++ T GH V
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 118 VTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172
++L D VS + D++ K W R+G + + H + I + P+G +GS D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 173 IKLWKGKKCAQTFV-GHTDTVRGLSVM----PGVGIISASHDCTIRLW-ALTGQVLMEMV 226
+L+ + + H + + G++ + G +++ D +W AL +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 227 GHTAIVYSIDSHASGLIV-SGSEDRFAKIWK 256
GH V + G+ V +GS D F KIW
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)
Query: 46 SLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV 105
++DP + + + + L GH + + + W + + LVS D +++WD + KV
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIWDSYTTNKV 90
Query: 106 QT----------------------------------------------LQGHKLQVTGVT 119
L GH ++
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 120 -LDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGEI-VSGSSDTTIKL 175
LD+ IV+SS D+T W G+ + H + ++ P + VSG+ D + KL
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 176 WKGKK--CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIV 232
W ++ C QTF GH + + P G + S D T RL+ L + H I+
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 233 YSID----SHASGLIVSGSEDRFAKIW 255
I S + L+++G +D +W
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDN-VGIATSSRDRTVRFWSLDPSDK-RKYHSSKILL 62
D +E GHE D+ IC N AT S D T R + L + Y I+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 63 GHTSFVGPLAWISPNEEFPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GV 118
G TS F + G L++G D VWD ++ L GH +V+ GV
Sbjct: 272 GITSV-----------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 119 TLDNEDIVSSSVDSTLKRW 137
T D + + S DS LK W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
++S EL GH + D+ I TSS D T W ++ + + HT V
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-----HTGDVM 188
Query: 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVS 127
L+ ++P+ VSG D +WD+ G QT GH+ + + + +
Sbjct: 189 SLS-LAPDTRL----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 128 SSVDSTLKRW--RKGKLVEFWEAHN--APIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC- 181
S D+T + + R + + + N I +V SG +++G D +W K
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 182 -AQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLW 215
A GH + V L V G+ + + S D +++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117
S+ L GHT ++ ++ N+ +V+ DT +WD+ +G++ T GH V
Sbjct: 147 SRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 200
Query: 118 VTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172
++L D VS + D++ K W R+G + + H + I + P+G +GS D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 173 IKLWKGKKCAQTFV-GHTDTVRGLSVM----PGVGIISASHDCTIRLW-ALTGQVLMEMV 226
+L+ + + H + + G++ + G +++ D +W AL +
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 227 GHTAIVYSIDSHASGLIV-SGSEDRFAKIWK 256
GH V + G+ V +GS D F KIW
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)
Query: 46 SLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV 105
++DP + + + + L GH + + + W + + LVS D +++WD + KV
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIWDSYTTNKV 101
Query: 106 QT----------------------------------------------LQGHKLQVTGVT 119
L GH ++
Sbjct: 102 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 161
Query: 120 -LDNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGEI-VSGSSDTTIKL 175
LD+ IV+SS D+T W G+ + H + ++ P + VSG+ D + KL
Sbjct: 162 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 221
Query: 176 WKGKK--CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIV 232
W ++ C QTF GH + + P G + S D T RL+ L + H I+
Sbjct: 222 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 281
Query: 233 YSID----SHASGLIVSGSEDRFAKIW 255
I S + L+++G +D +W
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVW 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 5 DFKEYQLSSELRGHEDDVRGICVCDN-VGIATSSRDRTVRFWSLDPSDK-RKYHSSKILL 62
D +E GHE D+ IC N AT S D T R + L + Y I+
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 63 GHTSFVGPLAWISPNEEFPEGG--LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GV 118
G TS F + G L++G D VWD ++ L GH +V+ GV
Sbjct: 283 GITSV-----------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 331
Query: 119 TLDNEDIVSSSVDSTLKRW 137
T D + + S DS LK W
Sbjct: 332 TDDGMAVATGSWDSFLKIW 350
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69
++S EL GH + D+ I TSS D T W ++ + + HT V
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-----HTGDVM 199
Query: 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVS 127
L+ ++P+ VSG D +WD+ G QT GH+ + + + +
Sbjct: 200 SLS-LAPDTRL----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 128 SSVDSTLKRW--RKGKLVEFWEAHN--APIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC- 181
S D+T + + R + + + N I +V SG +++G D +W K
Sbjct: 255 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Query: 182 -AQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLW 215
A GH + V L V G+ + + S D +++W
Sbjct: 315 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 67/288 (23%)
Query: 8 EYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLD--PSDKRKYHSSKILLG 63
E Q LRGH+ + G+ N+ + ++S D T+ W ++ P + R + I G
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
HT+ V +AW +E S D +++WD + +N
Sbjct: 230 HTAVVEDVAWHLLHESL----FGSVADDQKLMIWDTRN-------------------NNT 266
Query: 124 DIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKC 181
S +VD AH A + + P E + +GS+D T+ LW +
Sbjct: 267 SKPSHTVD----------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 182 A---QTFVGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QV 221
+F H D + + P I AS D + +W L+ ++
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 222 LMEMVGHTAIV--YSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHP 267
L GHTA + +S + + +I S SED ++W+ V + E P
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 418
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 67/288 (23%)
Query: 8 EYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLD--PSDKRKYHSSKILLG 63
E Q LRGH+ + G+ N+ + ++S D T+ W ++ P + R + I G
Sbjct: 172 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 231
Query: 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
HT+ V +AW +E S D +++WD + +N
Sbjct: 232 HTAVVEDVAWHLLHESL----FGSVADDQKLMIWDTRN-------------------NNT 268
Query: 124 DIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKC 181
S +VD AH A + + P E + +GS+D T+ LW +
Sbjct: 269 SKPSHTVD----------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 182 A---QTFVGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QV 221
+F H D + + P I AS D + +W L+ ++
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 222 LMEMVGHTAIV--YSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHP 267
L GHTA + +S + + +I S SED ++W+ V + E P
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 420
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 67/288 (23%)
Query: 8 EYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLD--PSDKRKYHSSKILLG 63
E Q LRGH+ + G+ N+ + ++S D T+ W ++ P + R + I G
Sbjct: 174 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 233
Query: 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
HT+ V +AW +E S D +++WD + +N
Sbjct: 234 HTAVVEDVAWHLLHESL----FGSVADDQKLMIWDTRN-------------------NNT 270
Query: 124 DIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKC 181
S +VD AH A + + P E + +GS+D T+ LW +
Sbjct: 271 SKPSHTVD----------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 182 A---QTFVGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QV 221
+F H D + + P I AS D + +W L+ ++
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 222 LMEMVGHTAIV--YSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHP 267
L GHTA + +S + + +I S SED ++W+ V + E P
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 422
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 141 KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLS 196
K+V+F EAH I+++ P+ ++SGS D T+KLW + QTF GH V ++
Sbjct: 89 KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 197 VMPG--VGIISASHDCTIRLWALTGQV---LMEMVGHTAIVYSIDSHA---SGLIVSGSE 248
P S D T+++W+L GQ G V +D + +++ S+
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 249 DRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
D KIW + CV ++E H V A F I+ + S DG +IW + KV +L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 305 EL 306
+
Sbjct: 267 NV 268
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 9 YQLSSELRGHEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
+ L GHE V +CV D A+ DRTV+ WSL S + + G
Sbjct: 130 WALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQ 183
Query: 65 TSFVGPLAWIS-PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
V + + P++ + +++ D + +WD + V TL+GH V+
Sbjct: 184 ERGVNYVDYYPLPDKPY----MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 124 --DIVSSSVDSTLKRW 137
I+S S D TLK W
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 141 KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLS 196
K+V+F EAH I+++ P+ ++SGS D T+KLW + QTF GH V ++
Sbjct: 89 KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 197 VMPG--VGIISASHDCTIRLWALTGQVLMEM---VGHTAIVYSIDSHA---SGLIVSGSE 248
P S D T+++W+L GQ G V +D + +++ S+
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 249 DRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
D KIW + CV ++E H V A F I+ + S DG +IW + KV +L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 305 EL 306
+
Sbjct: 267 NV 268
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 9 YQLSSELRGHEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
+ L GHE V +CV D A+ DRTV+ WSL S + + G
Sbjct: 130 WALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQ 183
Query: 65 TSFVGPLAWIS-PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
V + + P++ + +++ D + +WD + V TL+GH V+
Sbjct: 184 ERGVNYVDYYPLPDKPY----MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 124 --DIVSSSVDSTLKRW 137
I+S S D TLK W
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 8 EYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS 66
E L + + GHE++V+G+ D +AT SRD++V W D S + +Y +L H+
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVLQEHSQ 154
Query: 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD--LGSGEKVQTLQGHKLQVTGVTLDNED 124
V + W P+E L S D V +W E V L GH+ V D +
Sbjct: 155 DVKHVIW-HPSEAL----LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE 209
Query: 125 ----IVSSSVDSTLKRWR 138
+ S S DST++ W+
Sbjct: 210 GVFRLCSGSDDSTVRVWK 227
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 148 AHNAPIQTVIRIPSGEIVS-GSSDTTIKLWKGKKCA-QTF--------VGHTDTVRGLSV 197
AH I++V P +++ GS D+T+ +W ++ A +TF GH + V+G++
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 198 M-PGVGIISASHDCTIRLWAL--TGQ------VLMEMVGHTAIVYSIDSHAS-GLIVSGS 247
G + + S D ++ +W +G+ VL E H+ V + H S L+ S S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIWHPSEALLASSS 172
Query: 248 EDRFAKIWK----DGVCVQSIE-HPGCVWDAKFLENGDIVTACS---DGVTRIWTVHSDK 299
D +IWK D CV + H G VW + F + + CS D R+W D
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 300 VADSLE 305
D E
Sbjct: 233 EDDQQE 238
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 141 KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLS 196
K+V+F EAH I+++ P+ ++SGS D T+KLW + QTF GH V ++
Sbjct: 89 KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 197 VMPG--VGIISASHDCTIRLWALTGQVLMEM---VGHTAIVYSIDSHA---SGLIVSGSE 248
P S D T+++W+L GQ G V +D + +++ S+
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 249 DRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
D KIW + CV ++E H V A F I+ + S DG +IW + KV +L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 305 EL 306
+
Sbjct: 267 NV 268
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 9 YQLSSELRGHEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
+ L GHE V +CV D A+ DRTV+ WSL S + + G
Sbjct: 130 WALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQ 183
Query: 65 TSFVGPLAWIS-PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
V + + P++ + +++ D + +WD + V TL+GH V+
Sbjct: 184 ERGVNYVDYYPLPDKPY----MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 124 --DIVSSSVDSTLKRW 137
I+S S D TLK W
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 141 KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLS 196
K+V+F EAH I+++ P+ ++SGS D T+KLW + QTF GH V ++
Sbjct: 89 KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 197 VMPG--VGIISASHDCTIRLWALTGQVLMEM---VGHTAIVYSIDSHA---SGLIVSGSE 248
P S D T+++W+L GQ G V +D + +++ S+
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 249 DRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 304
D KIW + CV ++E H V A F I+ + S DG +IW + KV +L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 305 EL 306
+
Sbjct: 267 NV 268
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 9 YQLSSELRGHEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64
+ L GHE V +CV D A+ DRTV+ WSL S + + G
Sbjct: 130 WALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQ 183
Query: 65 TSFVGPLAWIS-PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123
V + + P++ + +++ D + +WD + V TL+GH V+
Sbjct: 184 ERGVNYVDYYPLPDKPY----MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 124 --DIVSSSVDSTLKRW 137
I+S S D TLK W
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 144 EFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA--QTFVGHTDTVRGLSVMP- 199
E +AH + I + PSGE ++S S D +K+W K + +T +GH TV ++++
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 200 GVGIISASHDCTIRLW 215
G ++SAS D TIRLW
Sbjct: 190 GRNVLSASLDGTIRLW 205
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 80 FPEG-GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKR 136
FP G L+S D + +W + G +TL GH+ VT + + +++S+S+D T++
Sbjct: 145 FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Query: 137 WRKG 140
W G
Sbjct: 205 WECG 208
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 32 GIATSSRDRTVRFWSL-DPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90
+ +SS+D ++ WS+ D S+ R L+GH + V +A I ++S +
Sbjct: 150 ALISSSQDMQLKIWSVKDGSNPR------TLIGHRATVTDIAIIDRGRN-----VLSASL 198
Query: 91 DTMVLVWDLGSGEKVQTLQ 109
D + +W+ G+G + T
Sbjct: 199 DGTIRLWECGTGTTIHTFN 217
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 109 QGHKLQVTGVTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE- 163
Q H ++T + E ++SSS D LK W + G H A + + I G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 164 IVSGSSDTTIKLWKGKKCAQTFVGHT 189
++S S D TI+LW +C HT
Sbjct: 193 VLSASLDGTIRLW---ECGTGTTIHT 215
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 144 EFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA--QTFVGHTDTVRGLSVMP- 199
E +AH + I + PSGE ++S S D +K+W K + +T +GH TV ++++
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 200 GVGIISASHDCTIRLW 215
G ++SAS D TIRLW
Sbjct: 193 GRNVLSASLDGTIRLW 208
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 80 FPEG-GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKR 136
FP G L+S D + +W + G +TL GH+ VT + + +++S+S+D T++
Sbjct: 148 FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Query: 137 WRKG 140
W G
Sbjct: 208 WECG 211
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 32 GIATSSRDRTVRFWSL-DPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90
+ +SS+D ++ WS+ D S+ R L+GH + V +A I ++S +
Sbjct: 153 ALISSSQDMQLKIWSVKDGSNPR------TLIGHRATVTDIAIIDRGRN-----VLSASL 201
Query: 91 DTMVLVWDLGSGEKVQTLQ 109
D + +W+ G+G + T
Sbjct: 202 DGTIRLWECGTGTTIHTFN 220
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 109 QGHKLQVTGVTL--DNEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE- 163
Q H ++T + E ++SSS D LK W + G H A + + I G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 164 IVSGSSDTTIKLWKGKKCAQTFVGHT 189
++S S D TI+LW +C HT
Sbjct: 196 VLSASLDGTIRLW---ECGTGTTIHT 218
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 108/281 (38%), Gaps = 67/281 (23%)
Query: 15 LRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLD--PSDKRKYHSSKILLGHTSFVGP 70
LRGH+ + G+ N+ + ++S D T+ W + P + + + I GHT+ V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSV 130
++W +E S D +++WD S +N S SV
Sbjct: 233 VSWHLLHESL----FGSVADDQKLMIWDTRS-------------------NNTSKPSHSV 269
Query: 131 DSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKCA---QTF 185
D AH A + + P E + +GS+D T+ LW + +F
Sbjct: 270 D----------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 186 VGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QVLMEMVGH 228
H D + + P I AS D + +W L+ ++L GH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 229 TAIV--YSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHP 267
TA + +S + + +I S SED ++W+ + + E P
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDP 414
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIV----------SSSVDS 132
G L+S D V +WD+ +G K + K TG + ED+ S + D
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 133 TLKRW-----RKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKCA--- 182
L W K +AH A + + P E + +GS+D T+ LW +
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 183 QTFVGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QVLMEM 225
TF H D + + P I AS D + +W L+ ++L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 226 VGHTAIV--YSIDSHASGLIVSGSEDRFAKIWK 256
GHTA + +S + + +I S SED +IW+
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+AT S D+TV W L + K K H+ H + + W NE L S G D
Sbjct: 291 LATGSADKTVALWDLR-NLKLKLHT---FESHKDEIFQVHWSPHNETI----LASSGTDR 342
Query: 93 MVLVWDL 99
+ VWDL
Sbjct: 343 RLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIV----------SSSVDS 132
G L+S D V +WD+ +G K + K TG + ED+ S + D
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 133 TLKRW-----RKGKLVEFWEAHNAPIQTVIRIPSGEIV--SGSSDTTIKLWKGKKCA--- 182
L W K +AH A + + P E + +GS+D T+ LW +
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 183 QTFVGHTDTVRGLSVMPGVGIISASH--DCTIRLWALTG---------------QVLMEM 225
TF H D + + P I AS D + +W L+ ++L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 226 VGHTAIV--YSIDSHASGLIVSGSEDRFAKIWK 256
GHTA + +S + + +I S SED +IW+
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 25/123 (20%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92
+AT S D+TV W L + K K H+ H + + W NE L S G D
Sbjct: 291 LATGSADKTVALWDLR-NLKLKLHT---FESHKDEIFQVHWSPHNETI----LASSGTDR 342
Query: 93 MVLVWDLGSGEKVQTLQ--------------GHKLQVTGVTLDNED---IVSSSVDSTLK 135
+ VWDL + Q+ + GH +++ + + + I S S D+ ++
Sbjct: 343 RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Query: 136 RWR 138
W+
Sbjct: 403 IWQ 405
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 56 HSSKILLGHTSFVGPLAWISPNEEFPEG-GLVSGGMDTMVLVWDLGSGE----KVQTLQG 110
H L GH+ V L W P+G L SGG D +V VW GE +QT
Sbjct: 232 HHVATLSGHSQEVCGLRWA------PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 111 HKLQVTGVTLD--NEDIVSS---SVDSTLKRWR--KGKLVEFWEAHNAPIQTVIRIPSGE 163
H+ V V +++++ + D ++ W G + +AH+ + E
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 345
Query: 164 IVSGS--SDTTIKLWKGKKCAQT--FVGHTDTVRGLSVMP-GVGIISASHDCTIRLW 215
++SG + + +WK A+ GHT V L++ P G + SA+ D T+RLW
Sbjct: 346 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 18 HEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73
H+ V+ + C + + + DR +R W++ + + S V + W
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAHSQVCSILW 339
Query: 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVD 131
+E G G +++W + KV L+GH +V +T+ D + S++ D
Sbjct: 340 SPHYKELISG---HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396
Query: 132 STLKRWR 138
TL+ WR
Sbjct: 397 ETLRLWR 403
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 56 HSSKILLGHTSFVGPLAWISPNEEFPEG-GLVSGGMDTMVLVWDLGSGE----KVQTLQG 110
H L GH+ V L W P+G L SGG D +V VW GE +QT
Sbjct: 221 HHVATLSGHSQEVCGLRWA------PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 111 HKLQVTGVTLD--NEDIVSS---SVDSTLKRWR--KGKLVEFWEAHNAPIQTVIRIPSGE 163
H+ V V +++++ + D ++ W G + +AH+ + E
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334
Query: 164 IVSGS--SDTTIKLWKGKKCAQT--FVGHTDTVRGLSVMP-GVGIISASHDCTIRLW 215
++SG + + +WK A+ GHT V L++ P G + SA+ D T+RLW
Sbjct: 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 18 HEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73
H+ V+ + C + + + DR +R W++ + + S V + W
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAHSQVCSILW 328
Query: 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVD 131
+E G G +++W + KV L+GH +V +T+ D + S++ D
Sbjct: 329 SPHYKELISG---HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Query: 132 STLKRWR 138
TL+ WR
Sbjct: 386 ETLRLWR 392
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 80/181 (44%), Gaps = 24/181 (13%)
Query: 17 GHEDDVRGICVC---DNVGIATSSRDRTVRFWSL-DPSDKRKYHSSKILL-GHTSFVGPL 71
GH V I C DNV IA+ S D TV W + D I L GHT VG +
Sbjct: 79 GHTAPVLDIAWCPHNDNV-IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 72 AWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG--HKLQVTGV--TLDNEDIVS 127
AW + L+S G D ++LVWD+G+G V TL H + V + D I +
Sbjct: 138 AWHPTAQNV----LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Query: 128 SSVDSTLK--RWRKGKLV-EFWEAHNA--PIQTVIRIPSGEIV----SGSSDTTIKLWKG 178
S D ++ RKG +V E H P+ V + G+I+ S S+ + LW
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMSERQVALWDT 252
Query: 179 K 179
K
Sbjct: 253 K 253
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 135 KRWRKGKLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWK---------GKKCAQ 183
K R K V H AP+ + P + I SGS D T+ +W+ ++
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 184 TFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSID-S 237
T GHT V ++ P ++SA D I +W + TG ++ + H +YS+D S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 238 HASGLIVSGSEDRFAKI 254
LI + D+ ++
Sbjct: 186 RDGALICTSCRDKRVRV 202
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 186 VGHTDTVRGLSVMPGVG--IISASHDCTIRLWALT--GQVL------MEMVGHTAIVYSI 235
GHT V ++ P I S S DCT+ +W + G VL + + GHT V +
Sbjct: 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 236 DSH--ASGLIVSGSEDRFAKIWKDGVCVQSIE-----HPGCVWDAKFLENGD-IVTACSD 287
H A +++S D +W G + HP ++ + +G I T+C D
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 288 GVTRI 292
R+
Sbjct: 198 KRVRV 202
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 56 HSSKILLGHTSFVGPLAWISPNEEFPEG-GLVSGGMDTMVLVWDLGSGE----KVQTLQG 110
H L GH+ V L W P+G L SGG D +V VW GE +QT
Sbjct: 141 HHVATLSGHSQEVCGLRWA------PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 111 HKLQVTGVTLD--NEDIVSS---SVDSTLKRWR--KGKLVEFWEAHNAPIQTVIRIPSGE 163
H+ V V +++++ + D ++ W G + +AH+ + E
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254
Query: 164 IVSGS--SDTTIKLWKGKKCAQT--FVGHTDTVRGLSVMP-GVGIISASHDCTIRLW 215
++SG + + +WK A+ GHT V L++ P G + SA+ D T+RLW
Sbjct: 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 18 HEDDVRGICVC----DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73
H+ V+ + C + + + DR +R W++ + + S V + W
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAHSQVCSILW 248
Query: 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVD 131
+E G G +++W + KV L+GH +V +T+ D + S++ D
Sbjct: 249 SPHYKELISG---HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305
Query: 132 STLKRWR 138
TL+ WR
Sbjct: 306 ETLRLWR 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 27/213 (12%)
Query: 29 DNVGIATSSRDRTVRFWSL-DPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLV 86
DNV IA+ S D TV W + D I L GHT VG +AW + L+
Sbjct: 94 DNV-IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV----LL 148
Query: 87 SGGMDTMVLVWDLGSGEKVQTLQG--HKLQVTGV--TLDNEDIVSSSVDSTLK--RWRKG 140
S G D ++LVWD+G+G V TL H + V + D I +S D ++ RKG
Sbjct: 149 SAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Query: 141 KLV-EFWEAHNA--PIQTVIRIPSGEIV----SGSSDTTIKLWKGKKCAQTF-VGHTDTV 192
+V E H P+ V + G+I+ S S+ + LW K + + DT
Sbjct: 209 TVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267
Query: 193 RGLSVM---PGVGII--SASHDCTIRLWALTGQ 220
G+ + P I+ D +IR + +T +
Sbjct: 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 135 KRWRKGKLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWK---------GKKCAQ 183
K R K V H AP+ + P + I SGS D T+ +W+ ++
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 184 TFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSID-S 237
T GHT V ++ P ++SA D I +W + TG ++ + H +YS+D S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 238 HASGLIVSGSEDRFAKI 254
LI + D+ ++
Sbjct: 186 RDGALICTSCRDKRVRV 202
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 187 GHTDTVRGLSVMPGVG--IISASHDCTIRLWALT--GQVL------MEMVGHTAIVYSID 236
GHT V ++ P I S S DCT+ +W + G VL + + GHT V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 237 SH--ASGLIVSGSEDRFAKIWKDGVCVQSIE-----HPGCVWDAKFLENGDIV-TACSDG 288
H A +++S D +W G + HP ++ + +G ++ T+C D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 289 VTRI 292
R+
Sbjct: 199 RVRV 202
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 56/186 (30%)
Query: 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-----QGHK 112
S++L GH + ++ P++E L++G D ++WD+ +G+++ GH
Sbjct: 150 SRVLTGHKGYASSCQYV-PDQETR---LITGSGDQTCVLWDVTTGQRISIFGSEFPSGH- 204
Query: 113 LQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTT 172
D++S S++S + + +SGS DTT
Sbjct: 205 ---------TADVLSLSINS--------------------------LNANMFISGSCDTT 229
Query: 173 IKLWKGK---KCAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGH 228
++LW + + +T+ GH + + P G + S D T RL+ + GH
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM-------RTGH 282
Query: 229 TAIVYS 234
VY+
Sbjct: 283 QLQVYN 288
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 34/237 (14%)
Query: 105 VQTLQGHKLQVTGV--TLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIP 160
+TLQGH +V + T + IVS+S D L W + + H + P
Sbjct: 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP 118
Query: 161 SGEIVS-GSSDTTIKLWK---------GKKCAQTFVGHTDTVRGLSVMPG--VGIISASH 208
+G+ V+ G D+ ++ ++ GH +P +I+ S
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 209 DCTIRLWALTGQVLMEMVG------HTAIVYS--IDSHASGLIVSGSEDRFAKIWKDGVC 260
D T LW +T + + G HTA V S I+S + + +SGS D ++W +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 261 VQSIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE 312
+++ H G + KF +G T DG R++ + + +L+ Y E
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVYNRE 290
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 140 GKLVEFWEAHNAPIQTV-IRIPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLS 196
GKL+ H+ PI + + ++S S D T+++W G F GH+ ++ S
Sbjct: 241 GKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 197 VMPGVGIISASHDCTIRLWALTGQVLMEM 225
+ +IS S D ++RLW+L L+ +
Sbjct: 297 WVGDDKVISCSMDGSVRLWSLKQNTLLAL 325
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 81 PEGG-LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNEDIVSSSVDSTLKRW 137
P+G L SG +D ++ ++D+ +G+ + TL+GH + + +T D++ +V++S D +K +
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 138 --RKGKLVEFWEAHNAPIQTVIRIPSG-EIVSGSSDTTIKLWK--GKKCAQTFVGHTDTV 192
+ L H + + V P VS SSD ++K+W + C TF H D V
Sbjct: 234 DVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV 293
Query: 193 RGLSVM-PGVGIISASHDCTIRLW 215
G+ G I+S D I ++
Sbjct: 294 WGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 203 IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 258
+ S S D + +W +L G+ L + GHT ++SID + V+GS D K+W +G
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Query: 259 VCVQSIEHPGCVWDAKFLENGDIVTACSDGVTR 291
CV + + P V +F G+ A D V +
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK 139
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 61 LLGHTSFVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVT 119
L GH PL + N+E G L+ S D+ VW +GE++ TL GH + +
Sbjct: 28 LTGHER---PLTQVKYNKE---GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81
Query: 120 LD--NEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIK 174
+D + V+ S D ++K W G+ V W++ P++ V P G D +K
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMK 139
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 100 GSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWR--KGKLVEFWEAHNAPIQT 155
GS K L GH+ +T V + E + S S DS+ W G+ + + H I +
Sbjct: 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 156 V-IRIPSGEIVSGSSDTTIKLW 176
+ + + V+GS+D +IKLW
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLW 101
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 59/229 (25%)
Query: 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILL----GHTSFVGPLAWISPNEEFPEGGLVSG 88
+AT S DR+V+ + + + +IL+ GH V +AW P L S
Sbjct: 28 LATCSSDRSVKIFDV-------RNGGQILIADLRGHEGPVWQVAWAHP---MYGNILASC 77
Query: 89 GMDTMVLVW--DLGSGEKVQTLQGHKLQVTGVTLDNED----IVSSSVDSTLK------- 135
D V++W + G+ EK GH V V D + S D +
Sbjct: 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137
Query: 136 -RWRKGKLVEFWEAHNAPIQTV-----------IRIPSGE-------IVSGSSDTTIKLW 176
+W K+ AH V I PSG+ SG D IKLW
Sbjct: 138 GQWEVKKINN---AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 194
Query: 177 KGK-----KCAQTFVGHTDTVRGLSVMPGVG-----IISASHDCTIRLW 215
K + K Q H+D VR ++ P +G I S S D + +W
Sbjct: 195 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 161 SGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGV----GIISASHDC 210
S + V+G +D +K+WK AQT+V GH+D VR ++ P V + S S D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 211 TIRLW 215
T +W
Sbjct: 230 TCIIW 234
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 103/296 (34%), Gaps = 76/296 (25%)
Query: 148 AHNAPIQ-TVIRIPSGEIVSGSSDTTIKLWK----GKKCAQTFVGHTDTV-RGLSVMPGV 201
AHN I V+ + + SSD TIK+++ K T GH V R P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 202 GII--SASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS-----HASG--LIVSGSEDRFA 252
G I S S+D + +W ++ H S++S H G L+V+ S+ + +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 253 KI------------------------WKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDG 288
+ W + EH G KF VT +D
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF------VTGGADN 180
Query: 289 VTRIWTVHSDKVADSLE--------------------LEAYASELSQYKLC--------- 319
+ +IW +SD LE L +Y + +SQ + C
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 320 -RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374
K LK E P + + + +G + GDN V + E KW+ GEV
Sbjct: 241 GPWKKTLLKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 161 SGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGV----GIISASHDC 210
S + V+G +D +K+WK AQT+V GH+D VR ++ P V + S S D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 211 TIRLW 215
T +W
Sbjct: 230 TCIIW 234
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 110/299 (36%), Gaps = 82/299 (27%)
Query: 148 AHNAPIQ-TVIRIPSGEIVSGSSDTTIKLWK----GKKCAQTFVGHTDTV-RGLSVMPGV 201
AHN I V+ + + SSD TIK+++ K T GH V R P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 202 GII--SASHDCTIRLW----ALTGQVLMEMVGHTAIVYSID--SHASG--LIVSGSEDRF 251
G I S S+D + +W Q+ + V H+A V S+ H G L+V+ S+ +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 252 AKI------------------------WKDGVCVQSIEHPGCVWDAKFLENGDIVTACSD 287
+ + W + EH G KF VT +D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF------VTGGAD 179
Query: 288 GVTRIWTV---------------HSDKVAD-----SLELEAYASELSQYKLC-------- 319
+ +IW HSD V D ++ L +Y + +SQ + C
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Query: 320 ----RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374
+K + LK E P + + + +G + GDN V + E KW+ GEV
Sbjct: 240 QGPWKKTL--LKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 161 SGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGV----GIISASHDC 210
S + V+G +D +K+WK AQT+V GH+D VR ++ P V + S S D
Sbjct: 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 211 TIRLW 215
T +W
Sbjct: 232 TCIIW 236
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 113/307 (36%), Gaps = 82/307 (26%)
Query: 140 GKLVEFWEAHNAPIQ-TVIRIPSGEIVSGSSDTTIKLWK----GKKCAQTFVGHTDTV-R 193
G +V AHN I V+ + + SSD TIK+++ K T GH V R
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 194 GLSVMPGVGII--SASHDCTIRLW----ALTGQVLMEMVGHTAIVYSID--SHASG--LI 243
P G I S S+D + +W Q+ + V H+A V S+ H G L+
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLL 119
Query: 244 VSGSEDRFAKI------------------------WKDGVCVQSIEHPGCVWDAKFLENG 279
V+ S+ + + + W + EH G KF
Sbjct: 120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF---- 175
Query: 280 DIVTACSDGVTRIWTV---------------HSDKVAD-----SLELEAYASELSQYKLC 319
VT +D + +IW HSD V D ++ L +Y + +SQ + C
Sbjct: 176 --VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 320 ------------RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK 367
+K + LK E P + + + +G + GDN V + E K
Sbjct: 234 IIWTQDNEQGPWKKTL--LKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290
Query: 368 WDKLGEV 374
W+ GEV
Sbjct: 291 WEPAGEV 297
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 161 SGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGV----GIISASHDC 210
S + V+G +D +K+WK AQT+V GH+D VR ++ P V + S S D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 211 TIRLW 215
T +W
Sbjct: 230 TCIIW 234
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 111/299 (37%), Gaps = 82/299 (27%)
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK----GKKCAQTFVGHTDTV-RGLSVMPGV 201
AHN I + G+ + + SSD TIK+++ K T GH V R P
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 202 GII--SASHDCTIRLW----ALTGQVLMEMVGHTAIVYSID--SHASG--LIVSGSEDRF 251
G I S S+D + +W Q+ + V H+A V S+ H G L+V+ S+ +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 252 AKI------------------------WKDGVCVQSIEHPGCVWDAKFLENGDIVTACSD 287
+ + W + EH G KF VT +D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF------VTGGAD 179
Query: 288 GVTRIWTV---------------HSDKVAD-----SLELEAYASELSQYKLC-------- 319
+ +IW HSD V D ++ L +Y + +SQ + C
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239
Query: 320 ----RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374
+K + LK E P + + + +G + GDN V + E KW+ GEV
Sbjct: 240 QGPWKKTL--LKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 161 SGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGVGI----ISASHDC 210
S + V+G +D +K+WK AQT+V GH+D VR ++ P V + S S D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDR 229
Query: 211 TIRLW 215
T +W
Sbjct: 230 TCIIW 234
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 110/299 (36%), Gaps = 82/299 (27%)
Query: 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK----GKKCAQTFVGHTDTV-RGLSVMPGV 201
AHN I + G+ + SSD TIK+++ K T GH V R P
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 202 GII--SASHDCTIRLW----ALTGQVLMEMVGHTAIVYSID--SHASG--LIVSGSEDRF 251
G I S S+D + +W Q+ + V H+A V S+ H G L+V+ S+ +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPXLLVASSDGKV 125
Query: 252 AKI------------------------WKDGVCVQSIEHPGCVWDAKFLENGDIVTACSD 287
+ + W + EH G KF VT +D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF------VTGGAD 179
Query: 288 GVTRIWTV---------------HSDKVAD-----SLELEAYASELSQYKLC-------- 319
+ +IW HSD V D ++ L +Y + +SQ + C
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNE 239
Query: 320 ----RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374
+K + LK E P + + + +G + GDN V + E KW+ GEV
Sbjct: 240 QGPWKKTL--LKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 29 DNVGIATSSRDRTVRFWSLDPSD-KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87
D+ AT D T+R W + S +K+ K LG+ VG +A G ++S
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ-VGVVA-------TGNGRIIS 314
Query: 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWE 147
+D + ++LG E ++T+ GH +T +T++ ++S S D + W + +
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVN--PLISGSYDGRIMEWSSSSM---HQ 369
Query: 148 AHNAPIQTVIRIPSGEIVSGSSDTTIKL 175
H+ I ++ + E S S D T+K+
Sbjct: 370 DHSNLIVSLDNSKAQEYSSISWDDTLKV 397
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKV-QTLQGHKLQVTGVTLDN-EDIVSSSVDSTLK 135
EE E + +G +DT + ++ + K+ + L HK V + + +VSS D+ +K
Sbjct: 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK 608
Query: 136 RW 137
RW
Sbjct: 609 RW 610
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 29 DNVGIATSSRDRTVRFWSLDPSD-KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87
D+ AT D T+R W + S +K+ K LG+ VG +A G ++S
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ-VGVVA-------TGNGRIIS 314
Query: 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRW 137
+D + ++LG E ++T+ GH +T +T++ ++S S D + W
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVN--PLISGSYDGRIXEW 362
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKV-QTLQGHKLQVTGVTLDN-EDIVSSSVDSTLK 135
EE E + +G +DT + ++ + K+ + L HK V + + +VSS D+ +K
Sbjct: 549 EEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK 608
Query: 136 RW 137
RW
Sbjct: 609 RW 610
>pdb|3GAE|A Chain A, Crystal Structure Of Pul
pdb|3GAE|B Chain B, Crystal Structure Of Pul
Length = 253
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 573 PVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKN 632
P DI+R L++K + +D+ + IE+ N + +LT +R + N F N
Sbjct: 73 PAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCFNN 120
Query: 633 SSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 676
+W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 121 ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 171
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 159 IPSGEIVSGSSDTTIKLWKGKKCAQTFVG----HTDTVRGLSVMP-GVGIISASHDCTIR 213
+P +++GS ++ W+ + QT HT V + G + +AS D T +
Sbjct: 52 LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 214 LWALTGQVLMEMVGHTAIVYS---IDSHASGLIVSGSEDRFAKIW 255
+W L+ +++ H A V + I + +++GS D+ K W
Sbjct: 112 MWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMV----GHTAIVY 233
+C + +VGH + + L P ++S S D +RLW + L+ + GH V
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 234 SIDSHASG-LIVSGSEDRFAKIWK 256
S D G I+S D K+W+
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWR 225
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMV----GHTAIVY 233
+C + +VGH + + L P ++S S D +RLW + L+ + GH V
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 234 SIDSHASG-LIVSGSEDRFAKIWK 256
S D G I+S D K+W+
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWR 184
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMV----GHTAIVY 233
+C + +VGH + + L P ++S S D +RLW + L+ + GH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 234 SIDSHASG-LIVSGSEDRFAKIWK 256
S D G I+S D K+W+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMV----GHTAIVY 233
+C + +VGH + + L P ++S S D +RLW + L+ + GH V
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 234 SIDSHASG-LIVSGSEDRFAKIWK 256
S D G I+S D K+W+
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWR 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 180 KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMV----GHTAIVY 233
+C + +VGH + + L P ++S S D +RLW + L+ + GH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 234 SIDSHASG-LIVSGSEDRFAKIWK 256
S D G I+S D K+W+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV 115
H L GH+S V LAW S + L SGG D +V +WD S T H V
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQ-----LASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 116 TGV 118
V
Sbjct: 263 KAV 265
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89
N+ + + +R V W+ D S+ +++V + W S + F GL +G
Sbjct: 103 NLNVVAVALERNVYVWNADSGSV----SALAETDESTYVASVKW-SHDGSFLSVGLGNG- 156
Query: 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEF---- 145
+V ++D+ S K++T+ GH+ +V G N ++SS S ++
Sbjct: 157 ---LVDIYDVESQTKLRTMAGHQARV-GCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT 212
Query: 146 WEAHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGKKCAQTF--VGHTDTVRGLSVMP 199
+ H++ + + G ++ SG +D +++W + F H V+ ++ P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 163 EIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLW---- 215
I+SGS D T+ +++G K TF HT V + P G S D TI L+
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 216 -ALTGQV---LMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWK 256
TG ++ V H+ V+ + G I S S D+ KIW
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 26 CVC---DNVGIATSSRDRTVRFWSLD-PSDKRKYHSSKILLGHT-SFVGPLAWISPNEEF 80
CV DNV +AT S D +V W+++ PSD H I H S V + W++
Sbjct: 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSD----HPIIIKGAHAMSSVNSVIWLN----- 591
Query: 81 PEGGLVSGGMDTMVLVWDL 99
E +VS G D+ + W++
Sbjct: 592 -ETTIVSAGQDSNIKFWNV 609
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 85 LVSGGMDTMVLVWDL--GSGEKVQTLQG-----------HKLQVTGVTLDNED---IVSS 128
++SGG D +++++DL S + T + H+ V V D SS
Sbjct: 59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118
Query: 129 SVDSTLKRW-----RKGKLVEFWEA----HNAPIQTVIRIPSGEIVSGSSDTTIKLW--K 177
S D TLK W + + F E H +P+ T + + G+ ++L K
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL----VAVGTRGPKVQLCDLK 174
Query: 178 GKKCAQTFVGHTDTVRGLSVMPGVGII--SASHDCTIRLW 215
C+ GH + +S P I +AS D ++LW
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 210 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGC 269
C I+ L G VL + H Y H + + SGS I KDG+ HP
Sbjct: 142 CDIKSLNLLGAVLAKQEAHEKGCYEAILHRNNTVTSGSSSNVFGI-KDGILYT---HPAN 197
Query: 270 VWDAKFLENGDIVTACSDGVTR-----IWTVHSDKVADSLELEAYASELS 314
K + D+V AC++ + +T H D L + + SE++
Sbjct: 198 NMILKGITR-DVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 393 DYVFDVDIGDGEPTRKLPYNRSDNPYDAADKW 424
DY FD+D G TR + N DNP+ W
Sbjct: 152 DYRFDLDCGRAAGTRTVLVNLPDNPWPELTDW 183
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 56 HSSKILLG---HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
HSS+ LG H+S+V L++ E L S G D + WD+ + E++ TL H
Sbjct: 279 HSSQASLGEFAHSSWVMSLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 MDIDFKEYQLSSELRGHEDDVRGI-CVCDNVG--IATSSRDRTVRFWSLDP 49
+D D ++LS R H+ + I G IA++S D+TV+ W DP
Sbjct: 40 LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 56 HSSKILLG---HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111
HSS+ LG H+S+V L++ E L S G D + WD+ + E++ TL H
Sbjct: 289 HSSQASLGEFAHSSWVMSLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 MDIDFKEYQLSSELRGHEDDVRGI-CVCDNVG--IATSSRDRTVRFWSLDP 49
+D D ++LS R H+ + I G IA++S D+TV+ W DP
Sbjct: 38 LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 88
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 MDIDFKEYQLSSELRGHEDDVRGI-CVCDNVG--IATSSRDRTVRFWSLDP 49
+D D ++LS R H+ + I G IA++S D+TV+ W DP
Sbjct: 40 LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE--DIVSSSVD 131
ISP+ + S D + VWDL + V+ QGH + + + N+ + + +D
Sbjct: 149 ISPDSKV----CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 132 STLKRW--RKGKLVEFWEAHNAPIQTVIRIPSGE 163
+T++ W R+G+ ++ + + I ++ P+GE
Sbjct: 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,929,071
Number of Sequences: 62578
Number of extensions: 994158
Number of successful extensions: 3400
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2416
Number of HSP's gapped (non-prelim): 300
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)