Query 004329
Match_columns 760
No_of_seqs 974 out of 2815
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 21:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0301 Phospholipase A2-activ 100.0 4E-127 9E-132 995.1 61.3 719 6-757 1-745 (745)
2 PF08324 PUL: PUL domain; Int 100.0 3.9E-46 8.4E-51 383.3 19.4 260 485-753 1-268 (268)
3 KOG0271 Notchless-like WD40 re 100.0 1.6E-44 3.4E-49 352.8 28.5 316 9-362 105-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.3E-47 340.0 25.5 289 2-294 140-479 (480)
5 KOG0286 G-protein beta subunit 100.0 5.5E-36 1.2E-40 284.0 33.2 276 9-294 45-343 (343)
6 KOG0279 G protein beta subunit 100.0 7.8E-36 1.7E-40 281.5 32.4 284 8-296 4-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-37 9.7E-42 304.9 21.5 273 13-294 169-458 (459)
8 KOG0285 Pleiotropic regulator 100.0 6.3E-35 1.4E-39 283.3 25.7 284 3-298 136-441 (460)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-35 3.7E-40 293.7 18.9 245 2-256 200-458 (459)
10 KOG0645 WD40 repeat protein [G 100.0 5E-33 1.1E-37 261.4 32.2 277 9-296 4-311 (312)
11 KOG0279 G protein beta subunit 100.0 1.3E-32 2.9E-37 259.7 30.7 287 56-363 6-312 (315)
12 KOG0273 Beta-transducin family 100.0 7.4E-33 1.6E-37 278.3 30.6 267 19-296 235-523 (524)
13 KOG0273 Beta-transducin family 100.0 4.4E-33 9.5E-38 279.9 28.0 285 13-305 173-491 (524)
14 KOG0319 WD40-repeat-containing 100.0 2.2E-33 4.9E-38 296.2 27.2 344 2-353 87-599 (775)
15 PF09070 PFU: PFU (PLAA family 100.0 1.4E-35 2.9E-40 249.9 5.4 111 339-451 2-115 (116)
16 KOG0319 WD40-repeat-containing 100.0 3.4E-32 7.4E-37 287.3 29.0 332 1-362 129-617 (775)
17 KOG0295 WD40 repeat-containing 100.0 1.7E-32 3.8E-37 267.5 24.1 279 7-295 96-405 (406)
18 KOG0291 WD40-repeat-containing 100.0 1.1E-30 2.4E-35 275.9 38.2 293 5-305 131-559 (893)
19 KOG0315 G-protein beta subunit 100.0 2.5E-31 5.5E-36 246.7 28.2 260 33-303 13-295 (311)
20 KOG0286 G-protein beta subunit 100.0 3.5E-31 7.6E-36 251.4 27.7 250 1-256 79-343 (343)
21 KOG0281 Beta-TrCP (transducin 100.0 4.4E-33 9.5E-38 269.2 13.5 266 18-300 196-481 (499)
22 KOG0265 U5 snRNP-specific prot 100.0 7.3E-31 1.6E-35 250.3 27.5 275 11-294 39-336 (338)
23 KOG0284 Polyadenylation factor 100.0 1.4E-32 3.1E-37 271.6 16.0 268 18-296 95-380 (464)
24 KOG0318 WD40 repeat stress pro 100.0 7.7E-30 1.7E-34 259.7 36.0 285 3-297 174-561 (603)
25 KOG0263 Transcription initiati 100.0 6.4E-31 1.4E-35 281.0 27.7 239 13-256 372-647 (707)
26 KOG0276 Vesicle coat complex C 100.0 1.8E-30 4E-35 268.7 29.2 273 10-292 4-295 (794)
27 KOG0276 Vesicle coat complex C 100.0 1E-29 2.3E-34 263.1 32.6 351 2-363 38-453 (794)
28 KOG0291 WD40-repeat-containing 100.0 2.1E-29 4.6E-34 266.2 32.9 293 3-305 291-621 (893)
29 cd00200 WD40 WD40 domain, foun 100.0 6.4E-29 1.4E-33 257.4 36.3 273 12-294 2-289 (289)
30 KOG0316 Conserved WD40 repeat- 100.0 7.8E-30 1.7E-34 234.9 25.7 272 11-294 9-297 (307)
31 KOG0292 Vesicle coat complex C 100.0 1.9E-29 4.2E-34 270.1 32.1 281 14-304 4-329 (1202)
32 PLN00181 protein SPA1-RELATED; 100.0 1.6E-28 3.4E-33 291.1 42.2 286 4-295 463-792 (793)
33 KOG0293 WD40 repeat-containing 100.0 7.4E-30 1.6E-34 252.4 23.3 283 9-298 214-515 (519)
34 KOG0295 WD40 repeat-containing 100.0 3.5E-30 7.6E-35 251.5 19.7 247 1-256 132-404 (406)
35 KOG0296 Angio-associated migra 100.0 1.5E-28 3.2E-33 240.4 30.0 311 12-332 57-398 (399)
36 KOG0315 G-protein beta subunit 100.0 2.6E-28 5.5E-33 226.8 28.6 265 1-275 22-308 (311)
37 KOG0285 Pleiotropic regulator 100.0 5.2E-29 1.1E-33 242.3 24.4 245 54-304 140-397 (460)
38 KOG0263 Transcription initiati 100.0 2.2E-29 4.7E-34 269.4 23.9 236 59-299 372-652 (707)
39 KOG0266 WD40 repeat-containing 100.0 2.6E-28 5.7E-33 269.0 32.5 281 8-296 147-454 (456)
40 KOG0301 Phospholipase A2-activ 100.0 3.1E-29 6.7E-34 263.3 23.5 235 8-256 46-286 (745)
41 KOG0313 Microtubule binding pr 100.0 2.2E-28 4.7E-33 240.2 26.6 270 17-296 103-418 (423)
42 KOG0281 Beta-TrCP (transducin 100.0 2E-30 4.2E-35 250.9 11.7 239 1-256 219-475 (499)
43 KOG0306 WD40-repeat-containing 100.0 2.6E-28 5.6E-33 258.0 28.4 280 13-304 367-672 (888)
44 KOG0282 mRNA splicing factor [ 100.0 1.1E-29 2.5E-34 256.6 17.2 276 9-294 204-503 (503)
45 KOG0318 WD40 repeat stress pro 100.0 6E-27 1.3E-31 238.7 36.0 288 3-298 43-394 (603)
46 KOG0645 WD40 repeat protein [G 100.0 5.8E-27 1.2E-31 220.7 30.9 283 56-363 5-310 (312)
47 KOG0284 Polyadenylation factor 100.0 1.1E-29 2.4E-34 251.3 13.0 244 4-258 123-380 (464)
48 KOG0274 Cdc4 and related F-box 100.0 1.6E-27 3.5E-32 261.5 30.7 279 13-304 201-490 (537)
49 KOG0278 Serine/threonine kinas 100.0 1.7E-28 3.7E-33 227.9 17.9 280 10-301 5-302 (334)
50 KOG0306 WD40-repeat-containing 100.0 1.3E-26 2.7E-31 245.3 34.1 352 2-365 90-623 (888)
51 KOG0292 Vesicle coat complex C 100.0 3.2E-27 7E-32 253.2 29.2 280 1-301 33-353 (1202)
52 KOG0275 Conserved WD40 repeat- 100.0 2.4E-28 5.3E-33 234.2 16.9 279 11-294 204-507 (508)
53 KOG0300 WD40 repeat-containing 100.0 2.2E-27 4.8E-32 227.2 21.3 280 8-298 137-478 (481)
54 KOG0268 Sof1-like rRNA process 100.0 1.6E-27 3.4E-32 232.7 15.7 279 10-305 57-354 (433)
55 KOG0266 WD40 repeat-containing 99.9 2.9E-26 6.4E-31 252.8 27.1 246 2-256 184-452 (456)
56 KOG0643 Translation initiation 99.9 1.5E-25 3.2E-30 210.6 27.4 274 14-298 5-319 (327)
57 KOG0299 U3 snoRNP-associated p 99.9 6.4E-26 1.4E-30 228.3 26.5 270 12-286 135-445 (479)
58 KOG0277 Peroxisomal targeting 99.9 1.2E-26 2.7E-31 216.3 19.0 232 18-257 59-308 (311)
59 KOG0313 Microtubule binding pr 99.9 5.4E-26 1.2E-30 223.4 24.2 247 2-256 128-416 (423)
60 KOG0277 Peroxisomal targeting 99.9 4E-26 8.6E-31 213.0 21.8 266 23-295 12-308 (311)
61 KOG0274 Cdc4 and related F-box 99.9 6.7E-26 1.5E-30 248.8 27.2 261 1-275 230-503 (537)
62 KOG1407 WD40 repeat protein [F 99.9 2.6E-25 5.6E-30 208.4 26.1 274 6-287 8-293 (313)
63 KOG0265 U5 snRNP-specific prot 99.9 8E-26 1.7E-30 216.0 22.7 244 1-254 71-334 (338)
64 cd00200 WD40 WD40 domain, foun 99.9 5E-24 1.1E-28 220.6 35.5 241 59-304 3-257 (289)
65 KOG0296 Angio-associated migra 99.9 7.3E-25 1.6E-29 214.6 26.0 285 2-296 89-398 (399)
66 KOG0316 Conserved WD40 repeat- 99.9 3.3E-25 7.2E-30 204.5 21.9 244 2-256 42-297 (307)
67 KOG0640 mRNA cleavage stimulat 99.9 2.5E-25 5.5E-30 212.8 21.4 279 13-296 106-426 (430)
68 KOG0288 WD40 repeat protein Ti 99.9 5.7E-26 1.2E-30 225.5 16.5 275 10-294 166-459 (459)
69 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-23 4.1E-28 202.0 33.2 280 7-299 2-306 (311)
70 KOG0283 WD40 repeat-containing 99.9 4.3E-25 9.4E-30 238.6 23.7 291 6-299 253-579 (712)
71 KOG0310 Conserved WD40 repeat- 99.9 1E-24 2.2E-29 221.4 24.6 264 19-293 26-306 (487)
72 KOG0641 WD40 repeat protein [G 99.9 2.5E-23 5.3E-28 190.7 31.1 284 7-296 21-349 (350)
73 KOG0647 mRNA export protein (c 99.9 1.8E-24 3.9E-29 206.9 24.5 253 17-280 25-306 (347)
74 KOG0282 mRNA splicing factor [ 99.9 8.9E-26 1.9E-30 228.6 16.1 278 56-362 205-503 (503)
75 KOG0772 Uncharacterized conser 99.9 2.8E-24 6.1E-29 218.6 25.5 281 9-295 157-486 (641)
76 KOG0293 WD40 repeat-containing 99.9 6.2E-25 1.4E-29 217.7 20.3 242 4-256 255-511 (519)
77 KOG0305 Anaphase promoting com 99.9 5.6E-24 1.2E-28 224.8 27.4 263 25-298 183-463 (484)
78 KOG0308 Conserved WD40 repeat- 99.9 8.4E-25 1.8E-29 228.4 19.6 380 18-427 20-450 (735)
79 PLN00181 protein SPA1-RELATED; 99.9 2.4E-23 5.3E-28 246.8 34.4 229 18-256 531-791 (793)
80 KOG1036 Mitotic spindle checkp 99.9 3.4E-23 7.3E-28 199.2 26.4 255 18-286 12-294 (323)
81 KOG2106 Uncharacterized conser 99.9 6.4E-22 1.4E-26 201.0 36.9 291 2-301 183-526 (626)
82 KOG0278 Serine/threonine kinas 99.9 8.2E-25 1.8E-29 203.5 14.3 239 5-256 45-295 (334)
83 KOG1408 WD40 repeat protein [F 99.9 4.2E-23 9.1E-28 216.9 28.3 358 2-365 61-714 (1080)
84 KOG1539 WD repeat protein [Gen 99.9 1.4E-22 3.1E-27 217.4 31.7 329 2-365 185-649 (910)
85 KOG0300 WD40 repeat-containing 99.9 7E-24 1.5E-28 203.3 19.4 248 3-256 174-474 (481)
86 KOG0641 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 185.6 27.1 245 11-256 81-347 (350)
87 KOG0268 Sof1-like rRNA process 99.9 1.8E-24 3.9E-29 211.4 15.5 283 58-375 59-354 (433)
88 KOG1408 WD40 repeat protein [F 99.9 1.4E-23 3E-28 220.5 23.1 296 1-301 348-718 (1080)
89 KOG2096 WD40 repeat protein [G 99.9 4.1E-23 8.8E-28 198.6 24.4 283 13-300 80-406 (420)
90 KOG0973 Histone transcription 99.9 6.7E-23 1.5E-27 227.1 27.3 284 15-303 8-362 (942)
91 KOG0294 WD40 repeat-containing 99.9 2.2E-22 4.8E-27 193.7 26.2 259 33-299 4-284 (362)
92 KOG0264 Nucleosome remodeling 99.9 5E-23 1.1E-27 207.9 21.8 236 17-256 122-402 (422)
93 KOG1332 Vesicle coat complex C 99.9 1.5E-23 3.3E-28 194.7 16.3 233 60-297 6-287 (299)
94 KOG0275 Conserved WD40 repeat- 99.9 1.1E-23 2.5E-28 202.3 15.7 241 62-307 210-478 (508)
95 KOG0294 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 191.0 26.1 236 9-256 33-279 (362)
96 KOG0283 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 219.8 23.6 277 59-365 260-577 (712)
97 KOG0310 Conserved WD40 repeat- 99.9 1E-22 2.2E-27 206.9 21.5 242 5-255 54-306 (487)
98 KOG0305 Anaphase promoting com 99.9 2E-22 4.3E-27 213.1 24.3 244 1-256 199-459 (484)
99 KOG0264 Nucleosome remodeling 99.9 1.4E-22 3E-27 204.7 21.9 234 60-297 119-405 (422)
100 PTZ00421 coronin; Provisional 99.9 3E-21 6.6E-26 212.1 34.5 257 18-279 19-315 (493)
101 KOG0289 mRNA splicing factor [ 99.9 5.1E-22 1.1E-26 198.5 25.4 266 20-295 220-505 (506)
102 KOG1332 Vesicle coat complex C 99.9 7.5E-23 1.6E-27 190.2 18.0 236 16-256 8-284 (299)
103 KOG0308 Conserved WD40 repeat- 99.9 4.3E-23 9.3E-28 215.7 17.3 295 11-313 65-410 (735)
104 PTZ00421 coronin; Provisional 99.9 3.1E-21 6.7E-26 212.0 32.9 224 14-241 70-315 (493)
105 PTZ00420 coronin; Provisional 99.9 2.8E-21 6.1E-26 213.1 32.0 172 3-179 58-248 (568)
106 PTZ00420 coronin; Provisional 99.9 6.9E-21 1.5E-25 210.0 34.3 235 35-279 49-318 (568)
107 KOG1446 Histone H3 (Lys4) meth 99.9 8.9E-21 1.9E-25 183.6 30.6 243 56-305 5-271 (311)
108 KOG2106 Uncharacterized conser 99.9 1.6E-20 3.5E-25 191.0 33.3 342 12-362 97-519 (626)
109 KOG2445 Nuclear pore complex c 99.9 3.7E-21 8.1E-26 184.7 25.7 257 16-277 10-342 (361)
110 KOG1063 RNA polymerase II elon 99.9 1.3E-21 2.9E-26 206.0 24.8 288 7-299 179-651 (764)
111 KOG2048 WD40 repeat protein [G 99.9 2.3E-20 5.1E-25 196.6 33.8 269 18-297 24-320 (691)
112 KOG0299 U3 snoRNP-associated p 99.9 1.5E-21 3.3E-26 196.9 23.0 236 58-298 135-412 (479)
113 KOG0973 Histone transcription 99.9 2.3E-21 5.1E-26 215.0 25.5 243 9-256 59-353 (942)
114 KOG0288 WD40 repeat protein Ti 99.9 3.5E-22 7.7E-27 198.6 17.0 243 2-256 200-459 (459)
115 KOG0639 Transducin-like enhanc 99.9 8.1E-22 1.7E-26 199.9 19.6 273 17-295 417-703 (705)
116 KOG4328 WD40 protein [Function 99.9 3.8E-21 8.2E-26 193.8 23.4 290 3-297 170-496 (498)
117 KOG0646 WD40 repeat protein [G 99.9 1.3E-21 2.9E-26 197.8 19.9 268 2-279 21-331 (476)
118 KOG0643 Translation initiation 99.9 3.5E-20 7.5E-25 174.7 27.4 221 60-286 5-251 (327)
119 KOG0772 Uncharacterized conser 99.9 3E-21 6.5E-26 196.7 21.1 243 57-304 159-453 (641)
120 KOG1036 Mitotic spindle checkp 99.9 1E-20 2.2E-25 182.2 22.8 233 3-248 39-294 (323)
121 KOG1407 WD40 repeat protein [F 99.9 1.4E-20 3.1E-25 176.7 23.1 246 59-310 14-275 (313)
122 KOG0640 mRNA cleavage stimulat 99.9 6.7E-21 1.5E-25 182.6 21.0 239 56-299 103-386 (430)
123 KOG0289 mRNA splicing factor [ 99.9 1E-20 2.2E-25 189.3 22.8 245 2-256 244-504 (506)
124 KOG1539 WD repeat protein [Gen 99.9 2E-19 4.3E-24 193.4 33.7 354 2-367 137-609 (910)
125 KOG2048 WD40 repeat protein [G 99.9 7.1E-19 1.5E-23 185.5 36.3 353 3-367 51-508 (691)
126 KOG0647 mRNA export protein (c 99.9 3.6E-20 7.8E-25 177.6 22.7 227 13-249 66-315 (347)
127 KOG0269 WD40 repeat-containing 99.9 3.9E-21 8.6E-26 204.9 17.9 271 21-297 41-341 (839)
128 KOG0646 WD40 repeat protein [G 99.9 4.8E-20 1E-24 186.5 22.6 259 36-305 13-316 (476)
129 KOG4283 Transcription-coupled 99.8 3.6E-19 7.9E-24 169.8 24.8 276 16-296 40-365 (397)
130 KOG0650 WD40 repeat nucleolar 99.8 1.4E-19 3E-24 187.7 23.5 274 11-294 392-733 (733)
131 KOG2445 Nuclear pore complex c 99.8 1E-18 2.3E-23 168.0 24.7 231 61-297 9-319 (361)
132 KOG0269 WD40 repeat-containing 99.8 2.7E-20 5.8E-25 198.6 15.2 228 22-255 90-337 (839)
133 KOG0321 WD40 repeat-containing 99.8 2.8E-19 6E-24 187.0 22.0 276 18-298 46-393 (720)
134 KOG0267 Microtubule severing p 99.8 7.2E-21 1.6E-25 201.3 10.0 230 13-253 22-262 (825)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.3E-18 2E-22 176.3 33.6 261 33-306 4-289 (300)
136 KOG4378 Nuclear protein COP1 [ 99.8 2E-19 4.3E-24 182.5 19.7 273 2-282 15-308 (673)
137 KOG1274 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 188.3 28.3 253 16-280 10-283 (933)
138 KOG0267 Microtubule severing p 99.8 8.1E-21 1.8E-25 201.0 9.6 243 33-291 7-262 (825)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.1E-17 4.6E-22 173.6 31.8 264 1-277 13-300 (300)
140 KOG1063 RNA polymerase II elon 99.8 3.4E-18 7.3E-23 180.6 24.9 286 1-296 36-391 (764)
141 KOG0302 Ribosome Assembly prot 99.8 1.8E-18 3.8E-23 170.6 20.7 239 13-256 145-436 (440)
142 KOG2096 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 163.3 23.8 259 42-305 63-369 (420)
143 KOG0270 WD40 repeat-containing 99.8 3E-18 6.5E-23 172.6 22.3 236 66-301 174-454 (463)
144 KOG4328 WD40 protein [Function 99.8 6.7E-18 1.4E-22 170.6 24.8 245 57-304 178-458 (498)
145 KOG1274 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 184.1 26.4 231 62-297 10-263 (933)
146 KOG0270 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 175.2 18.9 219 33-256 195-447 (463)
147 KOG1273 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 160.0 25.1 274 11-297 17-323 (405)
148 KOG1538 Uncharacterized conser 99.8 6.1E-18 1.3E-22 177.0 22.6 264 21-298 14-295 (1081)
149 KOG2055 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 168.7 23.9 270 19-296 213-512 (514)
150 KOG0302 Ribosome Assembly prot 99.8 1.1E-17 2.3E-22 165.1 21.4 230 60-292 146-435 (440)
151 KOG0307 Vesicle coat complex C 99.8 8.6E-19 1.9E-23 195.5 15.0 274 24-299 11-330 (1049)
152 KOG1034 Transcriptional repres 99.8 3.7E-17 8.1E-22 158.7 23.5 285 7-296 25-383 (385)
153 KOG1445 Tumor-specific antigen 99.8 4.8E-17 1E-21 169.5 25.5 125 11-140 71-200 (1012)
154 KOG0321 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 175.0 19.5 236 13-256 94-389 (720)
155 KOG0639 Transducin-like enhanc 99.8 6.1E-18 1.3E-22 171.9 16.0 246 2-256 443-702 (705)
156 KOG0644 Uncharacterized conser 99.8 5.5E-19 1.2E-23 189.4 7.9 279 8-302 179-474 (1113)
157 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-17 3.8E-22 171.8 16.8 252 8-264 283-569 (577)
158 KOG4378 Nuclear protein COP1 [ 99.7 7.6E-17 1.6E-21 163.9 18.9 259 33-299 5-283 (673)
159 KOG4283 Transcription-coupled 99.7 1.5E-16 3.2E-21 152.1 19.1 231 17-256 99-363 (397)
160 KOG0322 G-protein beta subunit 99.7 6E-17 1.3E-21 152.7 16.0 272 10-295 5-322 (323)
161 KOG0307 Vesicle coat complex C 99.7 2.4E-17 5.3E-22 184.1 15.1 234 19-256 64-325 (1049)
162 KOG1007 WD repeat protein TSSC 99.7 3.1E-16 6.7E-21 149.7 18.9 240 11-256 55-359 (370)
163 KOG1273 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 147.1 21.6 300 68-405 26-359 (405)
164 KOG1524 WD40 repeat-containing 99.7 1.9E-15 4.2E-20 155.2 22.5 263 17-294 12-284 (737)
165 KOG1587 Cytoplasmic dynein int 99.7 2.7E-15 5.8E-20 163.9 25.2 250 39-298 221-518 (555)
166 COG2319 FOG: WD40 repeat [Gene 99.7 9.9E-14 2.2E-18 151.9 37.9 285 2-297 137-443 (466)
167 KOG2055 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 154.5 20.4 246 2-256 240-510 (514)
168 KOG0290 Conserved WD40 repeat- 99.7 4.4E-15 9.5E-20 142.0 22.9 269 20-292 45-361 (364)
169 KOG2919 Guanine nucleotide-bin 99.7 3.5E-15 7.6E-20 144.7 22.3 268 21-288 51-361 (406)
170 COG2319 FOG: WD40 repeat [Gene 99.7 4.1E-13 8.8E-18 147.1 41.4 277 14-299 60-362 (466)
171 KOG1009 Chromatin assembly com 99.7 9.3E-15 2E-19 146.1 25.0 278 19-301 13-377 (434)
172 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 148.5 18.6 256 33-296 43-346 (376)
173 KOG1517 Guanine nucleotide bin 99.7 5.8E-15 1.3E-19 162.7 24.8 271 20-299 1065-1384(1387)
174 KOG1538 Uncharacterized conser 99.7 1.5E-15 3.2E-20 159.4 19.2 259 67-331 14-292 (1081)
175 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-16 8.3E-21 162.0 14.4 241 55-301 284-566 (577)
176 KOG1517 Guanine nucleotide bin 99.7 4.4E-15 9.6E-20 163.6 21.8 250 1-256 1088-1379(1387)
177 KOG1034 Transcriptional repres 99.7 3.9E-15 8.5E-20 144.8 18.3 230 17-256 87-381 (385)
178 KOG4227 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 143.8 21.4 279 13-296 50-387 (609)
179 KOG0303 Actin-binding protein 99.7 9.2E-15 2E-19 145.3 20.3 160 15-179 77-249 (472)
180 KOG0649 WD40 repeat protein [G 99.6 2.6E-14 5.7E-19 133.4 21.0 221 67-296 12-274 (325)
181 KOG0650 WD40 repeat nucleolar 99.6 9.3E-15 2E-19 152.3 20.0 235 55-295 390-679 (733)
182 KOG1587 Cytoplasmic dynein int 99.6 3.1E-14 6.7E-19 155.7 24.1 251 2-256 225-514 (555)
183 KOG1007 WD repeat protein TSSC 99.6 8.8E-15 1.9E-19 139.8 16.3 205 9-218 112-361 (370)
184 KOG1188 WD40 repeat protein [G 99.6 7.6E-15 1.6E-19 143.7 15.1 246 2-256 53-344 (376)
185 KOG0649 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 128.4 22.3 230 21-261 12-278 (325)
186 KOG1240 Protein kinase contain 99.6 2.1E-13 4.5E-18 153.1 25.3 247 4-256 1034-1332(1431)
187 KOG1334 WD40 repeat protein [G 99.6 9E-15 1.9E-19 149.2 12.5 288 7-301 130-471 (559)
188 KOG1524 WD40 repeat-containing 99.6 7.1E-14 1.5E-18 143.8 18.8 222 63-291 12-250 (737)
189 KOG1523 Actin-related protein 99.6 2.8E-13 6.2E-18 131.7 21.9 230 62-296 7-278 (361)
190 KOG0644 Uncharacterized conser 99.6 8E-15 1.7E-19 157.9 11.9 269 58-365 183-469 (1113)
191 KOG0303 Actin-binding protein 99.6 1.2E-13 2.5E-18 137.6 18.9 192 107-299 76-297 (472)
192 KOG1523 Actin-related protein 99.6 2.8E-13 6E-18 131.8 21.0 225 18-249 9-269 (361)
193 KOG0290 Conserved WD40 repeat- 99.6 1.2E-13 2.5E-18 132.4 18.0 224 17-248 94-356 (364)
194 KOG1963 WD40 repeat protein [G 99.6 2.4E-12 5.2E-17 141.0 29.5 275 17-298 203-540 (792)
195 KOG1963 WD40 repeat protein [G 99.5 4E-12 8.7E-17 139.2 27.0 283 15-305 12-384 (792)
196 KOG1009 Chromatin assembly com 99.5 1.4E-12 3.1E-17 130.6 21.1 244 8-256 54-370 (434)
197 KOG0322 G-protein beta subunit 99.5 4.5E-13 9.8E-18 126.8 15.3 247 2-256 38-321 (323)
198 PRK11028 6-phosphogluconolacto 99.5 3.6E-11 7.9E-16 128.2 32.2 254 33-296 5-304 (330)
199 KOG2110 Uncharacterized conser 99.5 6E-11 1.3E-15 117.9 30.3 224 18-256 4-246 (391)
200 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.7E-18 142.4 11.8 229 57-301 42-308 (758)
201 KOG1310 WD40 repeat protein [G 99.5 3.5E-13 7.5E-18 139.2 13.9 170 10-186 41-238 (758)
202 KOG2919 Guanine nucleotide-bin 99.5 2.9E-12 6.2E-17 124.7 18.5 223 19-250 104-362 (406)
203 KOG4227 WD40 repeat protein [G 99.5 6.3E-12 1.4E-16 124.8 20.9 328 57-428 48-425 (609)
204 KOG1445 Tumor-specific antigen 99.4 4.1E-12 8.9E-17 133.2 18.9 216 36-256 599-842 (1012)
205 PRK01742 tolB translocation pr 99.4 1.5E-11 3.3E-16 135.5 21.0 222 1-240 186-426 (429)
206 KOG1240 Protein kinase contain 99.4 7.2E-11 1.6E-15 133.2 24.4 240 57-300 1040-1338(1431)
207 KOG1272 WD40-repeat-containing 99.4 2.3E-12 4.9E-17 131.1 11.1 221 67-295 131-361 (545)
208 PRK01742 tolB translocation pr 99.4 4.6E-11 9.9E-16 131.7 21.8 222 39-278 183-426 (429)
209 KOG1334 WD40 repeat protein [G 99.3 5.5E-12 1.2E-16 129.1 11.8 251 1-257 166-465 (559)
210 KOG3881 Uncharacterized conser 99.3 9.4E-11 2E-15 117.4 20.0 242 63-308 53-332 (412)
211 KOG1272 WD40-repeat-containing 99.3 2.3E-12 5E-17 131.0 8.4 250 21-286 131-398 (545)
212 KOG2111 Uncharacterized conser 99.3 4.2E-09 9.2E-14 103.0 30.3 222 21-256 7-254 (346)
213 KOG0771 Prolactin regulatory e 99.3 1.8E-11 3.9E-16 123.8 14.4 185 23-218 148-354 (398)
214 PF02239 Cytochrom_D1: Cytochr 99.3 5.5E-09 1.2E-13 111.7 34.2 291 2-305 19-356 (369)
215 KOG3881 Uncharacterized conser 99.3 9.7E-11 2.1E-15 117.3 18.8 253 18-278 54-342 (412)
216 PRK11028 6-phosphogluconolacto 99.3 1.4E-09 3E-14 116.1 29.1 245 2-256 15-302 (330)
217 KOG1409 Uncharacterized conser 99.3 4.4E-11 9.4E-16 117.7 15.5 281 8-297 13-395 (404)
218 KOG0771 Prolactin regulatory e 99.3 3.2E-10 7E-15 114.9 21.7 182 116-298 148-356 (398)
219 KOG2394 WD40 protein DMR-N9 [G 99.3 1.3E-10 2.9E-15 120.4 19.0 182 84-277 187-384 (636)
220 KOG2321 WD40 repeat protein [G 99.3 3.6E-10 7.9E-15 118.1 22.1 267 17-298 49-345 (703)
221 KOG4497 Uncharacterized conser 99.3 1.9E-10 4.1E-15 112.4 18.3 272 1-290 73-426 (447)
222 KOG2111 Uncharacterized conser 99.3 7.5E-09 1.6E-13 101.3 28.0 223 68-299 8-259 (346)
223 PRK03629 tolB translocation pr 99.3 1.1E-09 2.3E-14 120.6 24.8 226 2-240 182-428 (429)
224 KOG2139 WD40 repeat protein [G 99.3 3E-09 6.5E-14 105.5 25.0 265 19-296 98-431 (445)
225 KOG4497 Uncharacterized conser 99.2 2.2E-09 4.7E-14 105.1 22.7 182 24-216 13-238 (447)
226 KOG0974 WD-repeat protein WDR6 99.2 2.6E-10 5.5E-15 127.4 18.5 268 20-300 8-292 (967)
227 KOG2110 Uncharacterized conser 99.2 7.9E-09 1.7E-13 103.1 26.5 243 40-298 68-332 (391)
228 KOG2394 WD40 protein DMR-N9 [G 99.2 3.9E-10 8.5E-15 117.0 16.9 256 29-302 183-458 (636)
229 PRK04922 tolB translocation pr 99.2 1.6E-09 3.5E-14 119.7 22.9 225 2-239 187-432 (433)
230 KOG2321 WD40 repeat protein [G 99.2 2.6E-09 5.7E-14 111.8 22.0 238 63-305 49-311 (703)
231 PRK05137 tolB translocation pr 99.2 3.6E-09 7.7E-14 117.1 24.7 225 1-239 184-432 (435)
232 KOG4190 Uncharacterized conser 99.2 8.5E-11 1.8E-15 121.6 10.5 272 12-292 728-1032(1034)
233 KOG1354 Serine/threonine prote 99.2 2.9E-09 6.3E-14 104.9 19.2 270 19-300 25-363 (433)
234 PF08662 eIF2A: Eukaryotic tra 99.2 2.4E-09 5.2E-14 103.9 18.8 116 188-307 58-189 (194)
235 TIGR03300 assembly_YfgL outer 99.2 3.5E-08 7.6E-13 107.3 29.9 277 2-293 78-376 (377)
236 PRK02889 tolB translocation pr 99.1 3.2E-09 6.9E-14 117.0 21.4 225 2-239 179-424 (427)
237 KOG2315 Predicted translation 99.1 3.4E-08 7.4E-13 103.7 26.5 277 19-305 34-353 (566)
238 PRK05137 tolB translocation pr 99.1 2.9E-08 6.2E-13 109.9 27.5 207 92-299 182-415 (435)
239 PRK03629 tolB translocation pr 99.1 2.7E-08 5.8E-13 109.6 26.7 224 41-277 180-427 (429)
240 KOG2041 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 107.8 21.0 274 18-296 13-337 (1189)
241 PF02239 Cytochrom_D1: Cytochr 99.0 6.4E-07 1.4E-11 95.8 33.3 299 33-367 9-350 (369)
242 KOG0974 WD-repeat protein WDR6 99.0 6.5E-09 1.4E-13 116.4 17.3 172 84-256 101-286 (967)
243 PRK02889 tolB translocation pr 99.0 8.7E-08 1.9E-12 105.6 24.5 225 40-277 176-424 (427)
244 PRK04922 tolB translocation pr 99.0 7.7E-08 1.7E-12 106.4 24.1 205 92-297 184-412 (433)
245 KOG1064 RAVE (regulator of V-A 99.0 3.6E-09 7.8E-14 123.6 13.6 215 60-289 2203-2439(2439)
246 TIGR02800 propeller_TolB tol-p 99.0 6.5E-08 1.4E-12 106.9 23.4 222 2-235 173-414 (417)
247 KOG2315 Predicted translation 99.0 1.6E-07 3.4E-12 98.9 24.1 264 21-299 75-393 (566)
248 KOG0280 Uncharacterized conser 99.0 6E-08 1.3E-12 94.0 18.5 231 19-256 69-331 (339)
249 TIGR03300 assembly_YfgL outer 99.0 2.3E-06 5E-11 93.1 33.6 257 30-304 65-346 (377)
250 PF08662 eIF2A: Eukaryotic tra 98.9 9.6E-08 2.1E-12 92.7 20.0 111 113-224 60-185 (194)
251 KOG1064 RAVE (regulator of V-A 98.9 6.8E-09 1.5E-13 121.3 13.3 217 15-251 2204-2439(2439)
252 KOG2139 WD40 repeat protein [G 98.9 1.3E-07 2.9E-12 94.1 19.9 181 65-253 98-306 (445)
253 PRK00178 tolB translocation pr 98.9 2.7E-07 5.8E-12 102.3 24.5 224 3-239 183-427 (430)
254 KOG0280 Uncharacterized conser 98.9 9.4E-07 2E-11 85.9 23.7 256 38-298 44-335 (339)
255 KOG1409 Uncharacterized conser 98.9 6.3E-08 1.4E-12 95.8 16.0 233 19-257 68-393 (404)
256 PF10282 Lactonase: Lactonase, 98.9 1.1E-05 2.4E-10 86.3 34.6 262 33-301 2-329 (345)
257 PRK04792 tolB translocation pr 98.8 4.3E-07 9.2E-12 100.5 23.4 216 13-240 211-447 (448)
258 TIGR02800 propeller_TolB tol-p 98.8 1.1E-06 2.4E-11 97.1 26.7 196 92-288 170-386 (417)
259 KOG4547 WD40 repeat-containing 98.8 6E-07 1.3E-11 95.3 22.7 171 84-256 7-218 (541)
260 KOG1912 WD40 repeat protein [G 98.8 6.8E-07 1.5E-11 97.1 23.3 296 2-303 38-558 (1062)
261 KOG4547 WD40 repeat-containing 98.8 6.3E-07 1.4E-11 95.1 22.7 182 33-218 8-220 (541)
262 KOG0309 Conserved WD40 repeat- 98.8 6.7E-08 1.5E-12 104.1 15.5 285 5-298 11-341 (1081)
263 COG5354 Uncharacterized protei 98.8 6E-06 1.3E-10 86.2 28.4 284 4-300 17-352 (561)
264 TIGR02658 TTQ_MADH_Hv methylam 98.8 1E-05 2.2E-10 84.7 30.3 252 40-304 27-338 (352)
265 PRK11138 outer membrane biogen 98.8 5.4E-06 1.2E-10 90.7 28.5 279 2-295 82-393 (394)
266 COG5170 CDC55 Serine/threonine 98.8 2.5E-07 5.4E-12 90.2 15.6 265 18-297 25-368 (460)
267 PF04762 IKI3: IKI3 family; I 98.8 6.1E-06 1.3E-10 98.0 30.5 270 18-299 74-459 (928)
268 KOG0309 Conserved WD40 repeat- 98.7 3.3E-08 7.2E-13 106.3 9.9 201 10-219 105-340 (1081)
269 KOG2041 WD40 repeat protein [G 98.7 7.6E-07 1.6E-11 95.7 19.3 236 9-254 61-333 (1189)
270 COG5354 Uncharacterized protei 98.7 1E-05 2.3E-10 84.5 25.6 280 3-300 57-399 (561)
271 TIGR02658 TTQ_MADH_Hv methylam 98.7 7.6E-05 1.7E-09 78.3 31.7 252 1-265 29-339 (352)
272 KOG1354 Serine/threonine prote 98.6 2E-06 4.4E-11 85.3 17.7 272 9-293 62-431 (433)
273 PRK04792 tolB translocation pr 98.6 1.1E-05 2.4E-10 89.4 26.1 224 41-277 199-446 (448)
274 PRK01029 tolB translocation pr 98.6 1.1E-05 2.3E-10 88.8 25.6 217 14-240 179-425 (428)
275 PLN02919 haloacid dehalogenase 98.6 2.4E-05 5.2E-10 94.9 30.4 228 69-301 571-893 (1057)
276 PF10282 Lactonase: Lactonase, 98.6 0.00024 5.2E-09 76.1 34.6 251 19-275 36-345 (345)
277 KOG4532 WD40-like repeat conta 98.6 1.1E-05 2.4E-10 77.6 20.9 251 36-297 48-332 (344)
278 KOG4532 WD40-like repeat conta 98.6 3.8E-06 8.3E-11 80.7 17.3 215 89-303 49-289 (344)
279 PRK01029 tolB translocation pr 98.6 3E-05 6.5E-10 85.2 26.9 230 40-278 165-425 (428)
280 KOG1912 WD40 repeat protein [G 98.6 4.9E-06 1.1E-10 90.7 19.6 278 18-301 14-369 (1062)
281 PLN02919 haloacid dehalogenase 98.5 8.2E-05 1.8E-09 90.3 31.4 222 23-256 571-886 (1057)
282 PRK00178 tolB translocation pr 98.5 2.2E-05 4.7E-10 87.1 24.8 203 93-296 180-406 (430)
283 KOG3914 WD repeat protein WDR4 98.5 1.1E-06 2.5E-11 89.1 13.0 161 153-313 65-240 (390)
284 COG2706 3-carboxymuconate cycl 98.5 0.00039 8.5E-09 70.4 30.2 252 39-297 15-322 (346)
285 PF13360 PQQ_2: PQQ-like domai 98.5 0.00013 2.8E-09 73.7 27.9 208 91-302 2-236 (238)
286 KOG4190 Uncharacterized conser 98.5 4.3E-07 9.3E-12 94.7 9.0 230 58-295 728-987 (1034)
287 PF00400 WD40: WD domain, G-be 98.5 5E-07 1.1E-11 62.4 6.3 38 9-46 1-39 (39)
288 PRK11138 outer membrane biogen 98.5 0.0001 2.2E-09 80.7 27.7 266 30-304 69-361 (394)
289 KOG4714 Nucleoporin [Nuclear s 98.4 1.7E-06 3.6E-11 82.8 11.2 188 68-261 39-258 (319)
290 COG4946 Uncharacterized protei 98.4 0.00048 1E-08 71.6 28.6 118 187-304 357-485 (668)
291 PF08450 SGL: SMP-30/Gluconola 98.4 0.00059 1.3E-08 69.3 29.8 203 70-280 4-238 (246)
292 KOG1645 RING-finger-containing 98.3 6.4E-05 1.4E-09 76.5 18.6 235 57-297 185-462 (463)
293 PF08450 SGL: SMP-30/Gluconola 98.3 0.0018 3.9E-08 65.8 30.0 208 24-246 4-244 (246)
294 PF13360 PQQ_2: PQQ-like domai 98.3 0.00052 1.1E-08 69.2 25.9 210 1-222 5-235 (238)
295 COG5170 CDC55 Serine/threonine 98.2 2E-05 4.3E-10 77.3 13.3 225 64-299 25-312 (460)
296 PF15492 Nbas_N: Neuroblastoma 98.2 0.0011 2.4E-08 65.2 25.1 78 25-109 3-81 (282)
297 KOG4714 Nucleoporin [Nuclear s 98.2 2.9E-05 6.4E-10 74.5 13.9 136 160-298 100-256 (319)
298 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0016 3.6E-08 62.8 25.2 94 33-137 66-162 (354)
299 PF00400 WD40: WD domain, G-be 98.2 6.5E-06 1.4E-10 56.7 6.4 37 220-256 2-39 (39)
300 COG2706 3-carboxymuconate cycl 98.1 0.0044 9.5E-08 63.0 28.1 253 17-276 37-345 (346)
301 PF04762 IKI3: IKI3 family; I 98.1 0.0037 7.9E-08 74.8 32.0 223 64-299 74-336 (928)
302 KOG3914 WD repeat protein WDR4 98.1 3.1E-05 6.8E-10 78.9 11.8 149 70-224 67-230 (390)
303 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.014 2.9E-07 56.7 28.9 188 27-226 18-215 (354)
304 KOG1645 RING-finger-containing 98.1 9.8E-05 2.1E-09 75.2 14.6 238 3-256 177-459 (463)
305 KOG0882 Cyclophilin-related pe 98.0 6.6E-05 1.4E-09 77.4 13.2 202 17-225 7-239 (558)
306 KOG2066 Vacuolar assembly/sort 98.0 0.00011 2.3E-09 81.3 15.0 175 112-296 39-233 (846)
307 PRK04043 tolB translocation pr 98.0 0.0026 5.7E-08 69.6 25.6 196 21-230 189-412 (419)
308 KOG2314 Translation initiation 98.0 0.0013 2.7E-08 69.9 21.6 283 2-297 234-574 (698)
309 KOG1275 PAB-dependent poly(A) 98.0 0.00014 3E-09 81.3 15.0 171 33-216 150-340 (1118)
310 KOG0882 Cyclophilin-related pe 98.0 3.8E-05 8.2E-10 79.1 9.9 194 111-305 8-240 (558)
311 KOG2114 Vacuolar assembly/sort 98.0 0.0014 3E-08 73.3 22.5 171 84-256 37-241 (933)
312 KOG1275 PAB-dependent poly(A) 97.9 0.00019 4E-09 80.3 15.3 171 84-256 149-340 (1118)
313 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.00061 1.3E-08 57.8 14.8 99 192-292 2-110 (111)
314 KOG2695 WD40 repeat protein [G 97.9 2.1E-05 4.6E-10 78.3 7.0 140 165-307 228-387 (425)
315 KOG2695 WD40 repeat protein [G 97.9 3.1E-05 6.8E-10 77.1 7.8 151 126-276 228-401 (425)
316 PF15492 Nbas_N: Neuroblastoma 97.9 0.0077 1.7E-07 59.5 23.9 211 85-305 11-268 (282)
317 COG4946 Uncharacterized protei 97.9 0.0034 7.3E-08 65.5 22.2 210 29-241 276-500 (668)
318 KOG1920 IkappaB kinase complex 97.9 0.0028 6.1E-08 73.6 23.8 259 19-295 68-364 (1265)
319 KOG1920 IkappaB kinase complex 97.9 0.0082 1.8E-07 69.9 26.9 224 64-299 67-325 (1265)
320 cd00216 PQQ_DH Dehydrogenases 97.8 0.0097 2.1E-07 66.9 26.5 265 29-305 60-433 (488)
321 PF04053 Coatomer_WDAD: Coatom 97.8 0.018 3.9E-07 63.0 26.9 241 41-298 3-264 (443)
322 KOG2114 Vacuolar assembly/sort 97.7 0.006 1.3E-07 68.5 22.5 198 21-231 27-258 (933)
323 PF11768 DUF3312: Protein of u 97.7 0.1 2.2E-06 57.0 30.9 73 227-299 257-332 (545)
324 KOG1008 Uncharacterized conser 97.7 2.4E-05 5.3E-10 84.0 3.8 192 19-217 56-274 (783)
325 PF11768 DUF3312: Protein of u 97.7 0.0091 2E-07 64.8 22.5 68 150-217 259-328 (545)
326 PF08553 VID27: VID27 cytoplas 97.7 0.0092 2E-07 68.8 23.5 132 86-217 498-646 (794)
327 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0039 8.4E-08 53.0 15.1 99 153-254 2-110 (111)
328 PF04841 Vps16_N: Vps16, N-ter 97.6 0.056 1.2E-06 59.1 28.3 182 93-280 62-272 (410)
329 PF08596 Lgl_C: Lethal giant l 97.6 0.018 3.9E-07 62.1 23.9 258 21-296 3-335 (395)
330 KOG2066 Vacuolar assembly/sort 97.6 0.0021 4.5E-08 71.5 16.7 175 20-218 40-233 (846)
331 PF04053 Coatomer_WDAD: Coatom 97.6 0.0074 1.6E-07 66.0 21.1 168 14-200 27-207 (443)
332 cd00216 PQQ_DH Dehydrogenases 97.5 0.033 7.1E-07 62.6 26.1 276 2-288 74-458 (488)
333 PRK04043 tolB translocation pr 97.5 0.03 6.6E-07 61.3 24.9 202 92-297 169-401 (419)
334 PF08596 Lgl_C: Lethal giant l 97.4 0.016 3.4E-07 62.6 20.6 230 67-305 3-299 (395)
335 KOG3617 WD40 and TPR repeat-co 97.4 0.0044 9.6E-08 69.0 16.0 259 20-298 15-335 (1416)
336 PF07433 DUF1513: Protein of u 97.4 0.096 2.1E-06 53.4 23.9 73 2-78 31-111 (305)
337 KOG3621 WD40 repeat-containing 97.3 0.039 8.5E-07 60.9 22.0 133 18-159 32-179 (726)
338 KOG2314 Translation initiation 97.2 0.019 4.1E-07 61.3 17.8 240 1-250 284-559 (698)
339 PF06977 SdiA-regulated: SdiA- 97.2 0.2 4.2E-06 50.3 24.2 192 59-255 15-247 (248)
340 PF04841 Vps16_N: Vps16, N-ter 97.2 0.38 8.1E-06 52.6 28.6 236 41-304 62-322 (410)
341 KOG3617 WD40 and TPR repeat-co 97.2 0.01 2.3E-07 66.2 16.0 70 22-101 62-132 (1416)
342 PF06433 Me-amine-dh_H: Methyl 97.2 0.14 3.1E-06 52.9 23.3 253 40-305 17-329 (342)
343 PF06433 Me-amine-dh_H: Methyl 97.2 0.1 2.2E-06 54.0 22.1 257 2-268 20-332 (342)
344 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.8E-08 43.8 5.4 38 9-46 2-40 (40)
345 PF06977 SdiA-regulated: SdiA- 97.1 0.1 2.2E-06 52.3 20.6 187 107-293 16-247 (248)
346 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00055 1.2E-08 76.2 4.6 211 55-285 1091-1319(1516)
347 PF00780 CNH: CNH domain; Int 97.0 0.42 9.1E-06 49.2 25.8 213 84-306 9-265 (275)
348 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.74 1.6E-05 49.8 31.3 264 33-299 40-363 (418)
349 KOG3621 WD40 repeat-containing 96.9 0.081 1.7E-06 58.6 19.6 112 18-134 75-192 (726)
350 COG3386 Gluconolactonase [Carb 96.9 0.23 5.1E-06 51.6 22.5 210 72-286 31-276 (307)
351 PF03178 CPSF_A: CPSF A subuni 96.9 0.51 1.1E-05 49.9 25.8 200 92-294 2-263 (321)
352 PRK02888 nitrous-oxide reducta 96.9 0.25 5.4E-06 55.4 23.3 202 160-363 286-548 (635)
353 PF07433 DUF1513: Protein of u 96.9 0.64 1.4E-05 47.6 24.7 212 69-305 8-256 (305)
354 KOG1008 Uncharacterized conser 96.8 0.00039 8.4E-09 75.0 0.9 189 65-256 56-273 (783)
355 PF08553 VID27: VID27 cytoplas 96.7 0.08 1.7E-06 61.3 18.6 131 1-138 506-645 (794)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 1.1 2.4E-05 50.7 27.5 110 30-140 69-189 (527)
357 COG3386 Gluconolactonase [Carb 96.6 0.69 1.5E-05 48.1 23.3 201 26-240 31-265 (307)
358 PF00780 CNH: CNH domain; Int 96.5 1.2 2.6E-05 45.9 26.9 218 31-268 8-267 (275)
359 KOG2395 Protein involved in va 96.5 0.051 1.1E-06 58.1 13.5 133 84-217 348-499 (644)
360 smart00320 WD40 WD40 repeats. 96.4 0.0087 1.9E-07 39.5 5.5 36 221-256 4-40 (40)
361 PF03178 CPSF_A: CPSF A subuni 96.2 0.39 8.4E-06 50.8 19.2 124 171-297 62-203 (321)
362 PF14870 PSII_BNR: Photosynthe 96.1 2 4.4E-05 44.4 32.5 264 18-293 15-301 (302)
363 PLN00033 photosystem II stabil 96.1 2.7 5.8E-05 45.6 33.1 141 153-293 241-396 (398)
364 PF00930 DPPIV_N: Dipeptidyl p 95.8 2.5 5.5E-05 45.3 23.5 259 2-280 26-340 (353)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 1.6 3.5E-05 47.2 20.9 97 24-121 6-117 (415)
366 KOG4499 Ca2+-binding protein R 95.7 2.2 4.9E-05 41.3 19.5 193 84-278 29-264 (310)
367 KOG2079 Vacuolar assembly/sort 95.6 0.2 4.4E-06 58.1 14.2 92 33-133 102-198 (1206)
368 KOG1832 HIV-1 Vpr-binding prot 95.5 0.014 2.9E-07 65.7 4.2 122 180-304 1092-1222(1516)
369 KOG4640 Anaphase-promoting com 95.4 0.074 1.6E-06 58.1 9.2 88 189-276 20-114 (665)
370 PF05096 Glu_cyclase_2: Glutam 95.4 3.3 7.1E-05 41.6 20.0 122 8-140 32-157 (264)
371 PRK13684 Ycf48-like protein; P 95.3 4.8 0.00011 42.7 31.7 266 18-295 44-330 (334)
372 PRK02888 nitrous-oxide reducta 95.3 2.5 5.4E-05 47.6 20.8 91 208-298 294-406 (635)
373 KOG2444 WD40 repeat protein [G 95.3 0.02 4.3E-07 54.9 4.0 129 164-301 33-171 (238)
374 KOG4640 Anaphase-promoting com 95.2 0.072 1.6E-06 58.2 8.4 75 229-303 20-99 (665)
375 KOG2395 Protein involved in va 95.1 0.28 6E-06 52.8 12.0 129 1-139 358-499 (644)
376 KOG2444 WD40 repeat protein [G 95.0 0.034 7.3E-07 53.3 4.7 124 125-256 33-164 (238)
377 KOG1897 Damage-specific DNA bi 94.9 10 0.00022 44.4 33.2 282 13-298 300-615 (1096)
378 PF05096 Glu_cyclase_2: Glutam 94.2 5.9 0.00013 39.8 18.4 198 190-402 45-262 (264)
379 COG0823 TolB Periplasmic compo 94.2 1.2 2.5E-05 48.9 14.9 158 141-298 183-360 (425)
380 TIGR03118 PEPCTERM_chp_1 conse 94.1 7.6 0.00016 39.5 20.6 61 244-304 216-287 (336)
381 PRK13684 Ycf48-like protein; P 94.0 9.6 0.00021 40.4 27.0 227 65-299 45-290 (334)
382 COG0823 TolB Periplasmic compo 93.7 3 6.6E-05 45.6 17.1 148 14-172 187-349 (425)
383 KOG3616 Selective LIM binding 93.5 11 0.00024 42.6 20.4 68 19-99 14-82 (1636)
384 PF14870 PSII_BNR: Photosynthe 93.4 11 0.00024 39.1 29.1 223 22-255 64-301 (302)
385 PF02897 Peptidase_S9_N: Proly 93.0 16 0.00035 40.0 32.1 227 68-300 126-408 (414)
386 KOG4441 Proteins containing BT 93.0 5.2 0.00011 45.8 18.1 179 33-221 288-502 (571)
387 PF15390 DUF4613: Domain of un 92.9 4.8 0.0001 44.5 16.4 169 113-286 20-221 (671)
388 COG3204 Uncharacterized protei 92.9 12 0.00026 37.9 20.4 185 61-250 81-304 (316)
389 PF12894 Apc4_WD40: Anaphase-p 92.6 0.36 7.7E-06 34.4 5.2 34 65-104 11-44 (47)
390 KOG2079 Vacuolar assembly/sort 92.6 0.52 1.1E-05 55.0 9.2 54 203-256 102-158 (1206)
391 PRK13616 lipoprotein LpqB; Pro 92.5 11 0.00025 43.1 20.0 175 114-291 351-563 (591)
392 KOG2280 Vacuolar assembly/sort 92.3 3.1 6.7E-05 47.1 14.3 80 10-98 74-153 (829)
393 PF12894 Apc4_WD40: Anaphase-p 92.3 0.45 9.8E-06 33.9 5.3 31 266-296 10-41 (47)
394 PF12234 Rav1p_C: RAVE protein 92.1 5.5 0.00012 45.4 16.4 94 40-139 1-103 (631)
395 KOG2280 Vacuolar assembly/sort 92.0 15 0.00033 41.8 19.2 184 20-218 44-246 (829)
396 PF15390 DUF4613: Domain of un 91.9 3.4 7.4E-05 45.6 13.8 141 151-296 20-186 (671)
397 PHA02713 hypothetical protein; 91.6 8.3 0.00018 44.1 17.8 48 84-131 354-408 (557)
398 KOG1916 Nuclear protein, conta 90.7 0.11 2.5E-06 58.9 1.4 197 15-216 128-372 (1283)
399 TIGR02604 Piru_Ver_Nterm putat 90.5 9.3 0.0002 41.2 16.1 134 152-286 15-202 (367)
400 PF12234 Rav1p_C: RAVE protein 90.3 7.5 0.00016 44.3 15.3 102 194-296 34-156 (631)
401 PRK13616 lipoprotein LpqB; Pro 89.5 27 0.00058 40.2 19.2 177 20-212 350-562 (591)
402 KOG4441 Proteins containing BT 89.3 14 0.0003 42.4 16.8 179 22-211 325-534 (571)
403 PLN00033 photosystem II stabil 89.2 37 0.00079 36.9 27.6 134 122-255 249-396 (398)
404 KOG4499 Ca2+-binding protein R 88.9 5.8 0.00013 38.6 11.0 110 9-123 139-264 (310)
405 COG3292 Predicted periplasmic 88.9 30 0.00065 38.4 17.5 270 19-302 164-452 (671)
406 PHA02713 hypothetical protein; 88.7 42 0.00092 38.4 20.3 204 93-299 273-536 (557)
407 KOG3630 Nuclear pore complex, 87.5 7.3 0.00016 46.3 12.7 131 152-283 102-259 (1405)
408 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.1 60 0.0013 36.9 20.7 104 83-186 70-196 (527)
409 KOG1900 Nuclear pore complex, 87.0 7.9 0.00017 46.9 12.9 134 86-219 93-273 (1311)
410 PHA03098 kelch-like protein; P 86.9 51 0.0011 37.5 19.8 58 84-141 345-415 (534)
411 COG5167 VID27 Protein involved 86.7 22 0.00047 38.7 14.7 135 84-218 482-632 (776)
412 PF04826 Arm_2: Armadillo-like 86.4 4.3 9.3E-05 41.0 9.3 111 602-718 95-205 (254)
413 COG3391 Uncharacterized conser 85.9 56 0.0012 35.4 29.0 264 4-279 16-310 (381)
414 cd00020 ARM Armadillo/beta-cat 84.9 2 4.3E-05 37.3 5.6 98 616-717 21-119 (120)
415 KOG1897 Damage-specific DNA bi 84.7 95 0.0021 37.0 30.9 279 20-307 354-670 (1096)
416 PF14583 Pectate_lyase22: Olig 84.6 61 0.0013 34.7 25.7 195 2-207 63-300 (386)
417 PF07569 Hira: TUP1-like enhan 83.6 8.9 0.00019 37.8 9.9 33 113-145 13-45 (219)
418 KOG3616 Selective LIM binding 83.4 6.3 0.00014 44.4 9.3 73 191-264 16-90 (1636)
419 COG5167 VID27 Protein involved 83.1 47 0.001 36.3 15.2 129 166-296 485-632 (776)
420 PF14583 Pectate_lyase22: Olig 83.0 71 0.0015 34.2 29.8 105 5-120 16-130 (386)
421 TIGR03074 PQQ_membr_DH membran 82.9 1.1E+02 0.0024 36.4 22.3 59 82-140 194-278 (764)
422 COG3391 Uncharacterized conser 82.9 75 0.0016 34.4 27.5 232 67-304 32-291 (381)
423 KOG2377 Uncharacterized conser 82.5 28 0.0006 37.4 13.1 125 116-241 26-165 (657)
424 PF08728 CRT10: CRT10; InterP 82.3 30 0.00065 40.1 14.5 103 114-217 102-245 (717)
425 TIGR03074 PQQ_membr_DH membran 82.3 1.2E+02 0.0025 36.2 23.4 79 30-109 194-287 (764)
426 PF07569 Hira: TUP1-like enhan 82.0 6.3 0.00014 38.9 8.2 94 264-373 9-104 (219)
427 PF10165 Ric8: Guanine nucleot 81.8 4.5 9.7E-05 44.8 7.8 75 574-653 1-86 (446)
428 TIGR02604 Piru_Ver_Nterm putat 81.5 56 0.0012 35.2 16.1 95 150-245 71-200 (367)
429 KOG3630 Nuclear pore complex, 81.2 9 0.00019 45.6 9.9 141 22-166 103-259 (1405)
430 PF10168 Nup88: Nuclear pore c 80.8 39 0.00085 39.7 15.2 19 85-103 35-53 (717)
431 KOG2063 Vacuolar assembly/sort 80.2 39 0.00085 40.2 14.8 69 30-104 26-100 (877)
432 PF10508 Proteasom_PSMB: Prote 79.7 1.1E+02 0.0024 34.6 18.2 111 615-730 90-202 (503)
433 PF10168 Nup88: Nuclear pore c 78.7 38 0.00081 39.9 14.2 90 66-180 85-180 (717)
434 PF00930 DPPIV_N: Dipeptidyl p 77.7 6.1 0.00013 42.4 7.1 86 209-295 22-130 (353)
435 PF14655 RAB3GAP2_N: Rab3 GTPa 77.3 30 0.00065 37.7 12.0 97 9-110 297-408 (415)
436 cd00020 ARM Armadillo/beta-cat 77.2 15 0.00031 31.7 8.4 101 649-751 11-112 (120)
437 KOG2377 Uncharacterized conser 77.0 66 0.0014 34.7 13.8 151 5-163 2-166 (657)
438 KOG1983 Tomosyn and related SN 77.0 1.8E+02 0.0038 36.0 19.7 70 228-300 197-268 (993)
439 KOG4460 Nuclear pore complex, 75.2 48 0.001 36.3 12.5 72 231-302 105-204 (741)
440 COG3490 Uncharacterized protei 75.2 1E+02 0.0022 31.4 17.5 204 2-216 94-346 (366)
441 PF10313 DUF2415: Uncharacteri 74.7 16 0.00035 25.4 5.9 34 66-101 1-34 (43)
442 PF02897 Peptidase_S9_N: Proly 74.6 1.4E+02 0.003 32.7 31.6 210 22-241 126-382 (414)
443 KOG4659 Uncharacterized conser 74.1 1.4E+02 0.003 36.8 16.7 34 15-48 343-384 (1899)
444 COG3823 Glutamine cyclotransfe 73.6 90 0.002 30.2 14.1 97 30-139 55-157 (262)
445 PHA03098 kelch-like protein; P 73.1 1E+02 0.0022 35.2 15.9 18 356-373 503-520 (534)
446 PF10647 Gmad1: Lipoprotein Lp 72.9 1.1E+02 0.0024 30.9 17.3 134 152-286 25-184 (253)
447 KOG2247 WD40 repeat-containing 72.6 1.6 3.4E-05 46.8 1.0 106 22-137 77-185 (615)
448 KOG2247 WD40 repeat-containing 72.4 0.42 9.1E-06 51.0 -3.3 139 155-293 39-185 (615)
449 COG3292 Predicted periplasmic 71.9 1.7E+02 0.0038 32.7 19.0 224 66-297 165-405 (671)
450 COG3204 Uncharacterized protei 71.8 1.2E+02 0.0027 31.0 17.7 156 15-179 81-263 (316)
451 PF10313 DUF2415: Uncharacteri 71.5 12 0.00026 26.0 4.7 30 20-49 1-34 (43)
452 PF07995 GSDH: Glucose / Sorbo 71.5 85 0.0018 33.2 13.8 50 191-240 3-59 (331)
453 KOG1916 Nuclear protein, conta 71.1 3.5 7.6E-05 47.5 3.2 161 5-180 161-375 (1283)
454 COG1520 FOG: WD40-like repeat 71.0 1.5E+02 0.0033 31.7 28.1 210 83-298 69-307 (370)
455 PF14781 BBS2_N: Ciliary BBSom 70.0 82 0.0018 28.2 14.2 113 26-140 5-125 (136)
456 PF11715 Nup160: Nucleoporin N 69.9 33 0.00072 39.2 11.1 79 32-111 160-259 (547)
457 PF07995 GSDH: Glucose / Sorbo 68.5 1.4E+02 0.0029 31.7 14.6 49 152-200 3-59 (331)
458 KOG1900 Nuclear pore complex, 67.1 82 0.0018 38.7 13.2 141 35-180 94-273 (1311)
459 smart00564 PQQ beta-propeller 66.1 15 0.00032 23.4 4.3 26 83-108 7-32 (33)
460 PF08801 Nucleoporin_N: Nup133 65.4 99 0.0022 34.0 13.3 48 85-138 39-94 (422)
461 PF12657 TFIIIC_delta: Transcr 64.4 44 0.00096 31.5 8.9 35 67-101 87-122 (173)
462 KOG4199 Uncharacterized conser 64.1 1.9E+02 0.0041 30.2 13.4 148 598-758 146-312 (461)
463 PHA02790 Kelch-like protein; P 63.9 2.5E+02 0.0054 31.5 18.9 104 30-143 271-387 (480)
464 PF08728 CRT10: CRT10; InterP 63.9 81 0.0017 36.7 12.1 67 229-295 163-245 (717)
465 PF01011 PQQ: PQQ enzyme repea 62.4 20 0.00043 24.0 4.4 27 84-110 2-28 (38)
466 COG4590 ABC-type uncharacteriz 61.9 42 0.00091 36.0 8.6 154 146-299 216-389 (733)
467 PF10647 Gmad1: Lipoprotein Lp 61.9 1.8E+02 0.004 29.3 20.8 133 114-247 25-184 (253)
468 COG4590 ABC-type uncharacteriz 61.6 19 0.00041 38.5 6.1 41 10-51 211-252 (733)
469 KOG3522 Predicted guanine nucl 61.0 19 0.00042 41.6 6.4 139 160-301 546-702 (925)
470 PHA02790 Kelch-like protein; P 60.8 2.3E+02 0.0051 31.7 15.4 65 30-104 318-388 (480)
471 PF05935 Arylsulfotrans: Aryls 60.5 2.8E+02 0.0061 31.0 16.1 109 195-305 153-310 (477)
472 KOG1898 Splicing factor 3b, su 59.4 4E+02 0.0086 32.4 16.4 91 86-176 948-1045(1205)
473 PF12755 Vac14_Fab1_bd: Vacuol 58.7 30 0.00065 29.1 5.8 68 599-668 22-91 (97)
474 COG1520 FOG: WD40-like repeat 57.9 2.7E+02 0.0058 29.9 29.1 193 27-228 65-279 (370)
475 PF04826 Arm_2: Armadillo-like 57.7 2.2E+02 0.0047 28.8 14.6 99 615-720 67-165 (254)
476 smart00036 CNH Domain found in 57.6 2.4E+02 0.0052 29.3 27.8 221 32-266 15-280 (302)
477 KOG1898 Splicing factor 3b, su 57.4 4.3E+02 0.0093 32.1 26.5 76 19-97 582-668 (1205)
478 PF11725 AvrE: Pathogenicity f 56.8 3.3E+02 0.0072 34.9 16.0 260 21-292 439-768 (1774)
479 PF14781 BBS2_N: Ciliary BBSom 56.4 1.5E+02 0.0033 26.6 12.0 99 203-302 13-131 (136)
480 KOG4500 Rho/Rac GTPase guanine 56.2 1E+02 0.0022 33.2 10.3 107 617-728 102-221 (604)
481 PF12657 TFIIIC_delta: Transcr 55.3 54 0.0012 30.9 7.8 24 153-177 7-30 (173)
482 KOG4460 Nuclear pore complex, 54.8 85 0.0019 34.6 9.6 95 67-185 105-204 (741)
483 TIGR01063 gyrA DNA gyrase, A s 54.7 4.6E+02 0.0099 31.6 27.0 222 28-256 493-767 (800)
484 KOG1983 Tomosyn and related SN 54.5 4.7E+02 0.01 32.4 17.2 68 185-256 194-262 (993)
485 PF05804 KAP: Kinesin-associat 53.3 1.1E+02 0.0023 36.0 11.0 54 616-675 345-400 (708)
486 PF05804 KAP: Kinesin-associat 53.3 61 0.0013 38.0 9.0 101 619-724 266-366 (708)
487 PF13570 PQQ_3: PQQ-like domai 51.7 46 0.00099 22.4 4.9 22 118-139 17-38 (40)
488 PF01731 Arylesterase: Arylest 50.5 61 0.0013 26.6 6.2 48 250-297 36-85 (86)
489 PF14779 BBS1: Ciliary BBSome 50.5 1.5E+02 0.0033 29.8 10.2 73 65-137 176-255 (257)
490 PF08801 Nucleoporin_N: Nup133 49.8 1.9E+02 0.004 31.8 12.1 16 33-48 81-96 (422)
491 KOG3522 Predicted guanine nucl 48.6 45 0.00097 38.8 6.8 111 21-140 583-697 (925)
492 smart00036 CNH Domain found in 48.5 3.4E+02 0.0073 28.3 25.8 217 84-305 15-279 (302)
493 TIGR01063 gyrA DNA gyrase, A s 48.4 5.6E+02 0.012 30.9 24.7 210 84-295 498-768 (800)
494 PF13570 PQQ_3: PQQ-like domai 48.1 40 0.00086 22.7 4.2 19 278-296 21-39 (40)
495 PF03224 V-ATPase_H_N: V-ATPas 47.9 1.8E+02 0.004 30.3 11.2 137 583-722 87-231 (312)
496 PF07676 PD40: WD40-like Beta 46.6 77 0.0017 21.0 5.4 32 14-45 3-38 (39)
497 PF05694 SBP56: 56kDa selenium 45.9 2.2E+02 0.0047 31.1 11.0 88 210-297 222-343 (461)
498 PF13513 HEAT_EZ: HEAT-like re 45.7 69 0.0015 23.2 5.5 52 618-671 3-54 (55)
499 KOG2063 Vacuolar assembly/sort 45.7 3.9E+02 0.0084 32.2 14.0 67 235-304 206-276 (877)
500 PF14779 BBS1: Ciliary BBSome 45.6 3.4E+02 0.0073 27.4 18.1 67 227-293 174-255 (257)
No 1
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-127 Score=995.07 Aligned_cols=719 Identities=42% Similarity=0.688 Sum_probs=635.0
Q ss_pred CCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE-EEEeCCCCCCCCcE
Q 004329 6 FKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP-LAWISPNEEFPEGG 84 (760)
Q Consensus 6 ~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~ 84 (760)
|+.|++.+++.||+++|+.+++.++..++++|+||++++|+....+ +.....+.+|.+.|.+ ++|.+... +.
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~---~l~~~~~~~~~g~i~~~i~y~e~~~----~~ 73 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ---YLETHAFEGPKGFIANSICYAESDK----GR 73 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcc---cccceecccCcceeeccceeccccC----cc
Confidence 5689999999999999999999988889999999999999986333 5566778889999988 88887333 36
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
+++|+.|++|.+|...+..+..++++|+..|||++.. +..+++||||.++++|..+++...+.+|..+||++...|++.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~ 153 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENT 153 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCc
Confidence 9999999999999999999999999999999999976 666999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCC-Ce
Q 004329 164 IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-GL 242 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~-~~ 242 (760)
++|||.|++|++|..++..++|.+|++.|+++++.+++.|++|++||.|++|+++|+++.++.+|+..|++++...+ +.
T Consensus 154 ~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred EEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995554 49
Q ss_pred EEEEeCCCcEEEEeCCceEEEEecCC-cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-cceEEec
Q 004329 243 IVSGSEDRFAKIWKDGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-SQYKLCR 320 (760)
Q Consensus 243 l~s~s~Dg~I~iwd~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (760)
++++|+|++++||+.+.|.+.+.||. +||++.+.++|++++||+||.||||..+..+.+....++++...+ ++.....
T Consensus 234 Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt 313 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKT 313 (745)
T ss_pred EEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999889999999999 999999999999999999999999999999999999999999998 6777777
Q ss_pred cccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEEeccccceee--ccceeeCCCCCCCcccccCccceEEEEe
Q 004329 321 KKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK--LGEVVDGPDDGMNRPILDGIQYDYVFDV 398 (760)
Q Consensus 321 ~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~W~~--~g~~~~~~~~~~~~~~~~g~~yd~vf~v 398 (760)
...|+++..++|+.+.+..+|++||++++++.++.+.+|+|+.++.+|.+ +|+++++.+.+ +|++++|++|||||+|
T Consensus 314 ~~~g~v~~~~lPg~e~L~spGt~dGq~~~Vr~~~~v~ayqws~~e~r~ikdvig~~~~~~~~s-~K~l~EGKeYDyvF~V 392 (745)
T KOG0301|consen 314 EEVGGVKKDDLPGLEILKSPGTRDGQTKVVRDGENVEAYQWSNGEWRWIKDVIGEVVAAQGNS-GKVLHEGKEYDYVFDV 392 (745)
T ss_pred hhhCccccccCCchhhhcCCCCCCCcEEEEEcCCcceeEEeecccceeeccccccccccCCCC-cceeecccccceEEEE
Confidence 78899999999999999999999999999999999999999988888888 77877666555 5999999999999999
Q ss_pred ecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCC
Q 004329 399 DIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKD-FTLNTSFRDPYTGASAYVPGQPSSMSA 477 (760)
Q Consensus 399 di~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~-~~~~~~~~~p~~~~~~y~~~~~~~~~~ 477 (760)
||+||+|++|||||++||||+||++||++|+||.+|+||||+||+||+.|.. ....+.|.|||||++||+||++++ .+
T Consensus 393 Di~dGep~~kLPyN~sdnPy~AA~~FL~k~~Lp~sy~dqvv~FI~kNt~g~~l~~~~~~~~dpftg~~ryvp~SSnt-~~ 471 (745)
T KOG0301|consen 393 DIGDGEPPYKLPYNVSDNPYQAAQKFLEKNQLPVSYRDQVVKFILKNTDGLSLFAANPSYEDPFTGGGRYVPGSSNT-AA 471 (745)
T ss_pred EccCCCCceecCcCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHhcccccccccCCcccCccCCCcccccccccc-cC
Confidence 9999999999999999999999999999999999999999999999997766 344566999999999999965542 22
Q ss_pred CCCCC-------Ccc--------eeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhc
Q 004329 478 IPAKP-------TFK--------HIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKD 542 (760)
Q Consensus 478 ~~~~~-------~~~--------~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~ 542 (760)
.|..| ... ++|++.|..|+..|.. +|||+. +++++++..+++++..++.
T Consensus 472 dpft~~~~yv~~~~n~~~~~~~y~~p~~~~~~~~~~~~~------~~~N~~----------kl~~d~~~~~eeil~li~~ 535 (745)
T KOG0301|consen 472 DPFTGSGRYVPSSSNPLTGDSGYSLPVKKQRIFDTLNPK------KELNAP----------KLNPDEINGLEEILSLIKN 535 (745)
T ss_pred CCCCCccccccccccccccccccccchhheeeccccCch------hhhcCc----------ccCcchhhhHHHHHHhhcC
Confidence 22111 122 7899999999998877 567722 4678899999999998887
Q ss_pred cCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHH
Q 004329 543 TSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTG 622 (760)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~ 622 (760)
++.| ++.....+.+|..++ +||.+++||+||++||++.|+..+.+++. .+.+++++.+++.... ..|+|+||+
T Consensus 536 s~~~--~~e~~~~l~~l~~l~-~wp~~~~fPalDilRl~v~h~~~~s~~~~-~~~~~~~~~~li~~~~---~~~an~ll~ 608 (745)
T KOG0301|consen 536 SSHY--SSEVLQSLLALAILL-QWPVEMMFPALDILRLAVKHHSSNSLFCD-REEGQNLVGTLIPILN---ADPANQLLV 608 (745)
T ss_pred CCCc--cchhHHHHHHHHHHh-cCCHHHhhhHHHHHHHHHhccchhhhhhh-hhhhhHHHHhhhcccc---cchhHHHHH
Confidence 7644 344445555554445 99999999999999999999999999983 4456778888887654 567999999
Q ss_pred HHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHH-HHHHhhcccc
Q 004329 623 IRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA-ALEIAEEESI 701 (760)
Q Consensus 623 lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~-~~~~~~~~~~ 701 (760)
+|+|||+|+|+.++++++++.+.+++.+......++||+++|+||++||||+.+++.+.+.+..+++.. +.++++ +.+
T Consensus 609 vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e-~~~ 687 (745)
T KOG0301|consen 609 VRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLE-PVD 687 (745)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcc-cch
Confidence 999999999999999999999999999999888889999999999999999999998876555555555 545554 667
Q ss_pred chhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 004329 702 EVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA 757 (760)
Q Consensus 702 ~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ei~~ll 757 (760)
|-||.||+|||||||++ +..++++|+.+++..+++++++ ...++.+++++.|+.++
T Consensus 688 d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il~~~ 745 (745)
T KOG0301|consen 688 DLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDILSLL 745 (745)
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHHhcC
Confidence 78999999999999999 6699999999999999999988 44567899999877654
No 2
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=100.00 E-value=3.9e-46 Score=383.32 Aligned_cols=260 Identities=40% Similarity=0.592 Sum_probs=208.1
Q ss_pred ceeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhccCCccCCCCchhhHHHHHHHHh
Q 004329 485 KHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLK 564 (760)
Q Consensus 485 ~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 564 (760)
||||+++|+.|+++|+++|++||+|||+++ +++.+|+|+|+..|++++..+++.+.+++ .....+..+.+++.
T Consensus 1 k~~P~~~yl~f~~~n~~~i~~KL~efn~~~-----~~~~~l~~~el~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (268)
T PF08324_consen 1 KYFPQKSYLYFKQANLDKILKKLKEFNEKL-----QKELKLSEEELESLESLLSALKSTSAYHS--DLSAWLILLLKILL 73 (268)
T ss_dssp SS-S--S--------HHHHHHHHHHHHTTS-----HCCT-S-HHHHHHHHHHHCCCCCC-SS-----HHHHHHHHHHHHC
T ss_pred CCCCCCCeeeeccCCHHHHHHHHHHHHHhC-----ccccCCCHHHHHHHHHHHHHhcCCCcccc--chhHHHHHHHHHHH
Confidence 699999999999999999999999999985 26789999999999999998876665543 45566778888889
Q ss_pred cCCCCCccchhcHhhhhhcCCCchhhhhhcccch-hHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHHHhhH
Q 004329 565 TWPPAMIFPVIDILRMTILHPDGASLLLKHVENQ-NDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNR 643 (760)
Q Consensus 565 ~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~ 643 (760)
+||++++||+|||+|++++||+++++++.. ..+ .+.+..++....+ +..++|+||++|++||||.|+.|+++++++.
T Consensus 74 ~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~ 151 (268)
T PF08324_consen 74 SWPPESRFPALDLLRLAALHPPASDLLASE-DSGIADLLSTLISSGSS-SSPPANQMLALRLLANLFSHPPGRQLLLSHF 151 (268)
T ss_dssp CS-CCC-HHHHHHHHHHCCCHCHHHHHHST-TTH-HHHHHHHHHCCTT-TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTH
T ss_pred hCCCccchhHHhHHHHHHhCccHHHHHhcc-ccchHHHHHHHHHhccC-CCcHHHHHHHHHHHHHhhCCCccHHHHHhcc
Confidence 999999999999999999999999999732 222 3445555554332 3567999999999999999999999999999
Q ss_pred H-HHHHHhhhccCCC---CchhHHHHHHHHHHHHhhhhhcC-CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 644 S-EILDAFSSCYSSS---NKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 644 ~-~i~~~~~~~~~~~---~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
. .+++.+.....+. +||+|+|+||++||||+++++.+ .++.+.++++.+.+++..++.|+|++||+|+|||||++
T Consensus 152 ~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 152 DSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 9 9999998887765 89999999999999999999998 67888899999999776677899999999999999999
Q ss_pred -hhHHHHHhhccChHHHHHHHhh-cCChhHHHHHHHH
Q 004329 719 -EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADI 753 (760)
Q Consensus 719 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ei 753 (760)
+++..++++.+++..++.+.+. ++++||++|++||
T Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 232 SSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp CSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 6789999999999988877765 7789999999997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-44 Score=352.80 Aligned_cols=316 Identities=29% Similarity=0.523 Sum_probs=279.2
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.++...+.||.++|.|+.|+|+|. |+||+.|.++|+||+.+.. +..+.++|...|.|++|+||+. .|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk-----~iAS 174 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGK-----KIAS 174 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcc-----hhhc
Confidence 456778999999999999999999 9999999999999999766 6788999999999999999998 5999
Q ss_pred EeCCCeEEEEECCCCceE-EEEeCCCccEEEEEec-------CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEE
Q 004329 88 GGMDTMVLVWDLGSGEKV-QTLQGHKLQVTGVTLD-------NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~-~~l~~h~~~V~~l~~~-------~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~ 157 (760)
|+.||+|++||.++|+++ ..+.+|...|++++|. .+++++++.||.++|||+. .++..+.+|..+|+|+.
T Consensus 175 G~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred cccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 999999999999999765 6689999999999994 3459999999999999974 69999999999999999
Q ss_pred EeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeC------------C-----------------------
Q 004329 158 RIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP------------G----------------------- 200 (760)
Q Consensus 158 ~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~------------~----------------------- 200 (760)
|-.+|.+++||.|++|++|+.. .+.+.+++|...|+.++.+. +
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999854 48889999999999999871 1
Q ss_pred --CeEEEEeCCCeEEEEec--CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEE
Q 004329 201 --VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 272 (760)
Q Consensus 201 --~~l~s~s~dg~I~iwd~--~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~ 272 (760)
.++++|+.|.++.+|+- ..+++..+.+|...|+.+.|+||+ ++++++.|..|++|| +|+.+.+++ |-+.|..
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence 14999999999999994 466888899999999999999999 999999999999999 889999998 9999999
Q ss_pred EEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCC--ceeeccCCCcceEEE
Q 004329 273 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGL--EALQIPGTNAGQTKV 349 (760)
Q Consensus 273 v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~--~~l~~~g~~~g~~~~ 349 (760)
++|+.|.+ +++|+.|.++++|++++.++.. |+||. |+..+.+++||+. +
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~---------------------------DLpGh~DEVf~vDwspDG~r-V 466 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ---------------------------DLPGHADEVFAVDWSPDGQR-V 466 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecc---------------------------cCCCCCceEEEEEecCCCce-e
Confidence 99999999 7888889999999999887643 55543 5667778888864 4
Q ss_pred EeeCCceEEEEEe
Q 004329 350 VREGDNGVAYSWD 362 (760)
Q Consensus 350 v~~~~~~~~~~w~ 362 (760)
+..|.+..+.+|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 5555556777774
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=339.98 Aligned_cols=289 Identities=31% Similarity=0.478 Sum_probs=261.9
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..||..+-....+.+||...|.|++|+|||+ |++|+.||+|++||..+++. ....+.+|...|++++|.|-....
T Consensus 140 R~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 140 RLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----IGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred EeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----ccccccCcccceeEEeecccccCC
Confidence 4699999999999999999999999999999 99999999999999988873 567889999999999999876544
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~ 157 (760)
+..++++++.||.|+|||+..+.++..+.+|+.+|+|+.|. .+++++||.|++|++|+. +.+.+.+++|...|+.++
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 45589999999999999999999999999999999999998 788999999999999976 468899999999999988
Q ss_pred EeC-------------C------------------------CcEEEEECCCcEEEEeC---CCceEEeecCCCceEEEEE
Q 004329 158 RIP-------------S------------------------GEIVSGSSDTTIKLWKG---KKCAQTFVGHTDTVRGLSV 197 (760)
Q Consensus 158 ~~~-------------~------------------------~~l~tgs~dg~i~iwd~---~~~~~~~~~h~~~V~~l~~ 197 (760)
.+. . .++++||.|.++.+|+. .+++..+.+|..-|+.+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 871 1 13899999999999984 4577788999999999999
Q ss_pred eCCCe-EEEEeCCCeEEEEe-cCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEE
Q 004329 198 MPGVG-IISASHDCTIRLWA-LTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 271 (760)
Q Consensus 198 ~~~~~-l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~ 271 (760)
+||++ ++++|.|..|++|| .+|+.+..+.||-..|+.++|+.|. ++++|+.|.++++|| +.+..+.+. |.+.|.
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE
Confidence 99888 99999999999999 5799999999999999999999999 999999999999999 556666665 889999
Q ss_pred EEEEccCCc-EEEEEcCCcEEEEe
Q 004329 272 DAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 272 ~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
++.|+|||. +++|+.|..+++|.
T Consensus 456 ~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCceeecCCCceEEEeec
Confidence 999999999 78888899999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=283.99 Aligned_cols=276 Identities=23% Similarity=0.396 Sum_probs=243.6
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
++..++|+||.+.|.++.|++|.+ ++++|.||.+.|||.-+.. ..+.+.--...|..++|+|.+. ++++
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-----K~haipl~s~WVMtCA~sPSg~-----~VAc 114 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-----KVHAIPLPSSWVMTCAYSPSGN-----FVAC 114 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-----ceeEEecCceeEEEEEECCCCC-----eEEe
Confidence 566789999999999999999999 9999999999999988766 3455666688999999999998 6999
Q ss_pred EeCCCeEEEEECCCC------ceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEE
Q 004329 88 GGMDTMVLVWDLGSG------EKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 88 gs~dg~I~vwd~~~~------~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~ 158 (760)
|+.|+...||++.+. +..+.+.+|.+.+.|+.|- ++.|+++|.|.++.+||++ +....+.+|.+.|.++.+
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 999999999999855 3456789999999999996 7789999999999999985 777889999999999999
Q ss_pred eC-CCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEEEeec--CCC
Q 004329 159 IP-SGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLMEMVG--HTA 230 (760)
Q Consensus 159 ~~-~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~~--h~~ 230 (760)
.| +++ +++|+.|+..++||.+ .+.++|.+|...|++++|.|++. |++|+.|++.|+||++.. .+..+.. -..
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 99 555 9999999999999966 57889999999999999999887 999999999999998754 4444432 235
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
+|++++|+-.| +|++|..|.++.+|| .++.+..+. |.+.|.++..+|||. +++|+.|..+|||.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 89999999999 999999999999999 556665554 999999999999999 99999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-36 Score=281.49 Aligned_cols=284 Identities=27% Similarity=0.430 Sum_probs=244.2
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
...+..+|++|++.|+.++..+.+. ++++++|.++.+|++...+.......+.+.+|+..|..+..++++. +.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-----~a 78 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-----FA 78 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-----eE
Confidence 3567789999999999999987765 9999999999999998665455567888999999999999999998 68
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC-CceeEEeecC--CcCeEEEEEeC
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK-GKLVEFWEAH--NAPIQTVIRIP 160 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~-~~~~~~~~~~--~~~v~~v~~~~ 160 (760)
++++.|+++++||+.+++..+.|.+|...|.+++++ +.++++|+.|.++++|++ +.+..+...+ .+-|.|+.|+|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999999999999999999999999999999998 556999999999999987 5777666654 78899999999
Q ss_pred CC--c-EEEEECCCcEEEEeCCCce--EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEE
Q 004329 161 SG--E-IVSGSSDTTIKLWKGKKCA--QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYS 234 (760)
Q Consensus 161 ~~--~-l~tgs~dg~i~iwd~~~~~--~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~ 234 (760)
+. . +++++.|+++++||++.+. ..+.+|++.++.+.++||+. .++|+.||.+.+||++........+|...|.+
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~s 238 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNS 238 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEee
Confidence 84 2 8899999999999987654 57889999999999999887 88999999999999865444555678999999
Q ss_pred EEEeCCCeEEEEeCCCcEEEEe--CCceEEEEec----------CCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 235 IDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH----------PGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 235 v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~----------~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
++|+|+.+.++...+..|+||| .+.++..+.. .-...+++|+++|. +++|-.|+.|++|.+.
T Consensus 239 l~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999656666667799999 5555555541 12457789999999 9999999999999874
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=304.91 Aligned_cols=273 Identities=24% Similarity=0.427 Sum_probs=246.9
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC-CCCCCcEEEEEeC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN-EEFPEGGLVSGGM 90 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~~~~~l~sgs~ 90 (760)
..--|-+.+|..+.|+.++. |+|||.+|.+++|+..+.. ....+.+|...|.++.|+|.. .. .+++|+.
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~~~~----~lat~s~ 239 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVDSDL----NLATASA 239 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCCCcc----ceeeecc
Confidence 33346788999999999999 9999999999999988654 778999999999999999984 32 4999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IV 165 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~ 165 (760)
||++++|++++..++..+.+|...|..++|+ +.+|.++|.|.+-++||.. ..+...++|...|.+++|.++|. ++
T Consensus 240 Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 240 DGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred CCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceee
Confidence 9999999999999999999999999999997 7779999999999999985 55566789999999999999999 56
Q ss_pred EEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCC-
Q 004329 166 SGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHAS- 240 (760)
Q Consensus 166 tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~- 240 (760)
+|+-|..-++||++ .++..+.+|..+|.++.|+|+++ +++||.|++++|||+++ ..+..+.+|..-|+.|+|+|.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 89999999999966 46778899999999999999888 99999999999999865 467888899999999999994
Q ss_pred C-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 241 G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 241 ~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
| +|++++.|++++||. +..+++++. |.+.|.++..++|++ +++++.|.++++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4 999999999999999 667777775 999999999999999 89999999999996
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.3e-35 Score=283.28 Aligned_cols=284 Identities=27% Similarity=0.481 Sum_probs=252.5
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
+|.+ +|++.+.++||-+.|+|+++.|.+. |+||+.|++++|||+.+++ ...++.+|...|..+++++...
T Consensus 136 eWHa-pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----LkltltGhi~~vr~vavS~rHp--- 206 (460)
T KOG0285|consen 136 EWHA-PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLTGHIETVRGVAVSKRHP--- 206 (460)
T ss_pred cccC-cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeecchhheeeeeeecccCc---
Confidence 3554 5999999999999999999999988 9999999999999999887 6778899999999999999887
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~ 157 (760)
|+++++.|+.|+.||++..+.++.+.||-..|.|++.+ .+.+++|+.|.++++||++ ..+..+.+|..+|..+.
T Consensus 207 --YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 207 --YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred --eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 79999999999999999999999999999999999998 5669999999999999986 67888999999999999
Q ss_pred EeC-CCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcE
Q 004329 158 RIP-SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIV 232 (760)
Q Consensus 158 ~~~-~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v 232 (760)
+.| +.++++||.|++|++||.. +...++..|...|++++.+|... |++++.| .|+-|++ .|..+..+.+|..-|
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 988 5679999999999999954 56667888999999999999776 6666665 5999996 688888899999999
Q ss_pred EEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe---------cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 233 YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE---------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 233 ~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~---------~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
.+++...|+.+++|+++|.+.+|| .+...|... ....|.+.+|...|. +++|..|.+|++|.-+..
T Consensus 364 ntl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 364 NTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 999999999999999999999999 555444442 344789999999887 999999999999986543
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=293.66 Aligned_cols=245 Identities=27% Similarity=0.399 Sum_probs=226.8
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCC--Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDN--VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~--~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
-+|+.++..+.++|.||.+.|.++.|+|. +. ++||+.||++++|++++.. ++..+.+|...|..++|+|++.
T Consensus 200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-----~l~~l~gH~~RVs~VafHPsG~ 274 (459)
T KOG0272|consen 200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-----PLQDLEGHLARVSRVAFHPSGK 274 (459)
T ss_pred eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-----chhhhhcchhhheeeeecCCCc
Confidence 46999999999999999999999999998 33 9999999999999998554 6788999999999999999998
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
+|.|++.|.+-++||++++..+....||...|.+++|+ +..+++|+.|..-+|||++ .++..+.+|..+|.
T Consensus 275 -----~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 275 -----FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred -----eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee
Confidence 79999999999999999999988899999999999997 6669999999999999975 78889999999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEec-CCceEEEeecC
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWAL-TGQVLMEMVGH 228 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h 228 (760)
++.|+|+|. ++|||.|+++++||++ ....++.+|..-|+.++|+| .+. +++++.|+++++|.. +..+++.+.||
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 999999998 8999999999999965 56778889999999999998 344 999999999999995 67899999999
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+.|.++.+++++ .+++++.|+++++|.
T Consensus 430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999 999999999999995
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5e-33 Score=261.43 Aligned_cols=277 Identities=26% Similarity=0.460 Sum_probs=235.3
Q ss_pred ceEeEEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
..+.+.++||.++|..++|+|. |. |+|||.|+.||+|+...+ ..+.+...+ .+|+..|.+++|+|.++ +|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~-----~L 76 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGR-----YL 76 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCc-----EE
Confidence 4567889999999999999999 77 999999999999998743 245555555 57999999999999998 79
Q ss_pred EEEeCCCeEEEEECCCC--ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-----ceeEEeecCCcCeEEE
Q 004329 86 VSGGMDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNAPIQTV 156 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~v~~v 156 (760)
++++.|.++.||.-..+ +++.++.||...|.|++|+ +++|++++.|+.|-+|... .+...++.|...|..+
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 99999999999987655 6789999999999999997 7889999999999999653 6788899999999999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCC-----CceEEeecCCCceEEEEEeCCC-eEEEEeCCCeEEEEecCCceEEEeecCC
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKGK-----KCAQTFVGHTDTVRGLSVMPGV-GIISASHDCTIRLWALTGQVLMEMVGHT 229 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~~-----~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~ 229 (760)
.|+|... |+++|.|++|++|+.. .+..++.+|...|.+++|.+.+ ++++++.|++++||-..... -..|.
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~s 233 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHS 233 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcc
Confidence 9999755 8899999999999733 3688999999999999999955 69999999999999843111 12477
Q ss_pred CcEEEEEEeCCCeEEEEeCCCcEEEEe-CCc---e----EE--EEecCCcEEEEEEccC--CcEEEEEcCCcEEEEeCC
Q 004329 230 AIVYSIDSHASGLIVSGSEDRFAKIWK-DGV---C----VQ--SIEHPGCVWDAKFLEN--GDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 230 ~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~---~----~~--~~~~~~~v~~v~~~~~--g~lvt~~~dg~I~vw~~~ 296 (760)
..++.+.|. ++.|++++.|+.|++|. ... + +. .-.|...|++++|.|. +.+++|+.||.|++|.+.
T Consensus 234 r~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 899999999 77999999999999997 211 1 11 1127779999999994 449999999999999864
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=259.71 Aligned_cols=287 Identities=29% Similarity=0.422 Sum_probs=243.3
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC-----CCceEEEEeCCCccEEEEEec--CCeEEEE
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG-----SGEKVQTLQGHKLQVTGVTLD--NEDIVSS 128 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~-----~~~~~~~l~~h~~~V~~l~~~--~~~l~sg 128 (760)
....++.+|.+.|..++..+.+.. .+++++.|..+.+|++. .|.+++.+.||+..|..+..+ +++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~----~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSD----ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCc----eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence 345678999999999999988654 69999999999999874 456789999999999998876 7779999
Q ss_pred ECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe-CCCceEEeecC--CCceEEEEEeCCC-
Q 004329 129 SVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK-GKKCAQTFVGH--TDTVRGLSVMPGV- 201 (760)
Q Consensus 129 s~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd-~~~~~~~~~~h--~~~V~~l~~~~~~- 201 (760)
++|+++++||.. +..+.+.+|...|.+++++++++ +++|+.|++|++|+ .+.+..+...+ .+.|.+++|+|+.
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999999974 78889999999999999999987 99999999999999 55666666554 7899999999963
Q ss_pred -e-EEEEeCCCeEEEEecCCc-eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEE
Q 004329 202 -G-IISASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 275 (760)
Q Consensus 202 -~-l~s~s~dg~I~iwd~~~~-~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~ 275 (760)
. +++++.|+++++||+.+. ....+.+|.+.++.+.++||| ..++|+.||.+.+|| .++++..+.|...|.+++|
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f 241 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF 241 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe
Confidence 3 999999999999998764 456678999999999999999 999999999999999 7888999999999999999
Q ss_pred ccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCc
Q 004329 276 LENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDN 355 (760)
Q Consensus 276 ~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~ 355 (760)
+|+...++...+..|+|||+++++.+..+..+.... -....+...+.+.++.+|++.+....+
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~----------------s~~~~~~~clslaws~dG~tLf~g~td- 304 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP----------------SSKAGDPICLSLAWSADGQTLFAGYTD- 304 (315)
T ss_pred cCCceeEeeccCCceEEEeccchhhhhhcccccccc----------------ccccCCcEEEEEEEcCCCcEEEeeecC-
Confidence 999886777777779999999999988776553322 112234567788899999888766655
Q ss_pred eEEEEEec
Q 004329 356 GVAYSWDM 363 (760)
Q Consensus 356 ~~~~~w~~ 363 (760)
+.+..|.+
T Consensus 305 ~~irv~qv 312 (315)
T KOG0279|consen 305 NVIRVWQV 312 (315)
T ss_pred CcEEEEEe
Confidence 66777764
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.4e-33 Score=278.31 Aligned_cols=267 Identities=25% Similarity=0.460 Sum_probs=243.8
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
...|++++|+.+|. |++|+.||.+|||+.. +. ...++..|+++|.++.|+..+. +|++++.|+++.+|
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~-----l~~tl~~HkgPI~slKWnk~G~-----yilS~~vD~ttilw 303 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GN-----LISTLGQHKGPIFSLKWNKKGT-----YILSGGVDGTTILW 303 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-ch-----hhhhhhccCCceEEEEEcCCCC-----EEEeccCCccEEEE
Confidence 36899999999999 9999999999999987 44 5677888999999999999998 79999999999999
Q ss_pred ECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcE
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTI 173 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i 173 (760)
|..+++..+.+.-|..+-..+.|- +..+++++.||.|+++.++ .+..++.+|.++|.++.|.|.+. |+++|.|+++
T Consensus 304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl 383 (524)
T KOG0273|consen 304 DAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL 383 (524)
T ss_pred eccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee
Confidence 999999999999999887778886 7779999999999999764 88899999999999999999998 6799999999
Q ss_pred EEEeCC--CceEEeecCCCceEEEEEeCC----------CeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCC
Q 004329 174 KLWKGK--KCAQTFVGHTDTVRGLSVMPG----------VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 174 ~iwd~~--~~~~~~~~h~~~V~~l~~~~~----------~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~ 240 (760)
++|+.+ .+.+.+..|+..|..+.|+|. ..+++++.|++|++||+ .+.++..+..|..+|++++|+|+
T Consensus 384 kiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred EeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 999954 467789999999999999982 23999999999999995 78999999999999999999999
Q ss_pred C-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 241 G-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 241 ~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
| ++++|+.||.|.+|+ .++.++.....+.|..++|+.+|+ +..+-+||.+++-|+.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9 999999999999999 888999999999999999999999 6777779999998874
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-33 Score=279.93 Aligned_cols=285 Identities=27% Similarity=0.462 Sum_probs=247.9
Q ss_pred EEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEe----------eCCCCCeEEEEEeCCCCCC
Q 004329 13 SELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKIL----------LGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~----------~~h~~~V~~l~~~~~~~~~ 80 (760)
+.+. |+.+|.+.+|+|-.. +++|+.|-+.|+|++..... .......+ ......|++++|+.++.
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~-~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-- 248 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSN-IGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-- 248 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhcc-ccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--
Confidence 4445 999999999998655 99999999999999873110 00000001 11246799999999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTV 156 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v 156 (760)
.|++|+.||.+++|+. .|..+.++..|+++|.++.|+ ++++++++.||++.+||. +...+.+.-|..+-..+
T Consensus 249 ---~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 249 ---LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred ---eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 6999999999999997 588889999999999999998 778999999999999997 67888888999887889
Q ss_pred EEeCCCcEEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcE
Q 004329 157 IRIPSGEIVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIV 232 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v 232 (760)
.|..+..+++++.|+.|+++. ...+..++.+|.+.|.++.|.|.+. |++||.|++++||++ ++.....+.+|...|
T Consensus 325 dW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 325 DWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 999999999999999999997 4568899999999999999999666 999999999999995 577888899999999
Q ss_pred EEEEEeCCC----------eEEEEeCCCcEEEEe--CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 233 YSIDSHASG----------LIVSGSEDRFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 233 ~~v~~~p~~----------~l~s~s~Dg~I~iwd--~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+.+.|+|.| .+++++.|++|++|| .+.++..+ +|..+|.+++|+|+|+ +++|+.||.|.+|++.++
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 999999963 699999999999999 88899988 6999999999999999 888999999999999999
Q ss_pred eeechhh
Q 004329 299 KVADSLE 305 (760)
Q Consensus 299 ~~~~~~~ 305 (760)
++.+...
T Consensus 485 ~l~~s~~ 491 (524)
T KOG0273|consen 485 KLVKSYQ 491 (524)
T ss_pred heeEeec
Confidence 9887654
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=296.22 Aligned_cols=344 Identities=22% Similarity=0.360 Sum_probs=277.6
Q ss_pred ccccCCCceEeEEecc-CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 2 MDIDFKEYQLSSELRG-HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~g-H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
.+|++++.+++++.++ |+++|.-++|+|.+. +++|+.||.++|||+..+. +.+.+++|.+.|.++.|+|+...
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----~th~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----CTHSFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----EEEEecCCCceEEEEEeCCccch
Confidence 4789999999999998 999999999999998 9999999999999998554 88999999999999999998874
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCce-EEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc---------------
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEK-VQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK--------------- 141 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~--------------- 141 (760)
. .|++|..|+.+++||+.+... +..+..|.+.|+++++. +..+++++.|..+.+||..+
T Consensus 162 ~---lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~ 238 (775)
T KOG0319|consen 162 W---LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLES 238 (775)
T ss_pred h---heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheee
Confidence 3 689999999999999986654 67778899999988886 44477888888888876100
Q ss_pred --------------------------------------------------------------------------------
Q 004329 142 -------------------------------------------------------------------------------- 141 (760)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (760)
T Consensus 239 vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ 318 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ 318 (775)
T ss_pred EEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehh
Confidence
Q ss_pred --------------------------------------eeEEeecCCcCeEEEEEeCCC-cEEEEECCCcEEEEeCCC--
Q 004329 142 --------------------------------------LVEFWEAHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGKK-- 180 (760)
Q Consensus 142 --------------------------------------~~~~~~~~~~~v~~v~~~~~~-~l~tgs~dg~i~iwd~~~-- 180 (760)
.-..+.+|...|.++....+| .+++|+.|+++++|..++
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~ 398 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC 398 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc
Confidence 001334577778888765667 488999999999997532
Q ss_pred ----ceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCc------eEE----EeecCCCcEEEEEEeCCC-eE
Q 004329 181 ----CAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQ------VLM----EMVGHTAIVYSIDSHASG-LI 243 (760)
Q Consensus 181 ----~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~------~~~----~~~~h~~~v~~v~~~p~~-~l 243 (760)
+.....+|+..|.+++++..+. |+++|.|+++++|++... ... ....|...|+|++++|+. ++
T Consensus 399 ~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi 478 (775)
T KOG0319|consen 399 SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI 478 (775)
T ss_pred chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE
Confidence 3446678999999999987554 999999999999997541 111 234799999999999999 99
Q ss_pred EEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhh-h-----cc
Q 004329 244 VSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-S-----EL 313 (760)
Q Consensus 244 ~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~-~-----~~ 313 (760)
++||.|++.+||+ ......++. |...||++.|+|+.+ ++|++.|++|+||.+++..++.+++.+... - .-
T Consensus 479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~ 558 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN 558 (775)
T ss_pred EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC
Confidence 9999999999999 556666665 899999999999988 889999999999999999999988733221 1 11
Q ss_pred cceEEeccccCceeeecCCCCceee-ccCCCcceEEEEeeC
Q 004329 314 SQYKLCRKKVGGLKLEDLPGLEALQ-IPGTNAGQTKVVREG 353 (760)
Q Consensus 314 ~~~~~~~~~~g~i~~~~l~~~~~l~-~~g~~~g~~~~v~~~ 353 (760)
..+.+.+..+|-+|+|++...+... +.+|.|-.+-+..+.
T Consensus 559 ~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 559 GKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 3566788889999999999888875 457766655554443
No 15
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=100.00 E-value=1.4e-35 Score=249.92 Aligned_cols=111 Identities=52% Similarity=0.962 Sum_probs=61.1
Q ss_pred ccCCCcceEEEEeeC-CceEEEEEeccccceeeccceeeCCC--CCCCcccccCccceEEEEeecCCCCCccccCccCCC
Q 004329 339 IPGTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPD--DGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSD 415 (760)
Q Consensus 339 ~~g~~~g~~~~v~~~-~~~~~~~w~~~~~~W~~~g~~~~~~~--~~~~~~~~~g~~yd~vf~vdi~~g~~~~~l~yn~~~ 415 (760)
.+|+++|+++|++++ +...+|+|+ .++|.++|+|+++++ .+..+..|+|++|||||+||+++|.|++|||||.+|
T Consensus 2 ~~G~keGq~~~vr~~~g~veay~Ws--~~~W~kiG~Vv~~~~~~~~~~k~~~~Gk~YDyVf~Vdi~dg~~~lkLpyN~~d 79 (116)
T PF09070_consen 2 QPGKKEGQVKMVRNGNGKVEAYQWS--EGKWEKIGEVVGGPGTGSSGGKKYYEGKEYDYVFDVDIEDGGPPLKLPYNKGD 79 (116)
T ss_dssp -------------------------------------------TTSSSSEEETTEEESEEEEE--STTSS-EEEEE-TTS
T ss_pred CCCCccceEEEEEcCCCCEEEEEec--CCceEEeEEEeCCCCCCcccccccccCccceEEEEEEecCCCcceeCCccCCC
Confidence 579999999999999 666799999 899999999998543 346899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCC
Q 004329 416 NPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF 451 (760)
Q Consensus 416 ~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~~ 451 (760)
|||+||++||.+|+||++|+|||++||++|+++.++
T Consensus 80 nP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~~~~~~ 115 (116)
T PF09070_consen 80 NPYEAAQKFIERNNLPQSYLDQIANFIIQNTKGANL 115 (116)
T ss_dssp -HHHHHHHHHHHHT--CCHHHHHHHHHHHHHSTTT-
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcCC
Confidence 999999999999999999999999999999998753
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=287.32 Aligned_cols=332 Identities=25% Similarity=0.414 Sum_probs=264.7
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.+||+....+.+.|+||.+.|.++.|+|+-. |++|..|+++++||+.+... +...+..|.+.|++++|++++
T Consensus 129 v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S~vtsL~~~~d~ 204 (775)
T KOG0319|consen 129 VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKSAVTSLAFSEDS 204 (775)
T ss_pred EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhhheeeeeeccCC
Confidence 45899999999999999999999999998866 89999999999999985542 677788999999999999987
Q ss_pred CCC-----------------------------------C------CcEEEEEeCCCeEEEEECCCCce------------
Q 004329 78 EEF-----------------------------------P------EGGLVSGGMDTMVLVWDLGSGEK------------ 104 (760)
Q Consensus 78 ~~~-----------------------------------~------~~~l~sgs~dg~I~vwd~~~~~~------------ 104 (760)
... + ..++++.|.+|.+++||.+++++
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~ 284 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI 284 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence 632 1 12455555555555555432210
Q ss_pred -------------------------------------------------------------------------EEEEeCC
Q 004329 105 -------------------------------------------------------------------------VQTLQGH 111 (760)
Q Consensus 105 -------------------------------------------------------------------------~~~l~~h 111 (760)
-..+.+|
T Consensus 285 ~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH 364 (775)
T KOG0319|consen 285 DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGH 364 (775)
T ss_pred hcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCc
Confidence 0122466
Q ss_pred CccEEEEE-ec-CCeEEEEECCCeEEEEECC------ceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC-
Q 004329 112 KLQVTGVT-LD-NEDIVSSSVDSTLKRWRKG------KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK- 180 (760)
Q Consensus 112 ~~~V~~l~-~~-~~~l~sgs~dg~v~vwd~~------~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~- 180 (760)
+..|.++. ++ +..+++||.|.++++|.++ .++....+|...|.+++++..+. ++++|.|+++++|+...
T Consensus 365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 66788887 44 5589999999999999663 34455679999999999976655 88999999999999665
Q ss_pred ------ceE----EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEe
Q 004329 181 ------CAQ----TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 181 ------~~~----~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s 247 (760)
... +...|...|++++++|+.. +++||.|.+.++|++. ......+.||...|.|+.|+|.. .++++|
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc
Confidence 222 3346999999999999776 9999999999999975 67788899999999999999998 999999
Q ss_pred CCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEecccc
Q 004329 248 EDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKV 323 (760)
Q Consensus 248 ~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (760)
.|++|+||. +..|++++. |.+.|..+.|..+|. ++++++||-|++|+++++.+..++..+
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---------------- 588 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---------------- 588 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc----------------
Confidence 999999999 899999998 999999999999988 999999999999999999988877633
Q ss_pred CceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEEe
Q 004329 324 GGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWD 362 (760)
Q Consensus 324 g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~ 362 (760)
.-++|.+.-. +.+. .++..+.++.+..|.
T Consensus 589 -~DrvWaL~~~--------~~~~-~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 589 -NDRVWALSVS--------PLLD-MFVTGGGDGRIIFWK 617 (775)
T ss_pred -cceeEEEeec--------Cccc-eeEecCCCeEEEEee
Confidence 4466765421 2222 444455557777775
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=267.54 Aligned_cols=279 Identities=26% Similarity=0.478 Sum_probs=252.5
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
+...+.+.+.||...|+.+-|+|+-. ++++++|++|++||..+++ ....+++|.+.|..+.|+..+. ++
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e~~LrGHt~sv~di~~~a~Gk-----~l 165 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----LERSLRGHTDSVFDISFDASGK-----YL 165 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----hhhhhhccccceeEEEEecCcc-----EE
Confidence 44567778889999999999999988 8999999999999999887 5778999999999999999997 79
Q ss_pred EEEeCCCeEEEEECCC-CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEE--CCceeEEeecCCcCeEEEEEeC
Q 004329 86 VSGGMDTMVLVWDLGS-GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWR--KGKLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd--~~~~~~~~~~~~~~v~~v~~~~ 160 (760)
++++.|-.+.+||.++ .++++.+.+|...|.+++|- ++++++++.|.+|+.|+ ++-++.++.+|...|..+..+.
T Consensus 166 ~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred EecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 9999999999999987 57788889999999999985 88999999999999996 5689999999999999999999
Q ss_pred CCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeC-----------C-----CeEEEEeCCCeEEEEec-CCc
Q 004329 161 SGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMP-----------G-----VGIISASHDCTIRLWAL-TGQ 220 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~-----------~-----~~l~s~s~dg~I~iwd~-~~~ 220 (760)
||. +++++.|.++++|- .+.+...+..|+.+|.+++|.| + ..+.+++.|++|++||+ ++.
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 999 67899999999997 4456888999999999999976 1 13889999999999997 689
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
++.++.+|...|.+++|+|.| +|+++.+|+++++|| .++|..++. |+.-|+++.|..+.. +++|+-|..+++|..
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999 999999999999999 788888887 888999999998887 778888999999974
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=275.92 Aligned_cols=293 Identities=26% Similarity=0.435 Sum_probs=229.1
Q ss_pred cCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 5 DFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
.+++|.+.+++.||.+.|.++.|+.|.+ |++||+|-++|+|.++..+. .....+.+|++.|.++-|..+..
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~----- 202 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSL----- 202 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcc-----
Confidence 3567899999999999999999999999 99999999999999984442 34567889999999999988876
Q ss_pred EEEEEeCCCeEEEEECCC-----------------------Cce-----EE-E-----EeCCCc----------------
Q 004329 84 GLVSGGMDTMVLVWDLGS-----------------------GEK-----VQ-T-----LQGHKL---------------- 113 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~-----------------------~~~-----~~-~-----l~~h~~---------------- 113 (760)
-+++.+.||.+.+|.... ++. .. . +.....
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 489999999999998751 111 00 0 011112
Q ss_pred --------------------------cEEEEEec--CCeEEEEECC-CeEEEEECC--ceeEEeecCCcCeEEEEEeCCC
Q 004329 114 --------------------------QVTGVTLD--NEDIVSSSVD-STLKRWRKG--KLVEFWEAHNAPIQTVIRIPSG 162 (760)
Q Consensus 114 --------------------------~V~~l~~~--~~~l~sgs~d-g~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~ 162 (760)
+|..++|+ ++.++.|+.. |.+.||+.. .-+...++|...+.+++++|||
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence 33334444 4455554433 566666543 3444556899999999999999
Q ss_pred c-EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec---------------------
Q 004329 163 E-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL--------------------- 217 (760)
Q Consensus 163 ~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~--------------------- 217 (760)
+ +++|+.||.|++||... |..+|..|+..|+.+.|+..++ +++.|-||+|+.||+
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 8 78999999999999766 9999999999999999999766 999999999999996
Q ss_pred ------------------------CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---CCceEEEEecCCc
Q 004329 218 ------------------------TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIEHPGC 269 (760)
Q Consensus 218 ------------------------~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~~~~~ 269 (760)
+|+.+-.+.||+++|.+++|+|.+ .|+++|.|.+||+|| ....+.++.+...
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 233334455888888888888888 888888888888888 4446777788888
Q ss_pred EEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 270 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 270 v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
+..++|.|+|+ +++++-||.|.+||...+.+..+++
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 88888888888 8888888888888888887776655
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=246.74 Aligned_cols=260 Identities=25% Similarity=0.459 Sum_probs=218.2
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc--eEEEEeC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE--KVQTLQG 110 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~ 110 (760)
|+|+|.|.+||+|...+|. +..+++...+.|+.+...|+.. .|++++ .-.|++||++++. ++.++.+
T Consensus 13 LvsA~YDhTIRfWqa~tG~-----C~rTiqh~dsqVNrLeiTpdk~-----~LAaa~-~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGI-----CSRTIQHPDSQVNRLEITPDKK-----DLAAAG-NQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EEeccCcceeeeeehhcCe-----EEEEEecCccceeeEEEcCCcc-----hhhhcc-CCeeEEEEccCCCCCceeEEec
Confidence 9999999999999999887 7888888889999999999988 355555 4789999998875 6899999
Q ss_pred CCccEEEEEec--CCeEEEEECCCeEEEEECCcee-EEeecCCcCeEEEEEeCCC-cEEEEECCCcEEEEeCCCc--eEE
Q 004329 111 HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLV-EFWEAHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGKKC--AQT 184 (760)
Q Consensus 111 h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~~~v~~v~~~~~~-~l~tgs~dg~i~iwd~~~~--~~~ 184 (760)
|...|+++.|. ++.+++|+.||+++|||++.+. ...-.|..+|.++..+|+. .+++|..+|.|++||++.. .+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 99999999996 6669999999999999997432 2334577999999999975 4999999999999997754 333
Q ss_pred ee-cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-------ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEE
Q 004329 185 FV-GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKI 254 (760)
Q Consensus 185 ~~-~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-------~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~i 254 (760)
+. .....|+++.+.|++. ++.+.+.|+.++|++.+ .++.++..|...+..+.+||++ +|+++|.|.+++|
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 32 3457899999999887 77778889999999632 4566788999999999999999 9999999999999
Q ss_pred EeCCce-E--EEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 255 WKDGVC-V--QSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 255 wd~~~~-~--~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
|+.... . ..+ .|...+|.++||.||. |++|++|+.+|+|++..++.+..
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 993222 2 222 3778999999999999 89999999999999999886543
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=251.43 Aligned_cols=250 Identities=22% Similarity=0.376 Sum_probs=222.8
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC-ccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK-RKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
+++||.-+-...+-+.-.+..|..++|+|.|. +|.|+-|+...||++.+.+. ......+.+.+|.+.+.|+.|.+++.
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ 158 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH 158 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc
Confidence 36788877777788888899999999999999 99999999999999985422 22345667899999999999999775
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
|++++.|.+..+||+++++.+..+.+|.+.|.++++. ++.+++|+-|+..++||.+ .+.+.|.+|...|
T Consensus 159 ------ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI 232 (343)
T KOG0286|consen 159 ------ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI 232 (343)
T ss_pred ------eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc
Confidence 9999999999999999999999999999999999986 5679999999999999985 7889999999999
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeec--CCCceEEEEEeCCCe-EEEEeCCCeEEEEe-cCCceEEEee
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVG--HTDTVRGLSVMPGVG-IISASHDCTIRLWA-LTGQVLMEMV 226 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~--h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd-~~~~~~~~~~ 226 (760)
.++.|.|+|. +++|+.|++.|+||++. .+..+.. -..+|++++|+..++ +++|..|.++.+|| +.++.+..+.
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 9999999998 99999999999999775 3344442 346799999999777 88889999999999 7899999999
Q ss_pred cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+|...|.|+..+|+| .+++|+.|.++|||.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999 999999999999994
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=269.21 Aligned_cols=266 Identities=31% Similarity=0.464 Sum_probs=229.4
Q ss_pred CCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 18 HEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 18 H~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
....|+|+.+. |+++++|.+|++|+|||..+- .+...+.||++.|.|+.|... .+++|+.|.+|++|
T Consensus 196 ~skgVYClQYD-D~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqyd~r-------viisGSSDsTvrvW 262 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQYDER-------VIVSGSSDSTVRVW 262 (499)
T ss_pred cCCceEEEEec-chhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeeccce-------EEEecCCCceEEEE
Confidence 46789999985 445999999999999998744 378889999999999998543 59999999999999
Q ss_pred ECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC-----ceeEEeecCCcCeEEEEEeCCCcEEEEECCCc
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTT 172 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~ 172 (760)
|+++++++.++-+|...|..+.|++++++++|.|.++.+||+. .+.+.+.+|...|..+.|... .+++++.|.+
T Consensus 263 Dv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRT 341 (499)
T KOG0281|consen 263 DVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRT 341 (499)
T ss_pred eccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCce
Confidence 9999999999999999999999999999999999999999975 344567899999999998743 6899999999
Q ss_pred EEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeCC
Q 004329 173 IKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSED 249 (760)
Q Consensus 173 i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~D 249 (760)
|++|++. .+++++.+|...|-|+.+. +..+++|+.|.+|++||+ .|.+++.+.||+.-|.|+.|... .+++|+.|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k-rIVSGaYD 419 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVSGAYD 419 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-eeeecccc
Confidence 9999955 5678899999999888875 555999999999999997 58899999999999999999755 89999999
Q ss_pred CcEEEEeCCc-----------eEEE-EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCee
Q 004329 250 RFAKIWKDGV-----------CVQS-IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 250 g~I~iwd~~~-----------~~~~-~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~ 300 (760)
|+|++||-.. |+.+ .+|.+.|..+.|.. -++++++.|.+|.|||+..+-.
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCCCc
Confidence 9999999111 2222 24888999999953 3499999999999999987654
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=250.32 Aligned_cols=275 Identities=25% Similarity=0.388 Sum_probs=232.1
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+...+.||++.|+.+.|+|+|. |+||+.|..|.+|++. +.. .....+++|++.|..+.|.+++. .+++++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdc---eN~~~lkgHsgAVM~l~~~~d~s-----~i~S~g 109 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDC---ENFWVLKGHSGAVMELHGMRDGS-----HILSCG 109 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecc-ccc---cceeeeccccceeEeeeeccCCC-----EEEEec
Confidence 4456789999999999999999 9999999999999976 332 24556779999999999999998 699999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeE-EeecCCcCeEEEEEeCCCc-E
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVE-FWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~~~v~~v~~~~~~~-l 164 (760)
.|.+++.||.++|+.++.+++|..-|.++... ...+.+++.||++++||.++... .......+++++.|..++. +
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 99999999999999999999999999999875 33488999999999999973222 2223466799999998765 9
Q ss_pred EEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-----CceEEEeecCC----CcE
Q 004329 165 VSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-----GQVLMEMVGHT----AIV 232 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-----~~~~~~~~~h~----~~v 232 (760)
++|+-|+.|++||++ ....++.+|.++|+.+..++++. +.+-+.|.++++||++ .+++..+.+|. ...
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred eeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 999999999999975 47788999999999999999665 8999999999999973 34577777764 345
Q ss_pred EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 233 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 233 ~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
..++|+|++ .+.+|+.|+.+++|| ....+..+. |.+.|.++.|+|... +.++++|.+|.+=.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 678899999 999999999999999 334444444 889999999999998 78899999987643
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=271.60 Aligned_cols=268 Identities=24% Similarity=0.419 Sum_probs=233.7
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
-+..|..|.|.|+|+ |++|+..|...+|+..+ +.....++.|...|.++.|++++. ++++|+.+|.|++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----fnFEtilQaHDs~Vr~m~ws~~g~-----wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----FNFETILQAHDSPVRTMKWSHNGT-----WMISGDKGGMIKY 164 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce-----eeHHHHhhhhcccceeEEEccCCC-----EEEEcCCCceEEe
Confidence 355789999999999 99999999999999752 234456788999999999999998 6999999999999
Q ss_pred EECCCCceEEEEeCC-CccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC-CcEEEEECC
Q 004329 97 WDLGSGEKVQTLQGH-KLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS-GEIVSGSSD 170 (760)
Q Consensus 97 wd~~~~~~~~~l~~h-~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~-~~l~tgs~d 170 (760)
|+..- ..++.+..| ...|.+++|+ +..|+++|.||+|+|||.. +....+.+|.-.|.++.|+|. +.+++|+.|
T Consensus 165 Wqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 165 WQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred cccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC
Confidence 99863 444555554 4999999998 6669999999999999975 666778999999999999997 458899999
Q ss_pred CcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC--eEE
Q 004329 171 TTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG--LIV 244 (760)
Q Consensus 171 g~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~--~l~ 244 (760)
..|++||.+ .|+.++.+|+..|..+.|++++. |+++|.|..++++|++ .+.++.+.+|...++++.|+|-. +|.
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 999999954 67888999999999999999665 9999999999999987 67888899999999999999976 999
Q ss_pred EEeCCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 245 SGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 245 s~s~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
+|+.||.|..|. ..+++..+. |...||+++|+|-|. +++|+.|.++++|...
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999 345555554 888999999999999 7888889999999864
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-30 Score=259.74 Aligned_cols=285 Identities=18% Similarity=0.319 Sum_probs=192.9
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee---CCCCCeEEEEEeCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL---GHTSFVGPLAWISPNE 78 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~ 78 (760)
.++-++|++..+++.|+.-|+|+.|+|||. ++|++.||++.+||-.+++ ....+. +|++.|.+++|+||+.
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-----~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-----KVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-----EEEEecCCCCccccEEEEEECCCCc
Confidence 467789999999999999999999999999 9999999999999988877 344444 8999999999999998
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC---ccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK---LQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~---~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
.+++++.|.+++|||+.+.++++++.... ..-..+-|.++.|++.+.+|++.+++.. .....+.+|...|
T Consensus 249 -----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 249 -----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred -----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 59999999999999998877666653211 1122223335555555555555555432 3444555555555
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCCCceE-Ee--ecCCC---------------------------------------
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ-TF--VGHTD--------------------------------------- 190 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~-~~--~~h~~--------------------------------------- 190 (760)
+++..++++. +++|+.||.|.-|+...... .+ ++|..
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 5555555554 45555555555555321110 00 11111
Q ss_pred -----------------------------------------ceEEEEEeCCCe-EEEEeCCCeEEEEecCCce---EEEe
Q 004329 191 -----------------------------------------TVRGLSVMPGVG-IISASHDCTIRLWALTGQV---LMEM 225 (760)
Q Consensus 191 -----------------------------------------~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~---~~~~ 225 (760)
...+++++|++. ++.|+.||.|++|.+.+.. ....
T Consensus 404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred cCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 234566677555 7777777777777776532 2334
Q ss_pred ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCce-EEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 226 VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC-VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~-~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
..|.+.|++++++|++ +|++|...+.+.+|| .+.. ..... |.+.|.+++|+|++. +++|+-|-.|.||+++.
T Consensus 484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 5677777777777777 777777777777777 2222 11222 777777788877777 66777777777777764
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=6.4e-31 Score=281.01 Aligned_cols=239 Identities=26% Similarity=0.467 Sum_probs=213.6
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCC--------------------------CccceeeeEeeCCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSD--------------------------KRKYHSSKILLGHT 65 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~--------------------------~~~~~~~~~~~~h~ 65 (760)
.++..-...++|..|++++. ||.|-.|..|++|.+...+ .........+.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 34444456899999999999 9999999999999987311 01112345688999
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--Cc
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GK 141 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~ 141 (760)
++|..+.|+|+.+ +|++++.|+++++|.+.+..++-.++||..+|+++.|+ +-+|+++|.|++.++|.. ..
T Consensus 452 GPVyg~sFsPd~r-----fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 452 GPVYGCSFSPDRR-----FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred Cceeeeeeccccc-----ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 9999999999998 79999999999999999999999999999999999998 556999999999999954 58
Q ss_pred eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec
Q 004329 142 LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL 217 (760)
Q Consensus 142 ~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~ 217 (760)
+.+.+.+|.+.|.|+.|+|+.. +++||.|.++|+|| .+..++.|.||.++|.+++|+|+++ +++|+.||.|++||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 9999999999999999999977 78999999999999 4567889999999999999999777 999999999999997
Q ss_pred C-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 218 T-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 218 ~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
. +..+..+.+|++.|+++.|+.+| .|++||.|.+|++||
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 5 68899999999999999999999 999999999999999
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.8e-30 Score=268.69 Aligned_cols=273 Identities=23% Similarity=0.353 Sum_probs=239.0
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
++.+.+..|+.+|.+|.++|... ++++-..|.|.||+.++.. ..+.+.-..-+|.+..|.+..+ .+++|
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----mVksfeV~~~PvRa~kfiaRkn-----Wiv~G 73 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----MVKSFEVSEVPVRAAKFIARKN-----WIVTG 73 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----eeeeeeecccchhhheeeeccc-----eEEEe
Confidence 34466777999999999999998 9999999999999998665 5677777889999999998877 69999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEecC--CeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCC-
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN--EDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSG- 162 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~- 162 (760)
+.|..|+||+..+++.+..+..|..-|.|++.++ .+++++|.|-+|++||.. .+.+++++|..-|.+++|.|..
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred cCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 9999999999999999999999999999999984 459999999999999875 7888999999999999999964
Q ss_pred -cEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCC---eEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEE
Q 004329 163 -EIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGV---GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSI 235 (760)
Q Consensus 163 -~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v 235 (760)
.++++|-|++|++|..+. +..++++|...|+++++.+++ .+++|+.|.+|+|||. +..|++++.||...|..+
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 499999999999999765 567889999999999999966 5999999999999997 567899999999999999
Q ss_pred EEeCCC-eEEEEeCCCcEEEEeC--CceEEEEec-CCcEEEEEEccCCc-EEEEEcCCcEEE
Q 004329 236 DSHASG-LIVSGSEDRFAKIWKD--GVCVQSIEH-PGCVWDAKFLENGD-IVTACSDGVTRI 292 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd~--~~~~~~~~~-~~~v~~v~~~~~g~-lvt~~~dg~I~v 292 (760)
+|+|.- .+++|++||++|||+. -+...++.. -..+||++-.+.+. ++.|.++|.|.+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999998 9999999999999994 344444553 35999999888766 666666666543
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-29 Score=263.14 Aligned_cols=351 Identities=23% Similarity=0.314 Sum_probs=269.6
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
-+||..+..+++.+.-..-+|++..|..... +++||.|..||||+..+.+ ..+.+..|...|.|++.+|..+
T Consensus 38 ~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-----kV~~FeAH~DyIR~iavHPt~P-- 110 (794)
T KOG0276|consen 38 QIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-----KVKTFEAHSDYIRSIAVHPTLP-- 110 (794)
T ss_pred EEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-----eeEEeeccccceeeeeecCCCC--
Confidence 4799999999999999999999999997777 9999999999999999876 7889999999999999999988
Q ss_pred CCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
++++++.|-+|++||.+.+ .+.+++.||..-|.+++|+ ++.++++|-|++|++|..+ .+..++++|...|.
T Consensus 111 ---~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN 187 (794)
T KOG0276|consen 111 ---YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVN 187 (794)
T ss_pred ---eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcc
Confidence 7999999999999999866 6788999999999999997 5569999999999999987 56678899999999
Q ss_pred EEEEeCCC---cEEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeec
Q 004329 155 TVIRIPSG---EIVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVG 227 (760)
Q Consensus 155 ~v~~~~~~---~l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~ 227 (760)
|+.+.+.| .+++|+.|.++++|| ..+|++++.+|...|..++|+|.-. +++|+.||++|||+... +...++.-
T Consensus 188 ~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 188 CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred eEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 99999987 499999999999999 4569999999999999999999766 89999999999999543 33344444
Q ss_pred CCCcEEEEEEeCCC-eEEEEeCCCcEEE------------------EeCCceEEEEe-----cC----------------
Q 004329 228 HTAIVYSIDSHASG-LIVSGSEDRFAKI------------------WKDGVCVQSIE-----HP---------------- 267 (760)
Q Consensus 228 h~~~v~~v~~~p~~-~l~s~s~Dg~I~i------------------wd~~~~~~~~~-----~~---------------- 267 (760)
.-..++|++..+.+ .++.|.+.|.|.+ |.....++... .+
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeL 347 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKEL 347 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhc
Confidence 56789999988877 7788777776644 43111111111 00
Q ss_pred ----CcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhccc-ceEEeccccCceeeecCCCCc--eeecc
Q 004329 268 ----GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS-QYKLCRKKVGGLKLEDLPGLE--ALQIP 340 (760)
Q Consensus 268 ----~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~l~~~~--~l~~~ 340 (760)
-....++.+|+|++++.|.||.-.||..-.-+-..--....|.+... .......+.+.+++. -...+ .+...
T Consensus 348 gs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~-knfke~ksi~~~ 426 (794)
T KOG0276|consen 348 GSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF-KNFKEHKSIRPD 426 (794)
T ss_pred cccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCceEEE-ecceeccccccc
Confidence 02345778999999999999999999854332222222233444433 333344445666665 22222 12222
Q ss_pred C----CCcceEEEEeeCCceEEEEEec
Q 004329 341 G----TNAGQTKVVREGDNGVAYSWDM 363 (760)
Q Consensus 341 g----~~~g~~~~v~~~~~~~~~~w~~ 363 (760)
+ --.|...-+++.+....|-|+.
T Consensus 427 ~~~e~i~gg~Llg~~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 427 MSAEGIFGGPLLGVRSSDFLCFYDWES 453 (794)
T ss_pred cceeeecCCceEEEEeCCeEEEEEccc
Confidence 2 2245556666677667888873
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=266.24 Aligned_cols=293 Identities=21% Similarity=0.325 Sum_probs=246.0
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC-CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD-RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D-g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
.++++.+.+++.|.-...+|..++|+..|. |+.||.. |.+-||+..+.. -+...++|...++|++++||+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq-- 363 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQ-- 363 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCCc--
Confidence 578899999999999899999999998888 8877654 899999998654 3556789999999999999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecC-CcCeEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAH-NAPIQT 155 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~-~~~v~~ 155 (760)
++++|+.||.|+|||..++-|..++..|+..|+.+.|. ++.+++.|-||+|+.||+. ...+++... .-...|
T Consensus 364 ---~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 364 ---LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC 440 (893)
T ss_pred ---EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeE
Confidence 79999999999999999999999999999999999997 6679999999999999985 556666543 446778
Q ss_pred EEEeCCCcEE-EEECCC-cEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCC
Q 004329 156 VIRIPSGEIV-SGSSDT-TIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHT 229 (760)
Q Consensus 156 v~~~~~~~l~-tgs~dg-~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~ 229 (760)
++..|.|.++ +|+.|. .|.+|+ .++.+..+.+|.++|.+++|+|.+. ++++|.|.+||+||+ ......+-..+.
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec
Confidence 9999999965 555555 599998 4566778999999999999999665 999999999999996 333333344578
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEeCCceEEE--E----------------e-----cCCcEEEEEEccCCc-EEEE
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWKDGVCVQS--I----------------E-----HPGCVWDAKFLENGD-IVTA 284 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~~~~--~----------------~-----~~~~v~~v~~~~~g~-lvt~ 284 (760)
..+..++|+|+| .+++++-||.|.+||.....+. + . .....+.+++++||. +++|
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence 889999999999 9999999999999992222111 1 1 124789999999999 8999
Q ss_pred EcCCcEEEEeCCCCeeechhh
Q 004329 285 CSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 285 ~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|....|++|++.++-++..++
T Consensus 601 G~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 601 GESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CCcccEEEEECchhheeeeEE
Confidence 999999999999988776554
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.4e-29 Score=257.42 Aligned_cols=273 Identities=35% Similarity=0.591 Sum_probs=235.0
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
.+++++|.+.|++++|+|++. +++++.||.+++|++.++. ....+..|...+.++.|++++. .+++++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~ 71 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGT-----YLASGSS 71 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCC-----EEEEEcC
Confidence 456889999999999999987 9999999999999998654 4556778999999999999885 5999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEecC--CeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN--EDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVS 166 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~t 166 (760)
||.|++|++.+++....+..|...+.++.|++ ..+++++.||.+++||.. +....+..|...+.++.++|++.+++
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 99999999998888888999999999999983 456666679999999985 56667778999999999999887554
Q ss_pred -EECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCC-eEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC
Q 004329 167 -GSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGV-GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 167 -gs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
++.|+.+++||.+ +....+..|...+.+++++|++ .+++++.|+.|++||+. ++.+..+..|...+.++.++|++
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 4559999999964 5667788899999999999977 58889999999999986 56666676899999999999988
Q ss_pred -eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 242 -LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 242 -~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
++++++.||.|++|| .+.....+. |...+.+++|+|++. +++++.||.|++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 777777799999999 456666665 777999999999987 89999999999996
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.8e-30 Score=234.93 Aligned_cols=272 Identities=26% Similarity=0.344 Sum_probs=235.1
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
..+.|.+|+++|+++.|+-+|+ .+|++.|.+||+|+...+. +++++.+|...|..++.+.++.+ +++|+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnsk-----f~s~G 78 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSK-----FASCG 78 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccc-----cccCC
Confidence 4467889999999999999999 9999999999999998766 78999999999999999988874 89999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEecC--CeEEEEECCCeEEEEECC----ceeEEeecCCcCeEEEEEeCCCc
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN--EDIVSSSVDSTLKRWRKG----KLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
.|..+.+||+.+|+..+.+.+|...|..+.|++ ..+++|+.|.++++||-+ ++++.+......|.++... +..
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~he 157 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHE 157 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccE
Confidence 999999999999999999999999999999983 349999999999999864 7888888888999998876 345
Q ss_pred EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEE--EeC
Q 004329 164 IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID--SHA 239 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~--~~p 239 (760)
+++|+.||++|.||++...........+|++++|++++. .+.++.|+++++.|- +|+.+..+++|...-+.+. ++.
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence 999999999999998887776666778999999999877 889999999999994 7899999999988666554 444
Q ss_pred CC-eEEEEeCCCcEEEEe--CCceEEEEecCC-c-EEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 240 SG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG-C-VWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 240 ~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~-~-v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
.. .+++|++||.|.+|| ....+..+.+.+ . |.+++++|.-. ++++.. +.+..|-
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 44 999999999999999 777777888666 3 79999999877 666554 4445554
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=270.08 Aligned_cols=281 Identities=23% Similarity=0.350 Sum_probs=248.3
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
.+...+.+|.+++|+|... ++++-..|.|++||.+-+. ++..+..|.++|..++|+|..+ ++++||.|-
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qp-----lFVSGGDDy 73 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQP-----LFVSGGDDY 73 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhhhccCCccceeeecCCCC-----eEEecCCcc
Confidence 3455678999999999988 9999999999999988554 6778899999999999999998 799999999
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEecCCe--EEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCC-CcEEEE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPS-GEIVSG 167 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~--l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~-~~l~tg 167 (760)
.|+||+.++.+++.++.||-..|..+.|+..+ ++++|.|.+|+||+. ++++..+.+|..-|.|..|+|. ..++++
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSa 153 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSA 153 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEe
Confidence 99999999999999999999999999999655 999999999999975 6999999999999999999995 458899
Q ss_pred ECCCcEEEEeCCCc-------------------------------eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEE
Q 004329 168 SSDTTIKLWKGKKC-------------------------------AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLW 215 (760)
Q Consensus 168 s~dg~i~iwd~~~~-------------------------------~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iw 215 (760)
|-|.+||+||.... .+.+.+|...|+-++|+|... ++||+.|+.|++|
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 99999999993310 135678999999999999666 8999999999999
Q ss_pred ecCCc---eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC-cEEEEEEccCCcEEEEEcCC
Q 004329 216 ALTGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG-CVWDAKFLENGDIVTACSDG 288 (760)
Q Consensus 216 d~~~~---~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg 288 (760)
.++.. .+-+..+|...|.++-|+|.. ++++.|+|++||||| ..+.++++++.. ..|.++.+|...+++++.|+
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCC
Confidence 98654 445567999999999999987 999999999999999 778999998654 99999999999999999999
Q ss_pred cEEEEeCCCCeeechh
Q 004329 289 VTRIWTVHSDKVADSL 304 (760)
Q Consensus 289 ~I~vw~~~~~~~~~~~ 304 (760)
-+.||.++-.+.+..+
T Consensus 314 Gm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 314 GMIVFKLERERPAYAV 329 (1202)
T ss_pred ceEEEEEcccCceEEE
Confidence 9999999866655433
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-28 Score=291.05 Aligned_cols=286 Identities=21% Similarity=0.316 Sum_probs=229.9
Q ss_pred ccCCCceEeEE-----eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC--cc-ceeeeEeeCCCCCeEEEEEe
Q 004329 4 IDFKEYQLSSE-----LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK--RK-YHSSKILLGHTSFVGPLAWI 74 (760)
Q Consensus 4 ~d~~~~~l~~~-----l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~--~~-~~~~~~~~~h~~~V~~l~~~ 74 (760)
|+....+.... +.+|.+.|.+++|+|++. ++||+.|++|+||+...... .. ......+ .+...|.+++|+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~ 541 (793)
T PLN00181 463 LSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWN 541 (793)
T ss_pred hcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEec
Confidence 34444444433 345999999999999998 99999999999999763210 00 1112222 345689999999
Q ss_pred CCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecC
Q 004329 75 SPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAH 149 (760)
Q Consensus 75 ~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~ 149 (760)
+.... ++++++.||+|++||+.+++.+..+.+|...|++++|+ +..|++|+.||+|++||.. ..+..+..+
T Consensus 542 ~~~~~----~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 542 SYIKS----QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred cCCCC----EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 86543 69999999999999999999999999999999999996 3569999999999999975 455555544
Q ss_pred CcCeEEEEEeC-CCc-EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC------
Q 004329 150 NAPIQTVIRIP-SGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT------ 218 (760)
Q Consensus 150 ~~~v~~v~~~~-~~~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~------ 218 (760)
..+.++.|.+ ++. +++|+.||.|++||.+. ....+.+|...|.++.|.++..+++++.|++|++||+.
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc
Confidence 6788999965 455 88999999999999764 35577889999999999877779999999999999974
Q ss_pred -CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC--CceEEEE--------------ecCCcEEEEEEccCCc
Q 004329 219 -GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD--GVCVQSI--------------EHPGCVWDAKFLENGD 280 (760)
Q Consensus 219 -~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~--~~~~~~~--------------~~~~~v~~v~~~~~g~ 280 (760)
...+..+.+|...+.+++++|++ ++++|+.|+.|++|+. ...+..+ .+...|.+++|+|++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 35678889999999999999998 9999999999999992 2222111 1334699999999998
Q ss_pred -EEEEEcCCcEEEEeC
Q 004329 281 -IVTACSDGVTRIWTV 295 (760)
Q Consensus 281 -lvt~~~dg~I~vw~~ 295 (760)
+++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 899999999999986
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-30 Score=252.38 Aligned_cols=283 Identities=22% Similarity=0.388 Sum_probs=234.8
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.+..+.|..|++.|.-+.|+++|+ |||+|.|.+..+|++.... .+...+++.+|..+|..+.|+|++. ++++
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvgh~~~V~yi~wSPDdr-----yLla 286 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVGHSQPVSYIMWSPDDR-----YLLA 286 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeecccCceEEEEECCCCC-----eEEe
Confidence 344577889999999999999999 9999999999999987444 2667889999999999999999998 6999
Q ss_pred EeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCC-cCeEEEEEeCCC
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHN-APIQTVIRIPSG 162 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~-~~v~~v~~~~~~ 162 (760)
++.|..+.+||+.+|.....+. +|...+.+++|. +..+++|+.|+++..||.. .....+++-. ..|++++..+||
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 9999999999999999887775 456788888886 5559999999999999985 4555566543 569999999999
Q ss_pred c-EEEEECCCcEEEEeCCCce-EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEE--E
Q 004329 163 E-IVSGSSDTTIKLWKGKKCA-QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSI--D 236 (760)
Q Consensus 163 ~-l~tgs~dg~i~iwd~~~~~-~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v--~ 236 (760)
+ +++.+.|..|++|+..... +.+.....+|++++++.+++ +++.-.+..+++||+. ...++.+.||...-+-+ |
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 8 7788899999999854332 22445568899999999888 5566788999999985 45677788887644333 3
Q ss_pred EeCCC--eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCC
Q 004329 237 SHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 237 ~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~ 298 (760)
|-... ++++|++|+.|+||+ .+.++..+. |...|++|+|+|... ++++++||+||||.....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 43322 999999999999999 888888886 888999999999877 899999999999987643
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=251.51 Aligned_cols=247 Identities=32% Similarity=0.533 Sum_probs=224.3
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|.+||..++++.+.|+||++.|.+|.|+..|+ ++++|.|=.+++||.++. +.+.+.+.+|+..|.+++|.|.++
T Consensus 132 ikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h~vS~V~f~P~gd- 206 (406)
T KOG0295|consen 132 IKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEHGVSSVFFLPLGD- 206 (406)
T ss_pred EEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH----HHHHHHhcCcccceeeEEEEecCC-
Confidence 56899999999999999999999999999999 999999999999998732 557888899999999999999987
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEE
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQT 155 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~ 155 (760)
++++++.|.+|+.|++.++-++.++.+|...|..+..+ +..+++++.|.++++|-. +.+...++.|..+|.|
T Consensus 207 ----~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 207 ----HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred ----eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 69999999999999999999999999999999999997 444899999999999965 4668889999999999
Q ss_pred EEEeCC----------C-----c-EEEEECCCcEEEEeC--CCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEe
Q 004329 156 VIRIPS----------G-----E-IVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWA 216 (760)
Q Consensus 156 v~~~~~----------~-----~-l~tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd 216 (760)
++|.|. + . +.+++.|++|++||. ..++.++.+|...|++++|+|+|+ ++++..|+++++||
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 999762 1 2 678999999999994 567778999999999999999887 99999999999999
Q ss_pred c-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 217 L-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 217 ~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+ ++++...+..|+..++++.|+.+. ++++|+-|.++++|.
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 7 467888899999999999999988 999999999999995
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=240.41 Aligned_cols=311 Identities=20% Similarity=0.279 Sum_probs=225.5
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
..+|..|++.|.+++.+|+.. ++||+.|....+|+..++. ....+.+|+..|+|+.|+.++. +|++|+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~Fshdgt-----lLATGdm 126 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGT-----LLATGDM 126 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCce-----EEEecCC
Confidence 467899999999999999777 9999999999999999876 5677899999999999999998 7999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IV 165 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~ 165 (760)
+|.|+||+..++.....+...-..+.-+.|+ ...++.|+.||.+.+|.+. ...+.+.+|..++++-.|.|+|+ ++
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 9999999999999888887666777778888 4559999999999999875 46778899999999999999998 88
Q ss_pred EEECCCcEEEEeCCCceE--Eeec-CCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEee--------cCCCcE
Q 004329 166 SGSSDTTIKLWKGKKCAQ--TFVG-HTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMV--------GHTAIV 232 (760)
Q Consensus 166 tgs~dg~i~iwd~~~~~~--~~~~-h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~--------~h~~~v 232 (760)
++..||+|++|+..++.. .+.. ......++.++..+. ++.|+.++.+++-+. +|+.+.... .+...+
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 999999999999765433 2221 122344455544433 556666666666652 333333322 565555
Q ss_pred EEEEEeCCC----eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhh-
Q 004329 233 YSIDSHASG----LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLE- 305 (760)
Q Consensus 233 ~~v~~~p~~----~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~- 305 (760)
.|+.+.|.. +.|+|+-||+|.||| ..+......|+.+|+.+.|.++..++++|.||.||.||.++|++...+.
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence 555555543 677777777777777 4445555566667777777664346777777777777777776664433
Q ss_pred ----hhhhhhcc-cceEEeccccCceeeecCC
Q 004329 306 ----LEAYASEL-SQYKLCRKKVGGLKLEDLP 332 (760)
Q Consensus 306 ----~~~~~~~~-~~~~~~~~~~g~i~~~~l~ 332 (760)
+..+.-.. .+..+..+.++..++.+.+
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 22222222 2444555666666665544
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=226.84 Aligned_cols=265 Identities=19% Similarity=0.350 Sum_probs=221.6
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|.-|...++.+.++++...+.|+.+.+.|+++ |++++ ...||+||+.++.. .+...+.+|...|.++.|..++.
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np---~Pv~t~e~h~kNVtaVgF~~dgr- 96 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP---NPVATFEGHTKNVTAVGFQCDGR- 96 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC---CceeEEeccCCceEEEEEeecCe-
Confidence 45688899999999998899999999999999 66665 57899999997762 36788999999999999999998
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCC--eEEEEECCCeEEEEECCceeE--E-eecCCcCeE
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE--DIVSSSVDSTLKRWRKGKLVE--F-WEAHNAPIQ 154 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~--~l~sgs~dg~v~vwd~~~~~~--~-~~~~~~~v~ 154 (760)
.+++|+.||+++|||++...+.+.++ |..+|+++..+.+ .|++|..+|.|++||++.... . ......+|.
T Consensus 97 ----WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 97 ----WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred ----EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 69999999999999999866655555 7799999999844 499999999999999974432 2 234457899
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCC--------CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc--eE
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGK--------KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ--VL 222 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~--------~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~--~~ 222 (760)
++...|+|. ++.+...|..++|++- .++..++.|++.+..+.++|+++ ++++|.|.+++||+.++. .-
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 999999998 5677788999999832 24557889999999999999888 999999999999998765 34
Q ss_pred EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEE
Q 004329 223 MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 275 (760)
Q Consensus 223 ~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~ 275 (760)
..+.+|...+...+||.+| +|++++.|+.+++|+ .++.++... |.....|++.
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 4567999999999999999 999999999999999 666655554 5555555554
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=5.2e-29 Score=242.29 Aligned_cols=245 Identities=27% Similarity=0.497 Sum_probs=219.9
Q ss_pred cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC
Q 004329 54 KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD 131 (760)
Q Consensus 54 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d 131 (760)
+|.....+.+|.+.|.|+++.|.+. ++++|+.|++|+|||+.+|++..++.||...|..++++ ..++++++.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-----wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-----WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-----eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC
Confidence 4556778899999999999999876 69999999999999999999999999999999999998 4569999999
Q ss_pred CeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeC-CCeEEE
Q 004329 132 STLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMP-GVGIIS 205 (760)
Q Consensus 132 g~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~-~~~l~s 205 (760)
+.|+.||+. +.++.+-+|-..|.|+..+|.-. +++|+.|.++|+||++. .+..+.+|..+|.++.+.| +.++++
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 999999985 77888999999999999999755 88999999999999664 6678899999999999998 777999
Q ss_pred EeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc
Q 004329 206 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD 280 (760)
Q Consensus 206 ~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~ 280 (760)
||.|++|++||+ .|+....+..|...|.+++.+|.. .+++++.|. |+-|+ .+..++.+. |.+.|.+++...||-
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCce
Confidence 999999999996 588888899999999999999998 888888876 99999 666666665 888999999999999
Q ss_pred EEEEEcCCcEEEEeCCCCeeechh
Q 004329 281 IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 281 lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+++|+++|.+.+||.+++......
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccc
Confidence 999999999999999998755433
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.2e-29 Score=269.36 Aligned_cols=236 Identities=28% Similarity=0.483 Sum_probs=207.7
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-------------------------------ceEEE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-------------------------------EKVQT 107 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-------------------------------~~~~~ 107 (760)
.++......++|..|++++. +++.|..|..|++|.+... ....+
T Consensus 372 YT~~nt~~~v~ca~fSddss-----mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSS-----MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEcCCcceeEeecCCcc-----hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 34444567799999999988 6899999999999988621 12345
Q ss_pred EeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe--CCC
Q 004329 108 LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK--GKK 180 (760)
Q Consensus 108 l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd--~~~ 180 (760)
+.+|.++|....|+ .++|+++|.|+++|+|.+ ..++..+++|..+||.+.|+|.|. ++++|.|++.++|. ...
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 77999999999998 556999999999999965 478888899999999999999998 88999999999997 456
Q ss_pred ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-
Q 004329 181 CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK- 256 (760)
Q Consensus 181 ~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd- 256 (760)
+.+.+.+|-..|.|+.|+|+.. +++||.|.++|+||. +|..++.+.||.++|.+++|+|+| +|++|++||.|.+||
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 8899999999999999999766 999999999999995 789999999999999999999999 999999999999999
Q ss_pred -CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 257 -DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 257 -~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.+..+..+ .|.+.|.++.|+.+|. +++|+.|.+|++||+..-.
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 55555444 5999999999999999 8999999999999987544
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=269.03 Aligned_cols=281 Identities=31% Similarity=0.514 Sum_probs=238.7
Q ss_pred CceEeEEeccC-CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 8 EYQLSSELRGH-EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 8 ~~~l~~~l~gH-~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
.+.+...+.+| ...|.++.|+++|. +++++.|+.+++|+..+... .....+.+|...|.+++|+|++. ++
T Consensus 147 ~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~-----~l 218 (456)
T KOG0266|consen 147 VFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGS-----YL 218 (456)
T ss_pred cceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCc-----EE
Confidence 45666677665 88999999999999 99999999999999964431 34555689999999999999998 69
Q ss_pred EEEeCCCeEEEEEC-CCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeC
Q 004329 86 VSGGMDTMVLVWDL-GSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 86 ~sgs~dg~I~vwd~-~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~ 160 (760)
++++.|++|++||+ ..+..++++++|...|++++|+ ++.+++|+.|++|++||.+ ++...+.+|...|.+++|.+
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 99999999999999 5568899999999999999998 6679999999999999985 88999999999999999999
Q ss_pred CCc-EEEEECCCcEEEEeCCCce----EEeecCCCc--eEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCc
Q 004329 161 SGE-IVSGSSDTTIKLWKGKKCA----QTFVGHTDT--VRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAI 231 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~~~~~----~~~~~h~~~--V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~ 231 (760)
++. +++++.|+.|++||..+.. ..+.++... +++++|+|++. +++++.|+.+++||+. +.....+.+|...
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 988 7788999999999966544 466665554 99999999777 8999999999999986 7888889888875
Q ss_pred E---EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-c-CCcEEEEEEccCCc-EEEEE--cCCcEEEEeCC
Q 004329 232 V---YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H-PGCVWDAKFLENGD-IVTAC--SDGVTRIWTVH 296 (760)
Q Consensus 232 v---~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~-~~~v~~v~~~~~g~-lvt~~--~dg~I~vw~~~ 296 (760)
+ .+...++.+ ++++|+.|+.|++|+ .+..++.+. | ...+..+.++|... +++++ .|+.+++|..+
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3 344456677 999999999999999 456666665 6 67999999999888 55555 59999999864
No 40
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=263.26 Aligned_cols=235 Identities=26% Similarity=0.427 Sum_probs=208.1
Q ss_pred CceEeEEeccCCCCEEE-EEEcC--CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 8 EYQLSSELRGHEDDVRG-ICVCD--NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~-v~~~~--~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
.|.....+.+|.+-|.+ +++.+ .+++++|+.|+++.+|.+.... +...+.+|...|.|+....++.
T Consensus 46 ~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~snVC~ls~~~~~~------ 114 (745)
T KOG0301|consen 46 QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKSNVCSLSIGEDGT------ 114 (745)
T ss_pred ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----chhhhhccccceeeeecCCcCc------
Confidence 34455678889998888 88875 3349999999999999988555 7788999999999998766664
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
+++||.|.++++|.. +++...+.+|+..|+++..- .+.+++||.|.+|++|.-++.++++.+|.+.|+.+++.+++.
T Consensus 115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~ 192 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH 192 (745)
T ss_pred eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC
Confidence 899999999999986 57777899999999998775 668999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEeC-CCceEEeecCCCceEEEEEe-CCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC
Q 004329 164 IVSGSSDTTIKLWKG-KKCAQTFVGHTDTVRGLSVM-PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 164 l~tgs~dg~i~iwd~-~~~~~~~~~h~~~V~~l~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
+++|+.||.|++|+. +.++..+.+|+..|.++... +++.++++++|+++++|+.. ++.+.+.-....|+++++.++|
T Consensus 193 flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCC
Confidence 999999999999996 78999999999999999954 46669999999999999966 7777776666699999999999
Q ss_pred eEEEEeCCCcEEEEe
Q 004329 242 LIVSGSEDRFAKIWK 256 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd 256 (760)
-+++|+.||.||||.
T Consensus 272 DIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFT 286 (745)
T ss_pred CEEEeccCceEEEEE
Confidence 999999999999997
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-28 Score=240.19 Aligned_cols=270 Identities=31% Similarity=0.446 Sum_probs=225.0
Q ss_pred cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 17 GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
-|.+.|.+|... .+.++||+.||.+|+||.. |+ ....+.+|.++|.+++|.-.+.. .+.+++++.|.++++
T Consensus 103 ~hdDWVSsv~~~-~~~IltgsYDg~~riWd~~-Gk-----~~~~~~Ght~~ik~v~~v~~n~~--~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 103 LHDDWVSSVKGA-SKWILTGSYDGTSRIWDLK-GK-----SIKTIVGHTGPIKSVAWVIKNSS--SCLFVSASMDQTLRL 173 (423)
T ss_pred cchhhhhhhccc-CceEEEeecCCeeEEEecC-Cc-----eEEEEecCCcceeeeEEEecCCc--cceEEEecCCceEEE
Confidence 388899999877 3349999999999999987 65 78889999999999988766552 246999999999999
Q ss_pred EECCCCce----EEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC---------------------------Ccee
Q 004329 97 WDLGSGEK----VQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK---------------------------GKLV 143 (760)
Q Consensus 97 wd~~~~~~----~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~---------------------------~~~~ 143 (760)
|.++.++. +..-+||...|-+++.+ +..+++||+|.++++|+. +.++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 99987743 33345999999999975 677999999999999971 1356
Q ss_pred EEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC--
Q 004329 144 EFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-- 218 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-- 218 (760)
.++.+|..+|.++.|++.+.+++++.|.+|+.||+. ....++. ......++.++|... +++|+.|..|++||.+
T Consensus 254 vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 678899999999999998889999999999999954 3444443 346789999999655 8999999999999963
Q ss_pred -C-ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe---CCceEEEE-ecCCcEEEEEEccCCcEEEEEcCCcE
Q 004329 219 -G-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSI-EHPGCVWDAKFLENGDIVTACSDGVT 290 (760)
Q Consensus 219 -~-~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd---~~~~~~~~-~~~~~v~~v~~~~~g~lvt~~~dg~I 290 (760)
+ -..+++.+|...|.++.|+|.. .|++|+.|+++++|| ...++..+ .|...|.++.|...+-+++||.|.+|
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKL 412 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceE
Confidence 2 3556788999999999999988 999999999999999 33245555 48889999999887779999999999
Q ss_pred EEEeCC
Q 004329 291 RIWTVH 296 (760)
Q Consensus 291 ~vw~~~ 296 (760)
+++.-.
T Consensus 413 ~i~~~~ 418 (423)
T KOG0313|consen 413 RIFKGS 418 (423)
T ss_pred EEeccc
Confidence 998754
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-30 Score=250.93 Aligned_cols=239 Identities=30% Similarity=0.467 Sum_probs=210.7
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
|-+||..++.+.+.|.||++.|.|+.|... .+++||.|.+|+|||.++++ +..++.+|...|..+.|+.
T Consensus 219 ikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge-----~l~tlihHceaVLhlrf~n----- 287 (499)
T KOG0281|consen 219 IKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGE-----PLNTLIHHCEAVLHLRFSN----- 287 (499)
T ss_pred eEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCc-----hhhHHhhhcceeEEEEEeC-----
Confidence 457999999999999999999999998643 49999999999999999887 7788899999999999964
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc---eEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGE---KVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
|++++++.|.+|.+||+.... +.+.+.||...|..+.|++++++++|.|.++++|++. +.++++.+|...|-|
T Consensus 288 --g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 288 --GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 365 (499)
T ss_pred --CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccccccee
Confidence 379999999999999997664 3455789999999999999999999999999999864 788899999999988
Q ss_pred EEEeCCCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCC----------ceE
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTG----------QVL 222 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~----------~~~ 222 (760)
+.+. ++ +++|+.|.+|++|| .+.+.+.+++|+.-|+++.|. +.++++|+.||+|++||+.. -++
T Consensus 366 lQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl 442 (499)
T KOG0281|consen 366 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL 442 (499)
T ss_pred hhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHH
Confidence 8764 56 77999999999999 467889999999999999997 56799999999999999732 145
Q ss_pred EEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 223 MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 223 ~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
..+..|++.|..+.|..- .+++++.|.+|.|||
T Consensus 443 ~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWd 475 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWD 475 (499)
T ss_pred HhhhhccceeEEEeecce-EEEeccCCCeEEEEE
Confidence 566789999999998654 799999999999999
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.6e-28 Score=257.99 Aligned_cols=280 Identities=22% Similarity=0.398 Sum_probs=238.3
Q ss_pred EEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 13 SELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
-++.||...|++++++.+..++..+..+.+++|+..+.+ +..++. .+.+.+..|.|.+. ++++|...|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k-----ciRTi~--~~y~l~~~Fvpgd~-----~Iv~G~k~G 434 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK-----CIRTIT--CGYILASKFVPGDR-----YIVLGTKNG 434 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc-----eeEEec--cccEEEEEecCCCc-----eEEEeccCC
Confidence 356799999999999999885555556899999998766 555554 34899999999887 799999999
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-------ceeEEee-------cCCcCeEEE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-------KLVEFWE-------AHNAPIQTV 156 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-------~~~~~~~-------~~~~~v~~v 156 (760)
.+.+||+.+...+.+.+.|.+.+++++.. +..+++||.|.+|++||.. .....+. .-...|.|+
T Consensus 435 el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v 514 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV 514 (888)
T ss_pred ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence 99999999999999999999999999986 5559999999999999743 1111111 235679999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCc
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAI 231 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~ 231 (760)
.++||++ ++++--|.++++|-+. +....+.||.-||.|+.++|++. +++||.|.+|++|-++ |.|-..+.+|...
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS 594 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS 594 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence 9999999 5577789999999654 45568889999999999999888 8999999999999986 8888999999999
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
|.++.|.|.. .++++|.|+.|+-|| .-.+++.+. |...|||++.+|+|. +++++.|.+||+|......++...
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeeh
Confidence 9999999988 999999999999998 667777776 888999999999999 788888999999998876655443
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=256.59 Aligned_cols=276 Identities=19% Similarity=0.348 Sum_probs=233.2
Q ss_pred ceEeEEeccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
-++++++.||+..|+++.|.| .+. |++|+.|+.|+||++... ..+++++.+|..+|.+++|++++. .++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----~~~lrtf~gH~k~Vrd~~~s~~g~-----~fL 274 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----RRCLRTFKGHRKPVRDASFNNCGT-----SFL 274 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----cceehhhhcchhhhhhhhccccCC-----eee
Confidence 467889999999999999999 666 999999999999999752 348889999999999999999998 489
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--C-CeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC
Q 004329 87 SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--N-EDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~ 161 (760)
+++.|+.|++||.++|++...+. ....+.|+.|+ + +.+++|+.|+.|+.||++ +.++.+..|-++|..+.|.++
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred eeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC
Confidence 99999999999999999998887 44567888886 3 569999999999999985 777788899999999999999
Q ss_pred Cc-EEEEECCCcEEEEeCCCceE---EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC----CceEEEeecCC--C
Q 004329 162 GE-IVSGSSDTTIKLWKGKKCAQ---TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT----GQVLMEMVGHT--A 230 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~~~~~---~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~----~~~~~~~~~h~--~ 230 (760)
|+ +++.+.|+.+++|+.+.... ....+.-...++..+|++. ++.=+.|..|.++... ......+.||. +
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 87 99999999999999665432 2223344566888899666 7788999999999853 33445567775 4
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEe
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWT 294 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~ 294 (760)
.-..+.||||| +|++|+.||.+.+|| +-+.+..+. |..++..+.|+|... +++++.||.|++|+
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 56678899999 999999999999999 555666665 778999999999765 99999999999996
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=6e-27 Score=238.72 Aligned_cols=288 Identities=20% Similarity=0.291 Sum_probs=233.9
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
.-++........+..|...++-..|+|.|. +++|...|+|||||....+ ......++.-.++|..++|+.++..
T Consensus 43 ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~---hiLKnef~v~aG~I~Di~Wd~ds~R-- 117 (603)
T KOG0318|consen 43 IRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE---HILKNEFQVLAGPIKDISWDFDSKR-- 117 (603)
T ss_pred EEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc---eeeeeeeeecccccccceeCCCCcE--
Confidence 345555666778889999999999999999 9999999999999987332 3344556667899999999999984
Q ss_pred CcEEEEEe--CCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 82 EGGLVSGG--MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 82 ~~~l~sgs--~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
+++.+ .++..+++-.++|..+..+.+|...|.+++|- +=++++|+.|++|.+|+-. +....++.|..-|.
T Consensus 118 ---I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 118 ---IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred ---EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 55444 33344555555788899999999999999996 3349999999999999754 66677888999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCC--CceEEee---cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC--------
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFV---GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-------- 219 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~---~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-------- 219 (760)
|+.|+|||. +++.+.||++.+||-. +.+..+. +|++.|.+++|+||+. +++++.|.+++|||+..
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 999999988 8899999999999944 4455565 7999999999999876 99999999999999621
Q ss_pred ------------------------------------ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCce
Q 004329 220 ------------------------------------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC 260 (760)
Q Consensus 220 ------------------------------------~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~ 260 (760)
..+..+.||...|+++..+|++ +|++|+.||.|.-|+ .+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 1223345899999999999999 999999999999999 3333
Q ss_pred EEE--EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCC
Q 004329 261 VQS--IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 261 ~~~--~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~ 298 (760)
-+. -.|...|.+++.+..+.+++.+.|.++++.++..+
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC
Confidence 333 23888999999888888999999999999987543
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-27 Score=220.71 Aligned_cols=283 Identities=25% Similarity=0.381 Sum_probs=224.3
Q ss_pred eeeeEeeCCCCCeEEEEEeCC-CCCCCCcEEEEEeCCCeEEEEECCCC---ceEEEE-eCCCccEEEEEec--CCeEEEE
Q 004329 56 HSSKILLGHTSFVGPLAWISP-NEEFPEGGLVSGGMDTMVLVWDLGSG---EKVQTL-QGHKLQVTGVTLD--NEDIVSS 128 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~-~~~~~~~~l~sgs~dg~I~vwd~~~~---~~~~~l-~~h~~~V~~l~~~--~~~l~sg 128 (760)
...+.+.+|.+.+..++|+|. +. .|++|+.|+.|++|+...+ .+...+ .+|+..|.+++|+ +++|+++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~-----ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGV-----ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCce-----EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe
Confidence 356778899999999999998 44 5999999999999999853 344444 3799999999996 7889999
Q ss_pred ECCCeEEEEECC----ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-----CceEEeecCCCceEEEEEe
Q 004329 129 SVDSTLKRWRKG----KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-----KCAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 129 s~dg~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-----~~~~~~~~h~~~V~~l~~~ 198 (760)
|.|.++.+|... +++..+++|...|.|++|+++|. |++++.|+.|-+|... .+...+++|+..|..+.|+
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999999999654 88999999999999999999988 7899999999999744 3667889999999999999
Q ss_pred CC-CeEEEEeCCCeEEEEecC-C---ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeCCceEEEEecCCcEEE
Q 004329 199 PG-VGIISASHDCTIRLWALT-G---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWD 272 (760)
Q Consensus 199 ~~-~~l~s~s~dg~I~iwd~~-~---~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~ 272 (760)
|. ..|+++|.|.+|++|+-. + .+++++.+|...|.+++|++.| .+++++.|++++||... ..-...|...+..
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-~~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-TDLSGMHSRALYD 238 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-cCcchhcccceEe
Confidence 94 459999999999999843 2 5789999999999999999999 99999999999999733 1112237789999
Q ss_pred EEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEee
Q 004329 273 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 352 (760)
Q Consensus 273 v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~ 352 (760)
+.|. +|-|++++.|+.|++|.....-.-..+++-.. .....+.++..+.+.+.+.-.++..
T Consensus 239 v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~------------------~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 239 VPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK------------------KEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred eeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHh------------------hhcccccccceEEEcCCCCCceeec
Confidence 9999 78899999999999998774322222221110 0111122222333334444566777
Q ss_pred CCceEEEEEec
Q 004329 353 GDNGVAYSWDM 363 (760)
Q Consensus 353 ~~~~~~~~w~~ 363 (760)
+|++.+.+|..
T Consensus 300 ~DDG~v~~W~l 310 (312)
T KOG0645|consen 300 GDDGIVNFWEL 310 (312)
T ss_pred CCCceEEEEEe
Confidence 77788888874
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=251.27 Aligned_cols=244 Identities=23% Similarity=0.432 Sum_probs=214.0
Q ss_pred ccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCCCCC
Q 004329 4 IDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNEEFP 81 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~ 81 (760)
|+...|.+-..++.|.+.|+++.|++++. ++||+.+|.|++|+..-. ..+.+..| ...|++++|+|.+.
T Consensus 123 WNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn------nVk~~~ahh~eaIRdlafSpnDs--- 193 (464)
T KOG0284|consen 123 WNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN------NVKIIQAHHAEAIRDLAFSPNDS--- 193 (464)
T ss_pred ecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh------hhHHhhHhhhhhhheeccCCCCc---
Confidence 66666666677889999999999999999 999999999999998622 34455555 49999999999776
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~ 157 (760)
.+++++.||+|+|||....+....+.+|.-.|.+++|+ .+.+++||.|..|++||. +.++.++..|+..|..+.
T Consensus 194 --kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 194 --KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred --eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 58999999999999999888888899999999999998 566999999999999987 488899999999999999
Q ss_pred EeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEecC-CceEEEe-ecCCC
Q 004329 158 RIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALT-GQVLMEM-VGHTA 230 (760)
Q Consensus 158 ~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~~-~~~~~~~-~~h~~ 230 (760)
|.+++. |+++|.|..++++|++ +.+.++++|...|+++.|+| .+.|.+|+.||.|..|.+. .+++..+ .+|..
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 999987 8899999999999987 45668899999999999999 4459999999999999976 3444443 37999
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEeCC
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWKDG 258 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~ 258 (760)
.|++++|+|-| .|++|+.|+++++|...
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999999 99999999999999833
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=261.49 Aligned_cols=279 Identities=31% Similarity=0.494 Sum_probs=242.7
Q ss_pred EEecc-CCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 13 SELRG-HEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 13 ~~l~g-H~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
..+.+ |...+.+..|. ++.+++++.|++|++|+..++. .....+.+|.+.|.++++...+. .+++|+.|
T Consensus 201 ~~~~~~~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~----~i~~~l~GH~g~V~~l~~~~~~~-----~lvsgS~D 270 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGY----LILTRLVGHFGGVWGLAFPSGGD-----KLVSGSTD 270 (537)
T ss_pred eeecccCcchhhhheee-cCeEEecCCCceeEEeecccce----EEEeeccCCCCCceeEEEecCCC-----EEEEEecC
Confidence 44454 56678888887 6679999999999999998654 23444899999999999987444 69999999
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEEEEC
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSS 169 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~ 169 (760)
.++++||..+|++...+.+|...|.++...+..+++|+.|.+|++|+.. ..+..+.+|..+|.++... .+.+++|+.
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~ 349 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSY 349 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEec
Confidence 9999999999999999999999999999999999999999999999874 7788888899999999998 666999999
Q ss_pred CCcEEEEe--CCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCc--eEEEeecCCCcEEEEEEeCCCeEEE
Q 004329 170 DTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQ--VLMEMVGHTAIVYSIDSHASGLIVS 245 (760)
Q Consensus 170 dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~h~~~v~~v~~~p~~~l~s 245 (760)
|++|++|| ..++++.+.+|...|.++.+.+...+++|+.|++|++||+... ++..+.+|...+.++.+... .+++
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~-~Lvs 428 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN-FLVS 428 (537)
T ss_pred CceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc-eeEe
Confidence 99999999 4578899999999999998876567999999999999998654 89999999999977766544 8999
Q ss_pred EeCCCcEEEEe--CCceEEEEec--CCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 246 GSEDRFAKIWK--DGVCVQSIEH--PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 246 ~s~Dg~I~iwd--~~~~~~~~~~--~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
++.|++|++|| .+.+++.+.. .+.|+.+++. +..+++++.||.+++||+.++......
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999 8889998885 3688888876 334999999999999999999877654
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=227.89 Aligned_cols=280 Identities=21% Similarity=0.313 Sum_probs=238.0
Q ss_pred eEeEEeccCCCCEEEEEEc---CCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 10 QLSSELRGHEDDVRGICVC---DNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~---~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
+.-.+..||+.+|..++|+ |+|. |++++.||.-.+-+-+++. =+.++.+|.+.|++.+...+.. .-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----wigtfeghkgavw~~~l~~na~-----~a 74 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----WIGTFEGHKGAVWSATLNKNAT-----RA 74 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----cEEeeeccCcceeeeecCchhh-----hh
Confidence 3345678999999999998 7888 9999999998888777776 4678999999999999877765 46
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeC
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~ 160 (760)
++++.|-+-++||.-+|..+..+. |..-|.+++|+ .+++++|+.+..+++||.+ .+...+.+|.+.|..+.|..
T Consensus 75 asaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec
Confidence 889999999999999999888887 89999999997 5569999999999999876 44566789999999999988
Q ss_pred CCc-EEEEECCCcEEEEeCCCce--EEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEE
Q 004329 161 SGE-IVSGSSDTTIKLWKGKKCA--QTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~~~~~--~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~ 237 (760)
..+ +++.+.|++||+||.++.. +++. ...+|+++.+++++.+++....+.|.+||...-.+..-..-...|.+...
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL 232 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASL 232 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccc
Confidence 665 8888999999999966543 3333 56789999999999999999999999999765444343445678899999
Q ss_pred eCCC-eEEEEeCCCcEEEEe--CCceEEEE--ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 238 HASG-LIVSGSEDRFAKIWK--DGVCVQSI--EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 238 ~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~--~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
+|+. .+++|++|..++.|| ++..+..+ .|.++|.|+.|+|+|. +++|+.||+||+|....++..
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9998 999999999999999 77766665 4999999999999999 788899999999999887643
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.3e-26 Score=245.26 Aligned_cols=352 Identities=18% Similarity=0.295 Sum_probs=282.2
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..|+..+.....++.||+..|+++.|...|. |+|||.|+.|.+||+-... -...+.+|...|+..-|.....
T Consensus 90 qif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-----Gl~rL~GHkd~iT~~~F~~~~~-- 162 (888)
T KOG0306|consen 90 QIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-----GLFRLRGHKDSITQALFLNGDS-- 162 (888)
T ss_pred EeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-----eeEEeecchHHHhHHhccCCCe--
Confidence 4677777788999999999999999999888 9999999999999997333 4567899999999999988555
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--------------------
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG-------------------- 140 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~-------------------- 140 (760)
++++.+.|+.|++||+++..+..+.-.|.+.+++++++++.+++++.|+.+++|++.
T Consensus 163 ---~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 163 ---FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred ---EEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 699999999999999999999999999999999999999999999999999999620
Q ss_pred --------------------------------------------------------------------------------
Q 004329 141 -------------------------------------------------------------------------------- 140 (760)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (760)
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence
Q ss_pred --------------ce------------------------------eEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEE
Q 004329 141 --------------KL------------------------------VEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLW 176 (760)
Q Consensus 141 --------------~~------------------------------~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iw 176 (760)
.. ...+.+|...|.+++++.++.++..+..+.+++|
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW 399 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW 399 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence 00 0122356777888888888887777778899999
Q ss_pred eCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCc
Q 004329 177 KGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF 251 (760)
Q Consensus 177 d~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~ 251 (760)
+.. ++++++.. +.+.+.+|.|++. +++|...|.+.+||+ ....+.+...|.+.|++++.+|++ .+++||.|.+
T Consensus 400 n~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 400 NRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred EccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence 844 67777754 3888999999665 899999999999996 456677778999999999999999 9999999999
Q ss_pred EEEEe-----C--Cce--------EEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhh------
Q 004329 252 AKIWK-----D--GVC--------VQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY------ 309 (760)
Q Consensus 252 I~iwd-----~--~~~--------~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~------ 309 (760)
|++|| . ++. .++++.+..|.|+.+||||+ ++++--|.+|+||-+++-+..-++..+..
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 99999 1 222 13445678999999999999 56666699999999998887544432221
Q ss_pred hhcccceEEeccccCceeeecCCCCceee-ccCCCcce---------EEEEeeCCceEEEEEeccc
Q 004329 310 ASELSQYKLCRKKVGGLKLEDLPGLEALQ-IPGTNAGQ---------TKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 310 ~~~~~~~~~~~~~~g~i~~~~l~~~~~l~-~~g~~~g~---------~~~v~~~~~~~~~~w~~~~ 365 (760)
...-+...+..+.+..+++|.+.-.++-. .-+|.|.. ..++..|.++.+-+||...
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 11124667788889999999998666543 34555552 3345557788899998543
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-27 Score=253.17 Aligned_cols=280 Identities=21% Similarity=0.360 Sum_probs=231.5
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|.-||..-..++..|..|.++|+.++|+|.+. +++|+.|-.|+||+..+.. +..++.+|-+.|..+.|++.-+
T Consensus 33 IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-----clftL~GHlDYVRt~~FHheyP- 106 (1202)
T KOG0292|consen 33 IQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-----CLFTLLGHLDYVRTVFFHHEYP- 106 (1202)
T ss_pred eeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-----ehhhhccccceeEEeeccCCCc-
Confidence 45689888999999999999999999999998 9999999999999998554 7888999999999999999988
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc----------------
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK---------------- 141 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~---------------- 141 (760)
+++++|.|-+|+||+.++++++..+.||...|.|..|+ .+.++++|-|.+||+||...
T Consensus 107 ----WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 107 ----WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ----eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 69999999999999999999999999999999999998 56799999999999998531
Q ss_pred ---------------eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCCC
Q 004329 142 ---------------LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPGV 201 (760)
Q Consensus 142 ---------------~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~~ 201 (760)
....+.+|...|..++|+|.-. +++|+.|+.|++|.... ...+..+|...|.++-|+|..
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc
Confidence 1235678999999999999866 78999999999998554 234678999999999999954
Q ss_pred e-EEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEEccCC
Q 004329 202 G-IISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENG 279 (760)
Q Consensus 202 ~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~~g 279 (760)
. ++|.|.|++|++||++. ..++++.......+.++.+|..-+++++.|+-+.+|. +....+.. +.+.+
T Consensus 263 ~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk-------leRErpa~--~v~~n- 332 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK-------LERERPAY--AVNGN- 332 (1202)
T ss_pred ceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE-------EcccCceE--EEcCC-
Confidence 4 99999999999999864 5678888788899999999999555666666677765 11112222 22222
Q ss_pred cEEEEEcCCcEEEEeCCCCeee
Q 004329 280 DIVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 280 ~lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.+...- |..|+.+|+.+.+-.
T Consensus 333 ~LfYvk-d~~i~~~d~~t~~d~ 353 (1202)
T KOG0292|consen 333 GLFYVK-DRFIRSYDLRTQKDT 353 (1202)
T ss_pred EEEEEc-cceEEeeeccccccc
Confidence 233322 888888888875443
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=234.25 Aligned_cols=279 Identities=22% Similarity=0.379 Sum_probs=240.6
Q ss_pred EeEEec-cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCc---cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 11 LSSELR-GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKR---KYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 11 l~~~l~-gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
+.++++ |..+-+-|..|+|||+ |++||.||.|.+|+..+|+.+ ++.....+.-+...|.|+.|+.+.. .+
T Consensus 204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-----Ml 278 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-----ML 278 (508)
T ss_pred hhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-----Hh
Confidence 344444 5677788999999999 999999999999999888643 2333445666899999999999988 69
Q ss_pred EEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec--CCeEEEEECCCeEEEE--ECCceeEEeecCCcCeEEEEEeC
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD--NEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~v~vw--d~~~~~~~~~~~~~~v~~v~~~~ 160 (760)
++|+.||.|++|.+++|.+++.+. .|+..|+|+.|+ +..+++++.|.++++. ..++++..+++|.+-|+...|.+
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence 999999999999999999999987 899999999998 5569999999999998 45799999999999999999999
Q ss_pred CCc-EEEEECCCcEEEEeC--CCceEEeec--CCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceEEEeec---CCC
Q 004329 161 SGE-IVSGSSDTTIKLWKG--KKCAQTFVG--HTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMVG---HTA 230 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~--~~~~~~~~~--h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~~~~~---h~~ 230 (760)
+|. +++++.||+|++|+. ..|..+|+. ..-+|.++...|.+. ++.|....++.+-++.|+.++.+.. ..+
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG 438 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence 988 899999999999994 457777764 456789999888544 9999999999999999999999874 234
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
...+.+.+|.| ++.+.++|+.++.|. .|...+++. |..-|..++-+|... +++-+.||.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 55667789999 999999999999999 888888887 778999999999877 78888999999995
No 53
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=227.21 Aligned_cols=280 Identities=24% Similarity=0.430 Sum_probs=240.0
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
.++++++|.||.+.|..++...... +.++|.|.+.+||.++++. +...+.+|.+.|+|++|++.+. +++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~-----L~l 206 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----CLATYTGHTGSVNSIKFHNSGL-----LLL 206 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-----ceeeecccccceeeEEeccccc-----eEE
Confidence 4788899999999999998876655 9999999999999999887 8889999999999999999887 799
Q ss_pred EEeCCCeEEEEEC------CC------------------------------C----ceEEEEeCCCccEEEEEec--CCe
Q 004329 87 SGGMDTMVLVWDL------GS------------------------------G----EKVQTLQGHKLQVTGVTLD--NED 124 (760)
Q Consensus 87 sgs~dg~I~vwd~------~~------------------------------~----~~~~~l~~h~~~V~~l~~~--~~~ 124 (760)
+++.|++-+||.. .. + .++..+.+|...|.+..|- +..
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence 9999999999962 00 0 1455678999999999885 667
Q ss_pred EEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce---EEeecCCCceEEEEEe
Q 004329 125 IVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA---QTFVGHTDTVRGLSVM 198 (760)
Q Consensus 125 l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~---~~~~~h~~~V~~l~~~ 198 (760)
+++++||.+..+||. +..+..+.+|....+.++-+|..+ +++.+.|.+.++||.+..+ ..|++|++.|+++.|.
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 999999999999987 478889999999999999999888 5699999999999988644 4789999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCC--ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe------cCC
Q 004329 199 PGVGIISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE------HPG 268 (760)
Q Consensus 199 ~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~------~~~ 268 (760)
.+.++++|+.|.+|++||++. .++.++ ...++++.++++..+ .++.--.++.|++|| +|..+..+. |..
T Consensus 367 ~dd~vVSgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 367 TDDRVVSGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred cCCceeecCCCceEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 999999999999999999854 234444 356788999999888 888888999999999 666655553 777
Q ss_pred cEEEEEEccCCc---EEEEEcCCcEEEEeCCCC
Q 004329 269 CVWDAKFLENGD---IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 269 ~v~~v~~~~~g~---lvt~~~dg~I~vw~~~~~ 298 (760)
.|.|++|..+.. +++++-|..+.=|.+...
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999999986654 899999999999998754
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=232.67 Aligned_cols=279 Identities=20% Similarity=0.327 Sum_probs=225.8
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.++..|.||.+.|.|++=+|... ++||+.||.|+|||+.... +...+..|.+.|..+++.. . .+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~-~------~~~t 124 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ-T------SFFT 124 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc-c------ceEE
Confidence 45678899999999999999885 9999999999999998544 7788999999999999987 2 3899
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
++.|.+|+.|.++. .+..++.+ ...+..+..+ ++.+++|+. .|.|||.. .++..+.-....|.++.|+|-..
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 99999999999864 46666653 3455666655 555777765 48899874 78888888888999999999755
Q ss_pred --EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEE
Q 004329 164 --IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 164 --l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~ 236 (760)
|++|..|+.|.+||.++ +++... -...-+.|+|+|+.. |+++++|..++.+|++ ..++....+|.+.|.++.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred hheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 66788999999999764 333222 234567899999666 9999999999999985 567888889999999999
Q ss_pred EeCCC-eEEEEeCCCcEEEEe-CCceEEEEecC---CcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 237 SHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP---GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 237 ~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~---~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|+|.| .+++||.|.+||||. .....+.+-|. ..|.|+.|+.|.+ +++|++|+.||+|.....+.+..+.
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence 99999 999999999999998 33333334343 3899999999999 8899999999999988666554433
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=252.77 Aligned_cols=246 Identities=30% Similarity=0.542 Sum_probs=211.3
Q ss_pred ccccCCCce--EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKEYQ--LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~~~--l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..|++...+ +.+++.+|...|++++|+|++. +++++.|++|+|||+... ....+++.+|...|++++|+|++.
T Consensus 184 ~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~----~~~~~~l~gH~~~v~~~~f~p~g~ 259 (456)
T KOG0266|consen 184 RIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD----GRNLKTLKGHSTYVTSVAFSPDGN 259 (456)
T ss_pred EEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC----CeEEEEecCCCCceEEEEecCCCC
Confidence 456666666 7888899999999999999998 999999999999999422 237788999999999999999995
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCce----eEEeecCCcC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKL----VEFWEAHNAP 152 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~ 152 (760)
++++|+.|++|++||++++++...+.+|...|++++|+ ++.+++++.|+.|++||.... ...+..+...
T Consensus 260 -----~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 260 -----LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred -----EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 69999999999999999999999999999999999997 666999999999999998633 3566666554
Q ss_pred --eEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCce---EEEEEeCCCe-EEEEeCCCeEEEEecC-CceE
Q 004329 153 --IQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTV---RGLSVMPGVG-IISASHDCTIRLWALT-GQVL 222 (760)
Q Consensus 153 --v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V---~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~ 222 (760)
++++.|+|++. +++++.|+.+++||.+ .....+.+|...+ .+...++++. +++|+.|+.|++||.. +..+
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 99999999988 7899999999999965 4667788887753 3334455555 9999999999999975 7788
Q ss_pred EEeecC-CCcEEEEEEeCCC-eEEEEe--CCCcEEEEe
Q 004329 223 MEMVGH-TAIVYSIDSHASG-LIVSGS--EDRFAKIWK 256 (760)
Q Consensus 223 ~~~~~h-~~~v~~v~~~p~~-~l~s~s--~Dg~I~iwd 256 (760)
..+.+| ...+..+.++|.. ++++++ .|+.+++|.
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 889999 8999999999998 888887 799999997
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-25 Score=210.63 Aligned_cols=274 Identities=18% Similarity=0.249 Sum_probs=222.8
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
-|+||+.+++.|.++.+|. |.||+.|.+..+|-..+|+ .+-++.+|.+.|+|+...-+.. .+++|+.|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----rlGty~GHtGavW~~Did~~s~-----~liTGSAD~ 74 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----RLGTYDGHTGAVWCCDIDWDSK-----HLITGSADQ 74 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----eeeeecCCCceEEEEEecCCcc-----eeeeccccc
Confidence 3689999999999999998 9999999999999886676 6788999999999999988877 699999999
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECC------CeEEEEECC---------ceeEEeecCCcCeEEE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVD------STLKRWRKG---------KLVEFWEAHNAPIQTV 156 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~d------g~v~vwd~~---------~~~~~~~~~~~~v~~v 156 (760)
++++||+++|+++..++ ...+|..+.|+ ++.++..+.| +.|.++|++ ++...+..+...++.+
T Consensus 75 t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred eeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 99999999999999988 56788889887 5554444433 458888764 4567777888999999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCCCc---eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCc
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKGKKC---AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAI 231 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~~~~---~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~ 231 (760)
.|.|-+. +++|..||.|..||.++. +..-+.|...|+.++++++.. |+++|.|.+-++||...-.+........+
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 9999887 889999999999997754 334466999999999999776 99999999999999876665555567889
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEE--------------Ee--CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEE
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKI--------------WK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRI 292 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~i--------------wd--~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~v 292 (760)
|++.+++|.. .++.|+.....-| |+ ..+.+..+ .|-++|++++|+|+|+ +.+|+.||.||+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 9999999976 5555543322222 22 11122222 3889999999999999 899999999999
Q ss_pred EeCCCC
Q 004329 293 WTVHSD 298 (760)
Q Consensus 293 w~~~~~ 298 (760)
..++..
T Consensus 314 h~Fd~~ 319 (327)
T KOG0643|consen 314 HHFDSN 319 (327)
T ss_pred EEeccc
Confidence 876653
No 57
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.4e-26 Score=228.30 Aligned_cols=270 Identities=24% Similarity=0.387 Sum_probs=226.8
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccc------------eeeeEe-eCCCCCeEEEEEeCCC
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKY------------HSSKIL-LGHTSFVGPLAWISPN 77 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~------------~~~~~~-~~h~~~V~~l~~~~~~ 77 (760)
...+..|.-.|.||+++|++. .++++.||+|.-|++.++....+ .+...- .+|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 466778999999999999988 99999999999999987763211 111111 3788999999999999
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
. +|++|+.|..|.||+.++.+.++.+++|.+.|.+++|. ...+++++.|+++++|+.. ..+.++-+|.+.|
T Consensus 215 k-----ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 K-----YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred c-----EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 8 79999999999999999999999999999999999997 4459999999999999876 5566788999999
Q ss_pred EEEEEeCCCcEEE-EECCCcEEEEeCCC-ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEee-c--
Q 004329 154 QTVIRIPSGEIVS-GSSDTTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMV-G-- 227 (760)
Q Consensus 154 ~~v~~~~~~~l~t-gs~dg~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~-~-- 227 (760)
..+.....++++| |+.|+++++|++.. ....+.+|.+.+.|++|-.+.+|++||.+|.|.+|++ +.+++.... .
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 9999988888765 55999999999654 4457889999999999999999999999999999996 445554433 1
Q ss_pred ---------CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C----CceEEEEecCCcEEEEEEccCCc-EEEEEc
Q 004329 228 ---------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D----GVCVQSIEHPGCVWDAKFLENGD-IVTACS 286 (760)
Q Consensus 228 ---------h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~----~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~ 286 (760)
+..+|++++..|.. ++++|+.+|.|++|. . -+++..+...+.|++++|+++|+ +++|..
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 22389999999988 999999999999998 2 24556666889999999999999 555543
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=216.34 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=201.2
Q ss_pred CCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
-.+.+..++|+++.. +++++.||++++||+... ..++..++.|...|.++.|++.... .+++++.|++|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~----~~ltsSWD~TiK 130 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRR----IFLTSSWDGTIK 130 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccce----eEEeeccCCceE
Confidence 467899999997655 999999999999996522 3477889999999999999998775 488889999999
Q ss_pred EEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc--EEEEE
Q 004329 96 VWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE--IVSGS 168 (760)
Q Consensus 96 vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~--l~tgs 168 (760)
+|+...++.+.++.+|...|....|+ ++.++++|.||++++||.+ .....+..|...+.|+.|+.-+. ++||+
T Consensus 131 LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC
Confidence 99999999999999999999999997 7779999999999999975 23334889999999999998654 78999
Q ss_pred CCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC
Q 004329 169 SDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 169 ~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
.|+.|+.||++ .++..+.+|.-.|+.+.++|... +++++.|-++|+||.. ...+.+...|+..+..+.|++-.
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFD 290 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccccc
Confidence 99999999954 56778899999999999999544 9999999999999964 34566677899999999999865
Q ss_pred --eEEEEeCCCcEEEEeC
Q 004329 242 --LIVSGSEDRFAKIWKD 257 (760)
Q Consensus 242 --~l~s~s~Dg~I~iwd~ 257 (760)
++++++.|+.++||+.
T Consensus 291 ~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Cceeeecccccceeeecc
Confidence 9999999999999983
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5.4e-26 Score=223.41 Aligned_cols=247 Identities=29% Similarity=0.480 Sum_probs=206.7
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEc-CCCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVC-DNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~-~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
.+||. .++...++.||+++|.+++|. ++.. |+++|.|.++++|..+.+.. .....+...||...|.++...+++
T Consensus 128 riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~-~~~~~~~~~GHk~~V~sVsv~~sg 205 (423)
T KOG0313|consen 128 RIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN-KVKALKVCRGHKRSVDSVSVDSSG 205 (423)
T ss_pred EEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-hhhHHhHhcccccceeEEEecCCC
Confidence 46775 478999999999999988875 4433 99999999999999886542 233444556999999999999998
Q ss_pred CCCCCcEEEEEeCCCeEEEEECC-------------------------CCceEEEEeCCCccEEEEEec-CCeEEEEECC
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLG-------------------------SGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVD 131 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~-------------------------~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~d 131 (760)
. .+++|+.|.+|.+|+.. ++.++.++.+|..+|.++.|+ ...++++++|
T Consensus 206 t-----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwD 280 (423)
T KOG0313|consen 206 T-----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWD 280 (423)
T ss_pred C-----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeeccc
Confidence 8 69999999999999931 123566788999999999998 5669999999
Q ss_pred CeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEeCCCe-
Q 004329 132 STLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVMPGVG- 202 (760)
Q Consensus 132 g~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~~~~~- 202 (760)
.+|+.||+. .....+. ....+.|+.++|... +++|+.|..+++||.+. ..+.+.+|+..|.++.|+|.+.
T Consensus 281 HTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred ceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence 999999975 4444433 356788999999766 77999999999999664 3467889999999999999443
Q ss_pred -EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 203 -IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 203 -l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
|++++.|+++++||++ ..++..+.+|...|.++.|...+.+++||.|.+|+|+.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 9999999999999975 34899999999999999999888999999999999987
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-26 Score=213.01 Aligned_cols=266 Identities=18% Similarity=0.288 Sum_probs=214.5
Q ss_pred EEEEEcC--CCe--EEEEE-----CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 23 RGICVCD--NVG--IATSS-----RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 23 ~~v~~~~--~~~--l~tgs-----~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
.++.|+| +++ +|++. ..|++.|-++..++ ....... ..-...+..++|++.... .+++++.||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s-~d~~D~LfdV~Wse~~e~----~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQS-YDTEDGLFDVAWSENHEN----QVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEe-eecccceeEeeecCCCcc----eEEEEecCce
Confidence 4677886 344 44442 46889998886332 1222222 234678999999998765 5999999999
Q ss_pred EEEEECCC-CceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCC--cEE
Q 004329 94 VLVWDLGS-GEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSG--EIV 165 (760)
Q Consensus 94 I~vwd~~~-~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~--~l~ 165 (760)
+++||... ..++..++.|..+|.++.|+ ...++++|||++|++|+. ...+.++.+|...|....|+|.. .++
T Consensus 85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 99999643 36788899999999999997 444899999999999976 47888999999999999999963 388
Q ss_pred EEECCCcEEEEeCCCc--eEEeecCCCceEEEEEeC-C-CeEEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeC
Q 004329 166 SGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMP-G-VGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 166 tgs~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~-~-~~l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p 239 (760)
++|.|+++++||.+.. ...+..|...|.++.|+. + ..+++|+.|+.|+.||++ ..++..+.+|.-.|+.++|+|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999999996543 234788999999999998 3 339999999999999985 457888899999999999999
Q ss_pred CC--eEEEEeCCCcEEEEe---CCceEEEEe-cCCcEEEEEEccCC--cEEEEEcCCcEEEEeC
Q 004329 240 SG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAKFLENG--DIVTACSDGVTRIWTV 295 (760)
Q Consensus 240 ~~--~l~s~s~Dg~I~iwd---~~~~~~~~~-~~~~v~~v~~~~~g--~lvt~~~dg~I~vw~~ 295 (760)
.. .|++++.|-++|||| ...++.+.. |..-|..+.|++-. .+++++.|+.+.||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 87 999999999999999 334555555 66689999998853 3889999999999984
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=248.80 Aligned_cols=261 Identities=32% Similarity=0.491 Sum_probs=224.4
Q ss_pred CccccCCCceEeEE-eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSE-LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~-l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|+.||..+...+.+ +.||.+.|.++++...+. +++|+.|.++++||..++. +...+.+|.+.|.++...+.
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~stv~~~~~~~~-- 302 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHTSSVRCLTIDPF-- 302 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCCceEEEEEccCc--
Confidence 35788888777777 999999999999986444 9999999999999998887 89999999999999987553
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTV 156 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v 156 (760)
.+++|+.|.+|++|+++++.++..+.+|..+|.++..+++.+++|+.||+|++||. .+++..+.+|...|.++
T Consensus 303 -----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 303 -----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL 377 (537)
T ss_pred -----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence 47889999999999999999999999999999999999999999999999999987 58999999999999999
Q ss_pred EEeCCCcEEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeec-CCCc
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVG-HTAI 231 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~-h~~~ 231 (760)
.+.+...+++|+.|++|++||.. +++..+.+|...+.++.+. +..+++++.|++|++||. +++++..+.+ |...
T Consensus 378 ~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~ 456 (537)
T KOG0274|consen 378 IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG 456 (537)
T ss_pred EecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccccEEEeecccCceeeeeccCCccc
Confidence 88776679999999999999954 4678899999999777665 667999999999999995 6888888888 6789
Q ss_pred EEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEE-ecC-CcEEEEEE
Q 004329 232 VYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-EHP-GCVWDAKF 275 (760)
Q Consensus 232 v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~-~~~-~~v~~v~~ 275 (760)
|..+++. +..+++++.||++++|| .+.+.+.+ .+. ...+.+++
T Consensus 457 v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 457 VSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 9998887 33799999999999999 66666554 333 24444443
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=208.41 Aligned_cols=274 Identities=20% Similarity=0.276 Sum_probs=227.7
Q ss_pred CCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 6 FKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 6 ~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
+++++. +.+++|...|.+|+|+-+|. |++|+.|+++++|+++... +.......+|.+.|-.++|.|..+. .
T Consensus 8 ~~~l~~-r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---~~~~~~~~gh~~svdql~w~~~~~d----~ 79 (313)
T KOG1407|consen 8 FKSLKR-RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---FRKELVYRGHTDSVDQLCWDPKHPD----L 79 (313)
T ss_pred hhhhhh-HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh---hhhhhcccCCCcchhhheeCCCCCc----c
Confidence 334433 67889999999999999998 9999999999999998553 4445567899999999999998875 5
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe-cCCeEEEEECCCeEEEEECCceeE-EeecCCcCeEEEEEeCCC
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL-DNEDIVSSSVDSTLKRWRKGKLVE-FWEAHNAPIQTVIRIPSG 162 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~~~v~~v~~~~~~ 162 (760)
+++++.|.+|++||.+++++........+.+.-... ++++++.++.|..|...|.++... .-......+.-+.|+.++
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN 159 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC
Confidence 999999999999999999999888766666654443 388899999999999998863322 222334556778888666
Q ss_pred c-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEE
Q 004329 163 E-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 163 ~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~ 237 (760)
. ++.....|+|.|.. .-+++..++.|.....||.|+|+++ |++|+.|..+.+||++ --+.+.+..+.-+|+.+.|
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence 6 45555668998877 4467788999999999999999777 9999999999999985 4567778889999999999
Q ss_pred eCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcC
Q 004329 238 HASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD 287 (760)
Q Consensus 238 ~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~d 287 (760)
+.+| +|+++++|..|-|=+ +|..+..+++.++...|+|+|... |+.+++|
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999 999999999999988 899999999999999999999988 6666653
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=8e-26 Score=216.00 Aligned_cols=244 Identities=25% Similarity=0.417 Sum_probs=209.4
Q ss_pred CccccC-CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDF-KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~-~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|+.|+. ...+=...++||++.|..+.|.+|+. ++++|.|.+++.||.++++ .....++|.+.|+++.-+..+.
T Consensus 71 I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~-----~~rk~k~h~~~vNs~~p~rrg~ 145 (338)
T KOG0265|consen 71 IVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK-----RIRKHKGHTSFVNSLDPSRRGP 145 (338)
T ss_pred EEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----eeehhccccceeeecCccccCC
Confidence 345663 34555678889999999999999999 9999999999999999887 6778889999999998444444
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
.++.+|+.||++++||+++...++++. .+..++++.|. ...+++|+-|+.|++||++ ....++.+|.++|+
T Consensus 146 ----~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt 220 (338)
T KOG0265|consen 146 ----QLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTIT 220 (338)
T ss_pred ----eEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCcee
Confidence 368999999999999999888887775 46789999997 6679999999999999985 78889999999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCC------CceEEeecCC----CceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ce
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGK------KCAQTFVGHT----DTVRGLSVMPGVG-IISASHDCTIRLWALTG-QV 221 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~------~~~~~~~~h~----~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~ 221 (760)
.+..+++|. +++-+-|.++++||.+ .++..+.+|. .....++|+|++. +-+|+.|+.+++||... ..
T Consensus 221 ~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE
Confidence 999999988 7799999999999955 3567777754 2345778899777 77899999999999765 78
Q ss_pred EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEE
Q 004329 222 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKI 254 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~i 254 (760)
+..+.||.+.|.++.|+|.. .+.+++.|.+|.+
T Consensus 301 lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 301 LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 88999999999999999999 9999999999876
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=5e-24 Score=220.61 Aligned_cols=241 Identities=33% Similarity=0.573 Sum_probs=204.8
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKR 136 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~v 136 (760)
..+.+|...|.+++|+|++. ++++++.||.|++|++.+++....+..|...+..+.|. ++.+++++.||.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-----~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-----EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 34568999999999999976 68999999999999999988888899999999899997 447999999999999
Q ss_pred EECC--ceeEEeecCCcCeEEEEEeCCCcEE-EEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCC
Q 004329 137 WRKG--KLVEFWEAHNAPIQTVIRIPSGEIV-SGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDC 210 (760)
Q Consensus 137 wd~~--~~~~~~~~~~~~v~~v~~~~~~~l~-tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg 210 (760)
|+.. +....+..|...+.++.+++++.++ +++.++.+++||.. +....+..|...+.+++++|++. +++++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 9986 4777788899999999999997755 55559999999965 45566778999999999999766 55555599
Q ss_pred eEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE-ecCCcEEEEEEccCCcEEEEE
Q 004329 211 TIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 211 ~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~-~~~~~v~~v~~~~~g~lvt~~ 285 (760)
.|++||+. ++.+..+..|...+.++.|+|++ .+++++.|+.|++|| .+..+..+ .|...+.+++|+|++.+++++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999986 67777888899999999999999 899999999999999 46777777 588899999999998855555
Q ss_pred c-CCcEEEEeCCCCeeechh
Q 004329 286 S-DGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 286 ~-dg~I~vw~~~~~~~~~~~ 304 (760)
. ||.|++|++.+++....+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred cCCCcEEEEEcCCceeEEEc
Confidence 4 999999999887665443
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=7.3e-25 Score=214.60 Aligned_cols=285 Identities=16% Similarity=0.227 Sum_probs=239.4
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
+.|+..+.....++.||++.|+|+.|+.+|. ||||..+|.|+||+..++. ....+...-..+.-+.|+|...
T Consensus 89 flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~-----~~~~~~~e~~dieWl~WHp~a~-- 161 (399)
T KOG0296|consen 89 FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-----EQWKLDQEVEDIEWLKWHPRAH-- 161 (399)
T ss_pred EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc-----eEEEeecccCceEEEEeccccc--
Confidence 5799999999999999999999999999999 9999999999999998776 3444545667788899999777
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeec-CCcCeEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEA-HNAPIQT 155 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~-~~~~v~~ 155 (760)
+|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|. +++++++..||+|++|+.. .++..... ......+
T Consensus 162 ---illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 162 ---ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred ---EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 79999999999999999988889999999999998885 7789999999999999875 55555442 2334566
Q ss_pred EEEeCCCc-EEEEECCCcEEEEe--CCCceE--------EeecCCCceEEEEEeC---CCe-EEEEeCCCeEEEEecCCc
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWK--GKKCAQ--------TFVGHTDTVRGLSVMP---GVG-IISASHDCTIRLWALTGQ 220 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~--------~~~~h~~~V~~l~~~~---~~~-l~s~s~dg~I~iwd~~~~ 220 (760)
+.++..+. ++.|+.++.+++-+ .++.+. ....+...+.++.+.| .-. .++|+-||+|.|||+...
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 77776666 56777777777765 333222 2235666666666666 333 788999999999999999
Q ss_pred eEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 221 VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
.++....|...|..+.|.++.+|++++.||.|+.|| +|.++.++. |...|.+++++|+++ +++++.|++.+||+..
T Consensus 319 ~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 319 TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999988999999999999999 999999887 899999999999999 8999999999999874
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=204.50 Aligned_cols=244 Identities=20% Similarity=0.337 Sum_probs=208.3
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
.-|+.....+++++.||...|..++.+.|+. +++|+.|..+.+||+.+++ ....+.+|.+.|+.+.|+.+..
T Consensus 42 rLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-----v~Rr~rgH~aqVNtV~fNeesS-- 114 (307)
T KOG0316|consen 42 RLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-----VDRRFRGHLAQVNTVRFNEESS-- 114 (307)
T ss_pred EeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-----eeeecccccceeeEEEecCcce--
Confidence 4699999999999999999999999987766 9999999999999999987 7788999999999999998887
Q ss_pred CCcEEEEEeCCCeEEEEECCCC--ceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~ 158 (760)
.+++|+.|..+++||.++. ++++.+......|.++...+..+++||.||+++.||++.-...-.-...+|+++.+
T Consensus 115 ---Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~ 191 (307)
T KOG0316|consen 115 ---VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSF 191 (307)
T ss_pred ---EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEe
Confidence 7999999999999999765 78899988899999999999999999999999999998666666666789999999
Q ss_pred eCCCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEE--EEeC-CCeEEEEeCCCeEEEEec-CCceEEEeecCCCc
Q 004329 159 IPSGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGL--SVMP-GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAI 231 (760)
Q Consensus 159 ~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l--~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~ 231 (760)
++++. .++++-|+++++.| .++..+.+++|...-..+ +++. +..+++|++||.+.+||+ +...+..+..|...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 99988 77999999999998 567788899987654333 3333 556999999999999996 56677777777766
Q ss_pred -EEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 232 -VYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 232 -v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.++.++|.- .|+++...+ +..|.
T Consensus 272 ~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 272 IVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eEEeeecccCccceeEecCCc-eecee
Confidence 8999999987 555555443 55564
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=212.75 Aligned_cols=279 Identities=21% Similarity=0.330 Sum_probs=221.4
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCC------------C-CCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDP------------S-DKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~------------~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..+..|++++++-+|++||. ++|||.|-+|+|.|++. + .......+.++..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 56778999999999999999 99999999999999861 1 1122345678889999999999999987
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEe--CCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEe-----ecC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ--GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFW-----EAH 149 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~-----~~~ 149 (760)
+|++|+.|++|+++|.......+.++ ....+|.+++|+ +++++.|....++++||........ ..|
T Consensus 186 -----ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 186 -----ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred -----eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 79999999999999997543322222 345789999997 7779999999999999987544333 368
Q ss_pred CcCeEEEEEeCCCc-EEEEECCCcEEEEe--CCCceEEeec-CC-CceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceE
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSDTTIKLWK--GKKCAQTFVG-HT-DTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVL 222 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~-h~-~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~ 222 (760)
.+.|+++.+++.+. .++|+.||.|++|| .++|++++.. |. ..|.+..|..+++ +++.+.|..+++|.+ +++++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 89999999999998 67999999999999 5678887754 54 5688999998877 889999999999997 67888
Q ss_pred EEeecCC-----CcEEEEEEeCCC-eEEEE-eCCCcEEEEe----CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcE
Q 004329 223 MEMVGHT-----AIVYSIDSHASG-LIVSG-SEDRFAKIWK----DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVT 290 (760)
Q Consensus 223 ~~~~~h~-----~~v~~v~~~p~~-~l~s~-s~Dg~I~iwd----~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I 290 (760)
..+.|-. ..-+...|+... +++.- -..+.+.-|| ....+..+.|.+.+.++.-+|.+. +++|+.|-.+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 8877541 112333455544 44433 3456789999 233455667999999999999999 9999999999
Q ss_pred EEEeCC
Q 004329 291 RIWTVH 296 (760)
Q Consensus 291 ~vw~~~ 296 (760)
|+|-.+
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999765
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.7e-26 Score=225.45 Aligned_cols=275 Identities=19% Similarity=0.313 Sum_probs=223.0
Q ss_pred eEeEEeccCCCCEEEEEEcCCC-eEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNV-GIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~-~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
.....+..|.+.|..+.|-++. .|+||+.|..|++|+...++ .....++.+..+.|+++.|.+++. ++++.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~-----~~iAa 237 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNK-----HVIAA 237 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCc-----eEEee
Confidence 3445677899999999999984 49999999999999998443 456678888899999999999988 58999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEec-C-CeEEEEECCCeEEEEECCceeEEeec-CCcCeEEEEEeCCCcEE
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-N-EDIVSSSVDSTLKRWRKGKLVEFWEA-HNAPIQTVIRIPSGEIV 165 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~-~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~v~~v~~~~~~~l~ 165 (760)
+.|+.+++|++...+...++.+|+..|+++.|. + ..+++|+.|.+++.||+.+....-.. ....+..|+.. ...++
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~ 316 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVI 316 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec-ceeee
Confidence 999999999999999999999999999999996 3 33999999999999999753332211 12334444444 23477
Q ss_pred EEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEee-c----CCCcEEEEEE
Q 004329 166 SGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMV-G----HTAIVYSIDS 237 (760)
Q Consensus 166 tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~-~----h~~~v~~v~~ 237 (760)
+|..|++||+||.+. +......+ +.|+++..++++. +.+++.|.++.+.|+++..+.... . .....+.+.|
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 899999999999654 44455555 4999999999877 999999999999998776554432 1 2334788999
Q ss_pred eCCC-eEEEEeCCCcEEEEe--CCceEEEEe--cCC-cEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 238 HASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPG-CVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 238 ~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~--~~~-~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
||++ ++++||.||.|+||+ ++++...+. +.. .|++++|+|.|. +++++.++.+++|.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999 999999999999999 677766665 333 699999999999 99999999999994
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-23 Score=202.03 Aligned_cols=280 Identities=18% Similarity=0.266 Sum_probs=227.0
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
.+++..+.+..-.+.|.++.|+++|. +++++.|.++++||..++. ..+++..++..|..++|..... .+
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~skkyG~~~~~Fth~~~-----~~ 71 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTINSKKYGVDLACFTHHSN-----TV 71 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEeecccccccEEEEecCCc-----eE
Confidence 45677788888889999999999999 9999999999999999777 6777888888999999988776 35
Q ss_pred EEEeC--CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEe
Q 004329 86 VSGGM--DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 86 ~sgs~--dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~ 159 (760)
+.++. |.+|+..++.+.+.++.+.||...|.+++.+ ++.+++++.|++|++||++ ++...+.. ..-..+++.
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfD 149 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFD 149 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeEC
Confidence 66665 8899999999999999999999999999998 7779999999999999987 33333333 333457899
Q ss_pred CCCcE-EEEECCCcEEEEeCCC----ceEEee---cCCCceEEEEEeCCCe-EEEEeCCCeEEEEe-cCCceEEEeecCC
Q 004329 160 PSGEI-VSGSSDTTIKLWKGKK----CAQTFV---GHTDTVRGLSVMPGVG-IISASHDCTIRLWA-LTGQVLMEMVGHT 229 (760)
Q Consensus 160 ~~~~l-~tgs~dg~i~iwd~~~----~~~~~~---~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd-~~~~~~~~~~~h~ 229 (760)
|+|.+ +++...+.|++||.+. +..++. +.....+.+.|+|+|+ ++.+...+.+++.| .+|..+.++.++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 99994 5666666999999664 334443 3467789999999888 88888999999999 6899888888775
Q ss_pred CcE---EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 230 AIV---YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 230 ~~v---~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
..- .+.+|.|++ ++++|+.||+|.+|+ ++..+..+. +.+++.++.|+|... ...+.+..+.+|-....+
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~-mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA-MFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee-eeeecCceEEEEeccccc
Confidence 433 677899999 999999999999999 777777776 456999999999765 333445678888766443
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-25 Score=238.64 Aligned_cols=291 Identities=18% Similarity=0.286 Sum_probs=207.7
Q ss_pred CCCceEeEEec-cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCc-----cceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 6 FKEYQLSSELR-GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKR-----KYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 6 ~~~~~l~~~l~-gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
+......+.+. +|.+.|.++.|++||+ ||+||.||.||||.+...+.. ...+........+.+..+.-++...
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 33445567788 8999999999999999 999999999999998742210 0000000000001111111111000
Q ss_pred CCCCcEEEEEeCCCeEEEEECC----CCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC--ceeEEeecCCc
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLG----SGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNA 151 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~----~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~ 151 (760)
.-.....-.+.....+ +.+.. ..+++..+.||.+.|..+.|+ +++|+++|.|.+|++|+++ .++..| .|..
T Consensus 333 ~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hnd 410 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHND 410 (712)
T ss_pred cccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCC
Confidence 0000012222222332 22221 236788899999999999999 7889999999999999886 566655 6999
Q ss_pred CeEEEEEeCC--CcEEEEECCCcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEee-
Q 004329 152 PIQTVIRIPS--GEIVSGSSDTTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMV- 226 (760)
Q Consensus 152 ~v~~v~~~~~--~~l~tgs~dg~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~- 226 (760)
-|+|++|+|- ..|++||-||.+|+|++.. .+..+..-.+-|+++|+.|+|+ .+.|+.+|.+++|+..+..+..-.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 9999999994 3499999999999999654 4445555668899999999888 889999999999998765443311
Q ss_pred ---------cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeC--CceEEEEe---cCCcEEEEEEccCCc-EEEEEcCCc
Q 004329 227 ---------GHTAIVYSIDSHASG--LIVSGSEDRFAKIWKD--GVCVQSIE---HPGCVWDAKFLENGD-IVTACSDGV 289 (760)
Q Consensus 227 ---------~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~--~~~~~~~~---~~~~v~~v~~~~~g~-lvt~~~dg~ 289 (760)
.|. .|+++.+.|.. .+++.+.|..|||+|. ..++..++ ....-....|+.||+ |++++.|..
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 133 89999999877 6888899999999994 67777776 223557788999999 999999999
Q ss_pred EEEEeCCCCe
Q 004329 290 TRIWTVHSDK 299 (760)
Q Consensus 290 I~vw~~~~~~ 299 (760)
|++|+.+...
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999987554
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=221.42 Aligned_cols=264 Identities=23% Similarity=0.353 Sum_probs=219.8
Q ss_pred CCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 19 EDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 19 ~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
.+.|.+++|+|... +++.|. -.+.||+..+.. ..+.+......|.++.|..||. ++++|+..|.|++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~-----~~k~~srFk~~v~s~~fR~DG~-----LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRS-----VRKTFSRFKDVVYSVDFRSDGR-----LLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhh-----hhhhHHhhccceeEEEeecCCe-----EEEccCCcCcEEE
Confidence 46899999998654 555554 478999987544 4455666788999999999998 7899999999999
Q ss_pred EECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc--EEEEEC
Q 004329 97 WDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE--IVSGSS 169 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~ 169 (760)
+|..+...++.+.+|+.+|..+.|+ +..+++|+.|+.+++||.. .....+.+|++.|.|.+++|.+. +++|+.
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 9987766778899999999999986 4449999999999999986 33446789999999999999755 789999
Q ss_pred CCcEEEEeCCCc-eE-EeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-Cce-EEEeecCCCcEEEEEEeCCC-eEE
Q 004329 170 DTTIKLWKGKKC-AQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQV-LMEMVGHTAIVYSIDSHASG-LIV 244 (760)
Q Consensus 170 dg~i~iwd~~~~-~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~-~~~~~~h~~~v~~v~~~p~~-~l~ 244 (760)
||.|++||++.. .. .--.|..+|.++.+.|++.++.......+++||+. |.. +..+..|...|+|+.+..++ .|+
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 999999997754 22 23359999999999998776555666789999975 544 44445599999999999998 999
Q ss_pred EEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEE
Q 004329 245 SGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIW 293 (760)
Q Consensus 245 s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw 293 (760)
++|-|+.|++|| +.+.+..+..+++|.+++.+|+++ ++.|.+||.+.+-
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 999999999999 667888889999999999999988 9999999988765
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-23 Score=190.67 Aligned_cols=284 Identities=17% Similarity=0.262 Sum_probs=221.9
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCC------CC----CCccceeeeEeeCCCCCeEEEEEeC
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLD------PS----DKRKYHSSKILLGHTSFVGPLAWIS 75 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~------~~----~~~~~~~~~~~~~h~~~V~~l~~~~ 75 (760)
+.|+.+..|. .+..|++++|+|.|. .+.||..++.||-... .+ ..++....+..+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3456666665 567899999999999 8889999999987532 11 1222333445577999999999999
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEECCCCce-----EEEEeCCCccEEEEEec-----CCeEEEEECCCeEEEE--EC--Cc
Q 004329 76 PNEEFPEGGLVSGGMDTMVLVWDLGSGEK-----VQTLQGHKLQVTGVTLD-----NEDIVSSSVDSTLKRW--RK--GK 141 (760)
Q Consensus 76 ~~~~~~~~~l~sgs~dg~I~vwd~~~~~~-----~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~v~vw--d~--~~ 141 (760)
.+. ++++|+.|.+|++.-.....+ -..+.-|.+.|..++|- ++.++....-|..++| |- +.
T Consensus 100 ~ge-----liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 100 CGE-----LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred ccC-----eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 998 799999999999987654332 23466799999999993 4445555555555555 54 47
Q ss_pred eeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeec-------CCCceEEEEEeCCCe-EEEEeCCCe
Q 004329 142 LVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVG-------HTDTVRGLSVMPGVG-IISASHDCT 211 (760)
Q Consensus 142 ~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~-------h~~~V~~l~~~~~~~-l~s~s~dg~ 211 (760)
..+.+.+|.+.|.++---..-.+++|+.|.+|++||++ .++.++.. ....|.++++.|.++ +++|-.|..
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 88889999999988754444458999999999999965 44554432 236799999999777 889999999
Q ss_pred EEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEE------EEecCCcEEEEEEccCCc-E
Q 004329 212 IRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQ------SIEHPGCVWDAKFLENGD-I 281 (760)
Q Consensus 212 I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~------~~~~~~~v~~v~~~~~g~-l 281 (760)
..+||++ ++.++.+..|...|.|+.|+|.. ++.+++.|..|++-| .+.... .-+|...+..+.|+|..- +
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf 334 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF 334 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcccee
Confidence 9999987 56789999999999999999999 999999999999999 443322 224899999999999876 9
Q ss_pred EEEEcCCcEEEEeCC
Q 004329 282 VTACSDGVTRIWTVH 296 (760)
Q Consensus 282 vt~~~dg~I~vw~~~ 296 (760)
++.+.|.++.+|.+.
T Consensus 335 isssadkt~tlwa~~ 349 (350)
T KOG0641|consen 335 ISSSADKTATLWALN 349 (350)
T ss_pred eeccCcceEEEeccC
Confidence 999999999999865
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=206.91 Aligned_cols=253 Identities=20% Similarity=0.290 Sum_probs=197.1
Q ss_pred cCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 17 GHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
.-++.|.+++|+|... ++.||.||+||+|+++.... . ..+....|.++|.+++|+.++. .+++|+.|+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--~-~~ka~~~~~~PvL~v~Wsddgs-----kVf~g~~Dk~~ 96 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--L-VPKAQQSHDGPVLDVCWSDDGS-----KVFSGGCDKQA 96 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc--c-cchhhhccCCCeEEEEEccCCc-----eEEeeccCCce
Confidence 4578899999999444 67999999999999985321 1 2356678999999999999997 59999999999
Q ss_pred EEEECCCCceEEEEeCCCccEEEEEecCC----eEEEEECCCeEEEEECCcee--EEeecCCcCeEEEEEeCCCcEEEEE
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNE----DIVSSSVDSTLKRWRKGKLV--EFWEAHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l~~~~~----~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~v~~v~~~~~~~l~tgs 168 (760)
++||+.++ .+..+..|..+|.++.|-++ .|++||||++++.||++... .++.- ...+.++... ...++++.
T Consensus 97 k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~-~pm~vVat 173 (347)
T KOG0647|consen 97 KLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL-YPMAVVAT 173 (347)
T ss_pred EEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc-CceeEEEe
Confidence 99999999 45667789999999999632 38999999999999997433 33322 3344444332 12367899
Q ss_pred CCCcEEEEeCCCceEEeecCCC----ceEEEEEeCCCe-EEEEeCCCeEEEEecCC---ceEEEeecCCC---------c
Q 004329 169 SDTTIKLWKGKKCAQTFVGHTD----TVRGLSVMPGVG-IISASHDCTIRLWALTG---QVLMEMVGHTA---------I 231 (760)
Q Consensus 169 ~dg~i~iwd~~~~~~~~~~h~~----~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~---~~~~~~~~h~~---------~ 231 (760)
.++.|.+|++......++.+.+ .+++++..++.. ++.|+-+|.+.+..++. ..-..++.|.. .
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999998877766665544 478999888665 89999999999998753 33445555542 4
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE-EecCCcEEEEEEccCCc
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS-IEHPGCVWDAKFLENGD 280 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~-~~~~~~v~~v~~~~~g~ 280 (760)
|++|+|+|.. .|+++|.||+..+|| ....+.+ -.|+.+|++.+|+.+|.
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 6788999976 999999999999999 3344444 34889999999999999
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=8.9e-26 Score=228.55 Aligned_cols=278 Identities=23% Similarity=0.388 Sum_probs=219.8
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-CceEEEEeCCCccEEEEEec--CCeEEEEECCC
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS 132 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg 132 (760)
.....+.+|...|+++.|.|.... ++++++.|+.|+||++-. +++++++.+|..+|..++|+ +..+++++.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~h----LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGH----LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeeccCCccccchhhhccceee----EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 356788999999999999995543 699999999999999976 89999999999999999998 66699999999
Q ss_pred eEEEEECCceeEEeecC-CcCeEEEEEeCCCc--EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEE
Q 004329 133 TLKRWRKGKLVEFWEAH-NAPIQTVIRIPSGE--IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISA 206 (760)
Q Consensus 133 ~v~vwd~~~~~~~~~~~-~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~ 206 (760)
.+++||++........| ...+.|+.+.|++. +++|+.|+.|+.||++ +.++.+..|-+.|..+.|.+++. ++++
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999987554444444 34678999999874 8899999999999965 46678888999999999999766 9999
Q ss_pred eCCCeEEEEecCCceEEEee--cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeCCce-----EEEEe---cCCcEEEEEE
Q 004329 207 SHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGVC-----VQSIE---HPGCVWDAKF 275 (760)
Q Consensus 207 s~dg~I~iwd~~~~~~~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~-----~~~~~---~~~~v~~v~~ 275 (760)
+.|++++||+..-.....+. .+.....++..+|++ ++++-+.|..|.++..... ...+. ..+.-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999997544333332 334466788999999 9999999999999982221 11222 3557788999
Q ss_pred ccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCC
Q 004329 276 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 354 (760)
Q Consensus 276 ~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~ 354 (760)
||||. +++|.+||.+.+||.++-+++..+. .....++.+.+|+--.-+|+..+=
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------------------------ah~~~ci~v~wHP~e~Skvat~~w 495 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------------------------AHDQPCIGVDWHPVEPSKVATCGW 495 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccc-------------------------cCCcceEEEEecCCCcceeEeccc
Confidence 99999 8899999999999999988665433 223344455566555556666665
Q ss_pred ceEEEEEe
Q 004329 355 NGVAYSWD 362 (760)
Q Consensus 355 ~~~~~~w~ 362 (760)
+|.+.+|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 66777774
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=218.58 Aligned_cols=281 Identities=18% Similarity=0.248 Sum_probs=216.0
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
+..--.|++|+..|.++++.|.|- |+|||.|.+|++||+..-. ......+.+ ......|+++.|++.+. .|+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~fr~l~P~E~h~i~sl~ys~Tg~-----~iL 230 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRSFRQLQPCETHQINSLQYSVTGD-----QIL 230 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccc-ccchhhhccCcccccccceeeecCCCC-----eEE
Confidence 344456889999999999999998 9999999999999997332 222222333 33456899999999988 477
Q ss_pred EEeCCCeEEEEECCCCceEEE------------EeCCCccEEEEEec---CCeEEEEECCCeEEEEECC---ceeEEee-
Q 004329 87 SGGMDTMVLVWDLGSGEKVQT------------LQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG---KLVEFWE- 147 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~------------l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~---~~~~~~~- 147 (760)
+.+.....+++|-...+.... -+||...++|-+|+ .+.+++++.||++++||.. +....++
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 777778899999764433322 35899999999998 3449999999999999875 2333332
Q ss_pred ----cCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC-----ceEEeecCCC--ceEEEEEeCCCe-EEEEeCCCeEEE
Q 004329 148 ----AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK-----CAQTFVGHTD--TVRGLSVMPGVG-IISASHDCTIRL 214 (760)
Q Consensus 148 ----~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~-----~~~~~~~h~~--~V~~l~~~~~~~-l~s~s~dg~I~i 214 (760)
+..-+++.++|++++. +++|+.||.|.+|+.+. ....-..|.. .|+||.|++++. |++-+.|+++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3355789999999998 78999999999999543 2334456877 899999999777 999999999999
Q ss_pred EecC--CceEEEeecC--CCcEEEEEEeCCC-eEEEEe------CCCcEEEEe--CCceEEEEecC-CcEEEEEEccCCc
Q 004329 215 WALT--GQVLMEMVGH--TAIVYSIDSHASG-LIVSGS------EDRFAKIWK--DGVCVQSIEHP-GCVWDAKFLENGD 280 (760)
Q Consensus 215 wd~~--~~~~~~~~~h--~~~v~~v~~~p~~-~l~s~s------~Dg~I~iwd--~~~~~~~~~~~-~~v~~v~~~~~g~ 280 (760)
||++ .+++....+- .-.-+.++|+|+. ++++|+ ..|.+.+|| +-..++.+..+ .+|..+.|+|.=.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 9985 3555555543 2356788999999 777775 357899999 55667777644 4999999999655
Q ss_pred -EEEEEcCCcEEEEeC
Q 004329 281 -IVTACSDGVTRIWTV 295 (760)
Q Consensus 281 -lvt~~~dg~I~vw~~ 295 (760)
+++|+.||.++||--
T Consensus 471 Qi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYYD 486 (641)
T ss_pred heeeecCCCceEEEEC
Confidence 999999999998753
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-25 Score=217.65 Aligned_cols=242 Identities=21% Similarity=0.418 Sum_probs=197.0
Q ss_pred ccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCC
Q 004329 4 IDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 82 (760)
.|.. +++.+++.||..+|..+.|+||.+ |++|+.|..+++||..++..... .-.+|...+.+++|.|++.
T Consensus 255 ~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~----y~~~~~~S~~sc~W~pDg~---- 325 (519)
T KOG0293|consen 255 YDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL----YPSGLGFSVSSCAWCPDGF---- 325 (519)
T ss_pred cCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh----cccCcCCCcceeEEccCCc----
Confidence 3444 899999999999999999999999 99999999999999998873211 1133568899999999998
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCC-CccEEEEEec--CCeEEEEECCCeEEEEECCceeEE-eecCCcCeEEEEE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGH-KLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEF-WEAHNAPIQTVIR 158 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~~~v~~v~~ 158 (760)
.+++|+.|++|..||++ |+.....++- ...|.+++.. +.++++.+.|..+++++....... +.....+|+++..
T Consensus 326 -~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 326 -RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred -eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEE
Confidence 58999999999999996 4444444443 3568888774 777999999999999987643333 5556778999999
Q ss_pred eCCCcE-EEEECCCcEEEEeCCC--ceEEeecCCCc--eEEEEEeC--CCeEEEEeCCCeEEEEe-cCCceEEEeecCCC
Q 004329 159 IPSGEI-VSGSSDTTIKLWKGKK--CAQTFVGHTDT--VRGLSVMP--GVGIISASHDCTIRLWA-LTGQVLMEMVGHTA 230 (760)
Q Consensus 159 ~~~~~l-~tgs~dg~i~iwd~~~--~~~~~~~h~~~--V~~l~~~~--~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~ 230 (760)
+.++++ ++.-.+..+++||... .++.+.||... +-.-||-- +..+++||+|+.|+||+ .+|+++..+.||..
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 999994 5777899999999664 45677888754 33334443 23489999999999999 57999999999999
Q ss_pred cEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 231 IVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 231 ~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
.|+|++|+|.. ++|++|.||+||||.
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999999988 999999999999997
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-24 Score=224.81 Aligned_cols=263 Identities=22% Similarity=0.374 Sum_probs=216.3
Q ss_pred EEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce
Q 004329 25 ICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK 104 (760)
Q Consensus 25 v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 104 (760)
+.|+..+.|+.| ....|++|+..++. .......+...|+++.|++++. +|++|..+|.|.|||..+.+.
T Consensus 183 ldWss~n~laVa-lg~~vylW~~~s~~-----v~~l~~~~~~~vtSv~ws~~G~-----~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 183 LDWSSANVLAVA-LGQSVYLWSASSGS-----VTELCSFGEELVTSVKWSPDGS-----HLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred hhcccCCeEEEE-ecceEEEEecCCCc-----eEEeEecCCCceEEEEECCCCC-----EEEEeecCCeEEEEehhhccc
Confidence 456655444444 45689999988765 2333333489999999999998 699999999999999999999
Q ss_pred EEEEeC-CCccEEEEEecCCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 004329 105 VQTLQG-HKLQVTGVTLDNEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK 179 (760)
Q Consensus 105 ~~~l~~-h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~ 179 (760)
+..+.+ |...|-+++|++..+.+|+.|+.|..+|.+ .....+.+|...|+.+.|++++. +++|+.|+.+.+||..
T Consensus 252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 999998 999999999999999999999999999975 22224789999999999999988 8899999999999953
Q ss_pred --CceEEeecCCCceEEEEEeC--CCeEEEE--eCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEE--EeCCC
Q 004329 180 --KCAQTFVGHTDTVRGLSVMP--GVGIISA--SHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS--GSEDR 250 (760)
Q Consensus 180 --~~~~~~~~h~~~V~~l~~~~--~~~l~s~--s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s--~s~Dg 250 (760)
.+...+..|...|..++|+| .+.||+| +.|+.|++||...............|.++.|++.. .+++ |..++
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 56778899999999999999 4457776 56999999997544433344567899999999988 4444 44677
Q ss_pred cEEEEe--CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 251 FAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 251 ~I~iwd--~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
.|.||+ ....+..+ .|...|..++++|||. +++|+.|.++++|++-+.
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 899999 44444444 4999999999999999 999999999999998775
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.4e-25 Score=228.36 Aligned_cols=380 Identities=22% Similarity=0.329 Sum_probs=269.1
Q ss_pred CCCCEE---EEEEc-CCCe-EEEEECCCeEEEEeCCCCCCcc-ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 18 HEDDVR---GICVC-DNVG-IATSSRDRTVRFWSLDPSDKRK-YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 18 H~~~V~---~v~~~-~~~~-l~tgs~Dg~i~iWd~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
|...|. .+..+ |+++ |+|||+||.|++|+........ ......++.|...|+.++...+++ .+++++.|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-----tlIS~SsD 94 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-----TLISASSD 94 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-----ceEEecCC
Confidence 455555 34444 5666 9999999999999987443211 223567788999999999988886 49999999
Q ss_pred CeEEEEECCCC--ceEEEEeCCCccEEEEEe-c--CCeEEEEECCCeEEEEECCce----e--------EEee-cCCcCe
Q 004329 92 TMVLVWDLGSG--EKVQTLQGHKLQVTGVTL-D--NEDIVSSSVDSTLKRWRKGKL----V--------EFWE-AHNAPI 153 (760)
Q Consensus 92 g~I~vwd~~~~--~~~~~l~~h~~~V~~l~~-~--~~~l~sgs~dg~v~vwd~~~~----~--------~~~~-~~~~~v 153 (760)
-+|++|+...+ -+..++..|...|.|+++ . +..+++|+-|+.|.+||.+.. + ..+. ++..+|
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 99999999877 577888999999999999 3 556999999999999997622 1 1222 788899
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCCCce--EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecC
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGKKCA--QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGH 228 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~--~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h 228 (760)
.+++..+.|. +++|+..+.+++||.+.+. ..+.+|++.|+.+..++++. ++++|.||+|++||+. .+++.++..|
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 9999999988 7789999999999976554 46779999999999999776 9999999999999985 5788999999
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C-CceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-GVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~-~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
...|+++..+|+- .+++|+.||.|..=| + ..+....+...+|..+..+.... +-+++.|+.|+-|.......+..
T Consensus 255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~ 334 (735)
T KOG0308|consen 255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSV 334 (735)
T ss_pred cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccccccc
Confidence 9999999999887 999999999999888 2 34445555666788887765444 77888999999998875543221
Q ss_pred hh-hhhhhhcccceEEeccccCceeeec--------CCCCceeeccCCCcceEEEEeeCCceEEEEEeccccceeeccce
Q 004329 304 LE-LEAYASELSQYKLCRKKVGGLKLED--------LPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374 (760)
Q Consensus 304 ~~-~~~~~~~~~~~~~~~~~~g~i~~~~--------l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~W~~~g~~ 374 (760)
.. ...+. .+......+ ++|...+....--.....++..+..+.+..||+-.. .+++++
T Consensus 335 s~~~~~~~-----------T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~--~~~~d~ 401 (735)
T KOG0308|consen 335 SGDLDFFS-----------TDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC--VKVEDF 401 (735)
T ss_pred CCCCCccc-----------ccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee--eehhhc
Confidence 11 01111 111111112 233333322212234456677777788889996443 223332
Q ss_pred eeCCCCCCCcccccC-----ccceEE---EEeecCCCCCccccCccCCCChHHHHHHHHHh
Q 004329 375 VDGPDDGMNRPILDG-----IQYDYV---FDVDIGDGEPTRKLPYNRSDNPYDAADKWLLK 427 (760)
Q Consensus 375 ~~~~~~~~~~~~~~g-----~~yd~v---f~vdi~~g~~~~~l~yn~~~~p~~~a~~f~~~ 427 (760)
+ +..|+. -.--|+ |.||..-|....+| +|.-+..|+=+.++
T Consensus 402 ----g----k~~FE~iv~k~~~~v~IP~WftVd~k~GmL~VtL----de~~~~saevy~kd 450 (735)
T KOG0308|consen 402 ----G----KVDFEEIVKKLFKQVYIPSWFTVDLKLGMLTVTL----DEPDCFSAEVYSKD 450 (735)
T ss_pred ----c----cccHHHHHHhhcceEeecccEEEeeccCceEEEe----CCcchhhheeeHhh
Confidence 1 112221 111223 89999888766555 33445555544443
No 79
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=2.4e-23 Score=246.84 Aligned_cols=229 Identities=19% Similarity=0.286 Sum_probs=192.1
Q ss_pred CCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
+...|.+++|++. +. |++++.||+|++||+.+++ ....+.+|.+.|++++|+|.... +|++|+.||.|+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----~~~~~~~H~~~V~~l~~~p~~~~----~L~Sgs~Dg~v~ 601 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----LVTEMKEHEKRVWSIDYSSADPT----LLASGSDDGSVK 601 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----EEEEecCCCCCEEEEEEcCCCCC----EEEEEcCCCEEE
Confidence 3468999999874 34 9999999999999998654 56677899999999999974432 699999999999
Q ss_pred EEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCc---eeEEeecCCcCeEEEEEeCCCcEEEEEC
Q 004329 96 VWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPIQTVIRIPSGEIVSGSS 169 (760)
Q Consensus 96 vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v~~v~~~~~~~l~tgs~ 169 (760)
+||+.++..+..+..+ ..++++.|. +..+++|+.||.|++||... ....+.+|...|.++.|.+.+.+++++.
T Consensus 602 iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 602 LWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSST 680 (793)
T ss_pred EEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEEC
Confidence 9999999988888755 678999884 56799999999999999853 4567789999999999986666999999
Q ss_pred CCcEEEEeCC--------CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEE-------------ee
Q 004329 170 DTTIKLWKGK--------KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLME-------------MV 226 (760)
Q Consensus 170 dg~i~iwd~~--------~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~-------------~~ 226 (760)
|++|++||.. ..++.+.+|...+..+++++++. +++|+.|+.|++|+... ..+.. ..
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 9999999965 35678889999999999999655 99999999999999642 22211 12
Q ss_pred cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.|...|.+++|+|++ .+++|+.||.|+||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 355679999999999 999999999999997
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.4e-23 Score=199.20 Aligned_cols=255 Identities=18% Similarity=0.273 Sum_probs=200.4
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
-++.|++|.|+|.+. |+.+|.||++++|+..... ......|..++.+++|.++.. +++|+.||.|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d~~~------~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFADEST------IVTGGLDGQVRR 79 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccCCce------EEEeccCceEEE
Confidence 468899999998777 9999999999999998542 334456899999999998765 999999999999
Q ss_pred EECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEe-ecCCcCeEEEEEeCCCcEEEEECCCcE
Q 004329 97 WDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFW-EAHNAPIQTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~v~~v~~~~~~~l~tgs~dg~i 173 (760)
+|+.+++.. .+..|...|.|+.+. .+.+++||||++|++||.+...... ......|.++... +++|++|+.|..+
T Consensus 80 ~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~-g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 80 YDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS-GNRLVVGTSDRKV 157 (323)
T ss_pred EEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc-CCEEEEeecCceE
Confidence 999887654 456699999999998 7789999999999999997432222 1223467777655 3568999999999
Q ss_pred EEEeCCCceEEee----cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-----eEEEeecCC---------CcEEE
Q 004329 174 KLWKGKKCAQTFV----GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-----VLMEMVGHT---------AIVYS 234 (760)
Q Consensus 174 ~iwd~~~~~~~~~----~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-----~~~~~~~h~---------~~v~~ 234 (760)
.+||++++...++ .-+-.++++++.|++. +++++-||.|.+=.++.. ....+..|. -+|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 9999887655443 2445689999999555 999999999988665322 334455553 27899
Q ss_pred EEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEc
Q 004329 235 IDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACS 286 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~ 286 (760)
++|+|-. .|+|||.||.|.+|| ..+.+..+. .+..|.+++|+.+|. ++++++
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999986 999999999999999 444444444 556899999999999 666654
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.4e-22 Score=201.03 Aligned_cols=291 Identities=13% Similarity=0.218 Sum_probs=233.4
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeC-CCCCeEEEEEeCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLG-HTSFVGPLAWISPNEE 79 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~ 79 (760)
-+||++........+.....|....|+|.+. ++.....|.+..|+++.+.. ......+.. .+..|.|++|.++++
T Consensus 183 SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l--~k~~~~fek~ekk~Vl~v~F~engd- 259 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL--VKRQGIFEKREKKFVLCVTFLENGD- 259 (626)
T ss_pred chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce--EEEeeccccccceEEEEEEEcCCCC-
Confidence 3688888777777777888899999999887 55445568999999986552 122223333 357899999999998
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC------------------
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG------------------ 140 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~------------------ 140 (760)
+++|..+|.|.||+..+.+..+....|.+.|.+++.- ++.|++|+.|..|..||-.
T Consensus 260 -----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRt 334 (626)
T KOG2106|consen 260 -----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRT 334 (626)
T ss_pred -----EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeE
Confidence 9999999999999998888777777999999999986 8889999999999999621
Q ss_pred ------------------------ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEE
Q 004329 141 ------------------------KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGL 195 (760)
Q Consensus 141 ------------------------~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l 195 (760)
.......+|....+.++.+|+.. +++++.|+.+++|+..+..-+ ..-.+++.++
T Consensus 335 v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt-~~~~d~~~~~ 413 (626)
T KOG2106|consen 335 VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWT-KIIEDPAECA 413 (626)
T ss_pred EecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEE-EEecCceeEe
Confidence 00112346778889999999755 999999999999994443332 2346789999
Q ss_pred EEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---CCceEEEEe--cCCc
Q 004329 196 SVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE--HPGC 269 (760)
Q Consensus 196 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~--~~~~ 269 (760)
.|+|.+.++.|+..|...+.|.+.+.+.++.....++.++.++|+| +||.|+.|+.|+||. .+....... +..+
T Consensus 414 ~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ 493 (626)
T KOG2106|consen 414 DFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP 493 (626)
T ss_pred eccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence 9999889999999999999998887777777678999999999999 999999999999997 555555444 3469
Q ss_pred EEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 270 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 270 v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
|+.+.|++|++ +.+-+.|-.|..|.....+..
T Consensus 494 ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 494 ITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred eEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 99999999999 677777999999955444443
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=8.2e-25 Score=203.50 Aligned_cols=239 Identities=22% Similarity=0.378 Sum_probs=202.3
Q ss_pred cCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 5 DFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+-.+..-+.+|.||.+.|.+.+...+.. -++++.|-+.++||.-++. .++.+ .|..-|.+++|+.+..
T Consensus 45 ~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd-----elhsf-~hkhivk~~af~~ds~----- 113 (334)
T KOG0278|consen 45 NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD-----ELHSF-EHKHIVKAVAFSQDSN----- 113 (334)
T ss_pred cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh-----hhhhh-hhhheeeeEEecccch-----
Confidence 3456677899999999999999988877 8999999999999998886 33333 4888999999999988
Q ss_pred EEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~ 158 (760)
+|++|+.+..++|||++.. .+...+.+|.+.|..+-|. ++.+++.+.|++||+||.+ ..++.+. ...+|+++.+
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence 5999999999999999765 4567789999999999885 7779999999999999975 4444443 4568999999
Q ss_pred eCCCcEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEe-ecCCCcEE
Q 004329 159 IPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEM-VGHTAIVY 233 (760)
Q Consensus 159 ~~~~~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~-~~h~~~v~ 233 (760)
+++|++++-...+.|.+||... .++.++ -...|.+...+|+.. +++|++|..++.||. +|+.+..+ .+|.++|.
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 9999999999999999999654 333332 345688889999655 999999999999995 67777775 89999999
Q ss_pred EEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 234 SIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 234 ~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
|+.|+|+| ..++|++||+||+|.
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEE
Confidence 99999999 999999999999998
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.2e-23 Score=216.85 Aligned_cols=358 Identities=21% Similarity=0.299 Sum_probs=237.3
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE--CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS--RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs--~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..+|....+..+.+..|..+++|++|+++|+ ++||- ....+++|++.... ....+..|+..|+|++|+|.++
T Consensus 61 Vlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-----vVAEfvdHKY~vtcvaFsp~~k 135 (1080)
T KOG1408|consen 61 VLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-----VVAEFVDHKYNVTCVAFSPGNK 135 (1080)
T ss_pred EEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-----chhhhhhccccceeeeecCCCc
Confidence 4567777777788888999999999999999 88874 67789999998554 4556677888888888888766
Q ss_pred CC-------------------------------------CCc-EEEEEeCCCeEEEEECCCCceEE--------------
Q 004329 79 EF-------------------------------------PEG-GLVSGGMDTMVLVWDLGSGEKVQ-------------- 106 (760)
Q Consensus 79 ~~-------------------------------------~~~-~l~sgs~dg~I~vwd~~~~~~~~-------------- 106 (760)
.. .++ |+++.+ ...|++|.++.++...
T Consensus 136 yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~ 214 (1080)
T KOG1408|consen 136 YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGN 214 (1080)
T ss_pred EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccc
Confidence 21 000 111111 1234445443221000
Q ss_pred -------------------E----EeCC-----------------CccEEEEEecCCeEEEEECCCeEEEEE--------
Q 004329 107 -------------------T----LQGH-----------------KLQVTGVTLDNEDIVSSSVDSTLKRWR-------- 138 (760)
Q Consensus 107 -------------------~----l~~h-----------------~~~V~~l~~~~~~l~sgs~dg~v~vwd-------- 138 (760)
+ -.|| +....||+.+.+++++|+.+|.|++++
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~ 294 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAG 294 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcc
Confidence 0 0001 112334555666666666666655553
Q ss_pred ----------------------------------------------------------CCc-----eeEEeecCCcCeEE
Q 004329 139 ----------------------------------------------------------KGK-----LVEFWEAHNAPIQT 155 (760)
Q Consensus 139 ----------------------------------------------------------~~~-----~~~~~~~~~~~v~~ 155 (760)
.+. ....+-.|...||.
T Consensus 295 Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~ 374 (1080)
T KOG1408|consen 295 TLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWD 374 (1080)
T ss_pred ccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeee
Confidence 321 11223347777888
Q ss_pred EEEeC------------CCcEEEEECCCcEEEEeCCCceE--E-----e-------------------------------
Q 004329 156 VIRIP------------SGEIVSGSSDTTIKLWKGKKCAQ--T-----F------------------------------- 185 (760)
Q Consensus 156 v~~~~------------~~~l~tgs~dg~i~iwd~~~~~~--~-----~------------------------------- 185 (760)
+...| .+.+++|+.|++||+||+..+.. . +
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s 454 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVS 454 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchh
Confidence 76655 23489999999999998543211 0 0
Q ss_pred -ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC----eEEEEeCCCcEEEEe--
Q 004329 186 -VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG----LIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 186 -~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~----~l~s~s~Dg~I~iwd-- 256 (760)
.+....+++++++|+++ +++|..-|++++|++. -+....+..|...|.|+.++... +|++++.|+.|+|||
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 01234689999999877 9999999999999974 45566677899999999988643 889999999999998
Q ss_pred -CCceEEEEe-cCC-------------------------------------------------cEEEEEEccCCc-EEEE
Q 004329 257 -DGVCVQSIE-HPG-------------------------------------------------CVWDAKFLENGD-IVTA 284 (760)
Q Consensus 257 -~~~~~~~~~-~~~-------------------------------------------------~v~~v~~~~~g~-lvt~ 284 (760)
...+++++. |.. .+..++..|+.+ ++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 222233222 222 455666666666 7899
Q ss_pred EcCCcEEEEeCCCCeeechhhhhhhh-hcc--------cceEEeccccCceeeecCCCCceeec-cCCCcceEEEEe---
Q 004329 285 CSDGVTRIWTVHSDKVADSLELEAYA-SEL--------SQYKLCRKKVGGLKLEDLPGLEALQI-PGTNAGQTKVVR--- 351 (760)
Q Consensus 285 ~~dg~I~vw~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~g~i~~~~l~~~~~l~~-~g~~~g~~~~v~--- 351 (760)
|.|..||||++.++++...+...... ..+ ..+..+...+.++-+.|....|.+.. .||.+-.+-+.+
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 99999999999999999888754332 111 24556777888999999998888754 588765544433
Q ss_pred ------eCCceEEEEEeccc
Q 004329 352 ------EGDNGVAYSWDMKE 365 (760)
Q Consensus 352 ------~~~~~~~~~w~~~~ 365 (760)
-..++-|++|....
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 34468899997654
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=217.39 Aligned_cols=329 Identities=19% Similarity=0.281 Sum_probs=243.7
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..|++.+.+++.++++|.+.|+++.-+|-=. ++.|..+|+|.++++..++ .+..++...+.|++++|..||..
T Consensus 185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-----il~sFk~d~g~VtslSFrtDG~p- 258 (910)
T KOG1539|consen 185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-----ILMSFKQDWGRVTSLSFRTDGNP- 258 (910)
T ss_pred EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc-----EEEEEEccccceeEEEeccCCCe-
Confidence 4699999999999999999999999888766 9999999999999999766 55666655699999999999985
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEecCCe--EEEEECCCeEEEE--ECC----ceeEEeecCCc
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLDNED--IVSSSVDSTLKRW--RKG----KLVEFWEAHNA 151 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~~~~--l~sgs~dg~v~vw--d~~----~~~~~~~~~~~ 151 (760)
.+++|+..|.+.+||++..+.+..+. .|.+.|....|-++. +++.+.|+.+++| |.+ ..++.-.+|..
T Consensus 259 ---~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 259 ---LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred ---eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 59999999999999999888777665 788888888776333 8888889988888 533 34455567888
Q ss_pred CeEEEEEeC-CCc-EEEEECCCcEEEEeCC---------C--------c-------------e-----------------
Q 004329 152 PIQTVIRIP-SGE-IVSGSSDTTIKLWKGK---------K--------C-------------A----------------- 182 (760)
Q Consensus 152 ~v~~v~~~~-~~~-l~tgs~dg~i~iwd~~---------~--------~-------------~----------------- 182 (760)
+..|+.|.. ++. +++++.|++++.+++. + . +
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 888887773 454 5677777766665411 0 0 0
Q ss_pred ---------EEe-----------ecC------CCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEe---ecCCCc
Q 004329 183 ---------QTF-----------VGH------TDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEM---VGHTAI 231 (760)
Q Consensus 183 ---------~~~-----------~~h------~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~---~~h~~~ 231 (760)
.++ -.+ ...+++++.++-|. .+.|+..|.|-+|+++ |-....+ ..|..+
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 000 011 24578888887444 6677778888888864 4444454 778888
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEEEe--CCc-----------------------------------------eEEEE-ec
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKIWK--DGV-----------------------------------------CVQSI-EH 266 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~-----------------------------------------~~~~~-~~ 266 (760)
|++++...-+ .+++++.+|.+++|| ... .++.+ .|
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 8888888877 888888888888887 111 11111 16
Q ss_pred CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcc
Q 004329 267 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG 345 (760)
Q Consensus 267 ~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g 345 (760)
.+.|++++|||||+ +++++.|++||+||+.++.+++.+.++. ++..+.-++.|
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~--------------------------~~~sls~SPng 629 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS--------------------------PCTSLSFSPNG 629 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC--------------------------cceeeEECCCC
Confidence 77899999999999 8999999999999999998887554332 23334456677
Q ss_pred eEEEEeeCCceEEEEEeccc
Q 004329 346 QTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 346 ~~~~v~~~~~~~~~~w~~~~ 365 (760)
+......-+..-+|.|....
T Consensus 630 D~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CEEEEEEecCceEEEEEchh
Confidence 77777777778899998543
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7e-24 Score=203.33 Aligned_cols=248 Identities=23% Similarity=0.384 Sum_probs=212.0
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeC------CCC--------C----------------
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSL------DPS--------D---------------- 51 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~------~~~--------~---------------- 51 (760)
.|.+.+.+++.++.||.+.|+||+|++.+. ++|+|.|++..||.. ... +
T Consensus 174 iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~ 253 (481)
T KOG0300|consen 174 IWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSS 253 (481)
T ss_pred EEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccc
Confidence 688999999999999999999999999998 999999999999972 110 0
Q ss_pred -----CccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCe
Q 004329 52 -----KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NED 124 (760)
Q Consensus 52 -----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 124 (760)
.....+...+.+|.+.|.+..|...++ .+++++.|.+..+||+++++++..+.||....+.++-+ ...
T Consensus 254 ~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-----Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrL 328 (481)
T KOG0300|consen 254 EKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-----QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRL 328 (481)
T ss_pred cccCCceeeeeeeeeeccccceEehhhhcCcc-----eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceE
Confidence 011224567889999999999999888 48999999999999999999999999999999888877 444
Q ss_pred EEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEe
Q 004329 125 IVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 125 l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~ 198 (760)
+++.+.|.+.++||.+ ..+..|++|...|+++.|..+.++++|+.|.+|++||++. ++.++. ...+++.++++
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs 407 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVS 407 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEee
Confidence 8999999999999987 4566789999999999999999999999999999999654 444443 45778999999
Q ss_pred CCCe-EEEEeCCCeEEEEecCCceEEEee-----cCCCcEEEEEEeCCC---eEEEEeCCCcEEEEe
Q 004329 199 PGVG-IISASHDCTIRLWALTGQVLMEMV-----GHTAIVYSIDSHASG---LIVSGSEDRFAKIWK 256 (760)
Q Consensus 199 ~~~~-l~s~s~dg~I~iwd~~~~~~~~~~-----~h~~~v~~v~~~p~~---~l~s~s~Dg~I~iwd 256 (760)
.++. ++.--.+..|++||++|..+..+. +|...|.|++|..+. -|+++|.|+.+.-|+
T Consensus 408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 8886 556667788999999998776654 799999999999775 799999999999997
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=185.59 Aligned_cols=245 Identities=22% Similarity=0.347 Sum_probs=202.4
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+.++-+.|.+.|.|.+|+|+|. ++|||.|++|++.-.+.......-....+.-|.+.|..++|..+... ...++++++
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s-~~~il~s~g 159 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES-GGAILASAG 159 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc-CceEEEecC
Confidence 3445567999999999999999 99999999999987764433223344567779999999999876543 223555554
Q ss_pred -CCCeEEEEECCCCceEEEEeCCCccEEEE-EecCCeEEEEECCCeEEEEECC--ceeEEeec-------CCcCeEEEEE
Q 004329 90 -MDTMVLVWDLGSGEKVQTLQGHKLQVTGV-TLDNEDIVSSSVDSTLKRWRKG--KLVEFWEA-------HNAPIQTVIR 158 (760)
Q Consensus 90 -~dg~I~vwd~~~~~~~~~l~~h~~~V~~l-~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~-------~~~~v~~v~~ 158 (760)
.|..|++-|..+|+....+.+|.+.|.++ .|++-.+++|+.|.+|++||++ .++.++.. ....|.++++
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 57889999999999999999999999987 6778889999999999999976 44444431 2467999999
Q ss_pred eCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEE-----EeecCC
Q 004329 159 IPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLM-----EMVGHT 229 (760)
Q Consensus 159 ~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~-----~~~~h~ 229 (760)
.|.|+ +++|-.|....+||++ ..++.+..|+..|+++.|+|+.. +++|+.|..|++-|+.|.... ....|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence 99999 6789999999999955 57889999999999999999877 999999999999999876433 345799
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
..+..+.|+|.. .+++.+.|.++.+|-
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEec
Confidence 999999999999 899999999999995
No 87
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=211.41 Aligned_cols=283 Identities=19% Similarity=0.261 Sum_probs=215.3
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEE
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRW 137 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vw 137 (760)
...+.+|...|.|++=+|.... .+++|+.||.|++||+.+.++..+++.|.+.|..|+++.+.+++++.|.+|+.|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls----~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLS----TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQW 134 (433)
T ss_pred hhhccccccccchhhcCcchhh----hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeee
Confidence 4467899999999999988743 499999999999999999999999999999999999999899999999999999
Q ss_pred ECCc-eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeC--CCceEEeecCCCceEEEEEeCCCe--EEEEeCCCe
Q 004329 138 RKGK-LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVG--IISASHDCT 211 (760)
Q Consensus 138 d~~~-~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~ 211 (760)
.... +..++- ....+..+..+..+. ++||+. .|.+||. ..+++.+....+.|.++.|+|... |++|+.|+.
T Consensus 135 k~~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 135 KIDGPPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eccCCcceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 7653 333332 233455555444333 666664 5899994 468888888889999999999544 888889999
Q ss_pred EEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeCC---ceEEEEe-cCCcEEEEEEccCCc-EEEE
Q 004329 212 IRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDG---VCVQSIE-HPGCVWDAKFLENGD-IVTA 284 (760)
Q Consensus 212 I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~---~~~~~~~-~~~~v~~v~~~~~g~-lvt~ 284 (760)
|.+||++ +.++... .-...-+.|+|+|.+ .++++++|..++.+|.. .++.... |.+.|.++.|+|.|+ +++|
T Consensus 212 IvLyD~R~~~Pl~KV-i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKV-ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCcccee-eeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 9999975 4444433 335566789999977 89999999999999943 3344333 788999999999999 9999
Q ss_pred EcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEEecc
Q 004329 285 CSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMK 364 (760)
Q Consensus 285 ~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~ 364 (760)
+-|.+||||..+.+.-...+..+.... ++.+.++.|.+ +++.+.|++.+..|-
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~------------------------V~~Vk~S~Dsk-yi~SGSdd~nvRlWk-- 343 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQH------------------------VFCVKYSMDSK-YIISGSDDGNVRLWK-- 343 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhhe------------------------eeEEEEecccc-EEEecCCCcceeeee--
Confidence 999999999999887655544332211 12233344443 444455667888888
Q ss_pred ccceeecccee
Q 004329 365 EQKWDKLGEVV 375 (760)
Q Consensus 365 ~~~W~~~g~~~ 375 (760)
...|++.|-..
T Consensus 344 a~Aseklgv~t 354 (433)
T KOG0268|consen 344 AKASEKLGVIT 354 (433)
T ss_pred cchhhhcCCCC
Confidence 45677877553
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=220.46 Aligned_cols=296 Identities=20% Similarity=0.305 Sum_probs=235.6
Q ss_pred CccccCCCceE---eEEeccCCCCEEEEEEcC------------CCeEEEEECCCeEEEEeCCCCCCcccee--------
Q 004329 1 MMDIDFKEYQL---SSELRGHEDDVRGICVCD------------NVGIATSSRDRTVRFWSLDPSDKRKYHS-------- 57 (760)
Q Consensus 1 I~~~d~~~~~l---~~~l~gH~~~V~~v~~~~------------~~~l~tgs~Dg~i~iWd~~~~~~~~~~~-------- 57 (760)
||+||+..-+. ...+--|+..|++|.--| .+.++|||.|++||+|+++.+.......
T Consensus 348 lYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l 427 (1080)
T KOG1408|consen 348 LYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL 427 (1080)
T ss_pred EEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh
Confidence 57898865432 234446999998886543 3459999999999999997532111000
Q ss_pred ------------------------eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCc
Q 004329 58 ------------------------SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKL 113 (760)
Q Consensus 58 ------------------------~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~ 113 (760)
....-+....+.+++.+|++. +|++|..-|+++||++.+.+....+..|..
T Consensus 428 ~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-----hLAsGDr~GnlrVy~Lq~l~~~~~~eAHes 502 (1080)
T KOG1408|consen 428 SKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-----HLASGDRGGNLRVYDLQELEYTCFMEAHES 502 (1080)
T ss_pred hcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-----eecccCccCceEEEEehhhhhhhheecccc
Confidence 001112345799999999998 699999999999999999998889999999
Q ss_pred cEEEEEec-----CCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCC---cEEEEECCCcEEEEeCCC--
Q 004329 114 QVTGVTLD-----NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSG---EIVSGSSDTTIKLWKGKK-- 180 (760)
Q Consensus 114 ~V~~l~~~-----~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~---~l~tgs~dg~i~iwd~~~-- 180 (760)
.|.|+.++ ...|++++.|..|++||.+ .++.++.+|...|+++.|.-+| ++++++.|+.|.+--.++
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 99999997 3449999999999999986 5677889999999999998876 289999999886543221
Q ss_pred ceEEeecC-----CCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeec---CCCcEEEEEEeCCC-eEEEEeCC
Q 004329 181 CAQTFVGH-----TDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVG---HTAIVYSIDSHASG-LIVSGSED 249 (760)
Q Consensus 181 ~~~~~~~h-----~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~---h~~~v~~v~~~p~~-~l~s~s~D 249 (760)
..+.+..| ...+..+++.|..+ +++++.|+.|+|||+ .|+..+.+++ |.+....+...|.| ++++...|
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 12233322 35678899999665 999999999999997 5777777764 67788899999999 99999999
Q ss_pred CcEEEEe--CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 250 RFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 250 g~I~iwd--~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.++.++| .++|+... .|...|+.+.|.+|-+ +++.+.||.|-||.+.....+
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii 718 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMII 718 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhH
Confidence 9999999 88888766 4888999999999998 999999999999999875433
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=198.56 Aligned_cols=283 Identities=18% Similarity=0.299 Sum_probs=209.2
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
..|+||.+.|++++|+.||+ |+|++.|++||+|+++.-......+...... -+.-+.+.|.|+... ++++.-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s----~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKS----VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcce----EEEEEccC
Confidence 46889999999999999999 9999999999999997533222222221111 224578899999885 47777788
Q ss_pred CeEEEEECCCC---ceEE---------EEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC-CceeEEeecCCcCeEEE
Q 004329 92 TMVLVWDLGSG---EKVQ---------TLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK-GKLVEFWEAHNAPIQTV 156 (760)
Q Consensus 92 g~I~vwd~~~~---~~~~---------~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~-~~~~~~~~~~~~~v~~v 156 (760)
..+++|.+... .... .-+.|+..+..+-.- ..++++++.|..|.+|+. ++.+..+......-...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDA 234 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccce
Confidence 89999987432 1111 112355556555553 556999999999999998 46777777777777788
Q ss_pred EEeCCCc-EEEEECCCcEEEEeC---C-----C--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-----
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKG---K-----K--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG----- 219 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~---~-----~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~----- 219 (760)
+.+|+|+ +++++---.+++|.. + + ....+++|...|..++|+++.. +++.|.||++++||.+-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 9999999 456777788999971 1 1 2236789999999999999766 99999999999999631
Q ss_pred ---ceEEEe----ecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCCcEEEEEcCC
Q 004329 220 ---QVLMEM----VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDG 288 (760)
Q Consensus 220 ---~~~~~~----~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g~lvt~~~dg 288 (760)
..+.+. ....+....+..+|+|.+++.+....++++. .++....++ |...|.+++|+++|++++.+.|.
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 122222 1223344589999999555566677799998 556555565 88899999999999998899999
Q ss_pred cEEEEeCCCCee
Q 004329 289 VTRIWTVHSDKV 300 (760)
Q Consensus 289 ~I~vw~~~~~~~ 300 (760)
.+|++.-.+|..
T Consensus 395 ~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 395 YVRVIRNTPGWH 406 (420)
T ss_pred eeeeecCCCchh
Confidence 999998666543
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=6.7e-23 Score=227.11 Aligned_cols=284 Identities=23% Similarity=0.325 Sum_probs=226.7
Q ss_pred eccC-CCCEEEEEEcCCCe-EEEEE--CCCeEEEEeCCCCCC-------ccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 15 LRGH-EDDVRGICVCDNVG-IATSS--RDRTVRFWSLDPSDK-------RKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 15 l~gH-~~~V~~v~~~~~~~-l~tgs--~Dg~i~iWd~~~~~~-------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+-+| +..|.+|..+|++. ++||+ .||.++||+.+.-.. ...........|.+.|+|+.|++++.
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~----- 82 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS----- 82 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-----
Confidence 3445 56799999999999 99999 999999999752110 01234556778999999999999998
Q ss_pred EEEEEeCCCeEEEEECCC------------------CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--c
Q 004329 84 GLVSGGMDTMVLVWDLGS------------------GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--K 141 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~------------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~ 141 (760)
+|++|+.|+.|.||+... .+.+..+.+|...|..++|+ +.++++++.|++|.+|+.. +
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence 799999999999998862 13577789999999999998 6679999999999999864 7
Q ss_pred eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeecC------CCceEEEEEeCCCe-EEEEe----
Q 004329 142 LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGH------TDTVRGLSVMPGVG-IISAS---- 207 (760)
Q Consensus 142 ~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h------~~~V~~l~~~~~~~-l~s~s---- 207 (760)
.+..+++|.+.|..+.|.|-|+ +++-+.|++|++|++.. ..+.+.++ ....+.+.|+||+. +++..
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 8888999999999999999998 77899999999999554 44555443 34578999999888 44432
Q ss_pred CCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCC------C------------eEEEEeCCCcEEEEeCC--ceEEEEe-
Q 004329 208 HDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHAS------G------------LIVSGSEDRFAKIWKDG--VCVQSIE- 265 (760)
Q Consensus 208 ~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~------~------------~l~s~s~Dg~I~iwd~~--~~~~~~~- 265 (760)
.-.++.|.+-.+ +.-..+.||..++.++.|+|. . .+|+|+.|++|-||.+. +++..+.
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 234577777543 345678899999999999872 1 47889999999999943 3443333
Q ss_pred -cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 266 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 266 -~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
...+|.+++|+|||. +++++.||+|.++.++..++-..
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 455999999999999 89999999999999987655433
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=193.72 Aligned_cols=259 Identities=19% Similarity=0.331 Sum_probs=203.5
Q ss_pred EEEEECCCeEEEEeCCCCC-------CccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceE
Q 004329 33 IATSSRDRTVRFWSLDPSD-------KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV 105 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~-------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 105 (760)
|+.|+....|.=+++.... .+.+.+...+..|.+.+++++.+.. ++++|+.|-+|+|||+.+...+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~-------~~aSGssDetI~IYDm~k~~ql 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP-------YVASGSSDETIHIYDMRKRKQL 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce-------eEeccCCCCcEEEEeccchhhh
Confidence 7888888888777765322 1223345567889999999998543 6999999999999999999999
Q ss_pred EEEeCCCccEEEEEec-CC---eEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEE-EEECCCcEEEEeC
Q 004329 106 QTLQGHKLQVTGVTLD-NE---DIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIV-SGSSDTTIKLWKG 178 (760)
Q Consensus 106 ~~l~~h~~~V~~l~~~-~~---~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~-tgs~dg~i~iwd~ 178 (760)
..+..|.+.|+++.|. +. .|++|+.||.|.+|+.+ .++..+++|.+.|+.++.+|.++++ +.+.|+.++.||+
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence 9999999999999997 22 59999999999999987 7888999999999999999999964 8999999999994
Q ss_pred CCceEEee-cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 179 KKCAQTFV-GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 179 ~~~~~~~~-~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
-+....+. .-...-+.+.|+|.+. |+.++.+ .|-+|.+....+.........+.|+.|...+.+++|++|+.|++||
T Consensus 157 V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred hcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEec
Confidence 43322221 1222334489999665 6665554 5888987655544444445678888888777999999999999999
Q ss_pred --CCceEEEEe-cCCcEEEEEEc--cCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 257 --DGVCVQSIE-HPGCVWDAKFL--ENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 257 --~~~~~~~~~-~~~~v~~v~~~--~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
...+...+. |+..|-++.+- |++. ++++++||.|+|||++...
T Consensus 236 ~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 456666554 99999999964 4455 8999999999999998763
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5e-23 Score=207.87 Aligned_cols=236 Identities=27% Similarity=0.404 Sum_probs=199.3
Q ss_pred cCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCc-----cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 17 GHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKR-----KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
-|.+.|+.+.+-|... ++|.+..+.|.|||....... ...+...+.+|...=.+++|++... +.+++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~----g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE----GTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc----eeEeecc
Confidence 4999999999998877 888899999999998643321 2334557899988788899998775 5799999
Q ss_pred CCCeEEEEECCCC-------ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC----ceeEEeecCCcCeEE
Q 004329 90 MDTMVLVWDLGSG-------EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG----KLVEFWEAHNAPIQT 155 (760)
Q Consensus 90 ~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~----~~~~~~~~~~~~v~~ 155 (760)
.|+.|++||+... .+...+.+|...|..++|+ ...|.+++.|+.+.+||++ ++......|..+|+|
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999999654 2356688999999999997 5669999999999999987 455667789999999
Q ss_pred EEEeCCCc--EEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCC---------
Q 004329 156 VIRIPSGE--IVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTG--------- 219 (760)
Q Consensus 156 v~~~~~~~--l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~--------- 219 (760)
+.|+|-+. |++||.|++|++||++ .+.+++.+|.+.|.++.|+|+.. +++++.|+.+.+||+..
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 99999655 7899999999999965 56778999999999999999554 99999999999999731
Q ss_pred ------ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 220 ------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 220 ------~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
+.+..-.||...|..+.|+|+. .+++.++|+.+.||+
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 2345556899999999999998 899999999999998
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-23 Score=194.73 Aligned_cols=233 Identities=20% Similarity=0.312 Sum_probs=190.1
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC---ceEEEEeCCCccEEEEEec----CCeEEEEECCC
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG---EKVQTLQGHKLQVTGVTLD----NEDIVSSSVDS 132 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~---~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg 132 (760)
....|+..|..+...--+. .|+|++.|++|+|+..+.. +++.++.+|.++|..++|- ++.|++++.||
T Consensus 6 idt~H~D~IHda~lDyygk-----rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGK-----RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhhhhHhhhhhhcc-----eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 3356777787776655555 6999999999999999765 4678899999999999994 56699999999
Q ss_pred eEEEEECC----ceeEEeecCCcCeEEEEEeCCCc---EEEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEeCC
Q 004329 133 TLKRWRKG----KLVEFWEAHNAPIQTVIRIPSGE---IVSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 133 ~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~~~---l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~~~ 200 (760)
.|.+|+.+ ........|...|++++|.|.+. |++++.||.|.+.+.+. ..+....|.-.|++++|.|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99999765 44456678999999999999865 78999999999997433 23456789999999999983
Q ss_pred ---------------CeEEEEeCCCeEEEEecCC---ceEEEeecCCCcEEEEEEeCCC-----eEEEEeCCCcEEEEeC
Q 004329 201 ---------------VGIISASHDCTIRLWALTG---QVLMEMVGHTAIVYSIDSHASG-----LIVSGSEDRFAKIWKD 257 (760)
Q Consensus 201 ---------------~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~~~v~~v~~~p~~-----~l~s~s~Dg~I~iwd~ 257 (760)
.+|++|+.|..|+||+.+. ..-.++.+|...|+.++|.|.- .+++++.||++.||..
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 2499999999999999865 4455588999999999999963 8999999999999982
Q ss_pred Cce----EEEE--ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 258 GVC----VQSI--EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 258 ~~~----~~~~--~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
+.. ..++ ..+..++.+.|+..|. |++++.|..|.+|.-+.
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 211 1122 2567899999999999 78888899999998653
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=202.32 Aligned_cols=241 Identities=26% Similarity=0.366 Sum_probs=209.1
Q ss_pred eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE--------eCCCccEEEEEec--CCeEEEEECC
Q 004329 62 LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL--------QGHKLQVTGVTLD--NEDIVSSSVD 131 (760)
Q Consensus 62 ~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l--------~~h~~~V~~l~~~--~~~l~sgs~d 131 (760)
.+..+.+.|..|+|++. ++++|+.||.|.+||..+|+..+.+ .-+..+|.|++|+ ...+++|+.|
T Consensus 210 Fg~KSh~EcA~FSPDgq-----yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQ-----YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred cccccchhheeeCCCCc-----eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 35567889999999998 7999999999999999999765543 3467899999998 3449999999
Q ss_pred CeEEEEEC--CceeEEee-cCCcCeEEEEEeCCCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EE
Q 004329 132 STLKRWRK--GKLVEFWE-AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-II 204 (760)
Q Consensus 132 g~v~vwd~--~~~~~~~~-~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~ 204 (760)
|.|++|.+ +.+++.+. .|...|+|+.|+.|+. +++++.|.++|+.- .+++.+.+.+|+..|+...|.+++. ++
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99999964 68888886 8999999999999876 99999999999986 5678899999999999999999776 99
Q ss_pred EEeCCCeEEEEec-CCceEEEee--cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEe----cCCcEEEEE
Q 004329 205 SASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAK 274 (760)
Q Consensus 205 s~s~dg~I~iwd~-~~~~~~~~~--~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~----~~~~v~~v~ 274 (760)
+++.||+|++|+. +++++.++. +...+|.++-..|.+ .++.|...++|.|-+ .|..++++. ..+...+.+
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE
Confidence 9999999999996 577887776 345688999998887 899999999999999 889999886 334677888
Q ss_pred EccCCc-EEEEEcCCcEEEEeCCCCeeechhhhh
Q 004329 275 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELE 307 (760)
Q Consensus 275 ~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~ 307 (760)
.+|.|. +.+.+.|+.++.|...+|++...+...
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 899999 888999999999999999987766543
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.5e-22 Score=191.02 Aligned_cols=236 Identities=21% Similarity=0.350 Sum_probs=187.7
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
+.....++.|.+.|++++.+ +. +++||.|-+|+|||+.+.. ....+..|.+.|+++.|.++... ..|++
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S~---shLlS 102 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLSK---SHLLS 102 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcch---hheee
Confidence 34466778999999999986 34 9999999999999998554 56677889999999999998752 25999
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
|+.||.|.+|+....+++..+++|.+.|+.++.+ +..-++.+.|+.++.||+- +.-....- ...-+.+.|+|.|.
T Consensus 103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGD 181 (362)
T ss_pred ecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCC
Confidence 9999999999999999999999999999999997 6668899999999999873 22222221 12223489999998
Q ss_pred EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeC-
Q 004329 164 IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA- 239 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p- 239 (760)
-++.+....|-+|.+.. ....+. ....+.++.|..++.+++|..|+.|++||.+ ..+...+.+|...|-++.+..
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred EEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 44444445688887543 222222 2355777888878889999999999999976 778888999999999998543
Q ss_pred -CC-eEEEEeCCCcEEEEe
Q 004329 240 -SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 240 -~~-~l~s~s~Dg~I~iwd 256 (760)
++ +|+++|.||.|++||
T Consensus 261 ~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred CCceEEEEeccCceEEEEE
Confidence 45 999999999999999
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=219.79 Aligned_cols=277 Identities=18% Similarity=0.318 Sum_probs=199.5
Q ss_pred eEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC----------ccEEEEEecC-----
Q 004329 59 KILL-GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK----------LQVTGVTLDN----- 122 (760)
Q Consensus 59 ~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~----------~~V~~l~~~~----- 122 (760)
+.+. .|.+.|+++.|+++|+ |||+||.||.|+||.+...+....-.+.. +.+..+..+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK-----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK-----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eccccccCCcEEEEEeCCCCc-----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 3344 8999999999999999 79999999999999986533211100000 0000000000
Q ss_pred Ce--EEEEECCCeEEEEE-----CCceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceE
Q 004329 123 ED--IVSSSVDSTLKRWR-----KGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVR 193 (760)
Q Consensus 123 ~~--l~sgs~dg~v~vwd-----~~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~ 193 (760)
.. .-.+.....+.+-+ ..++++.+.+|.+.|..+.|+.++.|++++.|++||+|++. +|++.| .|.+.|+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVT 413 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVT 413 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeE
Confidence 11 11222222222221 13788899999999999999999999999999999999954 566666 5999999
Q ss_pred EEEEeC--CCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CC-ceEEEEe---
Q 004329 194 GLSVMP--GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG-VCVQSIE--- 265 (760)
Q Consensus 194 ~l~~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~-~~~~~~~--- 265 (760)
|++|+| +++|++|+-||.||||++....+..+..-..-|+++++.|+| ..+.|+.+|.+++|+ .+ +..+...
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999 566999999999999999988888888778999999999999 999999999999999 22 2222221
Q ss_pred c------CCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCcee
Q 004329 266 H------PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL 337 (760)
Q Consensus 266 ~------~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l 337 (760)
+ ...|+++.|.|... +++.+.|..|||||.....++..+.. +...- ...
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG--~~n~~---------------------SQ~ 550 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG--FRNTS---------------------SQI 550 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc--cccCC---------------------cce
Confidence 1 22799999998654 99999999999999988777665441 11110 111
Q ss_pred eccCCCcceEEEEeeCCceEEEEEeccc
Q 004329 338 QIPGTNAGQTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 338 ~~~g~~~g~~~~v~~~~~~~~~~w~~~~ 365 (760)
......||..++..+ ++..+|+|+...
T Consensus 551 ~Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 551 SASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred eeeEccCCCEEEEee-cCceEEEEeCCC
Confidence 222344776666665 668899999644
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=206.91 Aligned_cols=242 Identities=19% Similarity=0.308 Sum_probs=200.4
Q ss_pred cCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 5 DFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+..+....+++.-..+.|.+++|..||+ ++.|...|.|+|||..+. .....+.+|..+|..+.|+|.+..
T Consensus 54 ~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~~~~f~~~d~t---- 124 (487)
T KOG0310|consen 54 SSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVHVTKFSPQDNT---- 124 (487)
T ss_pred ecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----HHHHHHhhccCceeEEEecccCCe----
Confidence 3344445555666788999999999999 888889999999996532 256778899999999999999875
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCce--eEEeecCCcCeEEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKL--VEFWEAHNAPIQTVIR 158 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~v~~v~~ 158 (760)
.+++|+.|+.+++||+.+......+.+|+..|.|.+++ +..+++||.||.|++||++.. ...--.|..+|..+.+
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~ 204 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA 204 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE
Confidence 59999999999999999988767899999999999997 335999999999999998733 2333478999999999
Q ss_pred eCCCcEEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEE
Q 004329 159 IPSGEIVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYS 234 (760)
Q Consensus 159 ~~~~~l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~ 234 (760)
.|.|.+++......+++||+-. ....+..|...|+|+++..++. +++++-|+.+++||.+.-.+..-....++|.+
T Consensus 205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLS 284 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceee
Confidence 9998877666778999999542 2234445999999999998655 99999999999999766555555567899999
Q ss_pred EEEeCCC-eEEEEeCCCcEEEE
Q 004329 235 IDSHASG-LIVSGSEDRFAKIW 255 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iw 255 (760)
++.+|++ .++.|..||.+.+-
T Consensus 285 iavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEecCCCceEEEecccceeeee
Confidence 9999998 99999999977664
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-22 Score=213.12 Aligned_cols=244 Identities=25% Similarity=0.402 Sum_probs=205.9
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeC-CCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLG-HTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~ 78 (760)
||.|+..+.+.......+...|+++.|+++|. |++|..+|.|.|||..+.. ....+.+ |...|.+++|...
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-----~~~~~~~~h~~rvg~laW~~~-- 271 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-----KTRTLRGSHASRVGSLAWNSS-- 271 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-----ccccccCCcCceeEEEeccCc--
Confidence 57788888887777777799999999999999 9999999999999987554 4455666 9999999999832
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEE-EeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQT-LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
.+.+|+.|+.|..+|++..+.... +.+|...||.+.|+ +.++++|+.|+.+.|||.. .+...+..|...|
T Consensus 272 -----~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 272 -----VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred -----eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 489999999999999988765544 88999999999997 6679999999999999874 6778889999999
Q ss_pred EEEEEeCC--CcEEEE--ECCCcEEEEeCCCceEEe-ecCCCceEEEEEeCCCe-EEEE--eCCCeEEEEec-CCceEEE
Q 004329 154 QTVIRIPS--GEIVSG--SSDTTIKLWKGKKCAQTF-VGHTDTVRGLSVMPGVG-IISA--SHDCTIRLWAL-TGQVLME 224 (760)
Q Consensus 154 ~~v~~~~~--~~l~tg--s~dg~i~iwd~~~~~~~~-~~h~~~V~~l~~~~~~~-l~s~--s~dg~I~iwd~-~~~~~~~ 224 (760)
.+++|+|- +.|++| +.|+.|++||.......- ......|.+|.|++... ++++ ..+..|.||+. +...+..
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 99999995 346764 579999999966433322 23457899999999664 5543 45778999996 5677888
Q ss_pred eecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 225 MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.+|...|..++++|+| .+++|+.|.++++|+
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 99999999999999999 999999999999998
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.4e-22 Score=204.70 Aligned_cols=234 Identities=21% Similarity=0.337 Sum_probs=196.4
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----------ceEEEEeCCCccEEEEEec---CCeEE
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----------EKVQTLQGHKLQVTGVTLD---NEDIV 126 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~l~~~---~~~l~ 126 (760)
....|.+.|+.+.+.|.... ++++++..+.|+|||..+. .+-.++.+|...-.+++|+ .++++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~----iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPN----IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred EeccCCccchhhhhCCCCCc----EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 34568999999999999875 5888899999999998543 2233788999988889997 66799
Q ss_pred EEECCCeEEEEECC---------ceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC----ceEEeecCCCc
Q 004329 127 SSSVDSTLKRWRKG---------KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK----CAQTFVGHTDT 191 (760)
Q Consensus 127 sgs~dg~v~vwd~~---------~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~----~~~~~~~h~~~ 191 (760)
+++.|++|++||+. .+...+.+|...|..++|++-.. |.+++.|+.+.+||++. +.+...+|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 99999999999864 34567889999999999999654 78999999999999773 55577889999
Q ss_pred eEEEEEeC-CCe-EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe---CCce--
Q 004329 192 VRGLSVMP-GVG-IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVC-- 260 (760)
Q Consensus 192 V~~l~~~~-~~~-l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd---~~~~-- 260 (760)
|.|++|+| ++. |++||.|++|++||++ ..++..+.+|...|.++.|+|.. .|++++.|+.+.+|| .+..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999 444 9999999999999986 46888999999999999999987 999999999999999 1111
Q ss_pred ---------EEEE---ecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCC
Q 004329 261 ---------VQSI---EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 261 ---------~~~~---~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~ 297 (760)
-..| +|...|..+.|+|+.. +++.+.|+.+.||.+..
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1113 3777999999999988 78888999999999864
No 100
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=3e-21 Score=212.09 Aligned_cols=257 Identities=15% Similarity=0.154 Sum_probs=192.1
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCc--------cceeeeEeeCCCCCeEEEEEeC-CCCCCCCcEEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKR--------KYHSSKILLGHTSFVGPLAWIS-PNEEFPEGGLVS 87 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~--------~~~~~~~~~~h~~~V~~l~~~~-~~~~~~~~~l~s 87 (760)
|-..|+....++++. +++++.+.....|+...+... .......+.+|.+.|.+++|+| ++. +|++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-----~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-----KLFT 93 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-----EEEE
Confidence 445666667777755 888888888888876532100 0011234789999999999999 444 6999
Q ss_pred EeCCCeEEEEECCCC-------ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 88 GGMDTMVLVWDLGSG-------EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 88 gs~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
|+.|++|++||+.++ +++..+.+|...|.+++|+ ++.+++++.|++|++||.. .....+..|...|.+
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s 173 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence 999999999999765 3567889999999999997 2469999999999999975 566778889999999
Q ss_pred EEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeecCCCc-eEEEEEeCCC-eEEEEe----CCCeEEEEecCC--ceEEE
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDT-VRGLSVMPGV-GIISAS----HDCTIRLWALTG--QVLME 224 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~-V~~l~~~~~~-~l~s~s----~dg~I~iwd~~~--~~~~~ 224 (760)
++|+|++. +++++.|++|++||.+. ....+.+|.+. +..+.|.+++ .+++++ .|+.|++||++. .++..
T Consensus 174 la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 174 LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999988 78999999999999664 45567778765 3456777754 466544 479999999853 33433
Q ss_pred eecC-CCcEEEEEEeCCC-eEEEEe-CCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCC
Q 004329 225 MVGH-TAIVYSIDSHASG-LIVSGS-EDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG 279 (760)
Q Consensus 225 ~~~h-~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g 279 (760)
...+ ...+....|++++ .+++++ .|+.|++|| .+....... +..++..++|.|.-
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3333 3456667788888 777776 599999999 555555443 44578888888853
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=5.1e-22 Score=198.54 Aligned_cols=266 Identities=20% Similarity=0.313 Sum_probs=220.0
Q ss_pred CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 20 DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
..+.++...+... ++||+.|.++.++|..+++ ....+.||...|+.+.|+++.. .+++++.|..|++|.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~kki~~v~~~~~~~-----~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTKKITSVKFHKDLD-----TVITASADEIIRVWS 289 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh-----hhhhccCcceEEEEEEeccchh-----heeecCCcceEEeec
Confidence 4678888887733 9999999999999988665 6788999999999999999987 589999999999999
Q ss_pred CCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeec--CCcCeEEEEEeCCCc-EEEEECCC
Q 004329 99 LGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEA--HNAPIQTVIRIPSGE-IVSGSSDT 171 (760)
Q Consensus 99 ~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~--~~~~v~~v~~~~~~~-l~tgs~dg 171 (760)
............|..+|+.+..+ +++|++++.||+..+.|.. .++..... ..-.+++.+|+|||. +.+|..|+
T Consensus 290 ~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 290 VPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred cccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 98888888888999999999886 8889999999999999875 33333322 234689999999999 56999999
Q ss_pred cEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEEEeec-CCCcEEEEEEeCCC-eEEE
Q 004329 172 TIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLMEMVG-HTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 172 ~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~~-h~~~v~~v~~~p~~-~l~s 245 (760)
.+++||+.. ....|.+|+++|..+.|+.+|+ ++++++|+.|++||++.- ...++.- ....+.++.|.+.| +++.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 999999654 5568899999999999999888 999999999999998643 2333332 23379999999999 9999
Q ss_pred EeCCCcEEEEe----CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 246 GSEDRFAKIWK----DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 246 ~s~Dg~I~iwd----~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
+|.|=+|++++ ..+++..+. |.+..+++.|....+ +++++.|..++++.+
T Consensus 450 ~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99998888888 344554444 777899999988877 778888988888764
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.5e-23 Score=190.17 Aligned_cols=236 Identities=25% Similarity=0.358 Sum_probs=192.6
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
..|.+.|.++...--|+ |+|||.|++|+|+....+.. ......+.+|.++|..++|..+.- .++|++++.||.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~---G~iLAScsYDgkV 82 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKF---GTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeeccccc---CcEeeEeecCceE
Confidence 47999998887776666 99999999999999985542 456788999999999999976432 2379999999999
Q ss_pred EEEECCCCce--EEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECC-----ceeEEeecCCcCeEEEEEeCC--
Q 004329 95 LVWDLGSGEK--VQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNAPIQTVIRIPS-- 161 (760)
Q Consensus 95 ~vwd~~~~~~--~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~v~~v~~~~~-- 161 (760)
.||.-++++- ......|...|++++|. +-.|++++.||.|.+.+.. ........|.-.|++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999888743 34566899999999996 3339999999999999653 334456689999999999985
Q ss_pred -C------------cEEEEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCC-----CeEEEEeCCCeEEEEecCC
Q 004329 162 -G------------EIVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPG-----VGIISASHDCTIRLWALTG 219 (760)
Q Consensus 162 -~------------~l~tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~-----~~l~s~s~dg~I~iwd~~~ 219 (760)
| +|++|+.|..|++|+... ..+.+.+|.+.|+.++|.|. ..+++|+.||++.||..+.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 3 389999999999998543 44568999999999999993 2399999999999998642
Q ss_pred c----eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 220 Q----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 220 ~----~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+ ....+......++.+.|+..| .|+.++.|+.|.+|.
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 2 222234467889999999999 999999999999998
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.3e-23 Score=215.68 Aligned_cols=295 Identities=23% Similarity=0.380 Sum_probs=231.5
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE-eCCCCCCCCcEEEEE
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW-ISPNEEFPEGGLVSG 88 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~~~~~l~sg 88 (760)
.+.+++.|++.|+.+....+++ |+++|.|-+|++|+...+. ..+..++..|...|.|+++ .++.. ++++|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~-----lvaSg 136 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNE-----LVASG 136 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---chhHhhhhcccchheeeeecccCce-----eEEec
Confidence 5778899999999999999987 9999999999999987543 3467788999999999999 44444 69999
Q ss_pred eCCCeEEEEECCCC--ceEE--------EEe-CCCccEEEEEecCC--eEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 89 GMDTMVLVWDLGSG--EKVQ--------TLQ-GHKLQVTGVTLDNE--DIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 89 s~dg~I~vwd~~~~--~~~~--------~l~-~h~~~V~~l~~~~~--~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
|.|+.|.+||++++ +.+. .+. ++...|.+++.++. .+++|+..+.+++||.. +.+..+++|...|
T Consensus 137 GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNV 216 (735)
T KOG0308|consen 137 GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNV 216 (735)
T ss_pred CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccce
Confidence 99999999999977 2222 233 78899999999844 59999999999999875 6667788999999
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeecC
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVGH 228 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h 228 (760)
.++..+++|. ++++|.||+|++||++ .|+.++..|+..|+++..+|+-. +++|+.||.|..-|+.. .....+...
T Consensus 217 r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~ 296 (735)
T KOG0308|consen 217 RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE 296 (735)
T ss_pred EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC
Confidence 9999999997 9999999999999965 58889999999999999998655 99999999999999866 333344455
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEeC---------CceEEE------------------EecCCcEEEEEEccCCc
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWKD---------GVCVQS------------------IEHPGCVWDAKFLENGD 280 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~---------~~~~~~------------------~~~~~~v~~v~~~~~g~ 280 (760)
..+|..+..+... -+-+++.|+.|+-|.. +.+... +.....+...+...|.+
T Consensus 297 daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkR 376 (735)
T KOG0308|consen 297 DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKR 376 (735)
T ss_pred CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcc
Confidence 6677777776444 5578889999999951 111100 01111344444555555
Q ss_pred -EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc
Q 004329 281 -IVTACSDGVTRIWTVHSDKVADSLELEAYASEL 313 (760)
Q Consensus 281 -lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~ 313 (760)
++|=...|.+.+||+-.++.+..+.-..|+..+
T Consensus 377 hVlTkDa~gnv~lwDIl~~~~~~d~gk~~FE~iv 410 (735)
T KOG0308|consen 377 HVLTKDAKGNVALWDILACVKVEDFGKVDFEEIV 410 (735)
T ss_pred eEeeecCCCCEEEEEeeeeeehhhcccccHHHHH
Confidence 888888999999999888887766644454444
No 104
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=3.1e-21 Score=212.00 Aligned_cols=224 Identities=20% Similarity=0.236 Sum_probs=172.0
Q ss_pred EeccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCC--ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 14 ELRGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDK--RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
.+.||++.|++++|+| ++. |++||.||+|++||+.++.. ........+.+|...|.+++|+|.+.. +|++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~----iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN----VLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC----EEEEEe
Confidence 4789999999999998 666 99999999999999975431 112345678899999999999998643 699999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcC-eEEEEEeCCCc-
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAP-IQTVIRIPSGE- 163 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~-v~~v~~~~~~~- 163 (760)
.|+.|++||+.+++.+..+.+|...|.+++|+ +..+++++.|++|++||.+ +.+..+.+|... +..+.|.+++.
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 99999999999999999999999999999997 5669999999999999975 566677788765 34567777654
Q ss_pred EEEEE----CCCcEEEEeCCCc---eEEeecC-CCceEEEEEeCCCe-EEEEe-CCCeEEEEecCC-ceEEEee-cCCCc
Q 004329 164 IVSGS----SDTTIKLWKGKKC---AQTFVGH-TDTVRGLSVMPGVG-IISAS-HDCTIRLWALTG-QVLMEMV-GHTAI 231 (760)
Q Consensus 164 l~tgs----~dg~i~iwd~~~~---~~~~~~h-~~~V~~l~~~~~~~-l~s~s-~dg~I~iwd~~~-~~~~~~~-~h~~~ 231 (760)
+++++ .|+.|++||.++. ......+ ...+....|++++. +++++ .|+.|++||+.. ..+.... .+..+
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 55543 4799999997653 3333323 34455566777665 66666 599999999854 4433332 34556
Q ss_pred EEEEEEeCCC
Q 004329 232 VYSIDSHASG 241 (760)
Q Consensus 232 v~~v~~~p~~ 241 (760)
+.++++.|..
T Consensus 306 ~~g~~~~pk~ 315 (493)
T PTZ00421 306 HKGLCMMPKW 315 (493)
T ss_pred CcceEecccc
Confidence 7788888763
No 105
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=2.8e-21 Score=213.10 Aligned_cols=172 Identities=18% Similarity=0.287 Sum_probs=128.5
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCc---cceeeeEeeCCCCCeEEEEEeCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKR---KYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
.|++.....+..+.+|.+.|.+++|+|+ +. |+|||.||+|+|||+.++... ...+...+.+|...|.+++|+|++
T Consensus 58 L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 58 LENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred eeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 4555555677889999999999999986 44 999999999999999754311 012345678999999999999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
.. ++++++.|++|++||+.+++....+. |...|.+++|+ +..+++++.|+.|++||.. ..+..+.+|.+.+
T Consensus 138 ~~----iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 138 YY----IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred Ce----EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 63 46799999999999999988777665 56778888886 5567778888889999875 4556677777654
Q ss_pred EEE-----EEeCCCc-EEEEECCC----cEEEEeCC
Q 004329 154 QTV-----IRIPSGE-IVSGSSDT----TIKLWKGK 179 (760)
Q Consensus 154 ~~v-----~~~~~~~-l~tgs~dg----~i~iwd~~ 179 (760)
.+. .+++++. +++++.|+ .|++||.+
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 332 2335544 66666553 67788755
No 106
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=6.9e-21 Score=210.04 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=173.5
Q ss_pred EEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc--------eEE
Q 004329 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE--------KVQ 106 (760)
Q Consensus 35 tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~--------~~~ 106 (760)
.|+.++.+++|+..... ....+.+|.+.|.+++|+|+... +|++|+.||+|++||+.++. ++.
T Consensus 49 gGG~~gvI~L~~~~r~~-----~v~~L~gH~~~V~~lafsP~~~~----lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP-----PVIKLKGHTSSILDLQFNPCFSE----ILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred CCCceeEEEeeecCCCc-----eEEEEcCCCCCEEEEEEcCCCCC----EEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 35678889999876432 56678899999999999997432 69999999999999997642 345
Q ss_pred EEeCCCccEEEEEecC--Ce-EEEEECCCeEEEEECCc--eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 004329 107 TLQGHKLQVTGVTLDN--ED-IVSSSVDSTLKRWRKGK--LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK 180 (760)
Q Consensus 107 ~l~~h~~~V~~l~~~~--~~-l~sgs~dg~v~vwd~~~--~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~ 180 (760)
.+.+|...|.+++|++ .. +++++.|++|++||... ....+. |...|.++.|+++|. +++++.|+.|++||.+.
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 6789999999999983 33 67899999999999863 333443 567899999999998 56788899999999664
Q ss_pred --ceEEeecCCCceEEEE-----EeCC-CeEEEEeCCC----eEEEEecC--CceEEEeec--CCCcEEEEEEeCCC-eE
Q 004329 181 --CAQTFVGHTDTVRGLS-----VMPG-VGIISASHDC----TIRLWALT--GQVLMEMVG--HTAIVYSIDSHASG-LI 243 (760)
Q Consensus 181 --~~~~~~~h~~~V~~l~-----~~~~-~~l~s~s~dg----~I~iwd~~--~~~~~~~~~--h~~~v~~v~~~p~~-~l 243 (760)
....+.+|.+.+.+.. ++++ +.+++++.|+ +|++||++ +.++..... +.+.+......+++ ++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 4567888987654433 3354 4488877774 79999986 455544432 33333333344557 88
Q ss_pred EEEeCCCcEEEEe-CCceEEEE---ecCCcEEEEEEccCC
Q 004329 244 VSGSEDRFAKIWK-DGVCVQSI---EHPGCVWDAKFLENG 279 (760)
Q Consensus 244 ~s~s~Dg~I~iwd-~~~~~~~~---~~~~~v~~v~~~~~g 279 (760)
++|+.|+.|++|+ ....+..+ .+..+..+++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 9999999999999 22223333 356688899999863
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.9e-21 Score=183.63 Aligned_cols=243 Identities=18% Similarity=0.317 Sum_probs=196.4
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC--C
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV--D 131 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~--d 131 (760)
...+.+....+.|+++.|++++. ++++++.|.++++||..++++++++..+...+..++|. ...++.++. |
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~-----~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGL-----LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred ccccccccCCCceeEEEecCCCC-----EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence 34455666788999999999998 68899999999999999999999999888888888884 666777776 8
Q ss_pred CeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEE
Q 004329 132 STLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IIS 205 (760)
Q Consensus 132 g~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s 205 (760)
.+|+..++ ++.++.+.+|...|.++..+|-+. +++++.|++|++||++. +...+. ...-...++.|.|. +++
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEE
Confidence 89999876 588999999999999999999765 99999999999999773 333333 33334578899887 666
Q ss_pred EeCCCeEEEEecC---CceEEEee---cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCC---cEEE
Q 004329 206 ASHDCTIRLWALT---GQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG---CVWD 272 (760)
Q Consensus 206 ~s~dg~I~iwd~~---~~~~~~~~---~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~---~v~~ 272 (760)
+.....|++||++ ..+..++. +.......+.|+|+| .++.+...+.+++.| .|...+++. ++. -...
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 6666699999974 44555544 346788999999999 888889999999999 888888886 322 2368
Q ss_pred EEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 273 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 273 v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.+|.||++ +++|+.||+|.+|+++++..+....
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 89999999 6777778999999999998776544
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.6e-20 Score=190.97 Aligned_cols=342 Identities=17% Similarity=0.237 Sum_probs=249.4
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCC--------eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCC
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDR--------TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg--------~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 82 (760)
.+.+.||..+|.|+..+|+.. +++|-.-| .+|+||..+-. ....+-.....|.|++|++.+..
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----TL~V~g~f~~GV~~vaFsk~~~G--- 168 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----TLHVIGFFDRGVTCVAFSKINGG--- 168 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----eeeeeccccccceeeeecccCCC---
Confidence 355679999999999999987 77665444 59999966433 45556667888999999987652
Q ss_pred cEEEEE--eCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-----ceeEEeecC-CcC
Q 004329 83 GGLVSG--GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-----KLVEFWEAH-NAP 152 (760)
Q Consensus 83 ~~l~sg--s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~-~~~ 152 (760)
.+++.. +.+..+.+||.+.+......+..+..|....|+ +..++.....|.+.+|+.. +....++.+ ..-
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence 133332 456678999999888777777778888888897 5557777778999999764 222333333 467
Q ss_pred eEEEEEeCCCcEEEEECCCcEEEEeCCCc--eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCC-----------
Q 004329 153 IQTVIRIPSGEIVSGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTG----------- 219 (760)
Q Consensus 153 v~~v~~~~~~~l~tgs~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~----------- 219 (760)
|.|++|.++|.+++|..+|.|.+|+.+.+ .+....|.+.|.+++...++.+++|+.|+.|..||-.-
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchh
Confidence 99999999999999999999999996543 33444899999999999999999999999999998300
Q ss_pred ------------------------------ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeCCceEEEEecCC
Q 004329 220 ------------------------------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGVCVQSIEHPG 268 (760)
Q Consensus 220 ------------------------------~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 268 (760)
.......+|......++.+|+. .+++++.|+.+++|+..++..+.....
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 0111234788888999999998 999999999999999878888888888
Q ss_pred cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-----cceEEeccccCceeeecCC-----------
Q 004329 269 CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-----SQYKLCRKKVGGLKLEDLP----------- 332 (760)
Q Consensus 269 ~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~i~~~~l~----------- 332 (760)
+..|+.|+|.|.++.|...|...+.|.++..++..-.-.+....+ ..+...++.++.+.++.++
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 889999999888888888999999998886554322211111111 1344455556666665543
Q ss_pred --CCceeeccCCCcceEEEEeeCCceEEEEEe
Q 004329 333 --GLEALQIPGTNAGQTKVVREGDNGVAYSWD 362 (760)
Q Consensus 333 --~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~ 362 (760)
+.....+.++.|++..+..++| ..+..|.
T Consensus 489 ~~gs~ithLDwS~Ds~~~~~~S~d-~eiLyW~ 519 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDSQFLVSNSGD-YEILYWK 519 (626)
T ss_pred ecCceeEEeeecCCCceEEeccCc-eEEEEEc
Confidence 3223345566777666555555 5555663
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.7e-21 Score=184.68 Aligned_cols=257 Identities=22% Similarity=0.366 Sum_probs=196.9
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
.+|.+-|.|+.|.+-|+ ++|||.|++|+|||.+ .....+.+....+.|.+.|..+.|.+..- ...+++++.|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~-~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf---GqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDST-SDSGTWSCTSSWRAHDGSIWRVVWAHPEF---GQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEecc-CCCCceEEeeeEEecCCcEEEEEecCccc---cceEEEEecCCce
Confidence 48999999999999998 9999999999999975 34467888889999999999999987643 2379999999999
Q ss_pred EEEECCCC---------ceEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECCc--------eeEEee------
Q 004329 95 LVWDLGSG---------EKVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKGK--------LVEFWE------ 147 (760)
Q Consensus 95 ~vwd~~~~---------~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~--------~~~~~~------ 147 (760)
.||.-... ....++......|+.+.|. +-.+++++.||++|||+.-. ....++
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99976211 2345567788899999997 33499999999999996421 111122
Q ss_pred -cCCcCeEEEEEeCCCc----EEEEECC-----CcEEEEeCCC----c--eEEeecCCCceEEEEEeCC--C---eEEEE
Q 004329 148 -AHNAPIQTVIRIPSGE----IVSGSSD-----TTIKLWKGKK----C--AQTFVGHTDTVRGLSVMPG--V---GIISA 206 (760)
Q Consensus 148 -~~~~~v~~v~~~~~~~----l~tgs~d-----g~i~iwd~~~----~--~~~~~~h~~~V~~l~~~~~--~---~l~s~ 206 (760)
.+..+..|+.|++... ++.|+.+ +.+.||...+ . +..+.+|+++|+.++|.|+ . .++++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 3566788999997532 5556554 4788886332 2 2356689999999999993 2 28999
Q ss_pred eCCCeEEEEecCC---------------------ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-----CCc
Q 004329 207 SHDCTIRLWALTG---------------------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGV 259 (760)
Q Consensus 207 s~dg~I~iwd~~~---------------------~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-----~~~ 259 (760)
+.|| |+||.+.. +.+..+.+|.+.|..+.|+-.| .|.+.|.||.||+|. ..+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 9999 99998742 2344566899999999999999 999999999999997 445
Q ss_pred eEEEEecCCcEEEEEEcc
Q 004329 260 CVQSIEHPGCVWDAKFLE 277 (760)
Q Consensus 260 ~~~~~~~~~~v~~v~~~~ 277 (760)
|...+...+.+..-.|++
T Consensus 325 C~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 325 CTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred eeeEEeccCCCCCccccc
Confidence 776776655555555443
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.3e-21 Score=206.02 Aligned_cols=288 Identities=23% Similarity=0.400 Sum_probs=215.7
Q ss_pred CCceEeEEeccCCCCEEEEEEcCC-C--e-EEEEECCCeEEEEeCCCCCC----------------ccceee--------
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDN-V--G-IATSSRDRTVRFWSLDPSDK----------------RKYHSS-------- 58 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~-~--~-l~tgs~Dg~i~iWd~~~~~~----------------~~~~~~-------- 58 (760)
.+|+...++.||.+.|++++|... + . |+|+|.|..||||.+.-+.. +.+...
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 468899999999999999999843 2 2 99999999999998743220 111111
Q ss_pred --eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc---------------------------------
Q 004329 59 --KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE--------------------------------- 103 (760)
Q Consensus 59 --~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~--------------------------------- 103 (760)
..+.||.+.|+++.|+|.+. .|++++.|.++.+|...+..
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~-----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGL-----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred hhhhhcCcccceEEEEEccchh-----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 23459999999999999985 38899999999999764321
Q ss_pred -------------------eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC------ceeEEeecCCcCeEEE
Q 004329 104 -------------------KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG------KLVEFWEAHNAPIQTV 156 (760)
Q Consensus 104 -------------------~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~------~~~~~~~~~~~~v~~v 156 (760)
....+.||...|..++|+ +.++++.+.|.+-|++-.. ..+...+.|...++|+
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 001123677778888887 7778888888888887443 3444456677888888
Q ss_pred EEeC-CCcEEEEECCCcEEEEeCCCc------------------------------------------------------
Q 004329 157 IRIP-SGEIVSGSSDTTIKLWKGKKC------------------------------------------------------ 181 (760)
Q Consensus 157 ~~~~-~~~l~tgs~dg~i~iwd~~~~------------------------------------------------------ 181 (760)
++.+ +-++++|...+.+|+|+..+.
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 8887 445778888888888752110
Q ss_pred ------------------------eEEeecCCCceEEEEEeCCCe-EEEEeCC-----CeEEEEecCC-ceEEEeecCCC
Q 004329 182 ------------------------AQTFVGHTDTVRGLSVMPGVG-IISASHD-----CTIRLWALTG-QVLMEMVGHTA 230 (760)
Q Consensus 182 ------------------------~~~~~~h~~~V~~l~~~~~~~-l~s~s~d-----g~I~iwd~~~-~~~~~~~~h~~ 230 (760)
++.+.+|.-.|.+++.+|++. +++++.. ..|++|+... ...+.+.+|.-
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 012237888899999999777 6666543 4599999654 45567899999
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEeC-Cce-----EE-EEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWKD-GVC-----VQ-SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd~-~~~-----~~-~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.|+.++|+|+| +|++.+.|+++.+|.. ... .. .-.|..-||++.|+|++. ++|++.|.+|+||.....+
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 99999999999 9999999999999981 111 11 123888999999999999 9999999999999998873
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-20 Score=196.62 Aligned_cols=269 Identities=17% Similarity=0.276 Sum_probs=222.7
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
-...|+|++|+.+.. ||.+-.||.|.||++..+ +.....+.++ ...|.+++|++.+. |++.+.+|.|.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----w~~~~vi~g~~drsIE~L~W~e~~R------LFS~g~sg~i~ 93 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----WFLEPVIHGPEDRSIESLAWAEGGR------LFSSGLSGSIT 93 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC----ceeeEEEecCCCCceeeEEEccCCe------EEeecCCceEE
Confidence 467899999998777 999999999999999843 5666777776 57899999997665 99999999999
Q ss_pred EEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCcee----EEeecCCcCeEEEEEeCCCc-EEEEE
Q 004329 96 VWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLV----EFWEAHNAPIQTVIRIPSGE-IVSGS 168 (760)
Q Consensus 96 vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~~~v~~v~~~~~~~-l~tgs 168 (760)
-||+.++++...+....+.|++++.+ +..++.|+.||.+..++.+... ..+...++.|.++.|.+++. +++||
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 99999999999999999999999997 5569999999977777765322 23445578999999999998 99999
Q ss_pred CCCcEEEEeCCCceEEe----------ecCCCceEEEEEeCCCeEEEEeCCCeEEEEe-cCCceEEEeecCCCcEEEEEE
Q 004329 169 SDTTIKLWKGKKCAQTF----------VGHTDTVRGLSVMPGVGIISASHDCTIRLWA-LTGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 169 ~dg~i~iwd~~~~~~~~----------~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~v~~v~~ 237 (760)
.||.|++||..++.... +.....|+++.+..++.+++|..-|+|.+|| ..+..++.+..|...|.+++.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 99999999966543322 1134458899999899999999999999999 468888899999999999999
Q ss_pred eCCC-eEEEEeCCCcEEEEe-CCc---eEEE---EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCC
Q 004329 238 HASG-LIVSGSEDRFAKIWK-DGV---CVQS---IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 238 ~p~~-~l~s~s~Dg~I~iwd-~~~---~~~~---~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~ 297 (760)
.+++ +++++|-|+.|.-+. .+. -+.. ..|+..|.+++..++ .+++|+.|+.+.+-....
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSRE 320 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccccc
Confidence 9998 999999999999887 222 1111 127779999999877 689999999998876655
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=196.90 Aligned_cols=236 Identities=19% Similarity=0.381 Sum_probs=200.1
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceE----EE-------------E-eCCCccEEEEE
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV----QT-------------L-QGHKLQVTGVT 119 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~----~~-------------l-~~h~~~V~~l~ 119 (760)
...+..|..+|.|++++|++. +.++++.+|+|.-|++.+++.. .. - ++|...+.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-----~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-----RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred ceeeccccCcceEEEeecccc-----ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 456778999999999999988 6999999999999999887532 01 0 26778899998
Q ss_pred ec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC-CcEEEEECCCcEEEEeCCC--ceEEeecCCCce
Q 004329 120 LD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS-GEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTV 192 (760)
Q Consensus 120 ~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V 192 (760)
.+ +.++++|+.|..|.||+.. +.+..+.+|.+.|.+++|-.. .++++++.|+.+++|+... .+.++.+|.+.|
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 86 6779999999999999764 777889999999999999875 4499999999999999664 556888999999
Q ss_pred EEEEEeCCCeEEE-EeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe--c-
Q 004329 193 RGLSVMPGVGIIS-ASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE--H- 266 (760)
Q Consensus 193 ~~l~~~~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~--~- 266 (760)
.+|....-.+.++ |+.|+++++|++..+....+.+|.+.+-|++|-.+..+++|+.||.|.+|+ ..+++.+.. |
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 9999987666554 559999999999888788888999999999999888999999999999999 445554443 2
Q ss_pred ----------CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 267 ----------PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 267 ----------~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+.+|++++..|..+ +++|+.+|.||+|.+.++
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 23789999999988 788888999999999987
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=2.3e-21 Score=214.98 Aligned_cols=243 Identities=23% Similarity=0.332 Sum_probs=200.0
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCC----------C---CCccceeeeEeeCCCCCeEEEEEe
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDP----------S---DKRKYHSSKILLGHTSFVGPLAWI 74 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~----------~---~~~~~~~~~~~~~h~~~V~~l~~~ 74 (760)
-+++.+...|.+.|+|+.|++||+ ||+||.|+.|.||.... + ....|.....+.+|.+.|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 356677889999999999999999 99999999999999872 0 113566788899999999999999
Q ss_pred CCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc--eeEEeecC-
Q 004329 75 SPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK--LVEFWEAH- 149 (760)
Q Consensus 75 ~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~--~~~~~~~~- 149 (760)
|++. ++++++.|++|.+||..+.+.+.++++|.+.|..+.|+ +.+|++-+.|+++++|++.. ..+.+..+
T Consensus 139 p~~~-----~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 139 PDDS-----LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CCcc-----EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9887 79999999999999999999999999999999999998 88999999999999998653 44444333
Q ss_pred -----CcCeEEEEEeCCCcEE-EEE----CCCcEEEEe--CCCceEEeecCCCceEEEEEeC------CC----------
Q 004329 150 -----NAPIQTVIRIPSGEIV-SGS----SDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMP------GV---------- 201 (760)
Q Consensus 150 -----~~~v~~v~~~~~~~l~-tgs----~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~------~~---------- 201 (760)
..-...+.|+|||.++ +.- .-.++.|.+ ..+....+.+|..++.++.|+| ..
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 3346788999999944 322 234577776 3356678899999999999998 12
Q ss_pred --eEEEEeCCCeEEEEec-CCceEEEee-cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 202 --GIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 202 --~l~s~s~dg~I~iwd~-~~~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+++|+.|++|.||.. ..+++.... -....|..++|+||| .|+++|.||+|.+..
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 3689999999999995 334443332 246789999999999 999999999999986
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=198.64 Aligned_cols=243 Identities=20% Similarity=0.310 Sum_probs=197.8
Q ss_pred ccccCCC--ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKE--YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~--~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..|+... +.++.+|.|..+.|+++.|.++++ +++++.|+.+++|+++... ...++.+|.+.|+++.|.....
T Consensus 200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtdkVt~ak~~~~~~ 274 (459)
T KOG0288|consen 200 KLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTDKVTAAKFKLSHS 274 (459)
T ss_pred hhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----hhhhhcccccceeeehhhcccc
Confidence 4566544 558999999999999999999998 9999999999999998655 6778899999999999987765
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTV 156 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v 156 (760)
.+++|+.|.+|+.||+....+.+++- ....+..|..+...+++|..|+.|++||.+ .+......+. .|+++
T Consensus 275 -----~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl 347 (459)
T KOG0288|consen 275 -----RVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSL 347 (459)
T ss_pred -----ceeeccccchhhhhhhhhhheecccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeE
Confidence 38999999999999999888877654 234455566666779999999999999975 5555555554 89999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCCCc--eEEeec----CCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeec
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKGKKC--AQTFVG----HTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVG 227 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~~~~--~~~~~~----h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~ 227 (760)
..++++. +++++.|.++.++|.+.. .+.+.. .....+.+.|+|++. +++||.||.|+||++ ++++...+..
T Consensus 348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 9999987 889999999999996642 333332 123378899999776 899999999999996 5566666654
Q ss_pred CCC--cEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 228 HTA--IVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 228 h~~--~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
... .|+++.|+|.| .+++++.++.+.+|.
T Consensus 428 s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 433 69999999999 999999999999993
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=8.1e-22 Score=199.86 Aligned_cols=273 Identities=16% Similarity=0.291 Sum_probs=220.7
Q ss_pred cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 17 GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
.|..-|.++.++...+ +.||++ |.|+|||+.....+..........-...|.++..+|++. .|++|+.-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-----tLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-----TLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-----eEEeccccceee
Confidence 5888899999997777 888886 789999997433211111111223468899999999998 589999999999
Q ss_pred EEECCCCceEEE--EeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEE
Q 004329 96 VWDLGSGEKVQT--LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGS 168 (760)
Q Consensus 96 vwd~~~~~~~~~--l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs 168 (760)
|||+....+.-. +......+.+++.+ .+..++++.||.|.|||+. ..++.+++|.+.+.||.++++|. +.+|+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence 999976654322 33323344555665 5558999999999999985 67788999999999999999988 99999
Q ss_pred CCCcEEEEeCCCceEEee-cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEE
Q 004329 169 SDTTIKLWKGKKCAQTFV-GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 169 ~dg~i~iwd~~~~~~~~~-~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s 245 (760)
-|++||.||.++..+..+ .....|.++..+|.+. ++.|-..+.+-+...++.....+.-|.+.|.++.|.+.| ++++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeee
Confidence 999999999877554332 2457899999999554 999999999999999998888899999999999999999 9999
Q ss_pred EeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 246 GSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 246 ~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
.+.|..+..|. -|..+.......+|.++..+.|.+ ++||+.|..-.||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999 455555555667999999999988 889999988888865
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.8e-21 Score=193.79 Aligned_cols=290 Identities=16% Similarity=0.268 Sum_probs=222.9
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
++|+..+......+-|.++|++++|+|... +++|..-|.|-+||+.+. .+...-...+..|..+|.++.|+|.+..
T Consensus 170 dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~-~~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 170 DLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ-EKDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCC-CCccCceEEeccCCccccceEecCCChh
Confidence 467778888889999999999999998654 899999999999999633 3344456677889999999999999875
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCce--EEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC---ceeEEeecCCcC
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEK--VQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAP 152 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~ 152 (760)
.+++.+.||+|+.-|++++.. +..+.......+++.++ +..++.+..=|...+||.+ .....+..|...
T Consensus 249 ----~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 249 ----QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred ----heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 499999999999999987643 34444355566677776 4457777777799999875 445667789899
Q ss_pred eEEEEEeCCCc--EEEEECCCcEEEEeCCCc------eEEeecCCCceEEEEEeC-CCeEEEEeCCCeEEEEecC----C
Q 004329 153 IQTVIRIPSGE--IVSGSSDTTIKLWKGKKC------AQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALT----G 219 (760)
Q Consensus 153 v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~------~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~----~ 219 (760)
|++++++|... ++|++.|++.+|||+++. ......|...|.+..|+| ++.+++.+.|..|+|||.. .
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999999765 899999999999996642 234457999999999999 5559999999999999962 2
Q ss_pred ceEEEeecCCC------cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC--cEEE-EEEccCCc-EEEEEc
Q 004329 220 QVLMEMVGHTA------IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG--CVWD-AKFLENGD-IVTACS 286 (760)
Q Consensus 220 ~~~~~~~~h~~------~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~--~v~~-v~~~~~g~-lvt~~~ 286 (760)
.+......|.. ......|.|+. ++++|-.-..|-|+| .++.+..+..+. .|.+ ..|+|-+. +++|+.
T Consensus 405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence 22222223332 23456799988 999999999999999 445456654333 4444 47889887 666665
Q ss_pred -CCcEEEEeCCC
Q 004329 287 -DGVTRIWTVHS 297 (760)
Q Consensus 287 -dg~I~vw~~~~ 297 (760)
.|.|+||.-+.
T Consensus 485 s~Gki~vft~k~ 496 (498)
T KOG4328|consen 485 SSGKIYVFTNKK 496 (498)
T ss_pred ccceEEEEecCC
Confidence 89999997654
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=197.75 Aligned_cols=268 Identities=18% Similarity=0.299 Sum_probs=207.3
Q ss_pred ccccCCCceEeEEeccC-CCCEEEEEEcCCCeEEEE-ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 2 MDIDFKEYQLSSELRGH-EDDVRGICVCDNVGIATS-SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH-~~~V~~v~~~~~~~l~tg-s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
.+||+.++....++++. ...-.++.......++++ ..-..+.+|.+..... .....--.++|.|++-+|.+.
T Consensus 21 ~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~-----~~q~~v~Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 21 IVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQ-----VVQYIVLPGPVHALASSNLGY- 94 (476)
T ss_pred eEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhh-----hhhhcccccceeeeecCCCce-
Confidence 46888888888887765 333333333333334444 4456899999863331 112223467899999999887
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC-----------CceeEEe
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK-----------GKLVEFW 146 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~-----------~~~~~~~ 146 (760)
+++.|+..|.|++|.+.+|+.+..+.+|-..|+|+.|+ +..|++|+.||.|.+|.+ -++.+.|
T Consensus 95 ----~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 95 ----FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred ----EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 57777799999999999999999999999999999997 556999999999999953 2677889
Q ss_pred ecCCcCeEEEEEeCCC---cEEEEECCCcEEEEeCCCceEEe-ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC---
Q 004329 147 EAHNAPIQTVIRIPSG---EIVSGSSDTTIKLWKGKKCAQTF-VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT--- 218 (760)
Q Consensus 147 ~~~~~~v~~v~~~~~~---~l~tgs~dg~i~iwd~~~~~~~~-~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--- 218 (760)
..|.-+|+++...+.| +++++|.|.++++||+....... ......+.++++.|..+ ++.|+.+|.|.+.++.
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 9999999999888753 49999999999999965433322 23567899999999555 9999999999988752
Q ss_pred --------------CceEEEeecCCC--cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccC
Q 004329 219 --------------GQVLMEMVGHTA--IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN 278 (760)
Q Consensus 219 --------------~~~~~~~~~h~~--~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~ 278 (760)
+..+..+.||.. .|+|++++-|| +|++|+.||.|+||| ...+++++. ..++|+.+.+.|-
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 234556678887 99999999999 999999999999999 778888888 6679999988664
Q ss_pred C
Q 004329 279 G 279 (760)
Q Consensus 279 g 279 (760)
-
T Consensus 331 ~ 331 (476)
T KOG0646|consen 331 E 331 (476)
T ss_pred c
Confidence 3
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-20 Score=174.66 Aligned_cols=221 Identities=19% Similarity=0.275 Sum_probs=189.6
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEE
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vw 137 (760)
.+++|+.+++.+.|+.+++ +|++++.|.+..+|-..+|+.+.++.+|.+.|+|+..+ ...+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGD-----LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-----LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCc-----EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 5689999999999999998 79999999999999999999999999999999999887 5669999999999999
Q ss_pred ECC--ceeEEeecCCcCeEEEEEeCCCcEEEEECC------CcEEEEeCC---------CceEEeecCCCceEEEEEeCC
Q 004329 138 RKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSD------TTIKLWKGK---------KCAQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 138 d~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~d------g~i~iwd~~---------~~~~~~~~h~~~V~~l~~~~~ 200 (760)
|.. +++..++ ...+|+.+.|+.+|.++..+.| +.|.++|++ .+...+..+.+.++..-|.|-
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 974 6666654 4568999999999996665554 568888855 345677778899999999994
Q ss_pred -CeEEEEeCCCeEEEEecC-C-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEE
Q 004329 201 -VGIISASHDCTIRLWALT-G-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 274 (760)
Q Consensus 201 -~~l~s~s~dg~I~iwd~~-~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~ 274 (760)
..+++|..||.|.+||.. | +.+.....|...|+.+.++++. ++++++.|.+-++|| +-.++.++....+|++.+
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 459999999999999975 4 4455557899999999999999 999999999999999 667888888999999999
Q ss_pred EccCCc-EEEEEc
Q 004329 275 FLENGD-IVTACS 286 (760)
Q Consensus 275 ~~~~g~-lvt~~~ 286 (760)
++|..+ ++.|+.
T Consensus 239 isP~~d~VilgGG 251 (327)
T KOG0643|consen 239 ISPLLDHVILGGG 251 (327)
T ss_pred cccccceEEecCC
Confidence 999877 454444
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=3e-21 Score=196.66 Aligned_cols=243 Identities=19% Similarity=0.204 Sum_probs=187.1
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc----eEEEE-eCCCccEEEEEec--CCeEEEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE----KVQTL-QGHKLQVTGVTLD--NEDIVSSS 129 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~----~~~~l-~~h~~~V~~l~~~--~~~l~sgs 129 (760)
....+.+|+..|.++++.|.+. .+++|+.|-.|++||+.... ..+.+ ......|.++.|+ ++.|++.+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~Ga-----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGA-----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred ceEeccCCceEEEEeeecCCCc-----eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3456788999999999999998 69999999999999996432 12222 2455678888887 78899999
Q ss_pred CCCeEEEEECC-c-------------eeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC---ceEEee----
Q 004329 130 VDSTLKRWRKG-K-------------LVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK---CAQTFV---- 186 (760)
Q Consensus 130 ~dg~v~vwd~~-~-------------~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~---~~~~~~---- 186 (760)
.....+++|-. . -....++|...++|.+|+|.++ +++++.||++|+||... ..+.++
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 99999999753 1 1123468999999999999865 99999999999999553 223332
Q ss_pred -cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCce----EEEeecCCC--cEEEEEEeCCC-eEEEEeCCCcEEEEe-
Q 004329 187 -GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQV----LMEMVGHTA--IVYSIDSHASG-LIVSGSEDRFAKIWK- 256 (760)
Q Consensus 187 -~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~----~~~~~~h~~--~v~~v~~~p~~-~l~s~s~Dg~I~iwd- 256 (760)
+..-++++++|++++. +++|+.||.|.+|+..+.. ...-..|.. .|+||.|+++| +|++-|.|+++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 3456789999999887 8999999999999964332 222336776 99999999999 999999999999999
Q ss_pred --CCceEEEEe---cCCcEEEEEEccCCc-EEEEEc------CCcEEEEeCCCCeeechh
Q 004329 257 --DGVCVQSIE---HPGCVWDAKFLENGD-IVTACS------DGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 257 --~~~~~~~~~---~~~~v~~v~~~~~g~-lvt~~~------dg~I~vw~~~~~~~~~~~ 304 (760)
..+++.... ..-+-+.++|+|+.+ +++|++ .|.+.+||..+-..++.+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 334444333 334778999999999 667665 578999998877665544
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1e-20 Score=182.20 Aligned_cols=233 Identities=18% Similarity=0.246 Sum_probs=187.6
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 82 (760)
.||.+...+...+ .|+.++.+++|.++..+++|+.||.|+.+|+.++. ...+..|..+|.|+.+++...
T Consensus 39 lYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~------~~~igth~~~i~ci~~~~~~~---- 107 (323)
T KOG1036|consen 39 LYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN------EDQIGTHDEGIRCIEYSYEVG---- 107 (323)
T ss_pred EEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCc------ceeeccCCCceEEEEeeccCC----
Confidence 3555555444444 49999999999998889999999999999999775 446677999999999997655
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEee----cCCcCeEEEEE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWE----AHNAPIQTVIR 158 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~----~~~~~v~~v~~ 158 (760)
.+++||.|++|++||.+.......+.. ...|.++...++.|+.|+.|..+.+||++.+...++ .-+..++|++.
T Consensus 108 -~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~ 185 (323)
T KOG1036|consen 108 -CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL 185 (323)
T ss_pred -eEEEcccCccEEEEecccccccccccc-CceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE
Confidence 699999999999999987555555553 348999999999999999999999999975554442 33567899999
Q ss_pred eCCCc-EEEEECCCcEEEE--eCC----CceEEeecCC---------CceEEEEEeC-CCeEEEEeCCCeEEEEec-CCc
Q 004329 159 IPSGE-IVSGSSDTTIKLW--KGK----KCAQTFVGHT---------DTVRGLSVMP-GVGIISASHDCTIRLWAL-TGQ 220 (760)
Q Consensus 159 ~~~~~-l~tgs~dg~i~iw--d~~----~~~~~~~~h~---------~~V~~l~~~~-~~~l~s~s~dg~I~iwd~-~~~ 220 (760)
.|++. +++++-||.|.+= |.. .....|+.|. -+|++|+|+| .+.|+||+.||.|.+||+ ..+
T Consensus 186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 99766 9999999998774 433 2333566664 3699999999 455999999999999996 456
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEEeC
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSGSE 248 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~s~ 248 (760)
.+..+......|.+++|+.+| .||.++.
T Consensus 266 rl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 266 RLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 677777777889999999999 7777763
No 121
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=176.72 Aligned_cols=246 Identities=21% Similarity=0.305 Sum_probs=202.1
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE--EeCCCccEEEEEec---CCeEEEEECCCe
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT--LQGHKLQVTGVTLD---NEDIVSSSVDST 133 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~---~~~l~sgs~dg~ 133 (760)
..+.+|...|.+++|+-++. .+++|+.|+++.+|+++..+.... ..+|.+.|-.++|+ ++.+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-----~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-----KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-----eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 45678999999999999998 599999999999999987755443 56899999999996 667999999999
Q ss_pred EEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE-EeecCCCceEEEEEeCCCe-EEEEeC
Q 004329 134 LKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ-TFVGHTDTVRGLSVMPGVG-IISASH 208 (760)
Q Consensus 134 v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~-~~~~h~~~V~~l~~~~~~~-l~s~s~ 208 (760)
|++||.+ ++........+.+ -+.|+|+|. ++++..|..|.+.|.++... .-......+..++|+.++. |+....
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecC
Confidence 9999975 6666665555555 577888876 88999999999999765433 2223445677888876444 566666
Q ss_pred CCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EE
Q 004329 209 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IV 282 (760)
Q Consensus 209 dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lv 282 (760)
-|.|.|... .-++++.+..|.....||.|+|+| +|++|+.|..+.+|| .--|.+.+. +.-+|..+.|+.||+ |+
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 699999985 568899999999999999999999 999999999999999 445777776 666999999999999 88
Q ss_pred EEEcCCcEEEEeCCCCeeechhhhhhhh
Q 004329 283 TACSDGVTRIWTVHSDKVADSLELEAYA 310 (760)
Q Consensus 283 t~~~dg~I~vw~~~~~~~~~~~~~~~~~ 310 (760)
+++.|..|-|=++++|..+..+..++..
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPT 275 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCc
Confidence 9999999999999999988877655443
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=6.7e-21 Score=182.62 Aligned_cols=239 Identities=21% Similarity=0.296 Sum_probs=152.6
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC------------------ceEEEEeCCCccEEE
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG------------------EKVQTLQGHKLQVTG 117 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~------------------~~~~~l~~h~~~V~~ 117 (760)
.....+..|+.++.+.+|++++. ++++|+.|..|++.|++.. ..++++-.|..+|++
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 34566788999999999999998 7999999999999998621 235556667777777
Q ss_pred EEecC--CeEEEEECCCeEEEEECCceeE----EeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE-----Ee
Q 004329 118 VTLDN--EDIVSSSVDSTLKRWRKGKLVE----FWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ-----TF 185 (760)
Q Consensus 118 l~~~~--~~l~sgs~dg~v~vwd~~~~~~----~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~-----~~ 185 (760)
+.|++ ..|++|+.|++|+++|..+... ..-....+|.++.|+|.|. ++.|..-.++++||..+... .-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 77763 3377777777777777653211 1112345677777777776 44566666777777554322 22
Q ss_pred ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEe-cCCceEEEee-cCC-CcEEEEEEeCCC-eEEEEeCCCcEEEEe--CC
Q 004329 186 VGHTDTVRGLSVMPGVG-IISASHDCTIRLWA-LTGQVLMEMV-GHT-AIVYSIDSHASG-LIVSGSEDRFAKIWK--DG 258 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd-~~~~~~~~~~-~h~-~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~ 258 (760)
..|++.|+++.+++.+. +++++.||.|++|| +.++++.++. .|. ..|.+..|..++ ++++.|.|..+++|. ++
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 34667777777777554 66777777777777 5666666654 343 356666677777 777777777777777 66
Q ss_pred ceEEEEecCC------cEEEEEEccCCcEEEE-E-cCCcEEEEeCCCCe
Q 004329 259 VCVQSIEHPG------CVWDAKFLENGDIVTA-C-SDGVTRIWTVHSDK 299 (760)
Q Consensus 259 ~~~~~~~~~~------~v~~v~~~~~g~lvt~-~-~dg~I~vw~~~~~~ 299 (760)
.++......+ .-+...|+...+++.- . ..+.+.-||.+++.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 6666554221 2233445555442221 1 24566666666544
No 123
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1e-20 Score=189.28 Aligned_cols=245 Identities=19% Similarity=0.283 Sum_probs=207.2
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..+|.++.++..+|+||...|+.+.++++.. +++++.|..|+||...... +......|..+|+.+..+|.+.
T Consensus 244 v~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----~~~~~~~h~~~V~~ls~h~tge-- 316 (506)
T KOG0289|consen 244 VLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----EPTSSRPHEEPVTGLSLHPTGE-- 316 (506)
T ss_pred EEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----CccccccccccceeeeeccCCc--
Confidence 3568888999999999999999999999988 9999999999999987544 5566788999999999999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeC--CCccEEEEEec-CCe-EEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQG--HKLQVTGVTLD-NED-IVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~--h~~~V~~l~~~-~~~-l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
|+++++.||+..+.|++++..+..... ..-.+++..|+ ++. |.+|+.||.+++||+. .....|.+|.++|.
T Consensus 317 ---YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 317 ---YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred ---EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 799999999999999999988776653 33468899998 444 8899999999999985 56778899999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCce--EEeec-CCCceEEEEEeCCCe-EEEEeCCCeEEEEec---CCceEEEee
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKCA--QTFVG-HTDTVRGLSVMPGVG-IISASHDCTIRLWAL---TGQVLMEMV 226 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~~--~~~~~-h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~---~~~~~~~~~ 226 (760)
.+.|+.+|. +++++.|+.|++||+++.. +++.- ....+.+++|.+.+. ++.+++|=+|++++- +-.++..+.
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 999999999 8899999999999988643 33432 234799999998655 888888888888873 335666777
Q ss_pred cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.|.+..+++.|.... +++++|.|..++++.
T Consensus 474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hcccccceeeecccceEEeeccchhheEEee
Confidence 888899999998887 999999999988874
No 124
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=2e-19 Score=193.41 Aligned_cols=354 Identities=15% Similarity=0.238 Sum_probs=262.4
Q ss_pred ccccCCC-----ceEeEEeccCCCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE
Q 004329 2 MDIDFKE-----YQLSSELRGHEDDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73 (760)
Q Consensus 2 ~~~d~~~-----~~l~~~l~gH~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~ 73 (760)
++|+... |..+.-++.-.+.|+++. +|... ++.|+.+|.+.+|++.+++ .+.++.++...|+++.=
T Consensus 137 ~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-----~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 137 FVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-----VVYTFQEFFSRITAIEQ 210 (910)
T ss_pred EEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc-----EEEEecccccceeEecc
Confidence 4566554 333233343334488886 45433 9999999999999999887 78889999999999998
Q ss_pred eCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCe-EEEEECCCeEEEEECCc--eeEE-ee
Q 004329 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NED-IVSSSVDSTLKRWRKGK--LVEF-WE 147 (760)
Q Consensus 74 ~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~~--~~~~-~~ 147 (760)
+|--+ .++.|..+|+|.+++++.++.+.+++...+.|++++|. +.. +++|+..|.+.+||+++ .+.. ..
T Consensus 211 sPaLD-----VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 211 SPALD-----VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred CCcce-----EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 88776 79999999999999999999999999657999999996 333 88888889999999863 3333 34
Q ss_pred cCCcCeEEEEEeCCCc-EEEEECCCcEEEE--eCC----CceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEec-
Q 004329 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLW--KGK----KCAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWAL- 217 (760)
Q Consensus 148 ~~~~~v~~v~~~~~~~-l~tgs~dg~i~iw--d~~----~~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~- 217 (760)
.|.+.|....+.+... +++.+.|+.+++| |.. ...+.-.||..+..++.|.. +++ +.+++.|++.+.+++
T Consensus 286 ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 286 AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhh
Confidence 7889999999998776 7799999999998 422 34556678999999999874 444 888888888777764
Q ss_pred ----------------------------------------------------------------CCceEEE-eecCC---
Q 004329 218 ----------------------------------------------------------------TGQVLME-MVGHT--- 229 (760)
Q Consensus 218 ----------------------------------------------------------------~~~~~~~-~~~h~--- 229 (760)
+.+.... ...+.
T Consensus 366 ~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 366 SESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred HHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 0000000 00122
Q ss_pred ---CcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE----ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 230 ---AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI----EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 230 ---~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~----~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
..+++++.++.| +.+.|...|.|-+|+ .|-....+ .|.++|++++...-++ +++++.+|.+++||+...
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 567899999999 888999999999999 66666666 4888999999988777 899999999999999999
Q ss_pred eeechhhhhhhhhcc-----cceEEeccccCceeeecCCCCc-----------eeeccCCCcceEEEEeeCCceEEEEEe
Q 004329 299 KVADSLELEAYASEL-----SQYKLCRKKVGGLKLEDLPGLE-----------ALQIPGTNAGQTKVVREGDNGVAYSWD 362 (760)
Q Consensus 299 ~~~~~~~~~~~~~~~-----~~~~~~~~~~g~i~~~~l~~~~-----------~l~~~g~~~g~~~~v~~~~~~~~~~w~ 362 (760)
.+...+.+......+ +.....+..+-.|.+.|..... ......++||.+.+..+-| ..+..||
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-~tIr~wD 604 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-STIRTWD 604 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-CcEEEEe
Confidence 877777655444333 2223334444566777765332 2333455677777666555 7888999
Q ss_pred ccccc
Q 004329 363 MKEQK 367 (760)
Q Consensus 363 ~~~~~ 367 (760)
...+.
T Consensus 605 lpt~~ 609 (910)
T KOG1539|consen 605 LPTGT 609 (910)
T ss_pred ccCcc
Confidence 87764
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.1e-19 Score=185.52 Aligned_cols=353 Identities=16% Similarity=0.221 Sum_probs=252.7
Q ss_pred cccCC-CceEeEEeccCC-CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 3 DIDFK-EYQLSSELRGHE-DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 3 ~~d~~-~~~l~~~l~gH~-~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
.|++. .|-+..++.||. ..|-+++|++.++|.+.+.+|+|.-||+.+.+ .........+.|++++.+|.+.
T Consensus 51 iwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-----~~~~~d~~gg~IWsiai~p~~~-- 123 (691)
T KOG2048|consen 51 IWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-----QKYNIDSNGGAIWSIAINPENT-- 123 (691)
T ss_pred EEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-----eeEEecCCCcceeEEEeCCccc--
Confidence 45654 467778888875 58999999999999999999999999998776 5556677789999999999987
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE--EEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEe---------e
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQ--TLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFW---------E 147 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~--~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~---------~ 147 (760)
.++.|+.||.+..++...++... .+...+++|.+++|+ +..++.|+.||.|++||...+.... .
T Consensus 124 ---~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~ 200 (691)
T KOG2048|consen 124 ---ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS 200 (691)
T ss_pred ---eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccc
Confidence 58999999988888887775543 355567999999998 3449999999999999975322211 1
Q ss_pred -cCCcCeEEEEEeCCCcEEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeCC-CeEEEEeCCCeEEEEecCCc---
Q 004329 148 -AHNAPIQTVIRIPSGEIVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMPG-VGIISASHDCTIRLWALTGQ--- 220 (760)
Q Consensus 148 -~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~-~~l~s~s~dg~I~iwd~~~~--- 220 (760)
....-||++.+..++.+++|..-|+|.+|| .++..+.+..|...|.+++..++ +++++++.|+.|..+..++.
T Consensus 201 k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 201 KREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred cCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 234568999999999999999999999999 45677888999999999999986 56999999999999987554
Q ss_pred --eEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe------------------------------------------
Q 004329 221 --VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK------------------------------------------ 256 (760)
Q Consensus 221 --~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd------------------------------------------ 256 (760)
.......|...|.+++..++ .+++||.|..+.+-.
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwr 359 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWR 359 (691)
T ss_pred eeeeccccCCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccccee
Confidence 22334468888999998877 777777776665521
Q ss_pred CCce----------EEEE--ecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-----------
Q 004329 257 DGVC----------VQSI--EHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL----------- 313 (760)
Q Consensus 257 ~~~~----------~~~~--~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~----------- 313 (760)
.|.. +..+ +.+..|.+.+.+|+|++++-+.=..+++|.+.....+.....+......
T Consensus 360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid 439 (691)
T KOG2048|consen 360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTID 439 (691)
T ss_pred ccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEec
Confidence 1111 0001 1234789999999999888888788889988875444333322211111
Q ss_pred -cceEEeccccCceeeecCCCCc---e------------eeccCCCcceEEEEeeCCceEEEEEeccccc
Q 004329 314 -SQYKLCRKKVGGLKLEDLPGLE---A------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQK 367 (760)
Q Consensus 314 -~~~~~~~~~~g~i~~~~l~~~~---~------------l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~ 367 (760)
....++......+...++..+. . ..+.-+++|+...+.+. .+.+++|+.+.++
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLE 508 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-cceEEEEEcccce
Confidence 1222233233334433333221 1 11223457777776664 4788999987764
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.6e-20 Score=177.58 Aligned_cols=227 Identities=17% Similarity=0.252 Sum_probs=186.4
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
+....|.++|.+++|+.+|. +++|+.|+.+++||+.+++ ...+..|.++|.++.|.+.... .+|++|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------~~~v~~Hd~pvkt~~wv~~~~~---~cl~TGSWD 136 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------VSQVAAHDAPVKTCHWVPGMNY---QCLVTGSWD 136 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------eeeeeecccceeEEEEecCCCc---ceeEecccc
Confidence 34557999999999999998 9999999999999999775 4567789999999999988763 379999999
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecC----CcCeEEEEEeCCCc-EEE
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAH----NAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~v~~v~~~~~~~-l~t 166 (760)
.+|+.||.+...++.++. -...|.++..-...++.+..+..|.+|++......++.+ +-.++|++..++.. .+.
T Consensus 137 KTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred cceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence 999999999998888877 456788887778889999999999999997655555544 34578998888766 789
Q ss_pred EECCCcEEEEeCCC----ceEEeecCCC---------ceEEEEEeC-CCeEEEEeCCCeEEEEecCC-ceEEEeecCCCc
Q 004329 167 GSSDTTIKLWKGKK----CAQTFVGHTD---------TVRGLSVMP-GVGIISASHDCTIRLWALTG-QVLMEMVGHTAI 231 (760)
Q Consensus 167 gs~dg~i~iwd~~~----~~~~~~~h~~---------~V~~l~~~~-~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~ 231 (760)
|+-.|.+-+..+.. ...+|+.|.. .|++|+|+| .+.|++++.||++.+||-+. ..+.+...|..+
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp 295 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP 295 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc
Confidence 99999998886433 3346666652 478999999 45599999999999999654 456667889999
Q ss_pred EEEEEEeCCC--eEEEEeCC
Q 004329 232 VYSIDSHASG--LIVSGSED 249 (760)
Q Consensus 232 v~~v~~~p~~--~l~s~s~D 249 (760)
|++.+|+.+| +..+.|.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 9999999999 44555655
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.9e-21 Score=204.90 Aligned_cols=271 Identities=15% Similarity=0.286 Sum_probs=204.3
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC---CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH---TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
...+|...++-. ++.+++ ..++||....... ...+....... ...+..|.|..-.. .+|++++..|.|.+
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~-~~~~~~~~k~kqn~~~S~~DVkW~~~~~----NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDF-SEKCNHRFKTKQNKFYSAADVKWGQLYS----NLIATCSTNGVISV 114 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccC-Ccceeeecccccceeeehhhcccccchh----hhheeecCCCcEEE
Confidence 345566666666 777776 4788888774432 11111111111 23455677874433 47999999999999
Q ss_pred EECCC---CceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC--CcEEE
Q 004329 97 WDLGS---GEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS--GEIVS 166 (760)
Q Consensus 97 wd~~~---~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~--~~l~t 166 (760)
||+.. .+.+..+..|...+.+++|+ ...+++||.||+|++||++ +...++.+....|+.+.|+|. ..|++
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence 99986 45667788999999999997 6779999999999999986 666777888899999999995 34899
Q ss_pred EECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEee--cCCCcEEEEEEeCC
Q 004329 167 GSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHAS 240 (760)
Q Consensus 167 gs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~v~~v~~~p~ 240 (760)
+...|.+++||+++ +...+..|.++|.++.|+|++. +++|+.|+.|+|||+++....... ....+|.++.|-|.
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999999876 4557889999999999999665 999999999999998754332221 34578999999998
Q ss_pred C--eEEEEe--CCCcEEEEeCC---ceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCC
Q 004329 241 G--LIVSGS--EDRFAKIWKDG---VCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 241 ~--~l~s~s--~Dg~I~iwd~~---~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~ 297 (760)
. .|++++ .|-.|+|||-. -+..++. |...++.++|-.... +.+++.||.|..-.++.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 7 777775 58889999932 3344444 888999999966323 78888888876544443
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.8e-20 Score=186.55 Aligned_cols=259 Identities=21% Similarity=0.322 Sum_probs=196.1
Q ss_pred EECCC-eEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCCCCCCcEEEEE-eCCCeEEEEECCCCceEEEEeCCC
Q 004329 36 SSRDR-TVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNEEFPEGGLVSG-GMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 36 gs~Dg-~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~l~sg-s~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
++.|. ++.+||+.+|. ....+++. ...-.++..... . +++++ .....|.+|.+..........--.
T Consensus 13 sS~d~~~~~~~dl~TGt-----~~~~ykg~~~a~~~sl~~l~~-~-----yllsaq~~rp~l~vw~i~k~~~~~q~~v~P 81 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGT-----SLLQYKGSYLAQAASLTALNN-E-----YLLSAQLKRPLLHVWEILKKDQVVQYIVLP 81 (476)
T ss_pred cCCCCcceeEEecCCCc-----eeEEecCcccccchhhhhhch-h-----heeeecccCccccccccCchhhhhhhcccc
Confidence 34444 59999999887 33334333 111111111111 1 34444 445679999987654444333456
Q ss_pred ccEEEEEec-CCe-EEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeC---------
Q 004329 113 LQVTGVTLD-NED-IVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKG--------- 178 (760)
Q Consensus 113 ~~V~~l~~~-~~~-l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~--------- 178 (760)
++|.++.-+ .++ ++.|+..|.+++|.+ +..+..+..|..+|+|+.|+.||. +++|+.||.|.+|++
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 789999876 444 556669999999964 688888999999999999999988 889999999999962
Q ss_pred --CCceEEeecCCCceEEEEEeCC---CeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcE
Q 004329 179 --KKCAQTFVGHTDTVRGLSVMPG---VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFA 252 (760)
Q Consensus 179 --~~~~~~~~~h~~~V~~l~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I 252 (760)
-.+.+.|..|+-+|+++...++ .+++++|.|.++++||+....+..-......+.+++.+|.+ .++.|+++|.|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceE
Confidence 1366788999999999999885 45999999999999999766665555678899999999999 99999999999
Q ss_pred EEEe----CC--------------ceEEEE-ecCC--cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 253 KIWK----DG--------------VCVQSI-EHPG--CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 253 ~iwd----~~--------------~~~~~~-~~~~--~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.+.+ .+ +.+..+ .|.+ .|+|++.+-||. +++|+.||.|+|||+.+.++++++.
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 9876 11 111222 3666 999999999999 8999999999999999999888765
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=3.6e-19 Score=169.78 Aligned_cols=276 Identities=20% Similarity=0.313 Sum_probs=202.2
Q ss_pred ccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCC--cc-c----ee---eeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 16 RGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDK--RK-Y----HS---SKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 16 ~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~--~~-~----~~---~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+.|.+.|+++.+.+ .|+ +++|+.||.|.+||++.... .. . .+ ...-.+|+..|.++.|.|-+. |
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt----G 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT----G 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC----c
Confidence 46999999999985 455 99999999999999985441 10 1 11 112246888999999999876 5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-----CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-----NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTV 156 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v 156 (760)
.+.+++.|.+++|||..+.+....++ -.+.|.+-+++ ...+++|..|-.|++.|+ +...+++.+|.+.|.++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 79999999999999999888776665 34445554443 445888889999999997 57888999999999999
Q ss_pred EEeCCCc--EEEEECCCcEEEEeCCCc---eEEe--------------ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEe
Q 004329 157 IRIPSGE--IVSGSSDTTIKLWKGKKC---AQTF--------------VGHTDTVRGLSVMPGVG-IISASHDCTIRLWA 216 (760)
Q Consensus 157 ~~~~~~~--l~tgs~dg~i~iwd~~~~---~~~~--------------~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd 216 (760)
.|+|... +++|+.||.|++||+++. ...+ ..|.+.|.+++|..++. +++++.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9999877 779999999999996642 2222 34778899999999776 99999999999999
Q ss_pred cC-Cce-EEEee--cCCC---cEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEE
Q 004329 217 LT-GQV-LMEMV--GHTA---IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTAC 285 (760)
Q Consensus 217 ~~-~~~-~~~~~--~h~~---~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~ 285 (760)
.. |+. +..+- .|.. .-.-+.....+.++---.++.+.++. .+..++.+. |-..|.|.++-|+-+ ..+|.
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 63 321 11110 1111 11112211112444444557777777 666666665 655889999988877 89999
Q ss_pred cCCcEEEEeCC
Q 004329 286 SDGVTRIWTVH 296 (760)
Q Consensus 286 ~dg~I~vw~~~ 296 (760)
.|+.|..|-..
T Consensus 355 ~d~ni~~w~p~ 365 (397)
T KOG4283|consen 355 MNGNIYMWSPA 365 (397)
T ss_pred cCCcccccccc
Confidence 99999999873
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-19 Score=187.74 Aligned_cols=274 Identities=20% Similarity=0.268 Sum_probs=207.2
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+...+.||++.|+|+...|.|. |++|+.||+||||.+.++. ++.... ..+.|.|++|+|..... +|+++
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-----cvr~~~-~d~~I~~vaw~P~~~~~---vLAvA- 461 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-----CVRTVQ-FDSEIRSVAWNPLSDLC---VLAVA- 461 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-----EEEEEe-ecceeEEEEecCCCCce---eEEEE-
Confidence 4456789999999999999999 9999999999999999886 454443 35689999999988742 33333
Q ss_pred CCCeEEEEECCCC-------------------------------------ceEEEEeCCCccEEEEEec--CCeEEEEEC
Q 004329 90 MDTMVLVWDLGSG-------------------------------------EKVQTLQGHKLQVTGVTLD--NEDIVSSSV 130 (760)
Q Consensus 90 ~dg~I~vwd~~~~-------------------------------------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~ 130 (760)
.+..+.+.+..-| .-+...-.|...|..+.|+ +++|++...
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 3333444433111 0122333577889999998 788888776
Q ss_pred C---CeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCC-e
Q 004329 131 D---STLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGV-G 202 (760)
Q Consensus 131 d---g~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~-~ 202 (760)
+ ..|.|+++. ....-++...+.|.++.|+|....+..+....|++||+.+ .++.+......|.+++++|+| .
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 5 457788775 3334455567789999999987755555667899999654 344555667789999999955 4
Q ss_pred EEEEeCCCeEEEEec--CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--------CCc---eEEEEe-cC
Q 004329 203 IISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--------DGV---CVQSIE-HP 267 (760)
Q Consensus 203 l~s~s~dg~I~iwd~--~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--------~~~---~~~~~~-~~ 267 (760)
++.++.|+.+..+|+ ..++.+++.-|...++++++++.- ++++|+.||++.|+. ... ++..+. |.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999999996 456889999999999999999988 999999999999986 111 222332 43
Q ss_pred C----cEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 268 G----CVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 268 ~----~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
. .|..+.|+|... +++++.||+||+|.
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEeeC
Confidence 3 589999999988 99999999999994
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-18 Score=167.98 Aligned_cols=231 Identities=18% Similarity=0.314 Sum_probs=179.6
Q ss_pred eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----ceEEEEeCCCccEEEEEec----CCeEEEEECCC
Q 004329 61 LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----EKVQTLQGHKLQVTGVTLD----NEDIVSSSVDS 132 (760)
Q Consensus 61 ~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg 132 (760)
..+|..-|.++.|.+.|+ .+++|+.|++++|||.... .+....+.|.+.|..+.|- +..+++++.|+
T Consensus 9 ~s~h~DlihdVs~D~~GR-----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGR-----RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred ccCCcceeeeeeecccCc-----eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 457899999999999998 6999999999999996443 4566678999999999994 55699999999
Q ss_pred eEEEEECC-----------ceeEEeecCCcCeEEEEEeCCCc---EEEEECCCcEEEEeCCC--------ceEEee----
Q 004329 133 TLKRWRKG-----------KLVEFWEAHNAPIQTVIRIPSGE---IVSGSSDTTIKLWKGKK--------CAQTFV---- 186 (760)
Q Consensus 133 ~v~vwd~~-----------~~~~~~~~~~~~v~~v~~~~~~~---l~tgs~dg~i~iwd~~~--------~~~~~~---- 186 (760)
++.||.-. ....++......|+.+.|.|... +++++.||.+|+|+.-. .++.+.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999531 23345566788999999999743 88999999999997332 122222
Q ss_pred ---cCCCceEEEEEeCCCe----EEEEeCC-----CeEEEEecC--C---ceEEEeecCCCcEEEEEEeCCC-----eEE
Q 004329 187 ---GHTDTVRGLSVMPGVG----IISASHD-----CTIRLWALT--G---QVLMEMVGHTAIVYSIDSHASG-----LIV 244 (760)
Q Consensus 187 ---~h~~~V~~l~~~~~~~----l~s~s~d-----g~I~iwd~~--~---~~~~~~~~h~~~v~~v~~~p~~-----~l~ 244 (760)
.+..+..|+.|+|... ++.|+.+ +.++||... + ..+.++.+|+.+|+.++|.|+- .++
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 4667888999998432 6666655 478888742 3 2345567999999999999973 799
Q ss_pred EEeCCCcEEEEeCCc-------------------eEEEE----ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 245 SGSEDRFAKIWKDGV-------------------CVQSI----EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 245 s~s~Dg~I~iwd~~~-------------------~~~~~----~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
+++.|| |+||+-+. .+..+ .|.+.||.+.|+-.|. |.+.|.||.||+|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999999 99998110 12222 2888999999999999 78888899999998653
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.7e-20 Score=198.62 Aligned_cols=228 Identities=20% Similarity=0.306 Sum_probs=185.8
Q ss_pred EEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 22 VRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 22 V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
+..|.|..-.. |+|++..|.|.+||+.... .-.....+..|+..++++.|++.... +|++|+.||+|++||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk~l~~f~EH~Rs~~~ldfh~tep~----iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNKLLTVFNEHERSANKLDFHSTEPN----ILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--cchhhhHhhhhccceeeeeeccCCcc----EEEecCCCceEEEEee
Confidence 44567773222 9999999999999997421 12245577889999999999998875 6999999999999999
Q ss_pred CCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCc
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT 172 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~ 172 (760)
+..+-..++.+....|..+.|+ ++.|+++...|.+++||++ .+...+..|.++|.|+.|+|++. |+||+.|++
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence 9998888899999999999997 5569999999999999997 45566789999999999999766 889999999
Q ss_pred EEEEeCCCc--eEEe-ecCCCceEEEEEeCCCe--EEEEe--CCCeEEEEecCCc--eEEEeecCCCcEEEEEEeCCC--
Q 004329 173 IKLWKGKKC--AQTF-VGHTDTVRGLSVMPGVG--IISAS--HDCTIRLWALTGQ--VLMEMVGHTAIVYSIDSHASG-- 241 (760)
Q Consensus 173 i~iwd~~~~--~~~~-~~h~~~V~~l~~~~~~~--l~s~s--~dg~I~iwd~~~~--~~~~~~~h~~~v~~v~~~p~~-- 241 (760)
|++||.... .... .....+|..+.|-|... |++++ .|-.|+|||++.. +..++..|...++.++|....
T Consensus 244 vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 999995532 1112 22457899999999654 77776 4888999998653 567788999999999998744
Q ss_pred eEEEEeCCCcEEEE
Q 004329 242 LIVSGSEDRFAKIW 255 (760)
Q Consensus 242 ~l~s~s~Dg~I~iw 255 (760)
.+.+++.||+|..-
T Consensus 324 ~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQH 337 (839)
T ss_pred eeEeecCccHHHHh
Confidence 89999999987643
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=187.04 Aligned_cols=276 Identities=20% Similarity=0.273 Sum_probs=196.8
Q ss_pred CCCCEEE--EEEc--CCCe--EEEEECCCeEEEEeCCCCCCc-cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 18 HEDDVRG--ICVC--DNVG--IATSSRDRTVRFWSLDPSDKR-KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 18 H~~~V~~--v~~~--~~~~--l~tgs~Dg~i~iWd~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
|.-++.- ..|+ ++.. |+.+..||.|.++|....... ..........|.+.|..+.|.| +.. .|++++.
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~----~lVsasG 120 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES----LLVSASG 120 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce----eEEEccC
Confidence 3334444 4555 2333 999999999999998744322 1122345678999999999999 443 6999999
Q ss_pred CCeEEEEECCCCceEEE--EeCCCccEEEEEec---CCeEEEEECCCeEEEEECCce-----------------------
Q 004329 91 DTMVLVWDLGSGEKVQT--LQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKL----------------------- 142 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~----------------------- 142 (760)
|.++++||+++++++.. +.+|.+.|.+++|. ...|++|+.||.+.+||.+..
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999988777 88999999999996 445999999999999985310
Q ss_pred ------eEEeecCCcC----eEEEEEeCCCcEEEEEC-CCcEEEEeCCCceEEee----------cC---CCceEEEEEe
Q 004329 143 ------VEFWEAHNAP----IQTVIRIPSGEIVSGSS-DTTIKLWKGKKCAQTFV----------GH---TDTVRGLSVM 198 (760)
Q Consensus 143 ------~~~~~~~~~~----v~~v~~~~~~~l~tgs~-dg~i~iwd~~~~~~~~~----------~h---~~~V~~l~~~ 198 (760)
+.....+... |+.+.|-.+..+++++. |+.|++||+++....+. .| .-.+.++...
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1112223333 44556665666888777 99999999886544332 22 2235566655
Q ss_pred C-CCeEEEEeCCCeEEEEecCC---ceEEEeecCCCc--EEEEEEeCCC-eEEEEeCCCcEEEEeCCc----eEEEEecC
Q 004329 199 P-GVGIISASHDCTIRLWALTG---QVLMEMVGHTAI--VYSIDSHASG-LIVSGSEDRFAKIWKDGV----CVQSIEHP 267 (760)
Q Consensus 199 ~-~~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~~~--v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~----~~~~~~~~ 267 (760)
. +.++++.+.|+.|+.|++.+ .++..+.++... -..-..+|++ ++++|+.|...++|.... ......|.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 5 45566666699999999754 344444444322 2223467888 999999999999998333 23334588
Q ss_pred CcEEEEEEccCC--cEEEEEcCCcEEEEeCCCC
Q 004329 268 GCVWDAKFLENG--DIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 268 ~~v~~v~~~~~g--~lvt~~~dg~I~vw~~~~~ 298 (760)
-.|++++|.|.. .+++++.|-.+++|++..+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 899999998754 4999999999999999654
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.2e-21 Score=201.33 Aligned_cols=230 Identities=27% Similarity=0.439 Sum_probs=199.0
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
+.+..|+..|.|+..-..++ +++|+.|..+.+|...... ....+.+|..+|.|+.|++... +|++|+.+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-----~i~S~~~hespIeSl~f~~~E~-----Llaagsas 91 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-----AITSLTGHESPIESLTFDTSER-----LLAAGSAS 91 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-----hhheeeccCCcceeeecCcchh-----hhcccccC
Confidence 45567999999998866666 9999999999999886332 4556899999999999998876 68999999
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEE
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~t 166 (760)
|+|++||++.++.++++.+|...++++.|+ +.++++|+.|+.+++||.+ .+...+.+|...|.++.+.|+|+ ++.
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~ 171 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVAS 171 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeec
Confidence 999999999999999999999999999998 6678999999999999986 78889999999999999999998 678
Q ss_pred EECCCcEEEEeC--CCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-
Q 004329 167 GSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG- 241 (760)
Q Consensus 167 gs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~- 241 (760)
|+.|.++++||. ++....|..|...+.++.++|... +++|+.|+++++||+. -+.+.........|.+..|+|++
T Consensus 172 g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence 888999999995 567789999999999999999666 8899999999999987 56666666678899999999999
Q ss_pred eEEEEeCCCcEE
Q 004329 242 LIVSGSEDRFAK 253 (760)
Q Consensus 242 ~l~s~s~Dg~I~ 253 (760)
.+.+|.. -.+.
T Consensus 252 ~~~~G~q-~sl~ 262 (825)
T KOG0267|consen 252 IVLSGEQ-ISLS 262 (825)
T ss_pred eeecCch-hhhh
Confidence 5555443 3344
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=9.3e-18 Score=176.34 Aligned_cols=261 Identities=13% Similarity=0.096 Sum_probs=184.2
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
++|++.|+.+++||+.+++ ....+..+. .+.+++|+|++.. ++++++.++.|++||..+++....+..+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~-----~~~~~~~~~-~~~~l~~~~dg~~----l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLE-----VTRTFPVGQ-RPRGITLSKDGKL----LYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEecCCCEEEEEECCCCc-----eEEEEECCC-CCCceEECCCCCE----EEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 7899999999999998665 344555544 3678999998872 24677789999999999998877776554
Q ss_pred ccEEEEEec--CCeEE-EEECCCeEEEEECCc--eeEEeecCCcCeEEEEEeCCCc-EEEEECCC-cEEEEeCCCceE--
Q 004329 113 LQVTGVTLD--NEDIV-SSSVDSTLKRWRKGK--LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDT-TIKLWKGKKCAQ-- 183 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~-sgs~dg~v~vwd~~~--~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg-~i~iwd~~~~~~-- 183 (760)
. +..++++ ++.++ +++.++.+++||... .+..+. +...+.++.++|++. +++++.++ .+..||......
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 3 4566776 44454 455689999999863 333333 233467899999988 55666554 467778654322
Q ss_pred EeecCCCceEEEEEeCCCe-E-EEEeCCCeEEEEecC-CceEEEeecCC-------CcEEEEEEeCCC-e-EEEEeCCCc
Q 004329 184 TFVGHTDTVRGLSVMPGVG-I-ISASHDCTIRLWALT-GQVLMEMVGHT-------AIVYSIDSHASG-L-IVSGSEDRF 251 (760)
Q Consensus 184 ~~~~h~~~V~~l~~~~~~~-l-~s~s~dg~I~iwd~~-~~~~~~~~~h~-------~~v~~v~~~p~~-~-l~s~s~Dg~ 251 (760)
.. .....+.+++|+|++. + +++..++.|++||+. ++.+..+..+. .....++++|++ . +++.+.++.
T Consensus 152 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 152 NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 22 2234567899999776 5 444569999999985 44444443221 123568899999 4 455566778
Q ss_pred EEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEE-EcCCcEEEEeCCCCeeechhhh
Q 004329 252 AKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTA-CSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 252 I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~-~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
+.+|| .++....+.+...+++++|+|+|+ ++++ +.+|.|++||+.+++.+..+..
T Consensus 231 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99999 556666666667899999999999 5554 4589999999999988776653
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2e-19 Score=182.48 Aligned_cols=273 Identities=17% Similarity=0.191 Sum_probs=205.9
Q ss_pred ccccCCCceEeEEeccCC--CCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHE--DDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~--~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
..||....+....+..|+ -.+.+++|..... +++.+.|..+++|.-. ++.+.........+. .-.|++.....
T Consensus 15 kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd--~~~Cv~~~s~S 91 (673)
T KOG4378|consen 15 KLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGD--NAFCVACASQS 91 (673)
T ss_pred EEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccc--hHHHHhhhhcc
Confidence 356776666655555543 3589999998775 5566778999999876 332222222222222 23333333333
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecC-CcC
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAH-NAP 152 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~-~~~ 152 (760)
. ++++|+..++|+|||++...+.+.+++|...|+++.++ +.++++++..|.|.+..+. .....+... ...
T Consensus 92 ~-----y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 92 L-----YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred e-----eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 3 69999999999999999777888899999999999997 7789999999999999764 223334333 445
Q ss_pred eEEEEEeCCCc--EEEEECCCcEEEEeCCCc--eE-EeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceEEEe
Q 004329 153 IQTVIRIPSGE--IVSGSSDTTIKLWKGKKC--AQ-TFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEM 225 (760)
Q Consensus 153 v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~--~~-~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~~~ 225 (760)
|+-+.+++..+ +.+++.+|.|.+||.... .. -...|..+...|||+|.+. |++.+.|..|.+||...+.....
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 66889999877 668999999999996543 32 3456999999999999554 89999999999999876665555
Q ss_pred ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---CCceEEEEe-cCCcEEEEEEccCCcEE
Q 004329 226 VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAKFLENGDIV 282 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~-~~~~v~~v~~~~~g~lv 282 (760)
.....+...++|.++| +|++|...|.|..|| ...++..+. |...|++++|-|.-.++
T Consensus 247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 5667889999999999 999999999999999 556666665 88899999997764343
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=188.30 Aligned_cols=253 Identities=18% Similarity=0.304 Sum_probs=201.1
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
.+|+..-+.|+|.|+|. |+|++.||.|++|+..+... ....+..+...|.+++.... ++++|+.+++|
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e----~P~ti~~~g~~v~~ia~~s~-------~f~~~s~~~tv 78 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE----EPETIDISGELVSSIACYSN-------HFLTGSEQNTV 78 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc----CCchhhccCceeEEEeeccc-------ceEEeeccceE
Confidence 47999999999999999 99999999999999765421 12223337788888875433 49999999999
Q ss_pred EEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEEC
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSS 169 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~ 169 (760)
.+|.+.+++.-..+....-++.+++++ +..++.||.|-.|++-+. ......+++|.++|.++.++|++. +++.+.
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 999999988776677777888888887 557999999999999976 467788999999999999999998 668889
Q ss_pred CCcEEEEeCCC--ceEEeec--------CCCceEEEEEeCC-CeEEEEeCCCeEEEEecCC-ceEEEee--cCCCcEEEE
Q 004329 170 DTTIKLWKGKK--CAQTFVG--------HTDTVRGLSVMPG-VGIISASHDCTIRLWALTG-QVLMEMV--GHTAIVYSI 235 (760)
Q Consensus 170 dg~i~iwd~~~--~~~~~~~--------h~~~V~~l~~~~~-~~l~s~s~dg~I~iwd~~~-~~~~~~~--~h~~~v~~v 235 (760)
||.|++||+.. +.+++.+ ....+..++|+|+ +.++..+.|+.|++|+..+ .....+. .+...+.++
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 99999999653 2222221 1455778999996 6699999999999999754 3344443 345559999
Q ss_pred EEeCCC-eEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEEccCCc
Q 004329 236 DSHASG-LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGD 280 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~~g~ 280 (760)
.|+|+| +||+++.||.|.|||..+ ...-.....|.+++|.|+..
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t-~~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT-HERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc-chhccccceeEEEecCCCCC
Confidence 999999 999999999999999544 22222344899999999987
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=8.1e-21 Score=200.95 Aligned_cols=243 Identities=28% Similarity=0.491 Sum_probs=203.3
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
+.....+-.+++|+.. .+..|...|.|+..-.... .+++|+.|..+-+|.+.....+..+.+|.
T Consensus 7 ~m~~~~~t~Lr~~~~~-----------~~~~hsaav~~lk~~~s~r-----~~~~Gg~~~k~~L~~i~kp~~i~S~~~he 70 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTR-----------EFVAHSAAVGCLKIRKSSR-----SLVTGGEDEKVNLWAIGKPNAITSLTGHE 70 (825)
T ss_pred cceeeeeeccccccch-----------hhhhhhhhhceeeeeccce-----eeccCCCceeeccccccCCchhheeeccC
Confidence 4555666677788765 2335788888888744444 58999999999999998777788899999
Q ss_pred ccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEe
Q 004329 113 LQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTF 185 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~ 185 (760)
.+|.++.|+ ...++.|+.+|+|++||+. +.++++.+|...+.++.|+|-+. ++.|+.|+.+++||.+ .|.+.+
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 999999998 5559999999999999986 67788999999999999999988 5689999999999976 588899
Q ss_pred ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC--Cce
Q 004329 186 VGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD--GVC 260 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~--~~~ 260 (760)
.+|...|..+.|+|+++ +++++.|.++++||. .|+...+|.+|...+.++.++|.. ++++||.|+++++||. ...
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 99999999999999886 889999999999997 578888999999999999999999 9999999999999993 344
Q ss_pred EEEEe-cCCcEEEEEEccCCcEEEEEcCCcEE
Q 004329 261 VQSIE-HPGCVWDAKFLENGDIVTACSDGVTR 291 (760)
Q Consensus 261 ~~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~ 291 (760)
+...+ ....|.+..|+|+|..+.++..-.++
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 44433 45699999999999955444433333
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=2.1e-17 Score=173.64 Aligned_cols=264 Identities=10% Similarity=0.085 Sum_probs=186.5
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-E-EEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-I-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l-~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|..||..+.+..+.+.+|.. +.+++|+|++. + ++++.|+.|++||..+++ ....+..+. .+..++|+|++.
T Consensus 13 v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~-~~~~~~~~~~g~ 85 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-----VIGTLPSGP-DPELFALHPNGK 85 (300)
T ss_pred EEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-----EEEeccCCC-CccEEEECCCCC
Confidence 45789988899899887654 67899999987 4 677889999999998664 223333333 356789999887
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC-eEEEEECCc--eeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS-TLKRWRKGK--LVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg-~v~vwd~~~--~~~~~~~~~~~v 153 (760)
. ++++++.++.|++||+.+++.+..+.. ...+.+++++ +..+++++.++ .+.+||... ...... .....
T Consensus 86 ~----l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~ 159 (300)
T TIGR03866 86 I----LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRP 159 (300)
T ss_pred E----EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCc
Confidence 3 234556789999999998887777763 2345778886 55677777765 466778753 222222 23345
Q ss_pred EEEEEeCCCc-EE-EEECCCcEEEEeCCCc--eEEeecCC-----C--ceEEEEEeCCCe--EEEEeCCCeEEEEecCCc
Q 004329 154 QTVIRIPSGE-IV-SGSSDTTIKLWKGKKC--AQTFVGHT-----D--TVRGLSVMPGVG--IISASHDCTIRLWALTGQ 220 (760)
Q Consensus 154 ~~v~~~~~~~-l~-tgs~dg~i~iwd~~~~--~~~~~~h~-----~--~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~ 220 (760)
.++.|++++. ++ ++..++.|++||.... ...+..+. . ....++++|++. +++.+.++.+.+||....
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 6789999988 43 4446899999996643 33333221 1 234688999776 344556778999998644
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEE-eCCCcEEEEe--CCceEEEEecCCcEEEEEEcc
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE 277 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~-s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~ 277 (760)
.+.....+...+.+++|+|++ +|+++ +.++.|++|| .++++..+......+.++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred cEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 443333455679999999999 77665 5699999999 778888888777779998875
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3.4e-18 Score=180.61 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=210.7
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe----EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG----IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~----l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
|..||..+-....++.||..+|+|+.|.|... +++|+.||.|++|.++.. .+.....+.+|...+.|+. ..
T Consensus 36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~---~~~~i~~~~g~~~~~~cv~--a~ 110 (764)
T KOG1063|consen 36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE---YLIKIYTIQGHCKECVCVV--AR 110 (764)
T ss_pred EEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh---heEEEEeecCcceeEEEEE--ee
Confidence 34567766677888999999999999998776 999999999999999822 3566777777776666654 33
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCc--eEEEEeCCCccEE--EEEe--cCCe--EEEEECCCeEEEEECC----ceeE
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGE--KVQTLQGHKLQVT--GVTL--DNED--IVSSSVDSTLKRWRKG----KLVE 144 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~--~l~~--~~~~--l~sgs~dg~v~vwd~~----~~~~ 144 (760)
.. ...+...|+.+.+||.+..+ +...+.-....+. |++. +++. ++.|+.+..|.++... ....
T Consensus 111 ~~-----~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 111 SS-----VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred ee-----EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 22 12233789999999996555 2223332222222 2222 2333 6677777888888544 6677
Q ss_pred EeecCCcCeEEEEEeCCCc----EEEEECCCcEEEEeCC--C---------------------ceE----------Eeec
Q 004329 145 FWEAHNAPIQTVIRIPSGE----IVSGSSDTTIKLWKGK--K---------------------CAQ----------TFVG 187 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~----l~tgs~dg~i~iwd~~--~---------------------~~~----------~~~~ 187 (760)
.+.+|.+.|.+++|...+. ++++|+|..||+|.+. . ... .+.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999987533 7799999999999611 1 010 1238
Q ss_pred CCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc--------eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC
Q 004329 188 HTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ--------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD 257 (760)
Q Consensus 188 h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~--------~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~ 257 (760)
|.+.|.++.|+|.+. ++++|.|.++.+|....+ .+..+.+.....++..|+|++ .+++-+.-|-.++|.+
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 999999999999874 999999999999985322 223333455678999999999 8999999999999982
Q ss_pred ---CceEEEE---ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 258 ---GVCVQSI---EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 258 ---~~~~~~~---~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
....+.. .|.+.|.+++|.|.|. +++.+.|.+-|+|-.-
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 2222222 3888999999999999 8999999999999866
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=170.59 Aligned_cols=239 Identities=21% Similarity=0.330 Sum_probs=185.5
Q ss_pred EEeccCCCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCC-----------CCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 13 SELRGHEDDVRGICVCDNVG---IATSSRDRTVRFWSLDPS-----------DKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~-----------~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
...-+|.+.|+.+...+-+. .++-+..|.|.||++... ......++.++.+|...=+.++|+|...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34457888888887776554 666688999999998521 1134556778889999999999999543
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceE---EEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC----ceeEEeec
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKV---QTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG----KLVEFWEA 148 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~---~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~----~~~~~~~~ 148 (760)
|.+++|..-+.|++|...++.-. ..+.+|+..|-.++|+ .+.|++||.||+|+|||++ +.-...+.
T Consensus 225 ----g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 225 ----GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ----cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 45899999999999999887543 3356899999999996 5669999999999999986 23344589
Q ss_pred CCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-----CceEEeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEecCCc
Q 004329 149 HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-----KCAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALTGQ 220 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-----~~~~~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~~~~ 220 (760)
|.+.|..+.|+..-. |++|+.||++++||++ +++..|+-|..+|+++.|+| +..+++++.|.+|.+||+.-+
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999999998765 8899999999999965 46678999999999999999 445999999999999997211
Q ss_pred -----------------eEEEeecC--CCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 221 -----------------VLMEMVGH--TAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 221 -----------------~~~~~~~h--~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
+.+-+.-| ...+..+.|++.- ++++.+.|| +.||.
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11223334 3467778888764 888888888 55553
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.9e-18 Score=163.25 Aligned_cols=259 Identities=20% Similarity=0.241 Sum_probs=186.6
Q ss_pred EEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce--EEEEe--CCCccEEE
Q 004329 42 VRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK--VQTLQ--GHKLQVTG 117 (760)
Q Consensus 42 i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~--~h~~~V~~ 117 (760)
.+-|+..............+++|.+.|++++|+.++. .|++++.|+.|++|+++.... .+.++ -.-+..+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK-----~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~ 137 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGK-----KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTR 137 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCc-----eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceE
Confidence 4556654333222234557889999999999999998 599999999999999976421 11111 11124566
Q ss_pred EEecCC---eEEEEECCCeEEEEECCc--------------eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 004329 118 VTLDNE---DIVSSSVDSTLKRWRKGK--------------LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK 179 (760)
Q Consensus 118 l~~~~~---~l~sgs~dg~v~vwd~~~--------------~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~ 179 (760)
+.|.++ .++++-...++++|...+ ....-+.|...+..+-...++. +++++.|..|.+|+.+
T Consensus 138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred EEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 777633 366677777899995321 1112234556666666666666 7799999999999965
Q ss_pred -CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec----CC-----ceEEEeecCCCcEEEEEEeCCC-eEEEEe
Q 004329 180 -KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL----TG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 180 -~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~----~~-----~~~~~~~~h~~~v~~v~~~p~~-~l~s~s 247 (760)
+.+..+......-...+++|+++ +++++.-..|++|.. +| ..+..+.||.+.|..++|+++. .+++.+
T Consensus 218 Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 218 GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS 297 (420)
T ss_pred CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe
Confidence 45556666666677788999888 778888999999984 22 3456788999999999999999 999999
Q ss_pred CCCcEEEEeCC---------ceEEEEe---c--CCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 248 EDRFAKIWKDG---------VCVQSIE---H--PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 248 ~Dg~I~iwd~~---------~~~~~~~---~--~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.||++||||+. ..+.... | .+....+..+|+|++++.+....+++|..++++....++
T Consensus 298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH
Confidence 99999999922 2222221 2 224458999999999888999999999999988776654
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3e-18 Score=172.57 Aligned_cols=236 Identities=20% Similarity=0.302 Sum_probs=181.3
Q ss_pred CCeEEEEEeCCCCC--CCCcEEEEEeCCCeEEEEECCCC---ceEEE------------------EeCCCccEEEEEec-
Q 004329 66 SFVGPLAWISPNEE--FPEGGLVSGGMDTMVLVWDLGSG---EKVQT------------------LQGHKLQVTGVTLD- 121 (760)
Q Consensus 66 ~~V~~l~~~~~~~~--~~~~~l~sgs~dg~I~vwd~~~~---~~~~~------------------l~~h~~~V~~l~~~- 121 (760)
.+-.|+.|...+.. -..++++.|+.|..|.|||+.-. .+..+ -.+|+..|.+++|+
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 44567787655221 12348999999999999998421 11111 23688889999997
Q ss_pred --CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceE--EeecCCCceE
Q 004329 122 --NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQ--TFVGHTDTVR 193 (760)
Q Consensus 122 --~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~--~~~~h~~~V~ 193 (760)
.+.|++||.|.+|++||+ +++..++..|...|.++.|+|... +++||.|+++.+.|.+.... ..-...+.|.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 444999999999999987 588889999999999999999754 88999999999999774221 1112457799
Q ss_pred EEEEeCCCe--EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEe
Q 004329 194 GLSVMPGVG--IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 194 ~l~~~~~~~--l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~ 265 (760)
.++|.|... ++++..||+++-+|++ ++++.++..|...|.++++++.- ++++++.|+.|++|+ .........
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 999999443 8899999999999974 68999999999999999999875 999999999999999 212211112
Q ss_pred c---CCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCeee
Q 004329 266 H---PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 266 ~---~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~~~ 301 (760)
| -+...|.++.|+-. ++.|+..+.++|||+.+...+
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2 12466777777655 889999999999999877643
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=6.7e-18 Score=170.55 Aligned_cols=245 Identities=16% Similarity=0.218 Sum_probs=192.3
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----ceEEEEeCCCccEEEEEec---CCeEEEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----EKVQTLQGHKLQVTGVTLD---NEDIVSSS 129 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~l~sgs 129 (760)
......-+.+.|++++|+|.... .++++|...|.|-+||+.+. .-+..+..|..+|.++.|+ ...+++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~---~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENR---KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ecceeEecccceEEEEecccCcc---eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 44556678999999999998862 37999999999999999533 3356678899999999997 44599999
Q ss_pred CCCeEEEEECCcee----EEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce---EEeecCCCceEEEEEeCCC
Q 004329 130 VDSTLKRWRKGKLV----EFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA---QTFVGHTDTVRGLSVMPGV 201 (760)
Q Consensus 130 ~dg~v~vwd~~~~~----~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~---~~~~~h~~~V~~l~~~~~~ 201 (760)
.||+|+.-|....+ .........+..+.++.+.. ++.+..=|.+.+||.+... ..+.-|...|++++++|-.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 99999999986333 23333444566677776655 7788888899999966543 3456688999999999944
Q ss_pred e--EEEEeCCCeEEEEecC---Cc--eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC------CceEEEEecC
Q 004329 202 G--IISASHDCTIRLWALT---GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD------GVCVQSIEHP 267 (760)
Q Consensus 202 ~--l~s~s~dg~I~iwd~~---~~--~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~------~~~~~~~~~~ 267 (760)
. +++++.|++.+|||++ ++ ++.....|...|.+..|+|.+ .|++.+.|..|||||. ..+..++.|+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 3 9999999999999963 32 345556899999999999998 9999999999999993 3456667765
Q ss_pred C------cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 268 G------CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 268 ~------~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
. ......|.|+.. +++|-.-..|-|||-..++++..+
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 4 346678999887 677777888999999998866543
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.3e-18 Score=184.14 Aligned_cols=231 Identities=21% Similarity=0.305 Sum_probs=187.8
Q ss_pred eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC
Q 004329 62 LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG 140 (760)
Q Consensus 62 ~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~ 140 (760)
..|...-+.++|.|++. +|++++.||.|++|+.... +.-.++..+...|.+++...++|++|+.+++|.+|...
T Consensus 10 yaht~G~t~i~~d~~ge-----fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-----FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCC-----EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence 46888899999999998 6999999999999998665 33344444888999999998899999999999999764
Q ss_pred --ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEE
Q 004329 141 --KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRL 214 (760)
Q Consensus 141 --~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~i 214 (760)
..-..+....-++++++++.+|. ++.||.|-.|++.+.. ...+.+.+|..+|.++.++|.+. +++.+.||.|++
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 33334555677899999999988 7789999999999844 46678999999999999999766 889999999999
Q ss_pred EecCCce-EEEeec--------CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe---cCCcEEEEEEccCC
Q 004329 215 WALTGQV-LMEMVG--------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENG 279 (760)
Q Consensus 215 wd~~~~~-~~~~~~--------h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~---~~~~v~~v~~~~~g 279 (760)
||++... ..++.+ ....+..++|+|++ .++..+.|+.|++|+ .......+. +...+.+++|+|+|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 9986433 333321 13456778999997 899999999999999 444444443 33459999999999
Q ss_pred c-EEEEEcCCcEEEEeCCC
Q 004329 280 D-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 280 ~-lvt~~~dg~I~vw~~~~ 297 (760)
. |++++.||.|.|||.++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9 78888899999999996
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=175.23 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=174.5
Q ss_pred EEEEECCCeEEEEeCCCCCC--ccc--------------eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDK--RKY--------------HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~--~~~--------------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
+|.|+.|..|.|||++--.. +.. .......+|+..|.+++|...... .|++||.|.+|++
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n----VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN----VLASGSADKTVKL 270 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce----eEEecCCCceEEE
Confidence 99999999999999862211 000 011123468899999999877664 6999999999999
Q ss_pred EECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCc---eeEEeecCCcCeEEEEEeCCCc--EEEEE
Q 004329 97 WDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPIQTVIRIPSGE--IVSGS 168 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v~~v~~~~~~~--l~tgs 168 (760)
||+.++++..++..|...|.++.|+ +..+++|+.|++|.+.|.+. .-..+ ...+.|-.++|.|... ++++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEec
Confidence 9999999999999999999999997 55699999999999999873 11222 2356788899998765 78999
Q ss_pred CCCcEEEEeCC---CceEEeecCCCceEEEEEeCC--CeEEEEeCCCeEEEEecCCceEEEeecCC---CcEEEEEEeCC
Q 004329 169 SDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPG--VGIISASHDCTIRLWALTGQVLMEMVGHT---AIVYSIDSHAS 240 (760)
Q Consensus 169 ~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~h~---~~v~~v~~~p~ 240 (760)
.||+++-+|.+ +++.+++.|.++|.++++++. +.+++++.|+.+++|++.+........|. +...|.++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 99999999965 567788999999999999984 34899999999999998655444333443 34667777777
Q ss_pred C--eEEEEeCCCcEEEEe
Q 004329 241 G--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 241 ~--~l~s~s~Dg~I~iwd 256 (760)
- .++.||..+.++|||
T Consensus 430 ~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cceEEEecCccceEEEee
Confidence 6 899999999999999
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=160.00 Aligned_cols=274 Identities=16% Similarity=0.257 Sum_probs=201.3
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+..+|. |.. -.|+.|++.|. ||+|+.||.|.|||+.+-. ....+.+|..+|.|++|++++. .|++++
T Consensus 17 l~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr-----~LltsS 84 (405)
T KOG1273|consen 17 LTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGR-----KLLTSS 84 (405)
T ss_pred hceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCC-----Eeeeec
Confidence 445554 222 78999999999 9999999999999998654 6678899999999999999998 699999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEEeecC------CcCeEEEEEeC
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEFWEAH------NAPIQTVIRIP 160 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~~~------~~~v~~v~~~~ 160 (760)
.|..|.+||+..|.+++.+. ...+|+...|+ .+..+..--+..-.+-+.+.+.+..-.. ...-.+..|.+
T Consensus 85 ~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred CCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence 99999999999999988887 67889999997 3335554444445555544333332211 11122335677
Q ss_pred CCc-EEEEECCCcEEEEeCC--CceEEeecCC-CceEEEEEeCCCe-EEEEeCCCeEEEEecCC-----c--eE---EEe
Q 004329 161 SGE-IVSGSSDTTIKLWKGK--KCAQTFVGHT-DTVRGLSVMPGVG-IISASHDCTIRLWALTG-----Q--VL---MEM 225 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~-~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-----~--~~---~~~ 225 (760)
.|+ +++|...|.+.++|.. +++..++-.. ..|..+.++..+. ++.-+.|+.||.|+++. + .+ +.+
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~ 243 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKL 243 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHH
Confidence 777 7899999999999944 5666666555 7889999988655 89999999999999631 1 11 111
Q ss_pred e--cCCCcEEEEEEeCCC-eEEEEe-CCCcEEEEe--CCceEEEEec-C-CcEEEEEEccCCcEEEEEcCCcEEEEeCCC
Q 004329 226 V--GHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK--DGVCVQSIEH-P-GCVWDAKFLENGDIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 226 ~--~h~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd--~~~~~~~~~~-~-~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~ 297 (760)
. -....=.+++|+.+| ++++++ .-..++||. .|.+++.+.. . .....+.|+|-..++..-..|.+++|....
T Consensus 244 qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 244 QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 1 012234678899999 555544 456799999 7888887763 3 378889999988866666999999998653
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=6.1e-18 Score=177.05 Aligned_cols=264 Identities=15% Similarity=0.256 Sum_probs=209.7
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
.|..++|-|||. |+.+. +..+.+||...|. ....+++|++.|+|++|+.++. .+++|+.|..|.+|+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGk-----rFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGK-----RFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-----cccccccccceEEEEEEccCCc-----eeccCCCceeEEEecc
Confidence 899999999999 55554 4589999999776 6788999999999999999998 6899999999999986
Q ss_pred CCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEE
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW 176 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iw 176 (760)
+-.- +..+ .|...|.|+.|+ ...+++++-. ..-+|........-......+.+++|..||+ ++.|-.+|+|.+-
T Consensus 83 klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 83 KLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred cccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 4221 1222 599999999998 4457777654 3456755422211122345678899999998 7789999999998
Q ss_pred e-CCCceEEe---ecCCCceEEEEEeCC------CeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEE
Q 004329 177 K-GKKCAQTF---VGHTDTVRGLSVMPG------VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 177 d-~~~~~~~~---~~h~~~V~~l~~~~~------~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s 245 (760)
+ .++....+ .+...+|.+++|+|. ..+++.....++.++.++|+.+..-..-.-...|+.+.++| ++..
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 7 33333333 247789999999992 23888999999999999999887666666667899999999 9999
Q ss_pred EeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 246 GSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 246 ~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
||.|+.+++|- .|-.+.++. ....||.++..|+++ ++.||.||+|..|++-..
T Consensus 240 GGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 99999999998 777777776 455999999999999 899999999999987543
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=168.74 Aligned_cols=270 Identities=9% Similarity=0.172 Sum_probs=202.8
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
.+.|++|.|+|... +++++.||+++||.++ ++... .++.+.-...+|.+.+|.|++.. .+++++.....+.|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~--~lqS~~l~~fPi~~a~f~p~G~~----~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNP--KLQSIHLEKFPIQKAEFAPNGHS----VIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEec-CccCh--hheeeeeccCccceeeecCCCce----EEEecccceEEEEe
Confidence 57899999999998 9999999999999998 44322 34555556789999999999874 58999999999999
Q ss_pred ECCCCceEE--EEeCCCc-cEEEE--EecCCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEEC
Q 004329 98 DLGSGEKVQ--TLQGHKL-QVTGV--TLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSS 169 (760)
Q Consensus 98 d~~~~~~~~--~l~~h~~-~V~~l--~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~ 169 (760)
|+.+.+... ...++.. .+..+ +.++++++..+..|.|.+.-. +..+..++ -.+.|..++|+.+++ +++++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC
Confidence 998876533 3334442 23333 334778999999999999843 34444443 346788999999988 788889
Q ss_pred CCcEEEEeCCC--ceEEeecCC-CceEEEEEeCCCe-EEEEeCCCeEEEEec-------CCceEEEeecCCCcEEEEEEe
Q 004329 170 DTTIKLWKGKK--CAQTFVGHT-DTVRGLSVMPGVG-IISASHDCTIRLWAL-------TGQVLMEMVGHTAIVYSIDSH 238 (760)
Q Consensus 170 dg~i~iwd~~~--~~~~~~~h~-~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-------~~~~~~~~~~h~~~v~~v~~~ 238 (760)
+|.|.+||+++ +++.+.... -.-+++|.++++. +++|+..|.|.|||. ..+++..+..-...|+++.|+
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99999999664 566665422 1235666667555 999999999999995 345666777778899999999
Q ss_pred CCC-eEEEE--eCCCcEEEEeC--CceEEEEe----cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 239 ASG-LIVSG--SEDRFAKIWKD--GVCVQSIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 239 p~~-~l~s~--s~Dg~I~iwd~--~~~~~~~~----~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
+++ .|+.+ ..+..+|+-.- -+....+. .-+.|+|++|+|.|. ++.|..+|.+++|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999 55544 45777888772 23333333 224799999999777 8888889999999874
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=165.13 Aligned_cols=230 Identities=21% Similarity=0.302 Sum_probs=181.2
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC----------------CceEEEEeCCCccEEEEEecC-
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS----------------GEKVQTLQGHKLQVTGVTLDN- 122 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~----------------~~~~~~l~~h~~~V~~l~~~~- 122 (760)
....|.+.++-+.-.+-++.. +.++-+..|.|+||++.. .+++.++.+|...=.+++|++
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~---~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEV---LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccccceeeecccCCcc---eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 345678888888877776532 567778899999999832 357888899999999999984
Q ss_pred --CeEEEEECCCeEEEEECCc-----eeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCc----eEEeecCC
Q 004329 123 --EDIVSSSVDSTLKRWRKGK-----LVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKC----AQTFVGHT 189 (760)
Q Consensus 123 --~~l~sgs~dg~v~vwd~~~-----~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~----~~~~~~h~ 189 (760)
+.+++|..-+.|++|.... -...+.+|...|-.++|+|... |++||.||+|+|||++.. ....+.|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 5599999999999996532 2234567999999999999644 889999999999996643 33457899
Q ss_pred CceEEEEEeCCCe-EEEEeCCCeEEEEecC----CceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe---C-C
Q 004329 190 DTVRGLSVMPGVG-IISASHDCTIRLWALT----GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---D-G 258 (760)
Q Consensus 190 ~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~----~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd---~-~ 258 (760)
+.|+.|.|+.... |++|+.||+++|||++ ++++..+..|..+|+++.|+|.. .|+++|.|.+|.+|| . .
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999997555 9999999999999973 67888999999999999999976 899999999999999 1 1
Q ss_pred ------ceE---------EEEecCC--cEEEEEEccCCc--EEEEEcCCcEEE
Q 004329 259 ------VCV---------QSIEHPG--CVWDAKFLENGD--IVTACSDGVTRI 292 (760)
Q Consensus 259 ------~~~---------~~~~~~~--~v~~v~~~~~g~--lvt~~~dg~I~v 292 (760)
.-. ..|-|.+ .+..+.|++.-. +++.+.||.-.+
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 011 1122544 788899998655 777777875443
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.6e-19 Score=195.55 Aligned_cols=274 Identities=20% Similarity=0.283 Sum_probs=209.8
Q ss_pred EEEEcCCCe--EEEE----------ECCCeEEEEeCCCCCCcc-ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 24 GICVCDNVG--IATS----------SRDRTVRFWSLDPSDKRK-YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 24 ~v~~~~~~~--l~tg----------s~Dg~i~iWd~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
.++|+|.+. +++| |.+.++.||.++-..... ......+ ......+.++|.+.+... .|+|+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~-~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHS-HGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCc-cceeecccc
Confidence 467888776 4444 346677788765322110 1111111 235678899999988753 478999999
Q ss_pred CCeEEEEECCCC------ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEEeec----CCcCeEEEE
Q 004329 91 DTMVLVWDLGSG------EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEFWEA----HNAPIQTVI 157 (760)
Q Consensus 91 dg~I~vwd~~~~------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~~----~~~~v~~v~ 157 (760)
||.|.+||...- ..+.+...|.+.|..+.|+ ++.+++|+.||.|.|||+.+...-+.. ..+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998652 3456677899999999997 667999999999999998764443332 456799999
Q ss_pred EeCCCc--EEEEECCCcEEEEeCCCc--eEEeecCCC--ceEEEEEeCCCe--EEEEeCCC---eEEEEecC--CceEEE
Q 004329 158 RIPSGE--IVSGSSDTTIKLWKGKKC--AQTFVGHTD--TVRGLSVMPGVG--IISASHDC---TIRLWALT--GQVLME 224 (760)
Q Consensus 158 ~~~~~~--l~tgs~dg~i~iwd~~~~--~~~~~~h~~--~V~~l~~~~~~~--l~s~s~dg---~I~iwd~~--~~~~~~ 224 (760)
|+..-. |++++.+|.+.+||+++. +..+..|.. .+..+.|+|+.- +++++.|. .|.+||++ ..+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 987643 789999999999998765 444444443 477999999654 77777664 59999974 567888
Q ss_pred eecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecC-CcEEEEEEccCCc--EEEEEcCCcEEEEeCCC
Q 004329 225 MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWDAKFLENGD--IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~-~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~ 297 (760)
+.+|...|.++.|++.+ ++++++.|+.|.+|+ +++.+..+... +.+..+.|+|... +++++-||.|.|+.+..
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 89999999999999987 999999999999999 77788888754 4999999999776 67777799999999986
Q ss_pred Ce
Q 004329 298 DK 299 (760)
Q Consensus 298 ~~ 299 (760)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 65
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=3.7e-17 Score=158.67 Aligned_cols=285 Identities=20% Similarity=0.306 Sum_probs=211.9
Q ss_pred CCceEeEEec-cCCCCEEEEEEcC-----CCe-EEEEECCCeEEEEeCCCCCCccceeeeEe--eCCCCCeEEEEEeCCC
Q 004329 7 KEYQLSSELR-GHEDDVRGICVCD-----NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL--LGHTSFVGPLAWISPN 77 (760)
Q Consensus 7 ~~~~l~~~l~-gH~~~V~~v~~~~-----~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~ 77 (760)
..|++...++ +|..+|..++|.+ +-. ++|++. +++.+|...... .....+.. ..|......++|+-+.
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~--~ir~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG--GIRLLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc--ceeeeeeccCCCCCcceEEEEEEecC
Confidence 4577777765 7999999999982 222 666664 588899876322 11122222 2477778888888765
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEe---ecC
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFW---EAH 149 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~---~~~ 149 (760)
.. .+.+++.|+.-|.|+|.|+.++++...+.+|...|..+.+. .++++++|.|.+|++|++. .++..+ .+|
T Consensus 102 ~~-~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 102 NT-GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH 180 (385)
T ss_pred CC-CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence 43 24479999999999999999999999999999999999997 4579999999999999986 455554 579
Q ss_pred CcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCc--------e-------------------E---EeecCCCceEEEEEe
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC--------A-------------------Q---TFVGHTDTVRGLSVM 198 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~--------~-------------------~---~~~~h~~~V~~l~~~ 198 (760)
.+.|.++.|+.+|. +++++.|.++++|++... . . +-..|...|.|+.|.
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 99999999999987 889999999999986511 0 0 112366677777776
Q ss_pred CCCeEEEEeCCCeEEEEec-----------CC----ceEEEeecCCCcEEEEEEeCC--C-eEEEEeCCCcEEEEe----
Q 004329 199 PGVGIISASHDCTIRLWAL-----------TG----QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK---- 256 (760)
Q Consensus 199 ~~~~l~s~s~dg~I~iwd~-----------~~----~~~~~~~~h~~~v~~v~~~p~--~-~l~s~s~Dg~I~iwd---- 256 (760)
+..+++-|.++.|..|.. .. ..+.++.-....|+-+.|.-| + .|+.|...|.|.+||
T Consensus 261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 566889899999999975 11 123333344556666665544 4 899999999999999
Q ss_pred CCceEEEEec---CCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 257 DGVCVQSIEH---PGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 257 ~~~~~~~~~~---~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
......++.| ...|...+|+.||. ++..++|+.|.-||.-
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1212233333 34899999999999 8899999999999864
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=4.8e-17 Score=169.50 Aligned_cols=125 Identities=21% Similarity=0.316 Sum_probs=100.2
Q ss_pred EeEEeccCCCCEEEEEEcCC--CeEEEEECCCeEEEEeCCCCCCccceeeeEeeC-CCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 11 LSSELRGHEDDVRGICVCDN--VGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG-HTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~--~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
-+..|.+|.+.|+.+.|+|- +.|+|||.|..|+||.+..+............+ ..-.|.|+.|+|..+. |+.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-----il~ 145 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-----ILA 145 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-----eEE
Confidence 34567899999999999964 449999999999999998554333322223334 4567899999998763 455
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG 140 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~ 140 (760)
.+..|++++||+.+++....+.+|...|.+..|+ +..+++.+.|+.|+|||.+
T Consensus 146 s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 146 SGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred eccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 5567999999999999999999999999999997 5569999999999999853
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=1.2e-17 Score=175.04 Aligned_cols=236 Identities=22% Similarity=0.380 Sum_probs=174.3
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
.....|.+.|..+.|-|... |++++.|.+++.||+..+.. .-...+.+|.+.|.+++|.+.+.. .+++|+.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l---~G~~~~~GH~~SvkS~cf~~~n~~----vF~tGgRD 166 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL---VGGRLNLGHTGSVKSECFMPTNPA----VFCTGGRD 166 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeecccee---ecceeecccccccchhhhccCCCc----ceeeccCC
Confidence 44568999999999999554 99999999999999986652 223358899999999999999885 59999999
Q ss_pred CeEEEEECCCCc--------------------e-------EEEEeCCCc----cEEEEEec-CCeEEEEEC-CCeEEEEE
Q 004329 92 TMVLVWDLGSGE--------------------K-------VQTLQGHKL----QVTGVTLD-NEDIVSSSV-DSTLKRWR 138 (760)
Q Consensus 92 g~I~vwd~~~~~--------------------~-------~~~l~~h~~----~V~~l~~~-~~~l~sgs~-dg~v~vwd 138 (760)
|.|.|||+.-.. + +..-+.|.. .|+.+.|- +..|++++. |+.|+|||
T Consensus 167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD 246 (720)
T KOG0321|consen 167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD 246 (720)
T ss_pred CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence 999999985321 0 011112222 35566664 667999888 99999999
Q ss_pred CCceeEEee----------cC---CcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC----ceEEeecCCC---ceEEEEE
Q 004329 139 KGKLVEFWE----------AH---NAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK----CAQTFVGHTD---TVRGLSV 197 (760)
Q Consensus 139 ~~~~~~~~~----------~~---~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~----~~~~~~~h~~---~V~~l~~ 197 (760)
+++....++ .| ...+.++.....|. +++.|.|+.|++|++.. +...+.++.. .+.+ ..
T Consensus 247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~l 325 (720)
T KOG0321|consen 247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-EL 325 (720)
T ss_pred ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ec
Confidence 875444332 12 23456666666565 66777799999999654 2333333321 2222 34
Q ss_pred eCCCe-EEEEeCCCeEEEEecCC--ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 198 MPGVG-IISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 198 ~~~~~-l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
+|++. +++|+.|...++|.+.. .....+.+|.-.|++++|.|.. -++++++|..++||+
T Consensus 326 Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 56555 99999999999999753 4456677999999999999987 788889999999998
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=6.1e-18 Score=171.94 Aligned_cols=246 Identities=18% Similarity=0.266 Sum_probs=195.9
Q ss_pred ccccCCC---ceEeEEecc--CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeC
Q 004329 2 MDIDFKE---YQLSSELRG--HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWIS 75 (760)
Q Consensus 2 ~~~d~~~---~~l~~~l~g--H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 75 (760)
.+||+.. -..+..|.. ....|+++...|||+ |++|+.-.++.|||+..... .....+....-...+++.+|
T Consensus 443 KVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---rikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 443 KVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISP 519 (705)
T ss_pred EEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---chhhhcCCcchhhhhhhcCC
Confidence 4676643 123334432 356799999999999 99999999999999985542 12223333445677899999
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEee-cCCcC
Q 004329 76 PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFWE-AHNAP 152 (760)
Q Consensus 76 ~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~~~ 152 (760)
|.+ +.+++..||.|.|||+.+...++.+++|...+.||..+ +..|.+|+-|.+||.||.++..+..+ .....
T Consensus 520 Dak-----vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 520 DAK-----VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred ccc-----eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 988 68899999999999999999999999999999999997 56699999999999999875444332 23567
Q ss_pred eEEEEEeCCCc-EEEEECCCcEEEEeCCCce-EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecC
Q 004329 153 IQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA-QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGH 228 (760)
Q Consensus 153 v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~-~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h 228 (760)
|.++.++|++. ++.|-.++.+.+....+.. ..+.-|...|.++.|.+-++ |++.+.|.-+..|... |..+... ..
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-kE 673 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KE 673 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-cc
Confidence 99999999987 8899999999998865544 46667999999999999555 9999999999999963 4444443 34
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+.|.++.++.+. ++++|+.|....+|.
T Consensus 674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 674 SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 6789999999988 999999998887774
No 156
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=5.5e-19 Score=189.41 Aligned_cols=279 Identities=24% Similarity=0.375 Sum_probs=218.9
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
..+.++.|.||.+.|+|+.|...|. ++||+.|..++||..+++. +.....||.+.|+.++.+..+. +++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~ditdlavs~~n~-----~ia 248 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCRGHSGDITDLAVSSNNT-----MIA 248 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCCCCccccchhccchhhh-----hhh
Confidence 3456678899999999999999998 9999999999999988665 7788999999999999887766 689
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC-ceeEEe----e-cCCcCeEEEEEeC
Q 004329 87 SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG-KLVEFW----E-AHNAPIQTVIRIP 160 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~-~~~~~~----~-~~~~~v~~v~~~~ 160 (760)
+++.|..|++|.+.++.++..+.+|++.|++++|++.. +.+.||++++||.+ ...... + ....-+.++.+..
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence 99999999999999999999999999999999999655 88999999999987 222111 1 1234455666666
Q ss_pred CCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEE
Q 004329 161 SGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~ 236 (760)
.+. +.||+.|+.-+.|....+.. +...+.-+..+. +...+++-.+..+++|++ +|...+.+.+|...++.+.
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~~----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLAW----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred cccccccccCCcccccchhhHhhh----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence 655 89999999988886433211 111111111111 234677788899999995 7888888999999999999
Q ss_pred EeCCC--eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 237 SHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 237 ~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
++|-+ ...+++.||...||| .+.+++... ..+.+....|+++|. ++....-|.+.|.....++...
T Consensus 403 ~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 99988 677899999999999 666665554 344778889999999 7777778999999877665443
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-17 Score=171.83 Aligned_cols=252 Identities=23% Similarity=0.330 Sum_probs=183.2
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCC---CCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLD---PSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~---~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+|.+..++..|.+.|+.+.|.+-.. |++++.||++++|++. ........++.++.+|.++|.|+++.+.+.
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----- 357 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----- 357 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----
Confidence 4667779999999999999998777 9999999999999993 333345678889999999999999999988
Q ss_pred EEEEEeCCCeEEEEECCCC----------ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc-eeEEeecC-
Q 004329 84 GLVSGGMDTMVLVWDLGSG----------EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK-LVEFWEAH- 149 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~-~~~~~~~~- 149 (760)
.+++|+.||+|+.|++... .....+.||...|+.++++ ..+|++++.||+++.|+..+ ...++...
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc
Confidence 6999999999999966321 2345678999999999998 56699999999999997642 22333221
Q ss_pred -CcCeEEEEEeCCCc--EEEEECCCcEEEEe--CCCceEEeec-------CCCceEEEEEeCCCe-EEEEeCCCeEEEEe
Q 004329 150 -NAPIQTVIRIPSGE--IVSGSSDTTIKLWK--GKKCAQTFVG-------HTDTVRGLSVMPGVG-IISASHDCTIRLWA 216 (760)
Q Consensus 150 -~~~v~~v~~~~~~~--l~tgs~dg~i~iwd--~~~~~~~~~~-------h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd 216 (760)
.+--.++.+..... .++...-+.-.+++ +......+.. ....+.-+.++|+.. .+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 12223444433221 12222222222222 1122222221 123456677777554 78889999999999
Q ss_pred -cCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE
Q 004329 217 -LTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI 264 (760)
Q Consensus 217 -~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~ 264 (760)
.++..+.....|...++++++.|+| +|++++.||.+++|. ...|++..
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 5788899999999999999999999 999999999999998 44555443
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=7.6e-17 Score=163.93 Aligned_cols=259 Identities=19% Similarity=0.191 Sum_probs=188.3
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC--ce--EEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG--EK--VQTL 108 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~--~~--~~~l 108 (760)
|..+|...++++||......... ... ......+.+++|.....- .+++.+.|..+++|.-... +. +...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~-~~~--~t~~pg~~s~~w~~~n~l----vvas~~gdk~~~~~~K~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSE-YVH--QTAEPGDFSFNWQRRNFL----VVASMAGDKVMRIKEKDGKTPEVPRVRKL 77 (673)
T ss_pred eeeeccCCceEEeecccccCccc-ccc--CCCCCcceeeeccccceE----EEeecCCceeEEEecccCCCCccceeecc
Confidence 34444455899999874432111 111 111334899999877641 2445567888999975432 11 2222
Q ss_pred eCCC-ccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE-
Q 004329 109 QGHK-LQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ- 183 (760)
Q Consensus 109 ~~h~-~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~- 183 (760)
.+.. ..|.|..+ ..++++|+..+.|++||+. .+.+.++.|...|+++.+.-... +++++..|.|.+..+.+..+
T Consensus 78 ~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 78 TGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred ccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 2321 12222222 4679999999999999986 45567889999999999987655 88999999999998655443
Q ss_pred -EeecC-CCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceE--EEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEE
Q 004329 184 -TFVGH-TDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVL--MEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIW 255 (760)
Q Consensus 184 -~~~~h-~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~--~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iw 255 (760)
.|... ...|+-+.++|..+ +.+++.+|.|.+||.+|... .....|..+...|+|+|.. +|++.|.|..|.+|
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence 44433 45678999999555 78899999999999987643 2345799999999999988 99999999999999
Q ss_pred e--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 256 K--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 256 d--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
| .......+....+...++|+++|. +++|.+.|.|..||++..+
T Consensus 237 D~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9 445556666777899999999999 7888889999999998655
No 159
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.5e-16 Score=152.10 Aligned_cols=231 Identities=17% Similarity=0.236 Sum_probs=178.5
Q ss_pred cCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 17 GHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
+|.-.|.++.|-|-.. +.++|.|.+++|||..+.+ ... .....+.|++-+++|-... ..++++|..|-.|
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ-----~a~-~F~me~~VYshamSp~a~s--HcLiA~gtr~~~V 170 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ-----EAV-DFKMEGKVYSHAMSPMAMS--HCLIAAGTRDVQV 170 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccce-----eeE-EeecCceeehhhcChhhhc--ceEEEEecCCCcE
Confidence 6888999999986544 9999999999999998654 222 2234677888888887653 2468888999999
Q ss_pred EEEECCCCceEEEEeCCCccEEEEEecCCe---EEEEECCCeEEEEECC---ceeEEe--------------ecCCcCeE
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNED---IVSSSVDSTLKRWRKG---KLVEFW--------------EAHNAPIQ 154 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~---l~sgs~dg~v~vwd~~---~~~~~~--------------~~~~~~v~ 154 (760)
++.|+.+|.+..++.+|...|.++.|++.. |++|+.||.|++||++ .+...+ ..|.+.|.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 999999999999999999999999998443 9999999999999975 233332 24667899
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCceEEeec-----CCCce---EEEEEeC-CCeEEEEeCCCeEEEEe-cCCceEE
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVG-----HTDTV---RGLSVMP-GVGIISASHDCTIRLWA-LTGQVLM 223 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~-----h~~~V---~~l~~~~-~~~l~s~s~dg~I~iwd-~~~~~~~ 223 (760)
.++|..++. +++++.|..+++|+..+...++.. |...+ ..+. +- .+.++---.++.+.+++ ..+..+.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVR 329 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEE
Confidence 999999988 889999999999985543332221 11110 0011 11 22255555678999999 5889999
Q ss_pred EeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 224 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+.+|-..+.|..+-|+- ...+|..|+.|..|-
T Consensus 330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 999998899999998887 899999999999997
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=6e-17 Score=152.73 Aligned_cols=272 Identities=15% Similarity=0.243 Sum_probs=194.3
Q ss_pred eEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
.....|++|.+.|+|+.|..+++|.+|..-|.|.+|++.+.. ....+. .|...|+.+.-.|.+. +.+-
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r-----~~~~~r~~g~~~it~lq~~p~d~------l~tq 73 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTER-----DLPLIRLFGRLFITNLQSIPNDS------LDTQ 73 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCc-----cchhhhhhccceeeceeecCCcc------hhhc
Confidence 345677899999999999999999999999999999998655 333444 5688899999888765 8999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCC-e-----------EEEEECCceeEEe------ecCC
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDS-T-----------LKRWRKGKLVEFW------EAHN 150 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg-~-----------v~vwd~~~~~~~~------~~~~ 150 (760)
+.|+.+.+|++..+..+.. |+-.+.++.|..-.+...+... . +.+-|.+...... .+..
T Consensus 74 gRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred CCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 9999999999976544322 3334444444222222222111 1 1222332222211 1234
Q ss_pred cCeEEEEEeCC-Cc---EEEEECCCcEEEEeCCCc------------eEEeecCCCceEEEEEeCC-CeEEEEeCCCeEE
Q 004329 151 APIQTVIRIPS-GE---IVSGSSDTTIKLWKGKKC------------AQTFVGHTDTVRGLSVMPG-VGIISASHDCTIR 213 (760)
Q Consensus 151 ~~v~~v~~~~~-~~---l~tgs~dg~i~iwd~~~~------------~~~~~~h~~~V~~l~~~~~-~~l~s~s~dg~I~ 213 (760)
+.+.|..+..+ +. +++|.++|.+.+||.... ......|..+|.++.+.+. .+=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 56666664432 33 568999999999995542 2234569999999999872 3356788888899
Q ss_pred EEecCCc---e--EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEE
Q 004329 214 LWALTGQ---V--LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVT 283 (760)
Q Consensus 214 iwd~~~~---~--~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt 283 (760)
.|+++-. + ..+..-....|..+.+-||+ .++++|.|+.||||+ +..++..+. |.+.|.+++|+|+.. +++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh
Confidence 9986422 1 22233345678899999999 999999999999998 777888887 889999999999966 889
Q ss_pred EEcCCcEEEEeC
Q 004329 284 ACSDGVTRIWTV 295 (760)
Q Consensus 284 ~~~dg~I~vw~~ 295 (760)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.4e-17 Score=184.08 Aligned_cols=234 Identities=19% Similarity=0.222 Sum_probs=189.3
Q ss_pred CCCEEEEEEcCC-----CeEEEEECCCeEEEEeCCCC-CCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 19 EDDVRGICVCDN-----VGIATSSRDRTVRFWSLDPS-DKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 19 ~~~V~~v~~~~~-----~~l~tgs~Dg~i~iWd~~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
..+-+.++|.+. |.|+.|..||.|.+||...- .......+.....|.+.|..+.|++.... ++++|+.||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n----lLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN----LLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc----eeeccCCCC
Confidence 456678888743 33888999999999998752 12334556677889999999999998874 699999999
Q ss_pred eEEEEECCCCceEEEEe--CCCccEEEEEecC---CeEEEEECCCeEEEEECCce--eEEeecCCc--CeEEEEEeCCCc
Q 004329 93 MVLVWDLGSGEKVQTLQ--GHKLQVTGVTLDN---EDIVSSSVDSTLKRWRKGKL--VEFWEAHNA--PIQTVIRIPSGE 163 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~--~h~~~V~~l~~~~---~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~--~v~~v~~~~~~~ 163 (760)
.|.|||+...+.-.... .....|.+++|+. ..|++++.+|.+.|||+++. +..+..+.. .+..+.|+|++.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 99999998754443332 2467899999983 33999999999999999754 444444433 477899999865
Q ss_pred --EEEEECCC---cEEEEeCC---CceEEeecCCCceEEEEEeCCC-e-EEEEeCCCeEEEEec-CCceEEEeecCCCcE
Q 004329 164 --IVSGSSDT---TIKLWKGK---KCAQTFVGHTDTVRGLSVMPGV-G-IISASHDCTIRLWAL-TGQVLMEMVGHTAIV 232 (760)
Q Consensus 164 --l~tgs~dg---~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~-~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v 232 (760)
+++++.|. .|.+||++ .+.+.+++|...|.++.|++.+ . +++++.|++|.+|+. +++.+..+.....++
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~ 299 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWC 299 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcce
Confidence 77777654 59999965 4778889999999999999943 4 999999999999996 678888888888999
Q ss_pred EEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 233 YSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 233 ~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
..+.|+|.. .+++++-||.|.|+.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeee
Confidence 999999987 899999999999998
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.1e-16 Score=149.66 Aligned_cols=240 Identities=20% Similarity=0.284 Sum_probs=174.4
Q ss_pred EeEEeccCCCCEEEEEEcCCCe--EEEEECC-------CeEEEEeCCCCCC----ccceeeeEee-CCCCCeEEEEEeCC
Q 004329 11 LSSELRGHEDDVRGICVCDNVG--IATSSRD-------RTVRFWSLDPSDK----RKYHSSKILL-GHTSFVGPLAWISP 76 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~--l~tgs~D-------g~i~iWd~~~~~~----~~~~~~~~~~-~h~~~V~~l~~~~~ 76 (760)
+...|..|.+.|..++-+|-.. |+|+-.| -.+.||.+..... ..+.+...+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3456778899999999998766 6666442 2578999863321 2234444454 45668999999998
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCce-EEEEe-----CCCccEEEEEec---CCeEEEEECCCeEEEEECCceeE---
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGEK-VQTLQ-----GHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVE--- 144 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~-----~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~--- 144 (760)
+.+ +++- .|..|.+|+++.+.. +..+. +|....++-.|+ ++..+....|+++..||.+....
T Consensus 135 s~k-----lasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 135 SDK-----LASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCe-----eEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcc
Confidence 873 4444 489999999987755 44432 345566666775 45577788899999999874333
Q ss_pred EeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEec
Q 004329 145 FWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWAL 217 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~ 217 (760)
.-..|...|..+.|+|+.+ +++|+.||.|++||.++ +++.+.+|...|.++.|+| +..+++++.|..|.+|..
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 3346888899999999866 88999999999999664 6678889999999999999 555999999999999963
Q ss_pred ---CC---------------------------ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 218 ---TG---------------------------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 218 ---~~---------------------------~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
.. ..+.++..|...|++++|+.-. .|++-+.||.+.|=.
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 11 1233455667777777776655 666677777666543
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=147.11 Aligned_cols=300 Identities=13% Similarity=0.171 Sum_probs=203.7
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--cee
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLV 143 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~ 143 (760)
..|+.|++-|. ++++|+.||.|.+||+.+...-+.+.+|..+|++++|+ ++.|+++|.|..+.+||.. .++
T Consensus 26 a~~~~Fs~~G~-----~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGD-----YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcc-----eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 78999999998 79999999999999999999888999999999999998 6679999999999999984 444
Q ss_pred EEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceEEeecCC------CceEEEEEeCCC-eEEEEeCCCeEEE
Q 004329 144 EFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQTFVGHT------DTVRGLSVMPGV-GIISASHDCTIRL 214 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~~~~~h~------~~V~~l~~~~~~-~l~s~s~dg~I~i 214 (760)
+.+ ...++|+.+.|+|..+ .++.--+..-.+.+.....+.+-... ..-.+..|.+.+ .+++|...|.+.+
T Consensus 101 ~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 101 KRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred eEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 443 3467999999999654 44444444444444443444332211 111223455544 4999999999999
Q ss_pred EecC-CceEEEeecCC-CcEEEEEEeCCC-eEEEEeCCCcEEEEeCCceE-----------EEEe---cCCcEEEEEEcc
Q 004329 215 WALT-GQVLMEMVGHT-AIVYSIDSHASG-LIVSGSEDRFAKIWKDGVCV-----------QSIE---HPGCVWDAKFLE 277 (760)
Q Consensus 215 wd~~-~~~~~~~~~h~-~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~~-----------~~~~---~~~~v~~v~~~~ 277 (760)
+|.. -+++..++-.. ..|..+.++..| .|+.-+.|+.||.|+..... +.++ ....-.+++|+.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 9964 46666666554 788999999999 99999999999999822111 1111 233557889999
Q ss_pred CCcEEEEEc--CCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCc
Q 004329 278 NGDIVTACS--DGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDN 355 (760)
Q Consensus 278 ~g~lvt~~~--dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~ 355 (760)
+|.++++++ ...++||....|.++..+... .|.+.+.+.++.-.. .++ +-..
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~------------------------kgE~l~DV~whp~rp-~i~-si~s 313 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGT------------------------KGEELLDVNWHPVRP-IIA-SIAS 313 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCC------------------------chhheeeccccccee-eee-eccC
Confidence 999555544 678999999999877654411 223344444543322 222 2366
Q ss_pred eEEEEEeccc-cceeecc-ceeeCCCCCCCcccccCccceEEEEeecCCCCC
Q 004329 356 GVAYSWDMKE-QKWDKLG-EVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEP 405 (760)
Q Consensus 356 ~~~~~w~~~~-~~W~~~g-~~~~~~~~~~~~~~~~g~~yd~vf~vdi~~g~~ 405 (760)
+.+|+|.... -.|.... ++.. -.+...|+.++-. ||++-|++..
T Consensus 314 g~v~iw~~~~~enwsafAPdFqe----leeNieY~EkEde--FDi~DE~~~e 359 (405)
T KOG1273|consen 314 GVVYIWAVVQVENWSAFAPDFQE----LEENIEYEEKEDE--FDIEDEDEQE 359 (405)
T ss_pred CceEEEEeecccchhhcCchHHH----HHhhhhhcccccc--CCcccccccc
Confidence 8899998543 4576533 1110 0133444444443 6777777653
No 164
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=1.9e-15 Score=155.20 Aligned_cols=263 Identities=15% Similarity=0.159 Sum_probs=187.5
Q ss_pred cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE-eCC--CCCCCCcEEEEEeCCCe
Q 004329 17 GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW-ISP--NEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~--~~~~~~~~l~sgs~dg~ 93 (760)
-|...|.|+.|+.+..++.++.|..+.+|.--+.+. ...+.--...|....+ -+. +..-....++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-----~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-----VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-----hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCce
Confidence 477788899999887777777777666665332221 1111111111111111 111 11112236889999999
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC-CceeEEeecCCcCeEEEEEeCCCcEEEEECC
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK-GKLVEFWEAHNAPIQTVIRIPSGEIVSGSSD 170 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~-~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~d 170 (760)
+.+.+- .++....+..|.+.+.|-.|+ +.-+++++.||.|++|.- +-...++.....+|.|++|.|+..-+.-+..
T Consensus 87 f~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 87 FVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred EEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 999884 577778888999999999998 444999999999999965 4444455566789999999998773333444
Q ss_pred CcEEEEe--CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEe
Q 004329 171 TTIKLWK--GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGS 247 (760)
Q Consensus 171 g~i~iwd--~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s 247 (760)
+.+.+=. .+.....++.|.+-|.++.|++.+. +++|++|...++||-.|..+..-..|..+|++++|.|+..++.++
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S 245 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS 245 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeee
Confidence 5555443 4455667889999999999999555 999999999999999999999999999999999999996555554
Q ss_pred CCCcEEEEeCCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 248 EDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 248 ~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
. .+.| ..-...++|..++|++||. +..|++.|.+.+=.
T Consensus 246 ~-nt~R--------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 246 Y-NTAR--------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred e-eeee--------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 3 2333 1122456999999999999 77888888876543
No 165
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=2.7e-15 Score=163.95 Aligned_cols=250 Identities=20% Similarity=0.292 Sum_probs=187.2
Q ss_pred CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce--EEE----EeCCC
Q 004329 39 DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK--VQT----LQGHK 112 (760)
Q Consensus 39 Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~----l~~h~ 112 (760)
++.+.+|++..... +. ........|.|++|+|.... +++.|+.+|.|.+||+..+.. ... ...|.
T Consensus 221 ~~~~~vW~~~~p~~----Pe-~~~~~~s~v~~~~f~p~~p~----ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT----PE-LVLESPSEVTCLKFCPFDPN----LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred CceEEEEecCCCCC----ce-EEEecCCceeEEEeccCCcc----eEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 35799999985421 22 22335788999999999875 599999999999999987654 222 23688
Q ss_pred ccEEEEEec----CCeEEEEECCCeEEEEECCceeE--------Eee------cCCcCeEEEEEeCCC--cEEEEECCCc
Q 004329 113 LQVTGVTLD----NEDIVSSSVDSTLKRWRKGKLVE--------FWE------AHNAPIQTVIRIPSG--EIVSGSSDTT 172 (760)
Q Consensus 113 ~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~~~~--------~~~------~~~~~v~~v~~~~~~--~l~tgs~dg~ 172 (760)
.+|+.+.|. +..+++++.||.|..|+++.... ... .....++++.|.+.. .++.|+.+|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 999999994 44499999999999997652111 011 123467888998864 3999999999
Q ss_pred EEEEe---CCC-------ceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEec--CCceEEEeecCCCcEEEEEEe
Q 004329 173 IKLWK---GKK-------CAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSH 238 (760)
Q Consensus 173 i~iwd---~~~-------~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~--~~~~~~~~~~h~~~v~~v~~~ 238 (760)
|..-+ ... ....+..|.++|+++.++| ... |++++ |.++++|+. ...++..+..+...+++++||
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 98733 221 2335567899999999999 334 55555 999999984 466777788888899999999
Q ss_pred CCC--eEEEEeCCCcEEEEe----CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 239 ASG--LIVSGSEDRFAKIWK----DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 239 p~~--~l~s~s~Dg~I~iwd----~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
|.. .|+++..||.+.+|| ...++.+.. +....+.+.|+++|+ +++|...|.+++|++...
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 998 899999999999999 334444443 344677888888899 778888999999999643
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=9.9e-14 Score=151.94 Aligned_cols=285 Identities=28% Similarity=0.484 Sum_probs=217.0
Q ss_pred ccccCCC-ceEeEEeccCCCCEEEEEEcCCCe-EEEEEC-CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKE-YQLSSELRGHEDDVRGICVCDNVG-IATSSR-DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~-~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..||... +.....+.+|...|.+++|+|++. +++++. |+.+++|+...+. ....+.+|...|.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEEEcCCcc
Confidence 4677777 888899999999999999999997 888875 9999999998633 5667777999999999997775
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEE-EEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ce-eEEeecCCcC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQ-TLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KL-VEFWEAHNAP 152 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~-~~~~~~~~~~ 152 (760)
. .+++++.|+.|++||...+.... .+.+|...+ ...|+ +..+++++.|+.+++|+.. .. ......|...
T Consensus 212 ~----~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 212 L----LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred e----EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 2 35555999999999998888877 688888874 33554 5578899999999999875 22 3334678899
Q ss_pred eEEEEEeCCCc-EEEEECCCcEEEEeCCCc--eEEee--cCCCceEEEEEeCC-CeEEEE-eCCCeEEEEecCCceEEEe
Q 004329 153 IQTVIRIPSGE-IVSGSSDTTIKLWKGKKC--AQTFV--GHTDTVRGLSVMPG-VGIISA-SHDCTIRLWALTGQVLMEM 225 (760)
Q Consensus 153 v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~--~~~~~--~h~~~V~~l~~~~~-~~l~s~-s~dg~I~iwd~~~~~~~~~ 225 (760)
+.++.+.|++. +++++.|+.+++|+.... ..... .|...+..+.+.++ ..++.+ ..|+.+.+|+.........
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 99999999655 667888889999985543 23333 67778999999333 345555 6889999999765442222
Q ss_pred ecCCCcEEEEEEeCCC-eEEE-EeCCCcEEEEe--CCceEEEEecC-CcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 226 VGHTAIVYSIDSHASG-LIVS-GSEDRFAKIWK--DGVCVQSIEHP-GCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~-~l~s-~s~Dg~I~iwd--~~~~~~~~~~~-~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
......+..+.+.+ . .+.. +..++.+.+|+ ........... ..+....+.+++. ++.++.++.+++|+...
T Consensus 367 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 367 LEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 22222288888888 5 3443 78999999999 44444444444 7899999999998 67778899999999988
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.2e-15 Score=154.48 Aligned_cols=246 Identities=13% Similarity=0.155 Sum_probs=190.1
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~ 78 (760)
|..|-+.-..++.+.--..+|.+.+|.|+|. ++++++-..++.||+.+.+. .......++ ...+.....+++++
T Consensus 240 fqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~---~k~~~~~g~e~~~~e~FeVShd~~ 316 (514)
T KOG2055|consen 240 FQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV---TKLKPPYGVEEKSMERFEVSHDSN 316 (514)
T ss_pred EEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc---ccccCCCCcccchhheeEecCCCC
Confidence 4556666667777777788999999999998 99999999999999987663 233334444 34667778889887
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCc-Ce
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNA-PI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~-~v 153 (760)
+|+..|..|.|++....+++.+..++ -.+.|..++|+ +..+++++.+|.|.+||++ .+++.+....+ .-
T Consensus 317 -----fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g 390 (514)
T KOG2055|consen 317 -----FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG 390 (514)
T ss_pred -----eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce
Confidence 69999999999999999999998887 56789999996 5569999999999999987 45555543322 33
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCC--------CceEEeecCCCceEEEEEeCCCe-EEEE--eCCCeEEEEecCCce
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGK--------KCAQTFVGHTDTVRGLSVMPGVG-IISA--SHDCTIRLWALTGQV 221 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~--------~~~~~~~~h~~~V~~l~~~~~~~-l~s~--s~dg~I~iwd~~~~~ 221 (760)
++++.+.++. +++|+..|.|.|||.. +++..+..-...|+++.|+++.. ++.+ ..+..+|+-.+....
T Consensus 391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 5667778877 7899999999999844 34455666678899999999887 4444 456778888764433
Q ss_pred EEE-ee---cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 222 LME-MV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 222 ~~~-~~---~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.. +. ..-+.|+|++|+|.+ +++.|.++|.+.+|.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 322 22 234679999999987 999999999999996
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=4.4e-15 Score=142.04 Aligned_cols=269 Identities=16% Similarity=0.199 Sum_probs=194.7
Q ss_pred CCEEEEEEc--CCCe--EEEEEC----CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 20 DDVRGICVC--DNVG--IATSSR----DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 20 ~~V~~v~~~--~~~~--l~tgs~----Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
-.+.++.|+ ++.+ |+.||. .+.|.|-.++... ..... .....|..+++.+.|.|+.......+|++++
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s-~e~~~-~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS-GELVE-DANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC-Cceec-cCCCCCCCCccceEecCCccccCcchhhccc--
Confidence 457888888 3333 888874 4677777765222 11111 2225799999999999998533234455544
Q ss_pred CeEEEEECCCC--ce--EEEE-----eCCCccEEEEEec---CCeEEEEECCCeEEEEECCc-----eeEEeecCCcCeE
Q 004329 92 TMVLVWDLGSG--EK--VQTL-----QGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK-----LVEFWEAHNAPIQ 154 (760)
Q Consensus 92 g~I~vwd~~~~--~~--~~~l-----~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~-----~~~~~~~~~~~v~ 154 (760)
..+++|.+... +. ...+ ..+..+++++.|+ .+++.++|-|-+..|||+.. ....+-.|...|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 57999998742 11 1112 2456789999996 77799999999999999764 3556778999999
Q ss_pred EEEEeCCCc--EEEEECCCcEEEEeCCCceE---Eeec--CCCceEEEEEeCCCe--EEEEeCC-CeEEEEecC--CceE
Q 004329 155 TVIRIPSGE--IVSGSSDTTIKLWKGKKCAQ---TFVG--HTDTVRGLSVMPGVG--IISASHD-CTIRLWALT--GQVL 222 (760)
Q Consensus 155 ~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~---~~~~--h~~~V~~l~~~~~~~--l~s~s~d-g~I~iwd~~--~~~~ 222 (760)
.++|...+. |++.+.||.+|+||++...+ .++. ...+...++|++... +++-..| ..|.+.|++ ..++
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 999999665 88999999999999886554 2333 246778899988443 6655444 568899964 6788
Q ss_pred EEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeCCc--------eEEEEecCCcEEEEEEccCC-cEEEEEcCCcEE
Q 004329 223 MEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWKDGV--------CVQSIEHPGCVWDAKFLENG-DIVTACSDGVTR 291 (760)
Q Consensus 223 ~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~~~--------~~~~~~~~~~v~~v~~~~~g-~lvt~~~dg~I~ 291 (760)
.++.+|.+.|++++|.|.. .++++|.|..+.+||-.. ++......+.|+.+.|++.. +-++.+.+..+.
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeee
Confidence 9999999999999999987 999999999999999222 22233356799999999754 466666666555
Q ss_pred E
Q 004329 292 I 292 (760)
Q Consensus 292 v 292 (760)
+
T Consensus 361 i 361 (364)
T KOG0290|consen 361 I 361 (364)
T ss_pred E
Confidence 4
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=3.5e-15 Score=144.69 Aligned_cols=268 Identities=15% Similarity=0.213 Sum_probs=191.1
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCc-------cceeeeEe-eCCCCCeEEEEEeCCCCCC--CCcEEEEEe
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKR-------KYHSSKIL-LGHTSFVGPLAWISPNEEF--PEGGLVSGG 89 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~-------~~~~~~~~-~~h~~~V~~l~~~~~~~~~--~~~~l~sgs 89 (760)
-...+.|+|||. |++-+.|..+++|++...... .......+ ......|...+|-+.-+.. ...++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 346788999999 999999999999998532110 11111111 2235667888886432211 123788999
Q ss_pred CCCeEEEEECCCCceEEEEeC--CCcc---EEEEEec-CCeEEEEECCCeEEEEECCc-----eeEEe-----ecCCcCe
Q 004329 90 MDTMVLVWDLGSGEKVQTLQG--HKLQ---VTGVTLD-NEDIVSSSVDSTLKRWRKGK-----LVEFW-----EAHNAPI 153 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~--h~~~---V~~l~~~-~~~l~sgs~dg~v~vwd~~~-----~~~~~-----~~~~~~v 153 (760)
.+.-|++||.-+|+....+.+ |... ..+++|+ ++.-+.++....|+++|+.. ..... .+..+.+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999999998877663 4443 4578897 66666677888999999731 11111 2336778
Q ss_pred EEEEEeCCCc--EEEEECCCcEEEE--eCCCceEEeecCCCceEEEEEeCCCe-EEEEeC-CCeEEEEecC--CceEEEe
Q 004329 154 QTVIRIPSGE--IVSGSSDTTIKLW--KGKKCAQTFVGHTDTVRGLSVMPGVG-IISASH-DCTIRLWALT--GQVLMEM 225 (760)
Q Consensus 154 ~~v~~~~~~~--l~tgs~dg~i~iw--d~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-dg~I~iwd~~--~~~~~~~ 225 (760)
.+++++|-.. ++.|+....+-+| +.+.+...+-+|.+.|+.++|.+++. |++|+. |..|..||++ +.++..+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 8999999644 7788888776666 46778888889999999999999665 888775 7889999985 5667777
Q ss_pred ecCCC-cEEE--EEEeCCC-eEEEEeCCCcEEEEeC---CceEEEEe-cCCcEEEEEEccCCcEEEEEcCC
Q 004329 226 VGHTA-IVYS--IDSHASG-LIVSGSEDRFAKIWKD---GVCVQSIE-HPGCVWDAKFLENGDIVTACSDG 288 (760)
Q Consensus 226 ~~h~~-~v~~--v~~~p~~-~l~s~s~Dg~I~iwd~---~~~~~~~~-~~~~v~~v~~~~~g~lvt~~~dg 288 (760)
..|.. .-.. ....|++ .|++|+.||.|++||. +.....+. +...++.++++|--.+++.++..
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 77755 2223 3445777 9999999999999992 44344443 77799999999986665555443
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=4.1e-13 Score=147.08 Aligned_cols=277 Identities=34% Similarity=0.575 Sum_probs=212.3
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC-CCeEEEEE-eCCCCCCCCcEEEE-Ee
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT-SFVGPLAW-ISPNEEFPEGGLVS-GG 89 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~-~~V~~l~~-~~~~~~~~~~~l~s-gs 89 (760)
.+.+|...+.++.+.+.+. ++.++.|+.+.+|+...+. .....+..+. ..+..+.+ .++... .+.. +.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 131 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALSSPDGNS----ILLASSS 131 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEECCCcce----EEeccCC
Confidence 4668999999999999888 8888889999999987543 1334444433 36777777 555541 2444 34
Q ss_pred CCCeEEEEECCC-CceEEEEeCCCccEEEEEec--CCeEEEEEC-CCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc
Q 004329 90 MDTMVLVWDLGS-GEKVQTLQGHKLQVTGVTLD--NEDIVSSSV-DSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 90 ~dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
.|+.+.+|+... ......+..|...|.++.++ +..+++++. |+.+++|+.. .....+..|...+.++.++|++.
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 499999999988 78888899999999999997 335777775 9999999986 57788888999999999999886
Q ss_pred -EEEE-ECCCcEEEEeCC--CceE-EeecCCCceEEEEEeCCC-eEEEEeCCCeEEEEecCCce--EEEeecCCCcEEEE
Q 004329 164 -IVSG-SSDTTIKLWKGK--KCAQ-TFVGHTDTVRGLSVMPGV-GIISASHDCTIRLWALTGQV--LMEMVGHTAIVYSI 235 (760)
Q Consensus 164 -l~tg-s~dg~i~iwd~~--~~~~-~~~~h~~~V~~l~~~~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~~h~~~v~~v 235 (760)
++++ +.|+.+++||.. .... .+.+|.... ...|++++ .+++++.|+.+++|+..... ...+.+|...+.++
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence 5544 899999999855 3444 577787775 44888876 58899999999999975322 44446889999999
Q ss_pred EEeCCC-eEEEEeCCCcEEEEe--CCceEEEE---ecCCcEEEEEEccCCc-EEEE-EcCCcEEEEeCCCCe
Q 004329 236 DSHASG-LIVSGSEDRFAKIWK--DGVCVQSI---EHPGCVWDAKFLENGD-IVTA-CSDGVTRIWTVHSDK 299 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~---~~~~~v~~v~~~~~g~-lvt~-~~dg~I~vw~~~~~~ 299 (760)
.+.|++ .+++++.|+.+++|+ ........ .|...+..+.|.+++. ++.+ ..|+.+++|+.....
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999976 777799999999999 33333332 4666799999943324 5555 578999999999877
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=9.3e-15 Score=146.07 Aligned_cols=278 Identities=19% Similarity=0.303 Sum_probs=197.2
Q ss_pred CCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCc----cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 19 EDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKR----KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 19 ~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
..+|.++.|.++.. ++||+.|..||+|.+..+... .......+..|...|+++.|+|+++ ++++|+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-----lLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-----LLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-----eeeecCCCc
Confidence 46899999987665 999999999999998765432 2344556788999999999999998 799999999
Q ss_pred eEEEEECC--------C--------CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcC
Q 004329 93 MVLVWDLG--------S--------GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAP 152 (760)
Q Consensus 93 ~I~vwd~~--------~--------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~ 152 (760)
.|.+|... + ....+.+.+|...+..++|. +..+++++.|..+++||. +.....+..|..-
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 99999765 2 12345577899999999997 566999999999999997 4778888999999
Q ss_pred eEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceE-----Ee---e-----------cCC----CceEEEEEeCCCe-EEE
Q 004329 153 IQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQ-----TF---V-----------GHT----DTVRGLSVMPGVG-IIS 205 (760)
Q Consensus 153 v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~-----~~---~-----------~h~----~~V~~l~~~~~~~-l~s 205 (760)
+..++|.|-++ +++-+.|...+.++... ..+ .+ . -|. .-.+.++|+|++. +++
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 99999999877 66777777666665221 110 00 0 011 2245677888776 443
Q ss_pred Ee----CCCeE-----EEEec--CCceEEEeecCCCcEEEEEEe------------------CCCeEEEEeCCCcEEEEe
Q 004329 206 AS----HDCTI-----RLWAL--TGQVLMEMVGHTAIVYSIDSH------------------ASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 206 ~s----~dg~I-----~iwd~--~~~~~~~~~~h~~~v~~v~~~------------------p~~~l~s~s~Dg~I~iwd 256 (760)
.+ .++.+ ++++- ..++...+.+...+...+.++ |-+++++......|.+||
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvyd 327 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYD 327 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEec
Confidence 32 12322 34431 123333333333344444333 344333344455699999
Q ss_pred CCc--eEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 257 DGV--CVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 257 ~~~--~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
+.. ++.... |-..++.++|++||. ++..+.||...+-.+++.++-
T Consensus 328 tq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 328 TQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 554 444444 788999999999999 888888999999998887754
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=148.49 Aligned_cols=256 Identities=20% Similarity=0.301 Sum_probs=180.1
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE--EeC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT--LQG 110 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~--l~~ 110 (760)
++++-..|+|++||..+++ ....++++...++.+.|..... ...+.+|+.||+|++||+++...... ...
T Consensus 43 vav~lSngsv~lyd~~tg~-----~l~~fk~~~~~~N~vrf~~~ds---~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQ-----LLEEFKGPPATTNGVRFISCDS---PHGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred EEEEecCCeEEEEeccchh-----hhheecCCCCcccceEEecCCC---CCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 8999999999999999876 5677888999999999988632 12599999999999999988755444 344
Q ss_pred CC-ccEEEEEec-CCe-EEEEE----CCCeEEEEECCceeE----EeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEe
Q 004329 111 HK-LQVTGVTLD-NED-IVSSS----VDSTLKRWRKGKLVE----FWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWK 177 (760)
Q Consensus 111 h~-~~V~~l~~~-~~~-l~sgs----~dg~v~vwd~~~~~~----~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd 177 (760)
|+ .+..|++.+ .+. +++|+ .+-.|.+||.+...+ ....|...|+++.|+|++. +++||.||.|.+||
T Consensus 115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 55 456677775 444 55543 355699999874333 3468999999999999855 88999999999999
Q ss_pred CCCc-----eEEeecCCCceEEEEEeCCC--eEEEEeCCCeEEEEecC-CceEEEeecC----------CCcEEEEEE-e
Q 004329 178 GKKC-----AQTFVGHTDTVRGLSVMPGV--GIISASHDCTIRLWALT-GQVLMEMVGH----------TAIVYSIDS-H 238 (760)
Q Consensus 178 ~~~~-----~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~I~iwd~~-~~~~~~~~~h----------~~~v~~v~~-~ 238 (760)
+... +...-.|...|..+.|+.++ ++.+-+..++..+|++. +.+...+... ...-+-|.. +
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~ 274 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS 274 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc
Confidence 7653 22334577889999999877 59999999999999974 3322222111 000111211 2
Q ss_pred CCC--eEEEEeC-CCcEEEEe-----CCc---eEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 239 ASG--LIVSGSE-DRFAKIWK-----DGV---CVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 239 p~~--~l~s~s~-Dg~I~iwd-----~~~---~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
|.+ ..+.++. -+...++- .+. ....+. |...|+++.|...+. +.+||.||.+.+|...
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 333 4444443 56666553 222 222222 455788899887777 8999999999999963
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-15 Score=162.75 Aligned_cols=271 Identities=17% Similarity=0.237 Sum_probs=193.8
Q ss_pred CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee---CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 20 DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL---GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
..-+.+.|+|-.. ++++...-.|+|||.+.+.. ...+. .....|+.+.+....+. .++++|+.||.|+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----l~~F~n~~~~~t~Vs~l~liNe~D~---aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----LNGFDNGAFPDTRVSDLELINEQDD---ALLLTASSDGVIR 1136 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCce-----eccccCCCCCCCccceeeeecccch---hheeeeccCceEE
Confidence 3456677887666 88887777999999986652 22222 23567999998876653 3799999999999
Q ss_pred EEECCC-----CceEEEEeC-------CCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEee---cCCcCeEEEEE
Q 004329 96 VWDLGS-----GEKVQTLQG-------HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFWE---AHNAPIQTVIR 158 (760)
Q Consensus 96 vwd~~~-----~~~~~~l~~-------h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~---~~~~~v~~v~~ 158 (760)
||+--. .+.+....+ ..+.-.-+.|. .+++++++.-..|+|||..+...... +....|+++..
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 997522 233333221 11222334564 67788888899999999875444332 33445666644
Q ss_pred eC-CCc-EEEEECCCcEEEEeCCC-----ceEEeecCCCc--eEEEEEeCCCe--EEEEeCCCeEEEEecCCceEE---E
Q 004329 159 IP-SGE-IVSGSSDTTIKLWKGKK-----CAQTFVGHTDT--VRGLSVMPGVG--IISASHDCTIRLWALTGQVLM---E 224 (760)
Q Consensus 159 ~~-~~~-l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~--V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~---~ 224 (760)
.. .|. +++|..||.+++||.+. .+..++.|++. |..+.+.+++. +++|+.||.|++||++..... +
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 33 234 88999999999999553 45677889888 99999988544 999999999999998774222 2
Q ss_pred eecCC---CcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe--------cCCcEEEEEEccCCc-EEEEEcCCcE
Q 004329 225 MVGHT---AIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--------HPGCVWDAKFLENGD-IVTACSDGVT 290 (760)
Q Consensus 225 ~~~h~---~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~--------~~~~v~~v~~~~~g~-lvt~~~dg~I 290 (760)
...|. +..+++..++.. .+++|+. +.|+||+ .|+.+..+. ..+++.|++|+|-.- +++|..|..|
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 22333 358999999998 8888887 9999999 666665554 235789999999876 7888889999
Q ss_pred EEEeCCCCe
Q 004329 291 RIWTVHSDK 299 (760)
Q Consensus 291 ~vw~~~~~~ 299 (760)
.||.....+
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999987654
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=159.38 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=198.1
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCceeE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVE 144 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~ 144 (760)
.|+.++|-|++.+. +++ .+..+.+||...|....++++|...|.|++|+ +.++++|+.|+.|.+|.....-.
T Consensus 14 ci~d~afkPDGsqL----~lA--Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQL----ILA--AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceE----EEe--cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 79999999999852 333 34579999999999999999999999999997 67799999999999997653333
Q ss_pred EeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEE
Q 004329 145 FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLM 223 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~ 223 (760)
.--.|.+.|.|+.|+|-...+..+.-...-+|...+....-......+.+.+|..|+. ++.|-.+|+|.+-+-.++...
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 3447999999999999877444344455678875432222222346678889998877 889999999999998877665
Q ss_pred Eee---cCCCcEEEEEEeCCC------eEEEEeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEE
Q 004329 224 EMV---GHTAIVYSIDSHASG------LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTR 291 (760)
Q Consensus 224 ~~~---~h~~~v~~v~~~p~~------~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~ 291 (760)
.+. |..++|++++|+|.. .++......++.++. .|+.+..-. ..-...|+.+.++|. ++.||+|+.++
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence 555 478899999999963 688888888888888 676665333 333667899999999 89999999999
Q ss_pred EEeCCCCeeechhhhhhhhhcc-----cceEEeccccCceeeecC
Q 004329 292 IWTVHSDKVADSLELEAYASEL-----SQYKLCRKKVGGLKLEDL 331 (760)
Q Consensus 292 vw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~i~~~~l 331 (760)
+|..+.-++-..-+.+...+.+ +++...+..+|++--+.+
T Consensus 248 ~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 248 LFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9998766655544455555555 466667777777766554
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.8e-16 Score=162.03 Aligned_cols=241 Identities=19% Similarity=0.294 Sum_probs=177.7
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC--------CceEEEEeCCCccEEEEEec--CCe
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS--------GEKVQTLQGHKLQVTGVTLD--NED 124 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~--------~~~~~~l~~h~~~V~~l~~~--~~~ 124 (760)
|....++..|...|..+.|.+... .+++++.||.|.+|+++. -+++.++.+|.++|.|+++. +..
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep-----~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEP-----VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCC-----eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 445557788999999999998877 699999999999999932 15788999999999999996 666
Q ss_pred EEEEECCCeEEEEECC------------ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce-EEeec--C
Q 004329 125 IVSSSVDSTLKRWRKG------------KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA-QTFVG--H 188 (760)
Q Consensus 125 l~sgs~dg~v~vwd~~------------~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~-~~~~~--h 188 (760)
+++|+.||+|+.|++. .....+.+|.+.||.+++++... +++++.||+++.|+..... .++.. .
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccc
Confidence 9999999999999431 34457789999999999998754 9999999999999854322 23322 2
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEe---cC-CceEEEee-------cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 189 TDTVRGLSVMPGVGIISASHDCTIRLWA---LT-GQVLMEMV-------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 189 ~~~V~~l~~~~~~~l~s~s~dg~I~iwd---~~-~~~~~~~~-------~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+...++.+-.. ..+-...+...+.++ +. +..+..+. .....+..+.++|.+ ..+++.+|+.|+++|
T Consensus 439 ~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 439 HGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cCCcceEeeccc-hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 233344554422 211112223333333 21 12222221 112457778888988 999999999999999
Q ss_pred --CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 257 --DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 257 --~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.+..+.... |...++++++.|+|. +++++.||.+++|.+....+.
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 666666554 889999999999999 899999999999998765543
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.4e-15 Score=163.64 Aligned_cols=250 Identities=22% Similarity=0.307 Sum_probs=184.1
Q ss_pred CccccCCCceEeEEeccC---CCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeeeEee---CC----CCC
Q 004329 1 MMDIDFKEYQLSSELRGH---EDDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILL---GH----TSF 67 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH---~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~---~h----~~~ 67 (760)
|.+||+...+....|..+ ...|+.+++.++.. +++|+.||.||||+--.....+...+.... ++ .+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence 457888888887777754 46799999875433 999999999999985422111122222111 11 111
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec---CCeEEEEECCCeEEEEECC---
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--- 140 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--- 140 (760)
=.-+.|.... |+|+++|.-..|+|||.+...++..+. +....|+++.-+ ++.++.|..||.|++||.+
T Consensus 1168 ~~v~dWqQ~~-----G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1168 GLVVDWQQQS-----GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred CeeeehhhhC-----CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence 1234555444 367888878999999999887777665 455677888765 6779999999999999875
Q ss_pred --ceeEEeecCCcC--eEEEEEeCCCc--EEEEECCCcEEEEeCCCc-eE---EeecCC--C-ceEEEEEeCCCe-EEEE
Q 004329 141 --KLVEFWEAHNAP--IQTVIRIPSGE--IVSGSSDTTIKLWKGKKC-AQ---TFVGHT--D-TVRGLSVMPGVG-IISA 206 (760)
Q Consensus 141 --~~~~~~~~~~~~--v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~-~~---~~~~h~--~-~V~~l~~~~~~~-l~s~ 206 (760)
..+..++.|... |..+.+.++|. +++|+.+|.|++||++.. .. ....|. + ..+++.+++... +++|
T Consensus 1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeec
Confidence 467788889877 98999888764 999999999999997762 22 222232 3 589999999777 5555
Q ss_pred eCCCeEEEEecCCceEEEeecC-------CCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 207 SHDCTIRLWALTGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 207 s~dg~I~iwd~~~~~~~~~~~h-------~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+. +.|+||++.|+.+..+..+ .+.+.|++|+|.. ++++|+.|.+|.||.
T Consensus 1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 55 9999999999887766543 3467999999999 999999999999997
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=3.9e-15 Score=144.78 Aligned_cols=230 Identities=18% Similarity=0.248 Sum_probs=175.2
Q ss_pred cCCCCEEEEEEc---CCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 17 GHEDDVRGICVC---DNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 17 gH~~~V~~v~~~---~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
.|...-..++|+ .++. ++.|+.-|.|||.|+.+++ ....+.+|...|+.+.+.|...+ ++++++.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----~~~~~~ghG~sINeik~~p~~~q----lvls~SkD 157 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----CSKNYRGHGGSINEIKFHPDRPQ----LVLSASKD 157 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----hccceeccCccchhhhcCCCCCc----EEEEecCC
Confidence 377778888887 2233 8888999999999998766 67788999999999999999876 59999999
Q ss_pred CeEEEEECCCCceEEEE---eCCCccEEEEEec--CCeEEEEECCCeEEEEECCc--------eeE--------------
Q 004329 92 TMVLVWDLGSGEKVQTL---QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK--------LVE-------------- 144 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l---~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~--------~~~-------------- 144 (760)
..|++|++++..++..+ .+|...|.++.|+ +.++++++.|.++++|++.. ...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 99999999999998886 4799999999998 77899999999999998641 000
Q ss_pred --------EeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCce----------------EEeecCCCceEEEEEeC-
Q 004329 145 --------FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCA----------------QTFVGHTDTVRGLSVMP- 199 (760)
Q Consensus 145 --------~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~----------------~~~~~h~~~V~~l~~~~- 199 (760)
+-..|...|-|+.|.. +.+++-|-++.|..|..++.. ..+.-....|+-+.|.-
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred ccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 1123555566665553 336788888999999764321 12222344555555543
Q ss_pred --CCeEEEEeCCCeEEEEecCCceE---EEee--cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 200 --GVGIISASHDCTIRLWALTGQVL---MEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 200 --~~~l~s~s~dg~I~iwd~~~~~~---~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
...++.|...|.|.+||++.... .++. .....|...+|+.++ .|+...+|++|.-||
T Consensus 317 ~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 23389999999999999854322 2222 234688999999999 999999999999998
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=143.80 Aligned_cols=279 Identities=15% Similarity=0.195 Sum_probs=202.5
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccc-eeeeEe-eCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKY-HSSKIL-LGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~-~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+.+.+|.+.|.++.|+.+++ |++|+.|..+++|+++..-.... .++... ..|...|.|++|...+. .+++|+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-----~~~SG~ 124 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-----FLYSGE 124 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-----eEecCC
Confidence 45679999999999999999 99999999999999863211111 223222 34678999999988776 699999
Q ss_pred CCCeEEEEECCCCceEEEEeC--CCccEEEEEec--CCeEEEEECCCeEEEEECCce---e--EEeecCCcCeEEEEEeC
Q 004329 90 MDTMVLVWDLGSGEKVQTLQG--HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKL---V--EFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~--h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~---~--~~~~~~~~~v~~v~~~~ 160 (760)
.+++|...|+++.+.+..+.. ..+.|..+..+ ++.+++.+.+|.|.+||.+.. . ............+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999999988877652 23588888887 788999999999999987522 1 22223455677889999
Q ss_pred CCc--EEEEECCCcEEEEeCCCceEEe------ecC---CCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEee-c
Q 004329 161 SGE--IVSGSSDTTIKLWKGKKCAQTF------VGH---TDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMV-G 227 (760)
Q Consensus 161 ~~~--l~tgs~dg~i~iwd~~~~~~~~------~~h---~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~-~ 227 (760)
... +++.+..+-+.+||.+...+.+ .+- ...-.++.|+|++. |++--....-.+||+-.+.+..++ .
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 755 7788999999999987655432 121 12235678888555 777666666677887554333333 3
Q ss_pred CC-------CcEEEEEEeCCCeEEEEeCCCcEEEEe------C-C-----c-------------eEEEE-ecCCcEEEEE
Q 004329 228 HT-------AIVYSIDSHASGLIVSGSEDRFAKIWK------D-G-----V-------------CVQSI-EHPGCVWDAK 274 (760)
Q Consensus 228 h~-------~~v~~v~~~p~~~l~s~s~Dg~I~iwd------~-~-----~-------------~~~~~-~~~~~v~~v~ 274 (760)
|. ..+.+++|..+..+++|+.+-.|++|. . | . .+..+ .|..-+..+.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 33 245677787776899999999999997 1 1 0 11122 2777889999
Q ss_pred EccCCc-EEEEEcCCcEEEEeCC
Q 004329 275 FLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 275 ~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
|+|... +++.+-...+++|.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 999877 6777779999999753
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=9.2e-15 Score=145.33 Aligned_cols=160 Identities=26% Similarity=0.415 Sum_probs=129.7
Q ss_pred eccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCC--ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 15 LRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDK--RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+.||+++|..++|+|-.. |||||.|.+|.||++..+.. ....+...+.+|...|.-++|+|.... .|++++.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N----VLlsag~ 152 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN----VLLSAGS 152 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh----hHhhccC
Confidence 469999999999997554 99999999999999864432 223457789999999999999998875 5999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCc-CeEEEEEeCCCcEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNA-PIQTVIRIPSGEIV 165 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~-~v~~v~~~~~~~l~ 165 (760)
|.+|.+||+.+|+.+.++. |...|.+++|+ +.++++.+.|+.|+|||.+ +.+..-.+|.+ .-..+.|..++.++
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999888888 99999999997 7779999999999999975 45555556654 23445677777766
Q ss_pred EEE----CCCcEEEEeCC
Q 004329 166 SGS----SDTTIKLWKGK 179 (760)
Q Consensus 166 tgs----~dg~i~iwd~~ 179 (760)
+.+ .+..+-+||..
T Consensus 232 tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPN 249 (472)
T ss_pred eeccccccccceeccCcc
Confidence 543 46678888744
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.6e-14 Score=133.38 Aligned_cols=221 Identities=18% Similarity=0.206 Sum_probs=148.7
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----------ceEEEEeCCCccEEEEEecCCeEEEEECCCeEEE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----------EKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKR 136 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~v 136 (760)
.|.+-+|+|... ++++|..+|.|.+..+.+- ..+...++|.+++..+.|.+..+++|+. |.|+-
T Consensus 12 tvf~qa~sp~~~-----~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-----YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHhhCCcce-----EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEE
Confidence 345567788877 7999999999999988531 2345567899999999999888888775 99998
Q ss_pred EECCceeE--------Ee--ecC-----CcCeEEEEEeCC-CcEEEEECCCcEEEEeC--CCceEEeecCCCceEEEEEe
Q 004329 137 WRKGKLVE--------FW--EAH-----NAPIQTVIRIPS-GEIVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 137 wd~~~~~~--------~~--~~~-----~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~ 198 (760)
|...+... .. ..| -..|.++...|. +.+++++.|+.++.||+ ++..+.+++|++.|.++.-.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 85432111 10 011 234666766664 34666667888888884 45666777888888877766
Q ss_pred CCCe-EEEEeCCCeEEEEec-CCceEEEeecC----------CCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEE
Q 004329 199 PGVG-IISASHDCTIRLWAL-TGQVLMEMVGH----------TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI 264 (760)
Q Consensus 199 ~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h----------~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~ 264 (760)
.... +++|++||++|+||. +++++..+... ...|-+++.+.+ .+++|+ ...+.+|+ ..++.+.+
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCceEEE
Confidence 5555 788888888888885 45566666421 224556655544 555544 34477787 66777777
Q ss_pred ecCCcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 265 EHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 265 ~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
..++++..+.|..| .+++++....|.-|.+.
T Consensus 244 pipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 244 PIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ecccceeEeeeecc-eEEEeccccceeeeeec
Confidence 78888877777543 36666666677777664
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.3e-15 Score=152.28 Aligned_cols=235 Identities=17% Similarity=0.282 Sum_probs=179.4
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CC-eEEEEECC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NE-DIVSSSVD 131 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~d 131 (760)
..+...+.+|++.|.|+...|.+. +|++|+.||+|++|.+.+|++++++. ..+.|.|++|+ .+ .++..+..
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~-----wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGE-----WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcc-----eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 345667899999999999999887 69999999999999999999999887 45689999997 22 24444444
Q ss_pred CeEEEEEC---------------------------------C------ceeEEeecCCcCeEEEEEeCCCc-EEEEEC--
Q 004329 132 STLKRWRK---------------------------------G------KLVEFWEAHNAPIQTVIRIPSGE-IVSGSS-- 169 (760)
Q Consensus 132 g~v~vwd~---------------------------------~------~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~-- 169 (760)
..+.+-+. . ..++..-.|...|..+.|+..|. |++.+.
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 44443321 0 11233445778899999999988 555443
Q ss_pred -CCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEE
Q 004329 170 -DTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIV 244 (760)
Q Consensus 170 -dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~ 244 (760)
...|.++++.+ .+..|....+.|.++.|+|....+..+....|++||+. ...+..+......|.+++++|.| .|+
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 35677887543 33456666788999999997765555556789999974 55566666777899999999999 999
Q ss_pred EEeCCCcEEEEe---CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 245 SGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 245 s~s~Dg~I~iwd---~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
.|+.|+.+..+| ..++.+++. |...+++|+|++.-. +++|+.||.+.||.-
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999 555677776 777999999999888 677888899999863
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=3.1e-14 Score=155.71 Aligned_cols=251 Identities=16% Similarity=0.237 Sum_probs=186.4
Q ss_pred ccccCCCc-eEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCc-cceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEY-QLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKR-KYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~-~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.|++..- .....+. -...|+|++|+|... ++.|+.+|.|.+||+..+... ..........|..+|..+.|..+.
T Consensus 225 ~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 225 LVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 56776543 3434443 467899999998766 899999999999999866542 333344556799999999998865
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCce-EEE-----Ee------CCCccEEEEEec---CCeEEEEECCCeEEEE-E--C
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEK-VQT-----LQ------GHKLQVTGVTLD---NEDIVSSSVDSTLKRW-R--K 139 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~-----l~------~h~~~V~~l~~~---~~~l~sgs~dg~v~vw-d--~ 139 (760)
.. .-+++++.||.|..|+++.-.. ... .. .....++++.|. +..++.|+.+|.|..- . .
T Consensus 304 ~~---~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 304 HN---TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred CC---CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 42 2489999999999998764322 111 11 123467788885 6679999999999873 2 2
Q ss_pred C-------ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCe--EEEE
Q 004329 140 G-------KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVG--IISA 206 (760)
Q Consensus 140 ~-------~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~--l~s~ 206 (760)
. +....+..|.++|.++.++|=+. ++..+.|-++++|... .++..+..+.+.|++++|+|... |+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 1 22445667899999999999665 4444449999999844 45666777888899999999654 8899
Q ss_pred eCCCeEEEEecC---CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 207 SHDCTIRLWALT---GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 207 s~dg~I~iwd~~---~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
..||.|.+||+. ..++.+...+....+.+.|++.| .+++|...|++++|+
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 999999999973 34555555557777888899988 999999999999998
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=8.8e-15 Score=139.82 Aligned_cols=205 Identities=21% Similarity=0.272 Sum_probs=158.8
Q ss_pred ceEeEEec-cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccce-eeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 9 YQLSSELR-GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYH-SSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 9 ~~l~~~l~-gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
++++..|. .|-+.|.|+.|.|++. +++-. |..|.+|+++.+...... ....-.+|....++-+|+|..+ +.-
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd----gnq 186 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD----GNQ 186 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc----cce
Confidence 55666776 5667999999999988 66655 899999999866532111 1111233567788889998543 235
Q ss_pred EEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEecCCe---EEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEE
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLDNED---IVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~~~~---l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~ 158 (760)
+....|+++..||+++.++...+. .|...|..+.|+++. +++|+.||.|++||.+ .++..+.+|...||++.|
T Consensus 187 v~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 187 VATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 666788999999999887766654 788999999998443 9999999999999986 577788899999999999
Q ss_pred eCCCc--EEEEECCCcEEEEeCCC-------------------------------ceEEeecCCCceEEEEEeC-CCe-E
Q 004329 159 IPSGE--IVSGSSDTTIKLWKGKK-------------------------------CAQTFVGHTDTVRGLSVMP-GVG-I 203 (760)
Q Consensus 159 ~~~~~--l~tgs~dg~i~iwd~~~-------------------------------~~~~~~~h~~~V~~l~~~~-~~~-l 203 (760)
+|... +++|+.|..|.+|.... .+.++..|.+.|.+++|+. +-. |
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 99643 78999999999984110 1236678999999999998 444 8
Q ss_pred EEEeCCCeEEEEecC
Q 004329 204 ISASHDCTIRLWALT 218 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~ 218 (760)
++-+.||++.|=.+.
T Consensus 347 ASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVP 361 (370)
T ss_pred EEeccCceEEeecCC
Confidence 999999999887654
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.6e-15 Score=143.67 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=169.9
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCC-C-e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC-CCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDN-V-G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT-SFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~-~-~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~ 77 (760)
..||..+.+.+..+++|...++.+.|..+ + . +.+|+.||+||+||+++... ........+. .+..|++..-..
T Consensus 53 ~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 53 RLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---SARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred EEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---hhheeccCCCCCcceEeeccCcC
Confidence 45677788999999999999999999864 2 2 99999999999999986542 1223334444 455666554333
Q ss_pred CCCCCcEEEEEe----CCCeEEEEECCCCce-EEEE-eCCCccEEEEEec---CCeEEEEECCCeEEEEECCc-----ee
Q 004329 78 EEFPEGGLVSGG----MDTMVLVWDLGSGEK-VQTL-QGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK-----LV 143 (760)
Q Consensus 78 ~~~~~~~l~sgs----~dg~I~vwd~~~~~~-~~~l-~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~-----~~ 143 (760)
. .+++|. .+-.+.+||++..+. +..+ ..|...|+++.|+ ++.+++||.||.|.++|+.+ .+
T Consensus 130 ~-----ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 130 N-----IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred C-----eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence 3 466664 367799999987765 5444 5799999999997 66799999999999999853 22
Q ss_pred EEeecCCcCeEEEEEeCCC--cEEEEECCCcEEEEeCCCce--EEeec------------CCCceEEEEEeCCC--eEEE
Q 004329 144 EFWEAHNAPIQTVIRIPSG--EIVSGSSDTTIKLWKGKKCA--QTFVG------------HTDTVRGLSVMPGV--GIIS 205 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~~--~l~tgs~dg~i~iwd~~~~~--~~~~~------------h~~~V~~l~~~~~~--~l~s 205 (760)
...-.|...|.++.|+.++ ++.+-+..++..+|+..... ..+.. .-+.+-.. .+|+. .++.
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l 283 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCAL 283 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEE
Confidence 3333567789999999998 68899999999999854321 11110 00111111 12322 2443
Q ss_pred EeC-CCeEEEEec----C---CceEEEeec-CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 206 ASH-DCTIRLWAL----T---GQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 206 ~s~-dg~I~iwd~----~---~~~~~~~~~-h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
++. -+...++-+ . .+.+..+.+ |..-|+++.|...+ .+.+||+||.+.+|.
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 333 444444432 1 233444555 67788888888777 999999999999998
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-13 Score=128.40 Aligned_cols=230 Identities=18% Similarity=0.249 Sum_probs=168.5
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCC-----CccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSD-----KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~-----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
.|.+-+++|.++ |+.|+.+|.|-+..+.+-. .+........++|.++|+.++|..+ +|++|+ ||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-------~Lls~g-dG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-------FLLSGG-DGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-------heeecc-CceE
Confidence 455667889988 9999999999999986321 1122233445889999999999832 366665 4999
Q ss_pred EEEECCCCce------EEEEe--CC-----CccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEE
Q 004329 95 LVWDLGSGEK------VQTLQ--GH-----KLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 95 ~vwd~~~~~~------~~~l~--~h-----~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~ 157 (760)
+-|....... ....+ -| -..|.++..+ .+.++.++.|+.++-||. ++..+.+++|.+-|.++.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 9998754321 11111 12 2356777776 566888889999999987 478889999999999998
Q ss_pred E-eCCCcEEEEECCCcEEEEeCCC--ceEEeecCC----------CceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEE
Q 004329 158 R-IPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHT----------DTVRGLSVMPGVGIISASHDCTIRLWALTGQVLME 224 (760)
Q Consensus 158 ~-~~~~~l~tgs~dg~i~iwd~~~--~~~~~~~h~----------~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 224 (760)
- +.++++++|+.||++|+||.++ +.+.+.... ..|-+++.+ ...+.|+....+.+|.++......
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccCCCceE
Confidence 8 5678899999999999999654 555666422 224444443 346677778899999998776666
Q ss_pred eecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceE
Q 004329 225 MVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCV 261 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~ 261 (760)
...-...+..+.|..+ .++++++.+.|.-|. .|...
T Consensus 242 vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~ 278 (325)
T KOG0649|consen 242 VFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQ 278 (325)
T ss_pred EEecccceeEeeeecc-eEEEeccccceeeeeeccEEE
Confidence 6678889999999877 788888888899888 44443
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-13 Score=153.14 Aligned_cols=247 Identities=16% Similarity=0.199 Sum_probs=171.6
Q ss_pred ccCCCceEeEEeccCCCCEEEEEEcCCC-e-EEEEECCCeEEEEeCCCCCC--ccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 4 IDFKEYQLSSELRGHEDDVRGICVCDNV-G-IATSSRDRTVRFWSLDPSDK--RKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~v~~~~~~-~-l~tgs~Dg~i~iWd~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|++ .+.++..|..|+..|..++.+++. . ++|||.||+|++|+...-.. .......++....+.+.++.+.+.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~- 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD- 1111 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-
Confidence 553 478999999999999999988665 4 99999999999999863221 23344455555688899999999888
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCc-------eEEEEeCC-CccEEEE-Eec---CC-eEEEEECCCeEEEEECCceeEE-
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGE-------KVQTLQGH-KLQVTGV-TLD---NE-DIVSSSVDSTLKRWRKGKLVEF- 145 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~-------~~~~l~~h-~~~V~~l-~~~---~~-~l~sgs~dg~v~vwd~~~~~~~- 145 (760)
.++.++.||.|++.+++..+ +.+....+ .+.+.++ ++. .. .++.+...+.+..||++.....
T Consensus 1112 ----~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1112 ----QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred ----eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 58999999999999987521 11112222 2334333 443 33 5888889999999998743322
Q ss_pred ---eecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEee-cCCCceEEEEEeC--C--CeEEE-Ee-CCCeE
Q 004329 146 ---WEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFV-GHTDTVRGLSVMP--G--VGIIS-AS-HDCTI 212 (760)
Q Consensus 146 ---~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~-~h~~~V~~l~~~~--~--~~l~s-~s-~dg~I 212 (760)
.....+.|++++.+|.+. ++.|+..|.+.+||++- ++..+. ++..+++.++.+| . ...++ ++ ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 233467899999999877 88999999999999664 343332 3557888888887 2 33444 44 57789
Q ss_pred EEEecC-CceEEEeecC--------------------CCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 213 RLWALT-GQVLMEMVGH--------------------TAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 213 ~iwd~~-~~~~~~~~~h--------------------~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
.+|++. |.+...+... ...+.+.-..+++.+.+|+.|..||.||
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 999974 3332222211 1123333333445999999999999999
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9e-15 Score=149.17 Aligned_cols=288 Identities=19% Similarity=0.238 Sum_probs=215.6
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
..+.+...|.+|.+.|..|.|...|. |++||.|..|.+||..++.. ......+|...|..-.|.|.... ..+
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d---~ti 202 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGD---RTI 202 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCC---cCc
Confidence 45667788999999999999999998 99999999999999986652 33445688888988899887653 359
Q ss_pred EEEeCCCeEEEEECCCC-ce--EEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC-----ceeEEeecCCc---
Q 004329 86 VSGGMDTMVLVWDLGSG-EK--VQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNA--- 151 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~-~~--~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~--- 151 (760)
++++.||.+++=.+... .+ ...+..|.++|.-++.. ...|.+++.|+.+.-.|++ .....-..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 99999999999876433 22 34466799999999886 4559999999999998865 12222223333
Q ss_pred CeEEEEEeCCCc--EEEEECCCcEEEEeCCCc--------eEEeec------CCCceEEEEEeCC-CeEEEEeCCCeEEE
Q 004329 152 PIQTVIRIPSGE--IVSGSSDTTIKLWKGKKC--------AQTFVG------HTDTVRGLSVMPG-VGIISASHDCTIRL 214 (760)
Q Consensus 152 ~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~--------~~~~~~------h~~~V~~l~~~~~-~~l~s~s~dg~I~i 214 (760)
...+++..|.+. +++|+.|..+++||.+.. +..+.. ..-.|++++++.+ +.++++-+|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 467788888654 889999999999995532 122222 2346899999964 44999999999999
Q ss_pred Eec---CC----------ceEEE-eecCCC--cEEEEEEeC-CC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEE
Q 004329 215 WAL---TG----------QVLME-MVGHTA--IVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 273 (760)
Q Consensus 215 wd~---~~----------~~~~~-~~~h~~--~v~~v~~~p-~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v 273 (760)
+.- .| ..+.. ++||.. .|.++-|-. .. ++++|+.-|.|.||+ .++.++.+. ...-|+|+
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 963 12 22233 678864 577777654 44 999999999999999 666666665 22388999
Q ss_pred EEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 274 KFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 274 ~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.-+|--. |+++|-|..|+||...+.+.+
T Consensus 443 EpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred CCCCCCchhhccCCccceeeecCCccccc
Confidence 9888777 778888999999998555443
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=7.1e-14 Score=143.85 Aligned_cols=222 Identities=20% Similarity=0.266 Sum_probs=159.4
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEE-E-----EEec----CCeEEEEECCC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT-G-----VTLD----NEDIVSSSVDS 132 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~-~-----l~~~----~~~l~sgs~dg 132 (760)
.|...|.|+.|+.... ++..+.|..+.+|.--+......+.-...-+. . .... .+.++.++.||
T Consensus 12 r~~e~vc~v~w~~~ee------i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE------IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccce------EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence 4667778999988776 66666777776665433332222221111111 1 1111 33499999999
Q ss_pred eEEEEEC-CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce-EEeecCCCceEEEEEeCCCeEEEEeCC
Q 004329 133 TLKRWRK-GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA-QTFVGHTDTVRGLSVMPGVGIISASHD 209 (760)
Q Consensus 133 ~v~vwd~-~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~-~~~~~h~~~V~~l~~~~~~~l~s~s~d 209 (760)
.+.+.+. ++.......|.+.+.+-.|+|+|. +++++.||.|++|.-.... .++.....+|+|++|.|+..-+.-+..
T Consensus 86 kf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 86 RFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred eEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 9998854 567777889999999999999998 9999999999999844433 345567789999999997763333445
Q ss_pred CeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEE-ecCCcEEEEEEccCCcEEEEE
Q 004329 210 CTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSI-EHPGCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 210 g~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~-~~~~~v~~v~~~~~g~lvt~~ 285 (760)
+.+.|=.+. ...+..+..|.+-|.++.|++.. .+++||+|-..+||| .|..+..- .|..+|++++|.|+..++.++
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S 245 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS 245 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeee
Confidence 566665553 33456788999999999999998 999999999999999 55554443 488899999999994455544
Q ss_pred cCCcEE
Q 004329 286 SDGVTR 291 (760)
Q Consensus 286 ~dg~I~ 291 (760)
-.+.|
T Consensus 246 -~nt~R 250 (737)
T KOG1524|consen 246 -YNTAR 250 (737)
T ss_pred -eeeee
Confidence 33444
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.8e-13 Score=131.68 Aligned_cols=230 Identities=19% Similarity=0.188 Sum_probs=180.2
Q ss_pred eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc---eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEE
Q 004329 62 LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE---KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKR 136 (760)
Q Consensus 62 ~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~v 136 (760)
.....+|+|.+|+++.. .++.+.....|.||...... ...+++.|...|++++|. .++|++|+.|...++
T Consensus 7 ~~~~~pitchAwn~drt-----~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRT-----QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eeccCceeeeeecCCCc-----eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 33467899999999998 58899999999999987654 678889999999999998 667999999999999
Q ss_pred EECC-----ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC------ceEEeecCCCceEEEEEeCCCe-E
Q 004329 137 WRKG-----KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK------CAQTFVGHTDTVRGLSVMPGVG-I 203 (760)
Q Consensus 137 wd~~-----~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~------~~~~~~~h~~~V~~l~~~~~~~-l 203 (760)
|... ++...+..++...+++.|+|.+. |++|+....|.+|-... ..+.-+.+...|.++.|+|++- +
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 9762 56667778899999999999865 89999999999885332 1223345778899999999887 8
Q ss_pred EEEeCCCeEEEEec-----C--------------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCc--e
Q 004329 204 ISASHDCTIRLWAL-----T--------------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV--C 260 (760)
Q Consensus 204 ~s~s~dg~I~iwd~-----~--------------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~--~ 260 (760)
++|+.|+..|+++. + |+.+.++....+.+..+.|+|+| .|+-.+.|.++.+-| .+. .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 89999999999973 1 22334444567899999999999 999999999999999 222 3
Q ss_pred EEEEecC-CcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 261 VQSIEHP-GCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 261 ~~~~~~~-~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
++..... -+..++.|-.+..++.++.|..=.+|...
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEEEec
Confidence 4444433 47788888777777777777544444443
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=8e-15 Score=157.89 Aligned_cols=269 Identities=19% Similarity=0.312 Sum_probs=197.7
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEE
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLK 135 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~ 135 (760)
.+.+.+|.+.|+|+.|...+. ++++|+.|..++||..+++.+.....||.+.++.++.+ +-.++++|.|..|+
T Consensus 183 ikrLlgH~naVyca~fDrtg~-----~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-----YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-----eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 445678999999999998887 79999999999999999999999999999999999997 33489999999999
Q ss_pred EEEC--CceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEee------cCCCceEEEEEeCCCe-EEEE
Q 004329 136 RWRK--GKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGVG-IISA 206 (760)
Q Consensus 136 vwd~--~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~------~h~~~V~~l~~~~~~~-l~s~ 206 (760)
+|.. +.++..+.+|++.|++++|+|-. +.+.||++++||.+-....+. ...+-+.++.+...+. ++++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9976 57888899999999999999955 778999999999762222221 1234566666665444 9999
Q ss_pred eCCCeEEEEecCCceEEEeecCCCcEEEEEEeCC--CeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-
Q 004329 207 SHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS--GLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD- 280 (760)
Q Consensus 207 s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~--~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~- 280 (760)
+.|+.-..|.+.... .+...+.-+..+.+ .+.+++-.+..+++|+ .+...+... |...+..+.++|-+.
T Consensus 335 s~d~ea~n~e~~~l~-----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA-----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred cCCcccccchhhHhh-----hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 999999988753211 11111111222212 2667777888899999 666666654 888999999999776
Q ss_pred -EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEE
Q 004329 281 -IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAY 359 (760)
Q Consensus 281 -lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~ 359 (760)
..+++.||...|||+-.|..+. .+..+..+...-..+.||+.+++. .+-+.+|
T Consensus 410 i~msag~dgst~iwdi~eg~pik-------------------------~y~~gh~kl~d~kFSqdgts~~ls-d~hgql~ 463 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIK-------------------------HYFIGHGKLVDGKFSQDGTSIALS-DDHGQLY 463 (1113)
T ss_pred hhhhccCCCceEeeecccCCcce-------------------------eeecccceeeccccCCCCceEecC-CCCCceE
Confidence 5788899999999998876443 333333333444455666555443 3446667
Q ss_pred EEeccc
Q 004329 360 SWDMKE 365 (760)
Q Consensus 360 ~w~~~~ 365 (760)
+.....
T Consensus 464 i~g~gq 469 (1113)
T KOG0644|consen 464 ILGTGQ 469 (1113)
T ss_pred EeccCC
Confidence 666444
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.58 E-value=1.2e-13 Score=137.58 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=151.4
Q ss_pred EEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC---------ceeEEeecCCcCeEEEEEeCCCc--EEEEECCCc
Q 004329 107 TLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG---------KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTT 172 (760)
Q Consensus 107 ~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~---------~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~ 172 (760)
.+.+|.++|..++|+ +..+++||.|.+|.+|++. +++..+.+|...|-.+.|+|.-. +++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 356899999999996 5559999999999999642 66788999999999999999644 889999999
Q ss_pred EEEEeCCCc--eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCC-cEEEEEEeCCCeEEEEe
Q 004329 173 IKLWKGKKC--AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGS 247 (760)
Q Consensus 173 i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~-~v~~v~~~p~~~l~s~s 247 (760)
|.+||.++. ..++. |.+-|.+++|+.++. +++++.|..|||||. +++.+..-.+|.+ .-..+.|..++.+++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 999996654 33444 999999999999766 999999999999996 5777777777875 34455667777555544
Q ss_pred ----CCCcEEEEe-----CCceEEEEecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCe
Q 004329 248 ----EDRFAKIWK-----DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 248 ----~Dg~I~iwd-----~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~ 299 (760)
.++.+-+|| ..-..+.+...+.|.---|.+|.. +++|-.|+.||.|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 578899999 223344555566666666777777 4666679999999998776
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.8e-13 Score=131.75 Aligned_cols=225 Identities=15% Similarity=0.199 Sum_probs=173.6
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
-..+|+|.+|++|+. ++.+.....|.||.....+ .+...+++..|...|+++.|.|..+ .|++|+.|..-++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~sn-----rIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPKSN-----RIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC--CceeceehhhhCcceeEEeecCCCC-----ceeEccCCCCccc
Confidence 457899999999998 9999999999999987443 4778899999999999999999987 4999999999999
Q ss_pred EEC-CCC--ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC------ceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 97 WDL-GSG--EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG------KLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 97 wd~-~~~--~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~------~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
|.. +.+ ++...+..++...+++.|+ ++.|++||.-..|.||-.+ -..+.-+.+...|.++.|+|++- +
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 998 434 4455667899999999998 6679999999999998443 22334456788899999999988 6
Q ss_pred EEEECCCcEEEEeC-----C-C--------------ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc--e
Q 004329 165 VSGSSDTTIKLWKG-----K-K--------------CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ--V 221 (760)
Q Consensus 165 ~tgs~dg~i~iwd~-----~-~--------------~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~--~ 221 (760)
++||.|+..|+|.. . + .+..+....+.|..+.|+|.+. ++-.+.|..+.+-|..+. .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 78999999999951 1 0 1123334567899999999555 999999999999997554 3
Q ss_pred EEEeecCCCcEEEEEEeCCCeEEEEeCC
Q 004329 222 LMEMVGHTAIVYSIDSHASGLIVSGSED 249 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~~~l~s~s~D 249 (760)
+.......-+..++.|-.+..++.++.|
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCC
Confidence 4444333355666666544444444444
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=132.41 Aligned_cols=224 Identities=17% Similarity=0.288 Sum_probs=165.3
Q ss_pred cCCCCEEEEEEcCCCe------EEEEECCCeEEEEeCCCCCCccceeeeEe-----eCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 17 GHEDDVRGICVCDNVG------IATSSRDRTVRFWSLDPSDKRKYHSSKIL-----LGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~------l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
.|.-+++.+.|.|+.. |||++ ..+|+|.+...+ ....+...+ ..+..++++..|+.-... ++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee-~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~----~i 166 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEE-SRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN----LI 166 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcC-CceehhhhhccCcccccCCcccccccccCCcc----ee
Confidence 6889999999998863 44443 389999987432 222222222 335678999999887765 69
Q ss_pred EEEeCCCeEEEEECCCCc---eEEEEeCCCccEEEEEecC---CeEEEEECCCeEEEEECCceeE---Eeec--CCcCeE
Q 004329 86 VSGGMDTMVLVWDLGSGE---KVQTLQGHKLQVTGVTLDN---EDIVSSSVDSTLKRWRKGKLVE---FWEA--HNAPIQ 154 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~---~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~v~vwd~~~~~~---~~~~--~~~~v~ 154 (760)
.+++-|-+..|||++++. ....+-.|..+|..++|.. +.|++++.||.+|++|++...+ .++. ...+..
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999999873 3556778999999999973 3499999999999999873322 2222 246777
Q ss_pred EEEEeCCCc--EEE-EECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCC--eEEEEeCCCeEEEEecCCce-----
Q 004329 155 TVIRIPSGE--IVS-GSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGV--GIISASHDCTIRLWALTGQV----- 221 (760)
Q Consensus 155 ~v~~~~~~~--l~t-gs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~I~iwd~~~~~----- 221 (760)
.++|+++.. +++ +-....|.+.|++ .++..+.+|...|++++|.|.. .+++|+.|..+.+||+....
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 888888654 554 3445678889966 4566889999999999999954 49999999999999975322
Q ss_pred --EEEeecCCCcEEEEEEeCCC--eEEEEeC
Q 004329 222 --LMEMVGHTAIVYSIDSHASG--LIVSGSE 248 (760)
Q Consensus 222 --~~~~~~h~~~v~~v~~~p~~--~l~s~s~ 248 (760)
+..+ ...+.|..+.|++.. .++.+..
T Consensus 327 dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 327 DPILAY-TAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred Cchhhh-hccceeeeeeecccCCCEEEEEec
Confidence 2222 256789999999765 6666554
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.4e-12 Score=140.99 Aligned_cols=275 Identities=15% Similarity=0.202 Sum_probs=195.0
Q ss_pred cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 17 GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
.|.-.++|++++|+++ +++|..||.|.+|.--..+ ........++=|...|++++|++++. +|++||..|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~~~t~t~lHWH~~~V~~L~fS~~G~-----~LlSGG~E~VLv 276 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DDSETCTLLHWHHDEVNSLSFSSDGA-----YLLSGGREGVLV 276 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc-cccccceEEEecccccceeEEecCCc-----eEeecccceEEE
Confidence 4777799999999999 9999999999999754211 22334566777999999999999998 799999999999
Q ss_pred EEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-----ceeEEee--------cCCcCeEEEEEeC
Q 004329 96 VWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-----KLVEFWE--------AHNAPIQTVIRIP 160 (760)
Q Consensus 96 vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-----~~~~~~~--------~~~~~v~~v~~~~ 160 (760)
+|.+.+++ .+-++.-.++|..+.++ ++.......|..|.+.... ..+..+. ...+-.+.+++.|
T Consensus 277 ~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 277 LWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred EEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 99999988 45566678899999887 5567788889999988542 1111111 1234456778888
Q ss_pred C-CcEEEEECCCcEEEEeCCC--ceEEee-----------cCCCceEEEEEeCCCe-EEEEe--------CCC--eEEEE
Q 004329 161 S-GEIVSGSSDTTIKLWKGKK--CAQTFV-----------GHTDTVRGLSVMPGVG-IISAS--------HDC--TIRLW 215 (760)
Q Consensus 161 ~-~~l~tgs~dg~i~iwd~~~--~~~~~~-----------~h~~~V~~l~~~~~~~-l~s~s--------~dg--~I~iw 215 (760)
. +.++-.+..|.|.+||.-+ .+..+. .+...++.++.+-.+. +++.- .|| .+++|
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 4 5588889999999999443 222221 1223455555555444 44442 233 47888
Q ss_pred ecCCc----eEEE--eecCCCcEEEEEEeCCC---eEEEEeCCCcEEEEe-C-------Cc---eEEEEe--cCCcEEEE
Q 004329 216 ALTGQ----VLME--MVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-D-------GV---CVQSIE--HPGCVWDA 273 (760)
Q Consensus 216 d~~~~----~~~~--~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I~iwd-~-------~~---~~~~~~--~~~~v~~v 273 (760)
-..+. .+.+ ...|...+...++.+.. ..++++.||.++||- + .. +...+. |..++++.
T Consensus 436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~ 515 (792)
T KOG1963|consen 436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL 515 (792)
T ss_pred EEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccch
Confidence 75432 2222 23677766666655432 899999999999995 0 10 111122 67799999
Q ss_pred EEccCCcEEEEEcCCcEEEEeCCCC
Q 004329 274 KFLENGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 274 ~~~~~g~lvt~~~dg~I~vw~~~~~ 298 (760)
+|+.||.+++.+.|+.|.+||..+.
T Consensus 516 ~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 516 CFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred hhcCCCcEEEEecCCEEEEecCCCh
Confidence 9999999999999999999999983
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=4e-12 Score=139.24 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=197.0
Q ss_pred eccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 15 LRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
+.|-...-..-.|++|++.+-+..+..|.||...++. +...+.+|..++..+.+.|.... ..++++++.||.|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~-----~i~~l~~~~a~l~s~~~~~~~~~--~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGE-----CITSLEDHTAPLTSVIVLPSSEN--ANYLIVCSLDGTI 84 (792)
T ss_pred eccccceecccccccCCcEEEEeeCCEEEEEecchHh-----hhhhcccccCccceeeecCCCcc--ceEEEEEecCccE
Confidence 4343333333468899996677778899999999887 67789999999999999988763 2368899999999
Q ss_pred EEEECCCCceEEEEeCCCccEEEE--------------------------------------------------------
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGV-------------------------------------------------------- 118 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l-------------------------------------------------------- 118 (760)
++||...+.+++++..+-. +..+
T Consensus 85 ~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~ 163 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEP 163 (792)
T ss_pred EEecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCC
Confidence 9999998887776642211 1110
Q ss_pred ---Eec-CCeEEEEECCCeEEEEECCceeEEe------ecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe-CC-----Cc
Q 004329 119 ---TLD-NEDIVSSSVDSTLKRWRKGKLVEFW------EAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK-GK-----KC 181 (760)
Q Consensus 119 ---~~~-~~~l~sgs~dg~v~vwd~~~~~~~~------~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd-~~-----~~ 181 (760)
.++ .+.+.....+..+.+|...+..... ..|...+++.+++|+++ +++|..||.|.+|. .+ ..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 000 1111112222223344332211111 23556688999999988 67888899999996 22 23
Q ss_pred eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C
Q 004329 182 AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D 257 (760)
Q Consensus 182 ~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~ 257 (760)
.+.+.-|.+.|.++.|++++. +++|+..|.+.+|.+.....+-+..-.++|..+.++|++ ..+...+|..|.+-. +
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 346677899999999999665 999999999999997655555556677899999999999 777788899999887 2
Q ss_pred CceEEEEec------------CCcEEEEEEcc-CCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 258 GVCVQSIEH------------PGCVWDAKFLE-NGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 258 ~~~~~~~~~------------~~~v~~v~~~~-~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
-....++.+ .+-.+.++++| .+.++..+..|.|.+||+.+.+.++.+.
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 222222221 23457788888 4448888889999999998888776555
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.4e-12 Score=130.61 Aligned_cols=244 Identities=20% Similarity=0.300 Sum_probs=172.9
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCC------CC-----CccceeeeEeeCCCCCeEEEEEeC
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDP------SD-----KRKYHSSKILLGHTSFVGPLAWIS 75 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~------~~-----~~~~~~~~~~~~h~~~V~~l~~~~ 75 (760)
+-+....|..|...|++|.|+|+|. |+||+.+|.|.+|.... .. ...|...+.+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 3467788999999999999999999 99999999999998761 11 234667778899999999999999
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--c---eeE--Ee
Q 004329 76 PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--K---LVE--FW 146 (760)
Q Consensus 76 ~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~---~~~--~~ 146 (760)
++. ++++++.|..+++||+..|.....+..|...|..++|+ +.++++-+.|...+.+... . ... .+
T Consensus 134 d~~-----~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m 208 (434)
T KOG1009|consen 134 DSN-----FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIM 208 (434)
T ss_pred CCc-----eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEe
Confidence 998 69999999999999999999999999999999999998 6678888888765555322 0 000 00
Q ss_pred e--------------cCC----cCeEEEEEeCCCcE-EEEEC----CC-----cEEEEe---CCCceEEeecCCCceEEE
Q 004329 147 E--------------AHN----APIQTVIRIPSGEI-VSGSS----DT-----TIKLWK---GKKCAQTFVGHTDTVRGL 195 (760)
Q Consensus 147 ~--------------~~~----~~v~~v~~~~~~~l-~tgs~----dg-----~i~iwd---~~~~~~~~~~h~~~V~~l 195 (760)
. -|. .-...++|+|+|.+ ++.+. ++ +.++|+ +..+...+.....++..+
T Consensus 209 ~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lav 288 (434)
T KOG1009|consen 209 PAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAV 288 (434)
T ss_pred eecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEE
Confidence 0 011 12345677888873 33221 22 334554 333443444444444444
Q ss_pred EEeC------------------CCeEEEEeCCCeEEEEecCC-ceEEEee-cCCCcEEEEEEeCCC-eEEEEeCCCcEEE
Q 004329 196 SVMP------------------GVGIISASHDCTIRLWALTG-QVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKI 254 (760)
Q Consensus 196 ~~~~------------------~~~l~s~s~dg~I~iwd~~~-~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s~Dg~I~i 254 (760)
.++| -+.++.......+.+||.+. .++.... -|-..++.++|+++| .++..|.||...+
T Consensus 289 r~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 289 RFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 4444 12233344455799999643 3333332 488999999999999 9999999998766
Q ss_pred Ee
Q 004329 255 WK 256 (760)
Q Consensus 255 wd 256 (760)
--
T Consensus 369 vt 370 (434)
T KOG1009|consen 369 VT 370 (434)
T ss_pred EE
Confidence 54
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.50 E-value=4.5e-13 Score=126.83 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=172.1
Q ss_pred ccccCCCceEeEEec-cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC-
Q 004329 2 MDIDFKEYQLSSELR-GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE- 79 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~-gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~- 79 (760)
..|++.+..-...++ .|...|+.+...|++.+.|-++|+.+.+|++.-+. ....|.-.++++.|++..-.
T Consensus 38 ~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~--------~i~i~Si~~nslgFCrfSl~~ 109 (323)
T KOG0322|consen 38 KMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA--------FISIHSIVVNSLGFCRFSLVK 109 (323)
T ss_pred EEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcc--------eEEEeeeeccccccccceecc
Confidence 568888887778888 57889999999999889999999999999998432 22334455566666553210
Q ss_pred ---CCCcEEEEEeCCC-eEEEEECCCCceEEEEe----CCCccEEEEEec---CCe--EEEEECCCeEEEEECCce----
Q 004329 80 ---FPEGGLVSGGMDT-MVLVWDLGSGEKVQTLQ----GHKLQVTGVTLD---NED--IVSSSVDSTLKRWRKGKL---- 142 (760)
Q Consensus 80 ---~~~~~l~sgs~dg-~I~vwd~~~~~~~~~l~----~h~~~V~~l~~~---~~~--l~sgs~dg~v~vwd~~~~---- 142 (760)
.....++.-+... .+++-|......+.... +..+.+.|..+. +.+ ++.|-.+|.+.+||....
T Consensus 110 ~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 110 KPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII 189 (323)
T ss_pred CCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee
Confidence 0000111111100 02222222112222221 345677787764 333 788899999999987532
Q ss_pred --------eEEeecCCcCeEEEEEeCC-CcEEEEECCCcEEEEeCCCc----e--EEeecCCCceEEEEEeCCCe-EEEE
Q 004329 143 --------VEFWEAHNAPIQTVIRIPS-GEIVSGSSDTTIKLWKGKKC----A--QTFVGHTDTVRGLSVMPGVG-IISA 206 (760)
Q Consensus 143 --------~~~~~~~~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~~~~----~--~~~~~h~~~V~~l~~~~~~~-l~s~ 206 (760)
......|..+|.++.+.+. ++=++|+.+..+..|+.... . ....-....|..+.+.||++ ++++
T Consensus 190 ~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA 269 (323)
T KOG0322|consen 190 QLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA 269 (323)
T ss_pred ccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec
Confidence 2334468999999999874 33568888888888874432 1 12233445688899999988 8999
Q ss_pred eCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 207 SHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 207 s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.|++||+|+. +.+++..+.-|...|.+++|+|+. .+++++.|++|.+|+
T Consensus 270 GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 270 GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 99999999995 678888999999999999999996 999999999999997
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=3.6e-11 Score=128.23 Aligned_cols=254 Identities=13% Similarity=0.167 Sum_probs=162.1
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE-eCCCeEEEEECC-CCce--EEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG-GMDTMVLVWDLG-SGEK--VQTL 108 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg-s~dg~I~vwd~~-~~~~--~~~l 108 (760)
+++...|+.|++|++.+.. .......+. +.+....++++|+++ +|+++ ..++.|.+|++. +++. ....
T Consensus 5 y~~~~~~~~I~~~~~~~~g--~l~~~~~~~-~~~~~~~l~~spd~~-----~lyv~~~~~~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG--ALTLLQVVD-VPGQVQPMVISPDKR-----HLYVGVRPEFRVLSYRIADDGALTFAAES 76 (330)
T ss_pred EEEcCCCCCEEEEEECCCC--ceeeeeEEe-cCCCCccEEECCCCC-----EEEEEECCCCcEEEEEECCCCceEEeeee
Confidence 4555789999999996432 223334443 345677899999987 45554 468899999986 3432 2222
Q ss_pred eCCCccEEEEEec--CCeEEEEE-CCCeEEEEECCc------eeEEeecCCcCeEEEEEeCCCc-E-EEEECCCcEEEEe
Q 004329 109 QGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKGK------LVEFWEAHNAPIQTVIRIPSGE-I-VSGSSDTTIKLWK 177 (760)
Q Consensus 109 ~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~~------~~~~~~~~~~~v~~v~~~~~~~-l-~tgs~dg~i~iwd 177 (760)
. .....+.+.++ ++.+++++ .++.+.+|+..+ ...... +.....++.++|+++ + ++...++.|.+||
T Consensus 77 ~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 77 P-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred c-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 2 23456778887 55566655 488999997742 222222 233456788999987 4 4555679999999
Q ss_pred CCCc--eE-----Eee-cCCCceEEEEEeCCCe-EEEEeC-CCeEEEEecC---Cc--eEEEeecC------CCcEEEEE
Q 004329 178 GKKC--AQ-----TFV-GHTDTVRGLSVMPGVG-IISASH-DCTIRLWALT---GQ--VLMEMVGH------TAIVYSID 236 (760)
Q Consensus 178 ~~~~--~~-----~~~-~h~~~V~~l~~~~~~~-l~s~s~-dg~I~iwd~~---~~--~~~~~~~h------~~~v~~v~ 236 (760)
.... .. ... ......+.+.|+|+++ ++++.. +++|.+|+++ +. .+..+..+ ......+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 6541 10 011 1234467899999877 555554 8999999985 22 23333221 12334688
Q ss_pred EeCCC-eEEEEe-CCCcEEEEe---CCceEEEEe---cCCcEEEEEEccCCc-EEEEEc-CCcEEEEeCC
Q 004329 237 SHASG-LIVSGS-EDRFAKIWK---DGVCVQSIE---HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVH 296 (760)
Q Consensus 237 ~~p~~-~l~s~s-~Dg~I~iwd---~~~~~~~~~---~~~~v~~v~~~~~g~-lvt~~~-dg~I~vw~~~ 296 (760)
++|++ +++++. .++.|.+|+ .+.....+. .....+.+.++|+|+ ++++.. ++.|.+|+++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999 666664 578999998 232222222 223567899999999 555444 8999999875
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6e-11 Score=117.93 Aligned_cols=224 Identities=15% Similarity=0.196 Sum_probs=117.7
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC--CeE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD--TMV 94 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d--g~I 94 (760)
....+..+.|..+.. |..|+.||. ++|+.+.-.. ..........|..+-|+.. +++..+.+ ..+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS-------LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS-------LVAIVSIKQPRKL 70 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHH-----hhcccCCCeEEEEeecccc-------eeEEEecCCCceE
Confidence 345677778888888 777787775 7888764331 1111222344555556543 34444443 458
Q ss_pred EEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEee---cCCcCeEEEEEeCCCcEEE---
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWE---AHNAPIQTVIRIPSGEIVS--- 166 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~---~~~~~v~~v~~~~~~~l~t--- 166 (760)
++++.+.+..+..+. ...+|.++.++.++++++-.+. |+|||+. +.+.++. .+...+.++..++.+..++
T Consensus 71 kv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~ 148 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG 148 (391)
T ss_pred EEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC
Confidence 888888777666655 4567888888877777766655 8888776 3333332 3444455555554443221
Q ss_pred EECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCe-EEEEec-CCceEEEeecC--CCcEEEEEEeC
Q 004329 167 GSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCT-IRLWAL-TGQVLMEMVGH--TAIVYSIDSHA 239 (760)
Q Consensus 167 gs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~-I~iwd~-~~~~~~~~~~h--~~~v~~v~~~p 239 (760)
....|.|.+||..+ ....+..|.+.+-+++|+++|. ++++|..|+ |||+.+ +|+.+.++... ...|++++|+|
T Consensus 149 s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 149 STTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 11234455554332 2223444555555555554443 444444444 244443 34444444421 12344444444
Q ss_pred CC-eEEEEeCCCcEEEEe
Q 004329 240 SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 240 ~~-~l~s~s~Dg~I~iwd 256 (760)
++ +|++.|..++|++|.
T Consensus 229 ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFK 246 (391)
T ss_pred CCCeEEEecCCCeEEEEE
Confidence 44 444444444444444
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=142.41 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=158.4
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec----CCeEEEEECC
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD----NEDIVSSSVD 131 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~----~~~l~sgs~d 131 (760)
....+.||.+.|+|+.|+.++. +|++|+.|-.+.|||.-..+++..+. +|...|.++.|- +..+++|+.|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-----lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-----LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhhccccceecceeecCCCC-----EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 4457889999999999999998 79999999999999998888877764 899999999993 5559999999
Q ss_pred CeEEEEECC------------ceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceE---Ee---------
Q 004329 132 STLKRWRKG------------KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQ---TF--------- 185 (760)
Q Consensus 132 g~v~vwd~~------------~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~---~~--------- 185 (760)
..|+++|+. .....+..|...|..++..|++. +.+++.||+|+-+|++++.. ..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 999999865 34455667888888888888874 78999999999999775321 11
Q ss_pred ecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCCce--E
Q 004329 186 VGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVC--V 261 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~--~ 261 (760)
...--...++.++|... |++|+.|-..++||.+... ..+.. .... ..+|. -.++.|+-|-.+.. .
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l-ks~~s--~~~~--~~~pp------~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL-KSFRS--DGTM--NTCPP------KDCRCVRYFSPGHLKNS 265 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc-cCCCC--Cccc--cCCCC------cccchhheecCccccCc
Confidence 11123456788888433 8888888888888853211 11111 1110 11111 12333444432211 0
Q ss_pred EE-Ee-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 262 QS-IE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 262 ~~-~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
+- +. .....+-++|+|+|. +++.-....|++|++..++..
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00 11 112467789999999 776666778999999887643
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=139.21 Aligned_cols=170 Identities=20% Similarity=0.277 Sum_probs=133.4
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
.+.++|.||++.|+|+.|+.+|. |++||.|-.+.|||.-..+ .....-.+|...|.|+.|.|... +..+++|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tn---nriv~sg 113 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTN---NRIVLSG 113 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCC---CeEEEec
Confidence 45678999999999999999999 9999999999999987333 12334478999999999999876 3489999
Q ss_pred eCCCeEEEEECCCC----------ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEEee--------
Q 004329 89 GMDTMVLVWDLGSG----------EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEFWE-------- 147 (760)
Q Consensus 89 s~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~-------- 147 (760)
..|..|+++|+... +....+..|...|..|+.. ++.+.+++.||+++-+|++++...-.
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999999999742 3445567888999888875 46699999999999999875322111
Q ss_pred ----cCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceEEee
Q 004329 148 ----AHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQTFV 186 (760)
Q Consensus 148 ----~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~~~~ 186 (760)
..--...|+..+|... +++|+.|-..++||.+...+.+.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 1123467888999755 88999999999999766555443
No 202
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.47 E-value=2.9e-12 Score=124.72 Aligned_cols=223 Identities=18% Similarity=0.303 Sum_probs=162.7
Q ss_pred CCCEEEEEEc-------CCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC---CCeEEEEEeCCCCCCCCcEEEE
Q 004329 19 EDDVRGICVC-------DNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT---SFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 19 ~~~V~~v~~~-------~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~~~~~~l~s 87 (760)
...|...+|- |+.. +++.++|.-|++||.-+++.+ .......|. ....+++|+|++. -+.
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr---aSy~~ydh~de~taAhsL~Fs~DGe------qlf 174 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR---ASYRAYDHQDEYTAAHSLQFSPDGE------QLF 174 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc---cchhhhhhHHhhhhheeEEecCCCC------eEe
Confidence 4557777764 5555 899999999999999888732 111222333 2456899999998 344
Q ss_pred EeCCCeEEEEEC-CCCce--EEEEe-----CCCccEEEEEec---CCeEEEEECCCeEEEE--ECCceeEEeecCCcCeE
Q 004329 88 GGMDTMVLVWDL-GSGEK--VQTLQ-----GHKLQVTGVTLD---NEDIVSSSVDSTLKRW--RKGKLVEFWEAHNAPIQ 154 (760)
Q Consensus 88 gs~dg~I~vwd~-~~~~~--~~~l~-----~h~~~V~~l~~~---~~~l~sgs~dg~v~vw--d~~~~~~~~~~~~~~v~ 154 (760)
++....|+++|+ +.|+. +.... +..+.+.|++|+ .+.++.|+...++-+| +-+.++..+-+|.+.|+
T Consensus 175 aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 175 AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 566789999999 55532 22222 336778899997 3458999988887776 55688889999999999
Q ss_pred EEEEeCCCc-EEEEEC-CCcEEEEeCCCc---eEEeecCCC-ceEEEEE--eCCCe-EEEEeCCCeEEEEecC--CceEE
Q 004329 155 TVIRIPSGE-IVSGSS-DTTIKLWKGKKC---AQTFVGHTD-TVRGLSV--MPGVG-IISASHDCTIRLWALT--GQVLM 223 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~-dg~i~iwd~~~~---~~~~~~h~~-~V~~l~~--~~~~~-l~s~s~dg~I~iwd~~--~~~~~ 223 (760)
.+.|.++|. +++|+. |-.|..||++.. +..+..|.+ .-..|-| .|.+. +++|+.||.|++||++ ++.+.
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 999999987 777765 778999997753 344555655 3334444 34444 8899999999999985 56677
Q ss_pred EeecCCCcEEEEEEeCCC-eEEEEeCCC
Q 004329 224 EMVGHTAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
.+..|...++.++++|-- .+++++..+
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccccccccccceecCcccceeeeccCce
Confidence 788899999999999987 677766544
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.3e-12 Score=124.81 Aligned_cols=328 Identities=12% Similarity=0.147 Sum_probs=212.6
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC------CceEEEEe-CCCccEEEEEec--CCeEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS------GEKVQTLQ-GHKLQVTGVTLD--NEDIVS 127 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~------~~~~~~l~-~h~~~V~~l~~~--~~~l~s 127 (760)
+.+-+.+|.+.|+++.|+.++. +|++|+.|..+++|+++. .+++.... .|...|.|+.|+ +..+++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-----EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 4556778999999999999976 699999999999999853 34555443 456899999998 555999
Q ss_pred EECCCeEEEEECCceeEE-eecC---CcCeEEEEEeCC-CcEEEEECCCcEEEEeCCCce---E--EeecCCCceEEEEE
Q 004329 128 SSVDSTLKRWRKGKLVEF-WEAH---NAPIQTVIRIPS-GEIVSGSSDTTIKLWKGKKCA---Q--TFVGHTDTVRGLSV 197 (760)
Q Consensus 128 gs~dg~v~vwd~~~~~~~-~~~~---~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~~~~~---~--~~~~h~~~V~~l~~ 197 (760)
|..+++|...|+...... ...| .+.|..+..+|- +.+++.+.++.|.+||.+... . ..........++.|
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 999999999998633322 2233 358999999995 448899999999999966432 1 22234556778899
Q ss_pred eCCCe--EEEEeCCCeEEEEecCCc--eEEEee---cCC---CcEEEEEEeCCC-eEEEEeCCCcEEEEe--C-CceEEE
Q 004329 198 MPGVG--IISASHDCTIRLWALTGQ--VLMEMV---GHT---AIVYSIDSHASG-LIVSGSEDRFAKIWK--D-GVCVQS 263 (760)
Q Consensus 198 ~~~~~--l~s~s~dg~I~iwd~~~~--~~~~~~---~h~---~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~-~~~~~~ 263 (760)
+|... +++.+..+-+-+||.+.. .+.... +.. ..-.++.|+|+| .+.+--....-.+|| . .-.+..
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 99544 888899999999997533 222211 222 223678899999 666655555556677 2 223333
Q ss_pred EecC-------CcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhh-hhhhhhcccceEEeccccCceeeecCCCCc
Q 004329 264 IEHP-------GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLE-LEAYASELSQYKLCRKKVGGLKLEDLPGLE 335 (760)
Q Consensus 264 ~~~~-------~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~ 335 (760)
+.|. ..+.+++|..|..+++|+.+=.|++|.+....-..-+. +...+..+..-.+. ..+
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i-------------~~~ 349 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI-------------EKE 349 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhee-------------cce
Confidence 3332 36788899888889999999999999987544333221 00001111000000 111
Q ss_pred eeeccCCC---------cceEEEEeeCCceEEEEEeccccceeeccceeeCCCCCCCcccccCccceEEEEeecCCCCCc
Q 004329 336 ALQIPGTN---------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPT 406 (760)
Q Consensus 336 ~l~~~g~~---------~g~~~~v~~~~~~~~~~w~~~~~~W~~~g~~~~~~~~~~~~~~~~g~~yd~vf~vdi~~g~~~ 406 (760)
...+.||. .-...++.+|-...+-+|+--...|...+.+-+ +.-.+|||.
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~D~~~E~----------~~H~~YD~s----------- 408 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSYDLPFER----------RPHGTYDLS----------- 408 (609)
T ss_pred eEEEecccccccceeecCCcceEeccchhhheeccccccCCcccCCcccc----------CCCccccch-----------
Confidence 11222222 122344555656678899877777777665532 334566652
Q ss_pred cccCccCCCChHHHHHHHHHhC
Q 004329 407 RKLPYNRSDNPYDAADKWLLKE 428 (760)
Q Consensus 407 ~~l~yn~~~~p~~~a~~f~~~~ 428 (760)
...|+|-..|.|-+.+.
T Consensus 409 -----a~eE~~R~M~~RR~vE~ 425 (609)
T KOG4227|consen 409 -----AEEECLREMEERRVVED 425 (609)
T ss_pred -----hhhhcHHHHHHHHhhcc
Confidence 23477888886655543
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.45 E-value=4.1e-12 Score=133.23 Aligned_cols=216 Identities=18% Similarity=0.257 Sum_probs=152.6
Q ss_pred EECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-------ceEEEE
Q 004329 36 SSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-------EKVQTL 108 (760)
Q Consensus 36 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-------~~~~~l 108 (760)
.+..|.|-||++.......--..-.+ .....|+.+.|.|-+.. .|+.++.||.|++|.+..+ .+...+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~----rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDE----RLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChH----HeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 46679999999974332111111111 24567999999998765 5999999999999998654 456778
Q ss_pred eCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce
Q 004329 109 QGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA 182 (760)
Q Consensus 109 ~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~ 182 (760)
..|...|+++.|+ .+.+++++.|-+|++||+. +....+.+|.+.|..++|+|+|+ +++.|.||+|++|+.++..
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 8999999999998 5679999999999999985 66778899999999999999998 8899999999999976544
Q ss_pred EEeecCCCce----EEEEEeCCCe-EEEEeCC----CeEEEEec---CCceEEEeecC-CCcEEEEEEeCCC--eEEEEe
Q 004329 183 QTFVGHTDTV----RGLSVMPGVG-IISASHD----CTIRLWAL---TGQVLMEMVGH-TAIVYSIDSHASG--LIVSGS 247 (760)
Q Consensus 183 ~~~~~h~~~V----~~l~~~~~~~-l~s~s~d----g~I~iwd~---~~~~~~~~~~h-~~~v~~v~~~p~~--~l~s~s 247 (760)
..+....+++ -.+.|.-+++ +++.+.| +.|.+||. .+..+.+..-. ...+.--.+.+|. +|++|-
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 4433322222 2344544555 5555444 45778873 33444332211 1111111233444 889999
Q ss_pred CCCcEEEEe
Q 004329 248 EDRFAKIWK 256 (760)
Q Consensus 248 ~Dg~I~iwd 256 (760)
.|..|.+|.
T Consensus 834 GD~~v~~yE 842 (1012)
T KOG1445|consen 834 GDRFVNMYE 842 (1012)
T ss_pred CCceEEEEE
Confidence 999999998
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.5e-11 Score=135.49 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=133.7
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
|+.||..... .+.+..|...+.+.+|+|+|+ |+.++.+ ..|++||+.++.. .....+.+| ..+.+|+|+
T Consensus 186 i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 186 VRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---KVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred EEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---EEEecCCCc---cCceeECCC
Confidence 3566766554 466788889999999999998 7777654 3799999986641 122223333 446899999
Q ss_pred CCCCCCcEEEEE-eCCCeEEE--EECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEEC--C-ceeEEee
Q 004329 77 NEEFPEGGLVSG-GMDTMVLV--WDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRK--G-KLVEFWE 147 (760)
Q Consensus 77 ~~~~~~~~l~sg-s~dg~I~v--wd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~--~-~~~~~~~ 147 (760)
+. .|+.+ +.+|.+.+ ||+.+++. ..+..+...+.+..|+ +..++.++ .+|...+|+. . .....+
T Consensus 259 G~-----~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 259 GS-----RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CC-----EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 98 35544 56776555 46665553 4455566667777776 34444443 5677777753 2 222222
Q ss_pred cCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce-EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEe---cCCce
Q 004329 148 AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA-QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWA---LTGQV 221 (760)
Q Consensus 148 ~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~-~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd---~~~~~ 221 (760)
.+.. .+..|+|+|+ ++.++.++ +..||..... ..+..+ ....+..|+|++. ++.++.++.+.+|. .+|..
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 2322 3456777776 44444443 4457754322 222211 1234566777665 66666677666554 46777
Q ss_pred EEEeecCCCcEEEEEEeCC
Q 004329 222 LMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~ 240 (760)
...+..|.+.+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 7777777777777777763
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.38 E-value=7.2e-11 Score=133.17 Aligned_cols=240 Identities=19% Similarity=0.217 Sum_probs=160.8
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-------ceEEEEeCCCccEEEEEe--cCCeEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-------EKVQTLQGHKLQVTGVTL--DNEDIVS 127 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~~l~s 127 (760)
.+..+..|...|..++.+++... ++++||.||+|++|+...- +...++......+.++.. .++.++.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s----~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTS----LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred EeehhhhccccccceeecCCCCc----eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 56677889999999999888743 6999999999999998532 222333334556666655 4778999
Q ss_pred EECCCeEEEEECCc---------eeEEeecC-CcCeEEE-EEeCC--C-cEEEEECCCcEEEEeCCCceE----EeecCC
Q 004329 128 SSVDSTLKRWRKGK---------LVEFWEAH-NAPIQTV-IRIPS--G-EIVSGSSDTTIKLWKGKKCAQ----TFVGHT 189 (760)
Q Consensus 128 gs~dg~v~vwd~~~---------~~~~~~~~-~~~v~~v-~~~~~--~-~l~tgs~dg~i~iwd~~~~~~----~~~~h~ 189 (760)
++.||.|++.+++. +.+....+ .+.+.++ ++... . .++.+..-+.|..||.+.... ......
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 99999999997653 11122222 2333333 33322 2 267888889999999775432 233355
Q ss_pred CceEEEEEeCCCe-EEEEeCCCeEEEEecCCce-EEEee-cCCCcEEEEEEeCC----C-eEEEEe-CCCcEEEEe--CC
Q 004329 190 DTVRGLSVMPGVG-IISASHDCTIRLWALTGQV-LMEMV-GHTAIVYSIDSHAS----G-LIVSGS-EDRFAKIWK--DG 258 (760)
Q Consensus 190 ~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~-~~~~~-~h~~~v~~v~~~p~----~-~l~s~s-~Dg~I~iwd--~~ 258 (760)
+.|++++.+|.+. +++|+..|.+.+||++-+. +..+. ++..++..+..+|- . .+.+++ ..+.|.+|+ .+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 8899999999555 9999999999999987543 33332 45577887777653 2 344444 578899999 55
Q ss_pred ceEEEEec------------------CC---cEEEEEEccCCcEEEEEcCCcEEEEeCCCCee
Q 004329 259 VCVQSIEH------------------PG---CVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 259 ~~~~~~~~------------------~~---~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~ 300 (760)
.+...+-. +. .+.+..-.+++.+++|++|+.||.||......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 55444421 11 12222223444489999999999999876543
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=2.3e-12 Score=131.08 Aligned_cols=221 Identities=17% Similarity=0.216 Sum_probs=177.8
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEEC-CceeE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRK-GKLVE 144 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~-~~~~~ 144 (760)
.-..+.|+.++. +++.|+..|.|..+|..++++...+. -...|..+.|- +..++.......++|||- +..+.
T Consensus 131 GPY~~~ytrnGr-----hlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGR-----HLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELH 204 (545)
T ss_pred CCeeeeecCCcc-----EEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEe
Confidence 456788888887 69999999999999999999887776 34567777774 667888888899999986 56666
Q ss_pred EeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe--CCCceEEeecCCCceEEEEEeC-CCeEEEEeCCCeEEEEecC-C
Q 004329 145 FWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK--GKKCAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALT-G 219 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd--~~~~~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~-~ 219 (760)
.++.| ..|..+.|.|... +++++..|.++.-| .++.+..+....+.+..++-+| +..+-+|...|+|.+|+.+ .
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 66655 4678899999877 66888889999888 4456666777778889999999 4447889999999999964 5
Q ss_pred ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeC
Q 004329 220 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 220 ~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~ 295 (760)
+++..+..|.++|.++++.++| ++++.|.|+.++||| ....+.++..+.+...+++|..| +++.+....|.||.-
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehh
Confidence 6777888999999999999999 999999999999999 33344555556678888998877 555666678899963
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.6e-11 Score=131.74 Aligned_cols=222 Identities=16% Similarity=0.181 Sum_probs=149.2
Q ss_pred CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC---CeEEEEECCCCce--EEEEeCCCc
Q 004329 39 DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD---TMVLVWDLGSGEK--VQTLQGHKL 113 (760)
Q Consensus 39 Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d---g~I~vwd~~~~~~--~~~l~~h~~ 113 (760)
+..|.+||.+... ...+..|...+.+.+|+|+++ .++.++.+ ..|++||+.+++. +..+.+|.
T Consensus 183 ~~~i~i~d~dg~~------~~~lt~~~~~v~~p~wSPDG~-----~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~- 250 (429)
T PRK01742 183 PYEVRVADYDGFN------QFIVNRSSQPLMSPAWSPDGS-----KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN- 250 (429)
T ss_pred eEEEEEECCCCCC------ceEeccCCCccccceEcCCCC-----EEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc-
Confidence 4689999987332 345567888999999999998 46655543 4799999988754 33334443
Q ss_pred cEEEEEec--CCeEEEE-ECCCeEEEE--ECC-ceeEEeecCCcCeEEEEEeCCCc-EEE-EECCCcEEEEeC--CCceE
Q 004329 114 QVTGVTLD--NEDIVSS-SVDSTLKRW--RKG-KLVEFWEAHNAPIQTVIRIPSGE-IVS-GSSDTTIKLWKG--KKCAQ 183 (760)
Q Consensus 114 ~V~~l~~~--~~~l~sg-s~dg~v~vw--d~~-~~~~~~~~~~~~v~~v~~~~~~~-l~t-gs~dg~i~iwd~--~~~~~ 183 (760)
.+.+|+ ++.++.+ +.+|...+| |.. .....+..+...+....|+|+|+ ++. +..++..++|+. .....
T Consensus 251 --~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 251 --GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred --CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 356776 4556665 468876666 543 44455666777788899999998 554 445788888863 22222
Q ss_pred EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe----C
Q 004329 184 TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----D 257 (760)
Q Consensus 184 ~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd----~ 257 (760)
....+.. ....|+|++. ++.++.++ +.+||+.+.....+..+ ....++.|+|+| +++.++.++.+.+|+ .
T Consensus 329 ~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 329 SLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred EEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 2223433 4577899877 66666655 55589754433333222 233567899999 888888899888776 6
Q ss_pred CceEEEEe-cCCcEEEEEEccC
Q 004329 258 GVCVQSIE-HPGCVWDAKFLEN 278 (760)
Q Consensus 258 ~~~~~~~~-~~~~v~~v~~~~~ 278 (760)
+...+.+. |.+.++..+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 77777776 6677888999884
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.5e-12 Score=129.13 Aligned_cols=251 Identities=21% Similarity=0.317 Sum_probs=189.3
Q ss_pred CccccCCCceEeEEec-cCCCCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 1 MMDIDFKEYQLSSELR-GHEDDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~-gH~~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
|+.||+...+....+. ||...|..-.|.|... +++++.||.+|+=.+..... ......+..|.+.|.-++.-|.
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~--~e~t~rl~~h~g~vhklav~p~ 243 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY--VENTKRLAPHEGPVHKLAVEPD 243 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc--eecceecccccCccceeeecCC
Confidence 5789998888777765 8999999888886533 99999999999988763331 2235567789999999999999
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCceEEEE---eCCCc---cEEEEEec---CCeEEEEECCCeEEEEECCce-----
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL---QGHKL---QVTGVTLD---NEDIVSSSVDSTLKRWRKGKL----- 142 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~---~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~----- 142 (760)
.... +.+++.|+.+.-+|+.++.+...+ ..+.. ....++.+ .+.+++|+.|..+++||.+..
T Consensus 244 sp~~----f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 244 SPKP----FLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred CCCc----ccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence 8864 999999999999999887543332 23333 45667765 345999999999999986421
Q ss_pred ---eEEee------cCCcCeEEEEEeCCC-cEEEEECCCcEEEEeCC--------------CceE-EeecCCC--ceEEE
Q 004329 143 ---VEFWE------AHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGK--------------KCAQ-TFVGHTD--TVRGL 195 (760)
Q Consensus 143 ---~~~~~------~~~~~v~~v~~~~~~-~l~tgs~dg~i~iwd~~--------------~~~~-~~~~h~~--~V~~l 195 (760)
+..+. .....|++++++.++ .+++...|-.|++|... ...+ .+++|.. .|.++
T Consensus 320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 12222 224568999999665 49999999999999521 1122 3778764 47777
Q ss_pred EEeC--CCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC
Q 004329 196 SVMP--GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD 257 (760)
Q Consensus 196 ~~~~--~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~ 257 (760)
-|-- ...+++||.-|.|.||+- +++.++-+.+-...|+|+.-+|-- .||++|-|..|+||-.
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 7653 345888888899999996 466677777766799999999988 9999999999999983
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=9.4e-11 Score=117.36 Aligned_cols=242 Identities=11% Similarity=0.160 Sum_probs=181.7
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE------EeCCCccEEEEEecCCeEEEEECCCeEEE
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT------LQGHKLQVTGVTLDNEDIVSSSVDSTLKR 136 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~------l~~h~~~V~~l~~~~~~l~sgs~dg~v~v 136 (760)
.....|.+++|..++... .+...+.|..+..+.+....+... ......+|..+...++.+++|-.+|.+.+
T Consensus 53 ~~~~ris~l~~~~d~~te---vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETE---VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQV 129 (412)
T ss_pred chhhhhhhheeecCCcee---EeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEE
Confidence 345678888888666532 344444777777777766654433 34556778888888999999999999999
Q ss_pred EECC------ceeEEeecCCcCeEEEEEeCCCc--EEEEECC--CcEEEEeCCCceEEeecCC-----------CceEEE
Q 004329 137 WRKG------KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSD--TTIKLWKGKKCAQTFVGHT-----------DTVRGL 195 (760)
Q Consensus 137 wd~~------~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~d--g~i~iwd~~~~~~~~~~h~-----------~~V~~l 195 (760)
|... .....+..+ ..+..+.-++... +++|+.. ..+.+||+.++.+.+.+.. -.++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 9543 233333333 4555666666543 5568888 8899999888877776532 246788
Q ss_pred EEeCC--Ce-EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE-Ee-
Q 004329 196 SVMPG--VG-IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS-IE- 265 (760)
Q Consensus 196 ~~~~~--~~-l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~-~~- 265 (760)
.|.++ .+ |++++.-+.+++||.. .+++..+.-.+.+++++...|++ .+++|..-+.+..+| .+..... +.
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 88876 44 9999999999999964 56778888788999999999999 999999999999999 3444333 33
Q ss_pred cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhh
Q 004329 266 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA 308 (760)
Q Consensus 266 ~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~ 308 (760)
..++|.++..+|.++ ++++|-|..|||+|+++.++++...+.+
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 678999999999999 7788889999999999988777655443
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=2.3e-12 Score=131.04 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=187.4
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
.-..+.++.+|+ ++.|++-|.+-.+|..+.. .. .-..-...|.++.|..... +++......++|||-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-----L~-~Ei~v~Etv~Dv~~LHneq------~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-----LH-FEINVMETVRDVTFLHNEQ------FFAVAQKKYVYVYDN 198 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccce-----ee-eeeehhhhhhhhhhhcchH------HHHhhhhceEEEecC
Confidence 345788899999 9999999999999998665 22 2222356788999988776 566677889999995
Q ss_pred CCCceEEEEeCCCccEEEEEecCCe--EEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEE
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIK 174 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~~~~--l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~ 174 (760)
.|..+..++.| ..|..+.|-+-. |++++..|.++.-|. ++.+..+....+.+..+..+|-+- +-+|...|+|.
T Consensus 199 -~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 199 -NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred -CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 47777777754 457778886333 777888888888776 577777777788888899999776 55899999999
Q ss_pred EEeC--CCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEEEeecCCCcEEEEEEeCCCeEEEEeCCC
Q 004329 175 LWKG--KKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASGLIVSGSEDR 250 (760)
Q Consensus 175 iwd~--~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg 250 (760)
+|.. ..++..+..|.++|.++++.++++ +++++.|..++|||++.. .+.++.. ..+...+++|..|+|+.+- ..
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~-G~ 354 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSY-GD 354 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeec-CC
Confidence 9984 456667788999999999999777 999999999999998653 3444433 4567778888887666554 44
Q ss_pred cEEEEe---C--CceEEE-Eec--CCcEEEEEEccCCcEEEEEc
Q 004329 251 FAKIWK---D--GVCVQS-IEH--PGCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 251 ~I~iwd---~--~~~~~~-~~~--~~~v~~v~~~~~g~lvt~~~ 286 (760)
.|.||. . +.+-.. +.| .++|..+.|+|-.+++..|.
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 699997 2 111111 223 45999999999877554444
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=4.2e-09 Score=103.03 Aligned_cols=222 Identities=15% Similarity=0.211 Sum_probs=151.8
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC--CeEEEEEeCCCCCCCCcEEEEEeCC------
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS--FVGPLAWISPNEEFPEGGLVSGGMD------ 91 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~l~sgs~d------ 91 (760)
...+++|+.|.. ++.|..+ -.|||+.+.-+ .......+.+ .+..+-| ..+. +.+.||.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~k-----e~~~r~~~~~G~~~veMLf--R~N~----laLVGGg~~pky~p 74 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFK-----ESASRQFIDGGFKIVEMLF--RSNY----LALVGGGSRPKYPP 74 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchh-----hhhhhccccCchhhhhHhh--hhce----EEEecCCCCCCCCC
Confidence 345589998877 6666554 57999987422 1111111222 2222222 1121 23344433
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC---ceeEEeecC--CcCeEEEEEeCCCcEE-
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG---KLVEFWEAH--NAPIQTVIRIPSGEIV- 165 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~--~~~v~~v~~~~~~~l~- 165 (760)
..+.|||-...+++.++. ...+|.++.+..+++++.- .+.|.+|... +.++.+... ....++++-..+..++
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 469999977777777776 6789999999988877664 5679999765 334444332 2334444444343333
Q ss_pred -EEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCCCe-EEEEeCCCe-EEEEe-cCCceEEEeec--CCCcEEEE
Q 004329 166 -SGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPGVG-IISASHDCT-IRLWA-LTGQVLMEMVG--HTAIVYSI 235 (760)
Q Consensus 166 -tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~-I~iwd-~~~~~~~~~~~--h~~~v~~v 235 (760)
-|-.-|.|++-|+.. ....+..|...|.+++.+-+|. ++++|..|+ ||||| .+|..++++.. ....|+++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 356679999998543 2357789999999999998766 999999998 79999 47888888874 34689999
Q ss_pred EEeCCC-eEEEEeCCCcEEEEe
Q 004329 236 DSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+|+|+. +|+++|+.|+++|+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEE
Confidence 999999 999999999999997
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.8e-11 Score=123.84 Aligned_cols=185 Identities=16% Similarity=0.229 Sum_probs=135.2
Q ss_pred EEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 23 RGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 23 ~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
.+++|+.+|. +++|+.||++|||+..+.. .......|...|.++.|+|++. +|++-+.| ..+||+.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk-----~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----TILEEIAHHAEVKDLDFSPDGK-----FLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----hhhhhHhhcCccccceeCCCCc-----EEEEecCC-ceEEEEecc
Confidence 7899999977 9999999999999965443 4555677999999999999998 68999999 999999999
Q ss_pred CceEEEEeC--CCccEEEEEec-CC-----eEEE-EECCCeEEEEECC-----ceeE--EeecCCcCeEEEEEeCCCc-E
Q 004329 102 GEKVQTLQG--HKLQVTGVTLD-NE-----DIVS-SSVDSTLKRWRKG-----KLVE--FWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 102 ~~~~~~l~~--h~~~V~~l~~~-~~-----~l~s-gs~dg~v~vwd~~-----~~~~--~~~~~~~~v~~v~~~~~~~-l 164 (760)
+..+..... .+.....+.|. ++ ++++ ....+.|+.||.. ...+ ........|++++++++|+ +
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 966665542 23344455564 22 2222 2334456655432 1111 1112345789999999999 5
Q ss_pred EEEECCCcEEEEeCCCceE---EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC
Q 004329 165 VSGSSDTTIKLWKGKKCAQ---TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT 218 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~~~~---~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~ 218 (760)
+.|+.||.|-+++..++.. .-+.|...|+.+.|+|+.+ +++.+.|..+.+..+.
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 6899999999999665544 3356999999999999776 8888888888888754
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.33 E-value=5.5e-09 Score=111.67 Aligned_cols=291 Identities=13% Similarity=0.074 Sum_probs=175.4
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
.+.|..+.+.+.++..+...-..+.|+|||+ ++++++||.|.++|+.+.+ ....+... ....+++++++++
T Consensus 19 ~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-----~v~~i~~G-~~~~~i~~s~DG~-- 90 (369)
T PF02239_consen 19 AVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-----VVATIKVG-GNPRGIAVSPDGK-- 90 (369)
T ss_dssp EEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-----EEEEEE-S-SEEEEEEE--TTT--
T ss_pred EEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-----EEEEEecC-CCcceEEEcCCCC--
Confidence 4578889999999987655445678999998 8888999999999998766 45555443 3467899999998
Q ss_pred CCcEEE-EEeCCCeEEEEECCCCceEEEEeCC-------CccEEEEEec--CCeEEEEEC-CCeEEEEECCc---eeEEe
Q 004329 81 PEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGH-------KLQVTGVTLD--NEDIVSSSV-DSTLKRWRKGK---LVEFW 146 (760)
Q Consensus 81 ~~~~l~-sgs~dg~I~vwd~~~~~~~~~l~~h-------~~~V~~l~~~--~~~l~sgs~-dg~v~vwd~~~---~~~~~ 146 (760)
+++ +...++.+.++|.++.++++.+... ...+.++..+ ...++..-. .+.|.+.|... .....
T Consensus 91 ---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 91 ---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp ---EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred ---EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 455 4457899999999999999887643 3466777654 333555544 47777777642 22223
Q ss_pred ecCCcCeEEEEEeCCCc-E-EEEECCCcEEEEeCCCceEEee------cCCCceEEEEEeCCC-e----------EEEEe
Q 004329 147 EAHNAPIQTVIRIPSGE-I-VSGSSDTTIKLWKGKKCAQTFV------GHTDTVRGLSVMPGV-G----------IISAS 207 (760)
Q Consensus 147 ~~~~~~v~~v~~~~~~~-l-~tgs~dg~i~iwd~~~~~~~~~------~h~~~V~~l~~~~~~-~----------l~s~s 207 (760)
...........|.|+++ + ++...++.|-++|..+...... .|..+...+ .+|.. . .++.-
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccc
Confidence 33445667889999988 3 3445677899999665433221 244444433 23322 1 22222
Q ss_pred CCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEE----eCCCcEEEEeCC--ceEEEEecC--CcEEEEEEcc
Q 004329 208 HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSG----SEDRFAKIWKDG--VCVQSIEHP--GCVWDAKFLE 277 (760)
Q Consensus 208 ~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~----s~Dg~I~iwd~~--~~~~~~~~~--~~v~~v~~~~ 277 (760)
....+.+||. ..+.++++...... ..+..+|++ ++.+. ...++|.++|.. +....+... ..+..+.|++
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 2234445663 45778888876666 788889999 77776 556899999944 344555422 2599999999
Q ss_pred CCc--EEEEEcC-CcEEEEeCCCCeeechhh
Q 004329 278 NGD--IVTACSD-GVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 278 ~g~--lvt~~~d-g~I~vw~~~~~~~~~~~~ 305 (760)
+|+ +++.-.. |.|.+||..+.+....+.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999 4444443 489999999999887665
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=9.7e-11 Score=117.26 Aligned_cols=253 Identities=15% Similarity=0.200 Sum_probs=176.6
Q ss_pred CCCCEEEEEEcCCCe--EEEE-ECCCeEEEEeCCCCCCcc-ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 18 HEDDVRGICVCDNVG--IATS-SRDRTVRFWSLDPSDKRK-YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 18 H~~~V~~v~~~~~~~--l~tg-s~Dg~i~iWd~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
-...|++++|..++. ++.+ +.|..+..+......... ............+|..++.. ++.|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-------dg~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-------DGTLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-------CCEEEEEecCCc
Confidence 345678888886665 4444 467777777665333110 01112333445566655542 346999999999
Q ss_pred EEEEECCCCc----eEEEEeCCCccEEEEEec---CCeEEEEECC--CeEEEEECCceeEEeecCC---------cC--e
Q 004329 94 VLVWDLGSGE----KVQTLQGHKLQVTGVTLD---NEDIVSSSVD--STLKRWRKGKLVEFWEAHN---------AP--I 153 (760)
Q Consensus 94 I~vwd~~~~~----~~~~l~~h~~~V~~l~~~---~~~l~sgs~d--g~v~vwd~~~~~~~~~~~~---------~~--v 153 (760)
+.+|..+.+. ....+..+ ..+..+.-+ ...+++|+.. ..+++||+....+.|.... -+ +
T Consensus 127 l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence 9999988443 22333333 334444433 4447779988 8899999987777776532 23 4
Q ss_pred EEEEEeCC--C-cEEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceE-EE-
Q 004329 154 QTVIRIPS--G-EIVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVL-ME- 224 (760)
Q Consensus 154 ~~v~~~~~--~-~l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~-~~- 224 (760)
+++.|.+. . .|++++.-+.+|+||.+ +++..+.-...++.++...|++. +++|..-|.+..||+++..+ ..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 46777775 3 39999999999999965 45566767788999999999766 88999999999999876543 33
Q ss_pred eecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccC
Q 004329 225 MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLEN 278 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~ 278 (760)
+.+..+.|+++..+|.+ +++++|-|+.+||+| +..++...-....++++.+.++
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 67889999999999998 999999999999999 4345544445566777777554
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=1.4e-09 Score=116.06 Aligned_cols=245 Identities=11% Similarity=0.147 Sum_probs=150.3
Q ss_pred ccccCC---CceEeEEeccCCCCEEEEEEcCCCe-EEEE-ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 2 MDIDFK---EYQLSSELRGHEDDVRGICVCDNVG-IATS-SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 2 ~~~d~~---~~~l~~~l~gH~~~V~~v~~~~~~~-l~tg-s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
..||+. +.++++++. +.+....++++|+++ |+.+ ..++.|.+|+++... ........ ...+....++|+|+
T Consensus 15 ~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~-~~~~~p~~i~~~~~ 90 (330)
T PRK11028 15 HVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAES-PLPGSPTHISTDHQ 90 (330)
T ss_pred EEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeee-cCCCCceEEEECCC
Confidence 456664 234666665 346677899999998 5554 468999999986221 12122222 12345678999999
Q ss_pred CCCCCCcEEEEEe-CCCeEEEEECCCC----ceEEEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECCce--eE--
Q 004329 77 NEEFPEGGLVSGG-MDTMVLVWDLGSG----EKVQTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKGKL--VE-- 144 (760)
Q Consensus 77 ~~~~~~~~l~sgs-~dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~~~--~~-- 144 (760)
++ ++++++ .++.|.+|++++. +.+..+.+ .....+++++ ++++ ++...++.|.+||.... +.
T Consensus 91 g~-----~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 91 GR-----FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CC-----EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 98 455554 5899999999642 22333332 2345566676 4455 55556799999987531 11
Q ss_pred ---Eee-cCCcCeEEEEEeCCCc-EEEEEC-CCcEEEEeCCC---c---eEEeecC------CCceEEEEEeCCCe-EEE
Q 004329 145 ---FWE-AHNAPIQTVIRIPSGE-IVSGSS-DTTIKLWKGKK---C---AQTFVGH------TDTVRGLSVMPGVG-IIS 205 (760)
Q Consensus 145 ---~~~-~~~~~v~~v~~~~~~~-l~tgs~-dg~i~iwd~~~---~---~~~~~~h------~~~V~~l~~~~~~~-l~s 205 (760)
... ........+.++|+++ ++++.. ++.|.+|+... . ...+..+ ......+.++|+++ +++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 011 1233456889999988 445544 89999999642 1 2222211 12234688999877 555
Q ss_pred Ee-CCCeEEEEecCCc-eEEEeecC---CCcEEEEEEeCCC-eEEEEe-CCCcEEEEe
Q 004329 206 AS-HDCTIRLWALTGQ-VLMEMVGH---TAIVYSIDSHASG-LIVSGS-EDRFAKIWK 256 (760)
Q Consensus 206 ~s-~dg~I~iwd~~~~-~~~~~~~h---~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd 256 (760)
+. .++.|.+|++... ...++.++ ......+.++|+| +++++. .+++|.+|+
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 53 4789999997321 11122222 2345678999999 666555 589999997
No 217
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=4.4e-11 Score=117.66 Aligned_cols=281 Identities=21% Similarity=0.287 Sum_probs=188.5
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
+..+.+.++||.+.|++...-|... +++.+.|.++|||--....+ .+..+ ...-..+++++.+.+... .|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q-~wpsI--~~~mP~~~~~~~y~~e~~-----~L~ 84 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ-YWPSI--YHYMPSPCSAMEYVSESR-----RLY 84 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc-cCchh--hhhCCCCceEeeeeccce-----EEE
Confidence 3557788999999999988877666 99999999999997543321 12111 222367889999988877 689
Q ss_pred EEeCCCeEEEEECC----CCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEE--E--------------------
Q 004329 87 SGGMDTMVLVWDLG----SGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRW--R-------------------- 138 (760)
Q Consensus 87 sgs~dg~I~vwd~~----~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vw--d-------------------- 138 (760)
+|-..|++.-+.+. .....+....|...|..+-|+ ...+++.+.|..+.-- .
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFD 164 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCcee
Confidence 99999999888663 233455566788888888776 4456666666543211 0
Q ss_pred ---------------------CCceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC---CceEEeecCCCceE
Q 004329 139 ---------------------KGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK---KCAQTFVGHTDTVR 193 (760)
Q Consensus 139 ---------------------~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~ 193 (760)
.-..+.++.+|.+++.+..|.+... +++|..|..+.+||+. .......+|.+.|+
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 0135566778999999999999766 7899999999999954 24457788999999
Q ss_pred EEEEeCCC-eEEEEeCCCeEEEEecCCceEEEe------------------------------ecC-----CCcEEEEEE
Q 004329 194 GLSVMPGV-GIISASHDCTIRLWALTGQVLMEM------------------------------VGH-----TAIVYSIDS 237 (760)
Q Consensus 194 ~l~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~------------------------------~~h-----~~~v~~v~~ 237 (760)
.++..+-. ++++++.||.|.+|+++.....+. ..| ...+...+-
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~ 324 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCS 324 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccc
Confidence 99887744 499999999999999743221110 001 111222221
Q ss_pred eCCCeEEEEeCCCcEEEEe---------CCceEEEEecC--CcEEEEEEccCC-cEEEEEcCCcEEEEeCCC
Q 004329 238 HASGLIVSGSEDRFAKIWK---------DGVCVQSIEHP--GCVWDAKFLENG-DIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 238 ~p~~~l~s~s~Dg~I~iwd---------~~~~~~~~~~~--~~v~~v~~~~~g-~lvt~~~dg~I~vw~~~~ 297 (760)
+......+.+..-.+|+-| ...++..+ |. ..|+.+.+..+- .++|+|.|..|+|||+.+
T Consensus 325 s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p-hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 325 SNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP-HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cCccccccccceeEEEEecccchhhhcCCCCccccc-cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111333444444566555 22222222 33 368888776653 399999999999999864
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.2e-10 Score=114.88 Aligned_cols=182 Identities=17% Similarity=0.248 Sum_probs=131.6
Q ss_pred EEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCc--eEEee--
Q 004329 116 TGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC--AQTFV-- 186 (760)
Q Consensus 116 ~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~--~~~~~-- 186 (760)
.+++++ +..+++|+.||++|+|+.. ..+.....|...|.++.|+|||+ +++-+.| ..++|+.... +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 455665 6779999999999999954 44555668899999999999998 6788888 9999996653 22222
Q ss_pred cCCCceEEEEEeCCC-----eE-EEEeCCCeEEEEecC---C-ce--EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEE
Q 004329 187 GHTDTVRGLSVMPGV-----GI-ISASHDCTIRLWALT---G-QV--LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAK 253 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~-----~l-~s~s~dg~I~iwd~~---~-~~--~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~ 253 (760)
........+.|+.++ ++ +....-+.|+.|++. + .. ..+.......|.+++++++| +++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 122334455666554 33 233445667777742 1 11 12222334579999999999 999999999999
Q ss_pred EEe--CCceEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 254 IWK--DGVCVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 254 iwd--~~~~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
|++ .-++++.++ |...|+.+.|+|+.+ +++.+.|...++..+.-+
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999 445555555 778999999999988 888888999998887653
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=1.3e-10 Score=120.45 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=96.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEe----CCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQ----GHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTV 156 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~----~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v 156 (760)
-++.|-.-|.|.+.|....+..+.+. -.+..|+|+.|- +..++..-++|.+.+||..... +...+ +.
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----~~t~p--~~ 260 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----GATAP--SY 260 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----cCCCC--cc
Confidence 37888888999999986633222121 234789999994 5669999999999999752100 00000 00
Q ss_pred EEeCCCcEEEEECCCcEEEEe---CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCce-EEEeecCCCc
Q 004329 157 IRIPSGEIVSGSSDTTIKLWK---GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQV-LMEMVGHTAI 231 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd---~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~-~~~~~~h~~~ 231 (760)
...+++..++ |..|. .+.++..+.--.+.|...+|+||++ +++.+.||.+||||...+. +..++..-+.
T Consensus 261 ~~~k~~~~f~------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG 334 (636)
T KOG2394|consen 261 QALKDGDQFA------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG 334 (636)
T ss_pred cccCCCCeeE------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence 1111211000 01110 1123333333344566666666555 6666666666666654332 2223333455
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEcc
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLE 277 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~ 277 (760)
..|++|+||| ++++|++|.-|.||. .++.+..-. |..+|..|+|.|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 6666666666 666666666666666 333333322 566666666654
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.6e-10 Score=118.08 Aligned_cols=267 Identities=15% Similarity=0.158 Sum_probs=183.2
Q ss_pred cCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCC-CC-CeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 17 GHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-TS-FVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-~~-~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
+|....+.|..+|||+ ++||..--.|++||+..-. ..+..| .. .|.-.-.+.+-.+ ++.-..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK-----~v~L~~DR 116 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSK-----SVFLQNDR 116 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhh-----heEeecCc
Confidence 4777888999999999 8999999999999997322 233334 22 3333333333332 45555667
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCc-EEEE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGE-IVSG 167 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~-l~tg 167 (760)
+|.+...- |.. ..++ -...-..++++ ..-+++++....|+-+++ +..+..+....+.++++..++... +++|
T Consensus 117 ~IefHak~-G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 117 TIEFHAKY-GRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred eeeehhhc-Cee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 66654321 211 1111 11122344554 333666666667777765 466667777788999999999766 6677
Q ss_pred ECCCcEEEEeCCCc--eEE------eecCCC-----ceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecC--CCc
Q 004329 168 SSDTTIKLWKGKKC--AQT------FVGHTD-----TVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGH--TAI 231 (760)
Q Consensus 168 s~dg~i~iwd~~~~--~~~------~~~h~~-----~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h--~~~ 231 (760)
+.+|.|.+||.+.. ... ...|.+ .|+++.|+.++. +++|+.+|.+.|||++.........| ..+
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 88999999996532 111 222333 499999998666 99999999999999976655555555 458
Q ss_pred EEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 232 VYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 232 v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
|..+.|.+.+ --+.......++||| +|+....+.....+..+|+.|++- ++++-.++.+..|=+..-
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 8899998774 334445567899999 889999998888899999999877 788888888877766543
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=1.9e-10 Score=112.35 Aligned_cols=272 Identities=13% Similarity=0.169 Sum_probs=176.0
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|.+|++..-+-...+.....++.+++|+|+|+ |.+...|-.|.+|.+.+.. ...+..-+..+..++|+|+++
T Consensus 73 vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred EEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEecccccCceeEEECCCCc
Confidence 35677777777788888889999999999997 8888899999999998654 122233355678899999998
Q ss_pred CCCCcEEEEEeCCCe---EEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecC-CcCeE
Q 004329 79 EFPEGGLVSGGMDTM---VLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAH-NAPIQ 154 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~---I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~v~ 154 (760)
+.+..+.-.. +.+...+.-..++.++-.+-..+.+.|+++ +..+.+||.--....+.-| .-.+.
T Consensus 147 -----f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv~aYe~~lG~k 214 (447)
T KOG4497|consen 147 -----FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKVYAYERGLGLK 214 (447)
T ss_pred -----eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchhhheeeeeeecccee
Confidence 3444443211 111111112233444444555666667632 2334566653222222222 34577
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeC------CC---------c-------------------------------------
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKG------KK---------C------------------------------------- 181 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~------~~---------~------------------------------------- 181 (760)
.+.|+|.++ ++.|+.|+.+|+.+- ++ +
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~ 294 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET 294 (447)
T ss_pred EEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence 788888777 568888888877430 00 0
Q ss_pred ----------eEEee------cCCCceEEEEEeCCCeEEEEeCCC---eEEEEecCCceEEEeecCCCcEEEEEEeCCC-
Q 004329 182 ----------AQTFV------GHTDTVRGLSVMPGVGIISASHDC---TIRLWALTGQVLMEMVGHTAIVYSIDSHASG- 241 (760)
Q Consensus 182 ----------~~~~~------~h~~~V~~l~~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~- 241 (760)
.+.++ .....+.-++|++|..+++.-+|. .+-+||++...+........+|....|+|..
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p 374 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP 374 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc
Confidence 00000 112235678899988887777775 4889998877777666677889999999988
Q ss_pred eEEEEeCCCcEEEEe-CCceEEEEecCC-cEEEEEEccCCc-EEEEEcCCcE
Q 004329 242 LIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFLENGD-IVTACSDGVT 290 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd-~~~~~~~~~~~~-~v~~v~~~~~g~-lvt~~~dg~I 290 (760)
.++.+.....+++|. .+...-....++ .|..+.|..+|. ++..+.|...
T Consensus 375 rL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 375 RLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred eEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 777777777799998 443332333444 899999999998 6666666543
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=7.5e-09 Score=101.32 Aligned_cols=223 Identities=10% Similarity=0.142 Sum_probs=148.3
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC--ccEEEEEecCCe-EEEEECC------CeEEEEE
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK--LQVTGVTLDNED-IVSSSVD------STLKRWR 138 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~--~~V~~l~~~~~~-l~sgs~d------g~v~vwd 138 (760)
..+++|..|.. .+++|. |.-.++|+.+--+.......+. -.+..+-|..++ .+.|+.+ ..+.|||
T Consensus 8 ~lsvs~NQD~S-----cFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHS-----CFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCc-----eEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence 34588988876 355555 4558999987543322222222 223333444555 3444433 3599998
Q ss_pred CC--ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC---CceEEeecCC--CceEEEEEeCCCe-EEE-EeCC
Q 004329 139 KG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK---KCAQTFVGHT--DTVRGLSVMPGVG-IIS-ASHD 209 (760)
Q Consensus 139 ~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~---~~~~~~~~h~--~~V~~l~~~~~~~-l~s-~s~d 209 (760)
-. .++..+ ....+|.++.+.++.. +.-..+.|.+|... +.++.+.... ....+++-..+.. ++. |-.-
T Consensus 82 D~k~~~i~el-~f~~~I~~V~l~r~ri--Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIEL-SFNSEIKAVKLRRDRI--VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEE-EeccceeeEEEcCCeE--EEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 53 333332 3567899998876543 23346789999744 2333443322 2233333322333 332 4456
Q ss_pred CeEEEEecCCceE---EEeecCCCcEEEEEEeCCC-eEEEEeCCCc-EEEEe--CCceEEEEe---cCCcEEEEEEccCC
Q 004329 210 CTIRLWALTGQVL---MEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE---HPGCVWDAKFLENG 279 (760)
Q Consensus 210 g~I~iwd~~~~~~---~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~-I~iwd--~~~~~~~~~---~~~~v~~v~~~~~g 279 (760)
|.|+|-|+..... ..+..|.+.|.|++.+-+| ++|++|..|+ ||||| +++.++.++ ....|.+++|+|++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 9999999754443 7788999999999999999 9999999998 79999 888998887 45699999999999
Q ss_pred c-EEEEEcCCcEEEEeCCCCe
Q 004329 280 D-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 280 ~-lvt~~~dg~I~vw~~~~~~ 299 (760)
. ++++++.|+++||.+....
T Consensus 239 s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCC
Confidence 9 6777778999999998654
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=120.63 Aligned_cols=226 Identities=13% Similarity=0.044 Sum_probs=143.0
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE---CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS---RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs---~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.+|...... +.+..+...+.+.+|+|||+ |+..+ .+..+.+|++.+++. ..+....+.+....|+|++
T Consensus 182 ~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 182 RVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------RQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred EEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------EEccCCCCCcCCeEECCCC
Confidence 4556554433 44555777899999999998 66554 245799999986641 1222233345578999999
Q ss_pred CCCCCcEEEEEeCCC--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC-CeEEEE--ECC-ceeEEeecC
Q 004329 78 EEFPEGGLVSGGMDT--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD-STLKRW--RKG-KLVEFWEAH 149 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d-g~v~vw--d~~-~~~~~~~~~ 149 (760)
.. ++++.+.+| .|++||+.+++... +..+...+....|+ ++.++..+.+ +...+| +.. .....+..+
T Consensus 255 ~~----La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 255 SK----LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred CE----EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence 84 233445555 59999998876644 33344566777886 4556666653 455555 543 233334334
Q ss_pred CcCeEEEEEeCCCc-EEEEEC-C--CcEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEEeCCCe---EEEEecCCc
Q 004329 150 NAPIQTVIRIPSGE-IVSGSS-D--TTIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISASHDCT---IRLWALTGQ 220 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~-d--g~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~---I~iwd~~~~ 220 (760)
........|+|+|+ ++..+. + ..|.+||.... .+.+.. ........|+||+. ++.++.++. +.+++++|.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 44456788999987 444333 3 34777885432 333332 22334677889777 666666654 677788888
Q ss_pred eEEEeecCCCcEEEEEEeCC
Q 004329 221 VLMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~ 240 (760)
....+.+|.+.+...+|+|-
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CeEECccCCCCcCCcccCCC
Confidence 88888888888888888873
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=3e-09 Score=105.54 Aligned_cols=265 Identities=16% Similarity=0.226 Sum_probs=169.6
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
+..++.++|++.-. ++++..|-+||+|+-.. . +...++ .....|.|++|-|.+.. -++.|+. +-|++
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t-----~pt~Lks~sQrnvtclawRPlsas----elavgCr-~gIci 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-T-----CPTKLKSVSQRNVTCLAWRPLSAS----ELAVGCR-AGICI 166 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-C-----CCceecchhhcceeEEEeccCCcc----eeeeeec-ceeEE
Confidence 45788999998655 99999999999999764 2 222332 34678999999998875 3777776 45899
Q ss_pred EECCCC----ce----------EEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEECC--ceeEEeecCCcCeEEEE
Q 004329 97 WDLGSG----EK----------VQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKG--KLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 97 wd~~~~----~~----------~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~--~~~~~~~~~~~~v~~v~ 157 (760)
|..... +. +...++| ..|+++.|+ +..+++++ .|..|.+||.. ..+.......+.+.-+.
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEE
Confidence 987432 11 1122344 689999997 44577776 45679999764 33333334566788899
Q ss_pred EeCCCc-EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceE---------
Q 004329 158 RIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVL--------- 222 (760)
Q Consensus 158 ~~~~~~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~--------- 222 (760)
|+|++. +++++-|+..++|+..+ ..+ .....+.|..-+|+|.+. +++++..-.++-....++..
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence 999988 78999999999996332 222 223445999999999776 45555544444333322111
Q ss_pred -----EEee------c---CCCcEEEEEEeCCC-eEEEEeCCC--------cEEEEeCC-ceEEEEe-----cCCcEEEE
Q 004329 223 -----MEMV------G---HTAIVYSIDSHASG-LIVSGSEDR--------FAKIWKDG-VCVQSIE-----HPGCVWDA 273 (760)
Q Consensus 223 -----~~~~------~---h~~~v~~v~~~p~~-~l~s~s~Dg--------~I~iwd~~-~~~~~~~-----~~~~v~~v 273 (760)
..+. + ..+.+.+++|.|.| ++++.-..+ .|.+||+. ...-.+. .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 0110 1 24678899999999 777765433 35667722 2222221 11134556
Q ss_pred EEcc---CCcE-EEEEcCCcEEEEeCC
Q 004329 274 KFLE---NGDI-VTACSDGVTRIWTVH 296 (760)
Q Consensus 274 ~~~~---~g~l-vt~~~dg~I~vw~~~ 296 (760)
+|.| +|.+ ..+-+.|.+.-|++.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 6665 3444 445557888777654
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=2.2e-09 Score=105.09 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=124.3
Q ss_pred EEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC
Q 004329 24 GICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG 102 (760)
Q Consensus 24 ~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~ 102 (760)
-++|+|+|+ +|++++- .+.|=|..+-+ ...+...-..|.-+.|..+... .+.....|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq------~~qlf~cldki~yieW~ads~~----ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ------LHQLFLCLDKIVYIEWKADSCH----ILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh------HHHHHHHHHHhhheeeecccee----eeeeeeccceEEEEEeecc
Confidence 357999999 8877765 77777766433 1111122456778888877763 4667788999999999988
Q ss_pred ceEEEEeCCCccEEEEEec-CC-e-EEEEECCCeEEEEECCceeEEe-ecCCcCeEEEEEeCCCcEEEEEC--C------
Q 004329 103 EKVQTLQGHKLQVTGVTLD-NE-D-IVSSSVDSTLKRWRKGKLVEFW-EAHNAPIQTVIRIPSGEIVSGSS--D------ 170 (760)
Q Consensus 103 ~~~~~l~~h~~~V~~l~~~-~~-~-l~sgs~dg~v~vwd~~~~~~~~-~~~~~~v~~v~~~~~~~l~tgs~--d------ 170 (760)
+-...+......+.+++|+ ++ . +.+..-|-.|.+|........+ +-.+..+..++|+++|++.+-.. |
T Consensus 82 ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 82 EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 8888888888999999998 33 3 7777889999999876444333 33355678899999998554322 1
Q ss_pred -----------------------------CcEEEEeCCCceEEeecC-CCceEEEEEeCCC-eEEEEeCCCeEEEEe
Q 004329 171 -----------------------------TTIKLWKGKKCAQTFVGH-TDTVRGLSVMPGV-GIISASHDCTIRLWA 216 (760)
Q Consensus 171 -----------------------------g~i~iwd~~~~~~~~~~h-~~~V~~l~~~~~~-~l~s~s~dg~I~iwd 216 (760)
..+.+||.--..+.+.-| .-.+..+.|+|.+ .++.|+.|+.+|+.+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 223334321111112222 2467888999944 488999999998866
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.6e-10 Score=127.40 Aligned_cols=268 Identities=18% Similarity=0.246 Sum_probs=174.9
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCC-ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDK-RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
+++.+..+-. ..+.++..-.+.+||+.++.. ........+..| +.......-.++++++..-+.+..-+
T Consensus 8 ~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--------~~e~~~~l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--------RGEGKVKLLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccc--------cccccceeccceEEEEEeecceeecc
Confidence 3444444433 234445556899999986652 112222333444 11111111123566666655555433
Q ss_pred CCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEee-cCCcC--eEEE---EEeCCCc-EEEEECCC
Q 004329 99 LGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWE-AHNAP--IQTV---IRIPSGE-IVSGSSDT 171 (760)
Q Consensus 99 ~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~~~--v~~v---~~~~~~~-l~tgs~dg 171 (760)
... +....+..+... ..+.+.+..++.++.+..+.+||........+ .+... ..+. ..+++.- +++|+.-+
T Consensus 78 ~~~-~~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 78 ASN-QIIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred hhh-hhhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 321 112222222222 34445577899999999999998753222222 22111 1111 1222222 77899999
Q ss_pred cEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEE-EeecCCCcEEEEEEeCCCeEEEE
Q 004329 172 TIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLM-EMVGHTAIVYSIDSHASGLIVSG 246 (760)
Q Consensus 172 ~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~-~~~~h~~~v~~v~~~p~~~l~s~ 246 (760)
.|.+|+... .-..+.+|.+.|.++.++.++. ++++|.|.++|+|++... ... ...+|+..|..++++|+ .++++
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITV 234 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEe
Confidence 999998432 2225789999999999988766 999999999999998543 333 56799999999999999 99999
Q ss_pred eCCCcEEEEe-CCceEEEEe-cCC-cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCee
Q 004329 247 SEDRFAKIWK-DGVCVQSIE-HPG-CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 247 s~Dg~I~iwd-~~~~~~~~~-~~~-~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~ 300 (760)
++|.+.++|+ .++.+..+. |.+ .+|.++..++.. .+|++.||.+++|++.....
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 9999999998 777777665 655 899999988877 89999999999999875443
No 227
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=7.9e-09 Score=103.10 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=154.2
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe---CCCccEE
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ---GHKLQVT 116 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~V~ 116 (760)
+.+++.+..... .+ .-......|.++.+..+. ++++-.+. |+|||+++.+++.++. .+...++
T Consensus 68 r~Lkv~~~Kk~~-----~I-Ce~~fpt~IL~VrmNr~R-------LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 68 RKLKVVHFKKKT-----TI-CEIFFPTSILAVRMNRKR-------LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred ceEEEEEcccCc-----eE-EEEecCCceEEEEEccce-------EEEEEccc-EEEEecccceeehhhhccCCCccceE
Confidence 347777776332 11 222246678888886653 56665544 9999999999888765 4566788
Q ss_pred EEEecC--CeEEE--EECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCc-EEEEeCCCc--eEEee
Q 004329 117 GVTLDN--EDIVS--SSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTT-IKLWKGKKC--AQTFV 186 (760)
Q Consensus 117 ~l~~~~--~~l~s--gs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~-i~iwd~~~~--~~~~~ 186 (760)
+++++. .+++. ....|.|.+||.. ++...+..|++++-+++|+++|. ++|+|..|+ ||+|..... ...|.
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 888873 35443 2356889999986 66778889999999999999999 779999887 789985543 33443
Q ss_pred c--CCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCc-EEEEEEeCCCeEEEEeCCCcEEEEeCCceEE
Q 004329 187 G--HTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAI-VYSIDSHASGLIVSGSEDRFAKIWKDGVCVQ 262 (760)
Q Consensus 187 ~--h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~-v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~~~ 262 (760)
. ....|.+++|+|+.. +.+.|+.++|++|.+.............. -+.-.++.. +.+---.+.-.+||..+...
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~--~~sylps~V~~~~~~~R~FA 291 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKA--ATSYLPSQVSSVLDQSRKFA 291 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhh--hhhhcchhhhhhhhhcccee
Confidence 3 235688999999887 67778889999999754432111100000 000000000 00000012223477555555
Q ss_pred EEecCC-c-EEEEEEc--cCCc-EEEEEcCCcEEEEeCCCC
Q 004329 263 SIEHPG-C-VWDAKFL--ENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 263 ~~~~~~-~-v~~v~~~--~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+...+. . -..+.+. +... +..++.||.++.|.+...
T Consensus 292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 292 TAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 555332 2 1333444 3444 889999999999998753
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.21 E-value=3.9e-10 Score=117.01 Aligned_cols=256 Identities=14% Similarity=0.125 Sum_probs=158.8
Q ss_pred CCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 004329 29 DNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT 107 (760)
Q Consensus 29 ~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~ 107 (760)
+++. ++.|-.-|.|.+.|....+.... ......-.+..|+|+.|.|.++. .++.+-.+|.+++||.+-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~skl-fne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~sGnlyly~~~~~----- 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKL-FNEERLINKSSVTCIKWVPGSDS----LFLVAHASGNLYLYDKEIV----- 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHh-hhhcccccccceEEEEEEeCCCc----eEEEEEecCceEEeecccc-----
Confidence 5555 88898899999998763221110 00011113578999999998874 5888889999999987211
Q ss_pred EeCCCccEEEEEe-cCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceE
Q 004329 108 LQGHKLQVTGVTL-DNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQ 183 (760)
Q Consensus 108 l~~h~~~V~~l~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~ 183 (760)
......+...+ .++.+....+-+. ..+.++..+....+.|..++|+|||+ +++.+.||.+||||..+ ..-
T Consensus 253 --~~~t~p~~~~~k~~~~f~i~t~ksk----~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 253 --CGATAPSYQALKDGDQFAILTSKSK----KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred --ccCCCCcccccCCCCeeEEeeeecc----ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 00011111111 1333322211110 11255556666667899999999998 88999999999998553 333
Q ss_pred EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe----C
Q 004329 184 TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK----D 257 (760)
Q Consensus 184 ~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd----~ 257 (760)
.++..-+...|++|+||++ +++|++|--|.||.+ ..+.+..-.+|.++|..|+|.|- ..+.-+++...=-| .
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy--tt~~ee~~~~~~~~~~~~~ 404 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY--TTSTEEWNNFSGMDSTFSD 404 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc--ccccccccccccccccccc
Confidence 4555567899999999988 899999999999997 56777888899999999999973 22222111000000 0
Q ss_pred CceEEEEe------cCCcEEEEEEccC---CcEEEEEcCCcEEEEeCCCCeeec
Q 004329 258 GVCVQSIE------HPGCVWDAKFLEN---GDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 258 ~~~~~~~~------~~~~v~~v~~~~~---g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
......++ ..+...+-.+-++ .+|-+.+.|-.+.+||+..+.+..
T Consensus 405 ~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 405 VAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred hhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 00000000 0000001111112 248899999999999999877654
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.6e-09 Score=119.73 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=140.7
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.||.... ..+.+..|...+.+.+|+|||+ |+.++.+ ..|++||+.++.. ..+..+.+...+..|+|++
T Consensus 187 ~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 187 QVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------EEeccCCCCccCceECCCC
Confidence 45666443 3355667788899999999998 7777643 4699999986641 2233344455688999999
Q ss_pred CCCCCcEEEEEeCCC--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCCe--EEEEECC-ceeEEeecC
Q 004329 78 EEFPEGGLVSGGMDT--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDST--LKRWRKG-KLVEFWEAH 149 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--v~vwd~~-~~~~~~~~~ 149 (760)
.. ++++.+.+| .|++||+.+++.. .+..+.......+|+ ++.++.++ .+|. +.+++.. .....+..+
T Consensus 260 ~~----l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~ 334 (433)
T PRK04922 260 RR----LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ 334 (433)
T ss_pred CE----EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC
Confidence 84 245556655 5999999887653 455555555667776 45566655 3454 5555653 223333333
Q ss_pred CcCeEEEEEeCCCc-EEEEECC-C--cEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEEeC---CCeEEEEecCCc
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSD-T--TIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISASH---DCTIRLWALTGQ 220 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~d-g--~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~s~---dg~I~iwd~~~~ 220 (760)
........|+|+|+ ++..+.+ + .|.+||.... .+.+. +........|+|++. ++..+. .+.|.+++.++.
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 33445678999987 4443332 2 5888885432 23332 333455678898776 444443 245777888887
Q ss_pred eEEEeecCCCcEEEEEEeC
Q 004329 221 VLMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p 239 (760)
....+..+.+.+...+|+|
T Consensus 414 ~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEcccCCCCCCCCccCC
Confidence 7777766666677777776
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.6e-09 Score=111.78 Aligned_cols=238 Identities=12% Similarity=0.071 Sum_probs=167.0
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCe--EEEEECCCeEEEEECC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNED--IVSSSVDSTLKRWRKG 140 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~--l~sgs~dg~v~vwd~~ 140 (760)
.|....+.|..+|++.. ++++|...-.|++||+.+-.+...-.-....|.-.-.++++ .+.-..|.+|-+....
T Consensus 49 e~p~ast~ik~s~DGqY----~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY----LLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE----EEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 56778889999999986 58899999999999997654432222223344444445444 6666677777766443
Q ss_pred ceeEEeecCCcCeEEEEEeC-CCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCC-CeEEEEeCCCeEEEEe
Q 004329 141 KLVEFWEAHNAPIQTVIRIP-SGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPG-VGIISASHDCTIRLWA 216 (760)
Q Consensus 141 ~~~~~~~~~~~~v~~v~~~~-~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~-~~l~s~s~dg~I~iwd 216 (760)
.....++.. ..-..++++. +..++.++....|+-+++. ..+..+....+.++++.+++- +.+++|+.+|.|..||
T Consensus 125 G~hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 GRHYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred CeeeeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 322222221 1123455544 3347777777778877754 455677777899999999994 4477888899999999
Q ss_pred cCCc-eEEEee------cCCC-----cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC--cEEEEEEccCC
Q 004329 217 LTGQ-VLMEMV------GHTA-----IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG--CVWDAKFLENG 279 (760)
Q Consensus 217 ~~~~-~~~~~~------~h~~-----~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~--~v~~v~~~~~g 279 (760)
.+.+ .+..+. .|.. .|+++.|+.+| .+++|+.+|.+.||| ..+++..-.|.. +|..+.|.+.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 7433 222222 2333 49999999999 999999999999999 556666666665 89999998864
Q ss_pred c--EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 280 D--IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 280 ~--lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
+ -+.+.....++|||-.+|+....++
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred CCceEEecchHHhhhcccccCCceeecc
Confidence 4 6777778899999999999776555
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.6e-09 Score=117.14 Aligned_cols=225 Identities=15% Similarity=0.042 Sum_probs=136.9
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEEC---CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSR---DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~---Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
|+.+|.... ..+.+..|...+.+.+|+|||+ |+..+. +..|.+||+.++. ...+..+.+.+.+..|+|+
T Consensus 184 l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 184 LAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------RELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc------EEEeecCCCcccCcEECCC
Confidence 345665443 3356778888999999999998 777653 4689999998664 2234456667788999999
Q ss_pred CCCCCCcEEEEEeCCCe--EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCC--eEEEEECC-ceeEEeec
Q 004329 77 NEEFPEGGLVSGGMDTM--VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDS--TLKRWRKG-KLVEFWEA 148 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~--I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~v~vwd~~-~~~~~~~~ 148 (760)
+.. ++++.+.++. |++||+.+++. ..+..+........|+ ++.++..+ .+| .|++||.. .....+..
T Consensus 257 G~~----la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 257 GRK----VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred CCE----EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 984 3456666655 77889887765 3455555555666776 45566555 333 46666653 23333433
Q ss_pred CCcCeEEEEEeCCCc-EEEEECC---CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeC-C-----CeEEEEe
Q 004329 149 HNAPIQTVIRIPSGE-IVSGSSD---TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASH-D-----CTIRLWA 216 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l~tgs~d---g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-d-----g~I~iwd 216 (760)
+...+....|+|+|+ ++..+.+ ..|.+||... ..+.+. +...+....|+|++. ++..+. . ..+.++|
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 444556677888887 4443332 2566677432 223222 223466778888766 333332 2 2566777
Q ss_pred cCCceEEEeecCCCcEEEEEEeC
Q 004329 217 LTGQVLMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~v~~~p 239 (760)
+++.....+. ....+...+|+|
T Consensus 411 l~g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 411 LTGRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCceEEcc-CCCCccCcccCC
Confidence 7666555443 233455555655
No 232
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=8.5e-11 Score=121.62 Aligned_cols=272 Identities=15% Similarity=0.256 Sum_probs=187.3
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC--ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK--RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
.+.+.||+..|+.++-..+.. ++++|.|++|++|.+..... ....+..++..|+.+|.++.|..+.. ..+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-------~i~ 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-------SIA 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-------eee
Confidence 356889999999997665555 99999999999999874432 23346778889999999999998876 345
Q ss_pred eCCCeEEEEECCCCceEEEEe-----CCCccEEEEEecCCe--EEEEECCCeEEEEECCceeE--Ee-----ecCCcCeE
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQ-----GHKLQVTGVTLDNED--IVSSSVDSTLKRWRKGKLVE--FW-----EAHNAPIQ 154 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~-----~h~~~V~~l~~~~~~--l~sgs~dg~v~vwd~~~~~~--~~-----~~~~~~v~ 154 (760)
+.||-|++||.--++++..+. +..+.|.|+---+.. ++.++...+|+++|.+.+.. .+ .+...-++
T Consensus 801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 678999999998777655332 223445555432333 34447889999999864332 22 23456688
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCc--eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEE-Ee-cCCceEEEeecCC
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRL-WA-LTGQVLMEMVGHT 229 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~i-wd-~~~~~~~~~~~h~ 229 (760)
++++.+.|. ++++-..|.|.+.|.++. +..+.........++--.+..++....|.++.+ |- ++|....+.....
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 999999877 888889999999996643 445554444444455433555888888999988 87 4554444443332
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEeC---------CceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEE
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWKD---------GVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRI 292 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~---------~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~v 292 (760)
.+..-+. .-| .+++......+.+|.+ -+.++.-..++..++++..|-+. +++|.+.|.|++
T Consensus 961 epahflq--svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhhh--ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2221111 123 5778888888889861 12233334788999999999777 999999999876
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=2.9e-09 Score=104.94 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=177.0
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC------------CCeEEEEEeCCCCCCCCcEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT------------SFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~l 85 (760)
.+-|.+|.|...|. |+||..+|.|.++.-+......+.....++.|. ..|+.+.|.+++.. ..+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~---a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL---AEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc---cEE
Confidence 45788999999888 999999999999976533222233344444443 46889999998863 368
Q ss_pred EEEeCCCeEEEEECCCCceEE-----EEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEe-ecCCcCeEEEEEe
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQ-----TLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFW-EAHNAPIQTVIRI 159 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~-----~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~v~~v~~~ 159 (760)
+..+.|.+|++|.+....... ..++....++++..- +.+..|-.+- ..+.+.+ ..|...|.++.+.
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p----~~~~~~~~ve----a~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP----VEGRHDLEVE----ASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeece----eeccccceee----eeeeeeccccceeEeeeeeec
Confidence 888999999999986543211 011222333333221 0011110000 0122222 3688889999999
Q ss_pred CCCcEEEEECCCcEEEEeCCCceEE-----eecC-----CCceEEEEEeC--CCeEEEEeCCCeEEEEecCCceEE----
Q 004329 160 PSGEIVSGSSDTTIKLWKGKKCAQT-----FVGH-----TDTVRGLSVMP--GVGIISASHDCTIRLWALTGQVLM---- 223 (760)
Q Consensus 160 ~~~~l~tgs~dg~i~iwd~~~~~~~-----~~~h-----~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~~~~~~~---- 223 (760)
.|+..+....|=.|.+|++...-+. ++.+ +..|++..|+| .+.|+-.+..|+|++.|++...+.
T Consensus 174 sD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 174 SDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred CccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 9999877888999999985532222 2222 35688999999 344888999999999998632211
Q ss_pred -Eee------------cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---CCceEEEEe-c------------CCcE---
Q 004329 224 -EMV------------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-H------------PGCV--- 270 (760)
Q Consensus 224 -~~~------------~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~-~------------~~~v--- 270 (760)
.+. +--..|..+.|+++| ++++-. =-+|++|| ...++.+++ | ...|
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 111 112467889999999 666543 36799999 455565554 2 1222
Q ss_pred EEEEEccCCc-EEEEEcCCcEEEEeCCCCee
Q 004329 271 WDAKFLENGD-IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 271 ~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~ 300 (760)
..++|+.++. ++||+.....++|+...|..
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 5578888877 89999999999999765543
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.16 E-value=2.4e-09 Score=103.87 Aligned_cols=116 Identities=16% Similarity=0.316 Sum_probs=88.5
Q ss_pred CCCceEEEEEeCCCe-EE--EEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeC---CCcEEEEe--CC
Q 004329 188 HTDTVRGLSVMPGVG-II--SASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK--DG 258 (760)
Q Consensus 188 h~~~V~~l~~~~~~~-l~--s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~---Dg~I~iwd--~~ 258 (760)
..++|.+++|+|++. |+ .|..++.|.+||++++.+..+. ...+..+.|+|+| ++++++. .|.|.+|| ..
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 345799999999665 44 3456789999999988887764 5677899999999 8887764 46799999 55
Q ss_pred ceEEEEecCCcEEEEEEccCCc-EEEEEc------CCcEEEEeCCCCeeechhhhh
Q 004329 259 VCVQSIEHPGCVWDAKFLENGD-IVTACS------DGVTRIWTVHSDKVADSLELE 307 (760)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~~~g~-lvt~~~------dg~I~vw~~~~~~~~~~~~~~ 307 (760)
+.+....|.. ++.++|+|+|+ +++++. |..++||++. |+++.....+
T Consensus 136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~~~ 189 (194)
T PF08662_consen 136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKPFD 189 (194)
T ss_pred EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecchh
Confidence 6666666665 68999999999 666554 7889999985 5565554443
No 235
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=3.5e-08 Score=107.34 Aligned_cols=277 Identities=11% Similarity=0.065 Sum_probs=168.3
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
+.+|..+.+...+..-......+... .++.++.++.||.+..+|..+++. ...... ...+.+.-...+
T Consensus 78 ~a~d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~-----~W~~~~-~~~~~~~p~v~~----- 145 (377)
T TIGR03300 78 VALDAETGKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKE-----LWRAKL-SSEVLSPPLVAN----- 145 (377)
T ss_pred EEEEccCCcEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcE-----eeeecc-CceeecCCEEEC-----
Confidence 45677777777766544332223333 355688889999999999987762 111111 122221111112
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE-----EEEEecCCeEEEEECCCeEEEEECC--ceeEEeecC-C---
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV-----TGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAH-N--- 150 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~-~--- 150 (760)
+.++.++.+|.++.||.++|+.+.......... .+....++.++.++.+|.+..+|.. +.+...... .
T Consensus 146 -~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 146 -GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred -CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 257888889999999999999888776433221 1222345678888899999999864 333322110 0
Q ss_pred c------CeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEE
Q 004329 151 A------PIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLM 223 (760)
Q Consensus 151 ~------~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~ 223 (760)
. .+.+-....++.+++++.+|.++.||.......+............. ++.++.++.||.+..+|. +|+.+.
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVD-DNRLYVTDADGVVVALDRRSGSELW 303 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEe-CCEEEEECCCCeEEEEECCCCcEEE
Confidence 0 01111111256688888999999999765443332211112222222 677888899999999997 566665
Q ss_pred EeecCCC-cEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCC-cEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 224 EMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 224 ~~~~h~~-~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
....... ...+.... ++.+++++.+|.++++| +++.+..+...+ .++.--...++.++.++.||.|..|
T Consensus 304 ~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 304 KNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 5432211 22222222 34888999999999999 688888777443 4444333446679999999999876
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.2e-09 Score=116.97 Aligned_cols=225 Identities=11% Similarity=0.023 Sum_probs=134.3
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.+|.. ....+.+..|...+.+.+|+|||+ |+..+.+ ..|.+||+.++.. ..+....+.+.+..|+|++
T Consensus 179 ~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 179 QISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE------EEeecCCCCccceEECCCC
Confidence 445553 333455667888999999999998 7776643 3599999986651 2233344556789999999
Q ss_pred CCCCCcEEEEEeCCCeEEEE--ECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC-CCeEEEEE--CC-ceeEEeecC
Q 004329 78 EEFPEGGLVSGGMDTMVLVW--DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV-DSTLKRWR--KG-KLVEFWEAH 149 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vw--d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~v~vwd--~~-~~~~~~~~~ 149 (760)
.. ++++.+.+|...+| |..++. ...+..+........|+ ++.++..+. +|...+|. .. .....+..+
T Consensus 252 ~~----la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~ 326 (427)
T PRK02889 252 RT----LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT 326 (427)
T ss_pred CE----EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence 84 24566778776655 454444 44455555555566776 455655543 46666663 32 222222222
Q ss_pred CcCeEEEEEeCCCc-EEEEECCC---cEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEEeCC-C--eEEEEecCCc
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSDT---TIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISASHD-C--TIRLWALTGQ 220 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~dg---~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~s~d-g--~I~iwd~~~~ 220 (760)
........|+|+|+ ++..+.++ .|.+||.... .+.+.. ........|+|++. ++.++.+ | .+.+.+.++.
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 23334567888887 44444433 5888885432 233322 23346778888776 4444433 3 2555566777
Q ss_pred eEEEeecCCCcEEEEEEeC
Q 004329 221 VLMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p 239 (760)
....+..+.+.+...+|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 6666666666677777776
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.4e-08 Score=103.74 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=181.1
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC-----CCe
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM-----DTM 93 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~-----dg~ 93 (760)
...++..+++++|++...+.+..++|++..+.. ...+.. ...+.++.|+|.+..+..---.+... .-.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~-----~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK-----VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc-----EEEEec--cceeeeeeecccccccccccccccccCCCCCCCc
Confidence 455778899999998888889999999987554 222222 22788999999887320000011112 234
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCce-eEEeecCCcCeEEEEEeCCCc---EE---
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKL-VEFWEAHNAPIQTVIRIPSGE---IV--- 165 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~~~v~~v~~~~~~~---l~--- 165 (760)
+.+|+.+++.....+......-++..|+ ++.++.--..+.+++|+.+.. ...-+.|...+..+.++|.+. ++
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 7799999866555555433333678887 555665566778999988642 222345677888999998744 32
Q ss_pred --EEECCCcEEEEeCCCc-e------EEeecCCCceEEEEEeCCCe--EE--EEeCC---------CeEEEEecCCceEE
Q 004329 166 --SGSSDTTIKLWKGKKC-A------QTFVGHTDTVRGLSVMPGVG--II--SASHD---------CTIRLWALTGQVLM 223 (760)
Q Consensus 166 --tgs~dg~i~iwd~~~~-~------~~~~~h~~~V~~l~~~~~~~--l~--s~s~d---------g~I~iwd~~~~~~~ 223 (760)
..+.-..+++|..... . ++| ....-..+.|++.+. |+ +..-| .++++.+++|....
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~ 264 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS 264 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence 2445568999974411 1 111 112223567777443 33 33333 35888888877666
Q ss_pred EeecCCCcEEEEEEeCCC---eEEEEeCCCcEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEc---CCcEEEEeC
Q 004329 224 EMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACS---DGVTRIWTV 295 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~---dg~I~vw~~ 295 (760)
.-....++|+++.|+|++ -++-|-.-..+.|+| .+..+..+. +++-+++-|+|.|+ ++.+|- .|.+-|||+
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 555668999999999999 344455678899999 666655443 55778899999999 444444 699999999
Q ss_pred CCCeeechhh
Q 004329 296 HSDKVADSLE 305 (760)
Q Consensus 296 ~~~~~~~~~~ 305 (760)
.+.+++....
T Consensus 344 ~n~K~i~~~~ 353 (566)
T KOG2315|consen 344 PNRKLIAKFK 353 (566)
T ss_pred cchhhccccc
Confidence 9877766544
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.9e-08 Score=109.94 Aligned_cols=207 Identities=14% Similarity=0.031 Sum_probs=140.5
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC---CCeEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV---DSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~---dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
..|.+||.. +...+.+..|...+.+..|+ ++.++..+. +..|.+||.. .....+..+.+.+.+..|+|+|+ +
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 478899985 44445666788899999997 455666653 4679999975 33344555666777889999997 4
Q ss_pred -EEEECCCc--EEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeC-CC--eEEEEecCCceEEEeecCCCcEEEEE
Q 004329 165 -VSGSSDTT--IKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASH-DC--TIRLWALTGQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 165 -~tgs~dg~--i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-dg--~I~iwd~~~~~~~~~~~h~~~v~~v~ 236 (760)
++.+.++. |++||... ..+.+..+........|+|++. ++..+. +| .|++||+.+.....+..+...+....
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPV 340 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeE
Confidence 45666665 66667543 3455666666677899999876 655553 33 68888888776666665566677789
Q ss_pred EeCCC-eEEEEeCC---CcEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEc-C-----CcEEEEeCCCCe
Q 004329 237 SHASG-LIVSGSED---RFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACS-D-----GVTRIWTVHSDK 299 (760)
Q Consensus 237 ~~p~~-~l~s~s~D---g~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~-d-----g~I~vw~~~~~~ 299 (760)
|+|+| .++..+.+ ..|.+|| .+...+.+.....+....|+|||+ ++..+. . ..+.+++++.+.
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 99999 66655433 3577888 444455555544677889999999 444443 2 246677765543
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.7e-08 Score=109.58 Aligned_cols=224 Identities=10% Similarity=0.067 Sum_probs=142.6
Q ss_pred eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe---CCCeEEEEECCCCceEEEEeCCCccEEE
Q 004329 41 TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG---MDTMVLVWDLGSGEKVQTLQGHKLQVTG 117 (760)
Q Consensus 41 ~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs---~dg~I~vwd~~~~~~~~~l~~h~~~V~~ 117 (760)
.|.+||.+... ...+..+...+.+.+|+|+++. ++..+ .+..|++|++.+++.... ......+..
T Consensus 180 ~l~~~d~dg~~------~~~lt~~~~~~~~p~wSPDG~~-----la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYN------QFVVHRSPQPLMSPAWSPDGSK-----LAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCC------CEEeecCCCceeeeEEcCCCCE-----EEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCC
Confidence 68888887333 2334456778999999999984 44432 345799999988764332 222233445
Q ss_pred EEec--CCeEEEE-ECCC--eEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EEEEEC-CCcEEEE--eCCC-ceEEee
Q 004329 118 VTLD--NEDIVSS-SVDS--TLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IVSGSS-DTTIKLW--KGKK-CAQTFV 186 (760)
Q Consensus 118 l~~~--~~~l~sg-s~dg--~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~-dg~i~iw--d~~~-~~~~~~ 186 (760)
..|+ ++.++.. +.+| .|++||.. .....+..+...+....|+|+|+ ++..+. ++...+| |... ..+.+.
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 6776 4455543 4455 47788874 33344444455677899999998 555554 3455555 5432 334444
Q ss_pred cCCCceEEEEEeCCCe-EEEEeCC---CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCc---EEEEe-C
Q 004329 187 GHTDTVRGLSVMPGVG-IISASHD---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF---AKIWK-D 257 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~~-l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~---I~iwd-~ 257 (760)
.+........|+|++. ++..+.+ ..|.+||+.+.....+... .......|+||| .++.++.++. +.+++ +
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 4445566788999776 5554433 3588899866555554422 234467899999 7777776664 66667 6
Q ss_pred CceEEEEe-cCCcEEEEEEcc
Q 004329 258 GVCVQSIE-HPGCVWDAKFLE 277 (760)
Q Consensus 258 ~~~~~~~~-~~~~v~~v~~~~ 277 (760)
+...+.+. |++.+...+|+|
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCcccCC
Confidence 66666665 677888888887
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.8e-08 Score=107.82 Aligned_cols=274 Identities=13% Similarity=0.191 Sum_probs=181.3
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC----------ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK----------RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~----------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
......|+.|+.+.. ++.|+.||.+++-.+.+... .....-+++.||...|.-+.|.....+ +-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-----LT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-----LT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-----cc
Confidence 345678999996544 99999999999998865432 112234578899999999999988874 78
Q ss_pred EEeCCCeEEEEECCCCceEEEE--eCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEEeCC
Q 004329 87 SGGMDTMVLVWDLGSGEKVQTL--QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~l--~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~ 161 (760)
+...+|.|.+|-+-.|.....+ ....+.|.+++|+ +..+...-.||.|.+=... ..+.--.-.......+.|++|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeeccc
Confidence 8899999999998766433222 2345567777776 4456666667666554332 111111111112336889999
Q ss_pred Cc-EEEEECCCcEEEEeCCC---------ceEE----eecCCCceEEEEEeC--------CCe-EEEEeCCCeEEEEecC
Q 004329 162 GE-IVSGSSDTTIKLWKGKK---------CAQT----FVGHTDTVRGLSVMP--------GVG-IISASHDCTIRLWALT 218 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~~---------~~~~----~~~h~~~V~~l~~~~--------~~~-l~s~s~dg~I~iwd~~ 218 (760)
.+ ++.+-..|.+++||... +... +......|-.++|.. +.. ++.|-..|.+.+-.-.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 87 56778889999998432 1111 122233466667653 444 8899999998887643
Q ss_pred CceEEEeecCCCcEEEEEEeCCC-eEEEEeCC---------CcEEEEe-CCceEEEEecCC-cEEEEEEccCCcEEEEEc
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---------RFAKIWK-DGVCVQSIEHPG-CVWDAKFLENGDIVTACS 286 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~D---------g~I~iwd-~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~ 286 (760)
...--.+......+....|+++| .|+.+|.| +.|++|. -|..+.+++.++ .|++++|-..|--++-.-
T Consensus 248 ND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 248 NDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 32222223334778899999999 88888764 3677887 788888888776 899999977665444444
Q ss_pred CCcEEEEeCC
Q 004329 287 DGVTRIWTVH 296 (760)
Q Consensus 287 dg~I~vw~~~ 296 (760)
|+.|.+=+++
T Consensus 328 dsfiyfanIR 337 (1189)
T KOG2041|consen 328 DSFIYFANIR 337 (1189)
T ss_pred cceEEEEeec
Confidence 5555554443
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=6.4e-07 Score=95.84 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=174.8
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
+++-..+|.|.+.|..+.+ ....+......-..+.|+|++. ++++++.||.|.++|+.+++.+.+++...
T Consensus 9 ~V~~~~~~~v~viD~~t~~-----~~~~i~~~~~~h~~~~~s~Dgr-----~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK-----VVARIPTGGAPHAGLKFSPDGR-----YLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S-----EEEEEE-STTEEEEEE-TT-SS-----EEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred EEEecCCCEEEEEECCCCe-----EEEEEcCCCCceeEEEecCCCC-----EEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 4566678999999988655 5556655444445578899988 57888899999999999999999988544
Q ss_pred ccEEEEEec--CCeEEEE-ECCCeEEEEECC--ceeEEeecC-------CcCeEEEEEeCCCc-EEEEEC-CCcEEEEeC
Q 004329 113 LQVTGVTLD--NEDIVSS-SVDSTLKRWRKG--KLVEFWEAH-------NAPIQTVIRIPSGE-IVSGSS-DTTIKLWKG 178 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~sg-s~dg~v~vwd~~--~~~~~~~~~-------~~~v~~v~~~~~~~-l~tgs~-dg~i~iwd~ 178 (760)
. ..+++++ +++++++ ...+.+.++|.. +.+..+... ...+.++..++.+. ++..-. .+.|.+.|.
T Consensus 79 ~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 79 N-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp E-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred C-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 3 4567775 6665544 578999999975 445554432 34577787777766 555544 477877784
Q ss_pred CCc---eEEeecCCCceEEEEEeCCCe-E-EEEeCCCeEEEEecCCce-EEEee----cCCCcEEEEEEeCC--------
Q 004329 179 KKC---AQTFVGHTDTVRGLSVMPGVG-I-ISASHDCTIRLWALTGQV-LMEMV----GHTAIVYSIDSHAS-------- 240 (760)
Q Consensus 179 ~~~---~~~~~~h~~~V~~l~~~~~~~-l-~s~s~dg~I~iwd~~~~~-~~~~~----~h~~~v~~v~~~p~-------- 240 (760)
... ...............|.|+++ + ++...+..|-++|..... +..+. .|..+...+ .+|.
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~ 236 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATS 236 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeec
Confidence 432 223333445677889999876 4 445567789999975443 33322 234444433 2222
Q ss_pred --C-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEE----EcCCcEEEEeCCCCeeechhhhhhhh
Q 004329 241 --G-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTA----CSDGVTRIWTVHSDKVADSLELEAYA 310 (760)
Q Consensus 241 --~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~----~~dg~I~vw~~~~~~~~~~~~~~~~~ 310 (760)
+ ..++.-....+.+|| ..+.++.+...+.-.-+..+|+++ +.+. ...+.|.++|.++.+....+....
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-- 314 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-- 314 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH--
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC--
Confidence 2 222222223455676 667888888766558888899999 4443 336899999999987766554221
Q ss_pred hcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCce-EEEEEeccccc
Q 004329 311 SELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNG-VAYSWDMKEQK 367 (760)
Q Consensus 311 ~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~-~~~~w~~~~~~ 367 (760)
+...+....+++|....+...+.. .+.++|....+
T Consensus 315 ----------------------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 315 ----------------------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp ----------------------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ----------------------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 111445556667766555554434 88888865543
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=6.5e-09 Score=116.42 Aligned_cols=172 Identities=23% Similarity=0.358 Sum_probs=140.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEE--EEEe--c--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT--GVTL--D--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~--~l~~--~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
.++.++.+..+.+||...+.....+........ ++-+ + .-++++|+.-+.+.+|+.. +.-..+.+|.+.+.+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~ 180 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS 180 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence 589999999999999988776666553322111 1111 2 3349999999999999763 222268899999999
Q ss_pred EEEeCCCc-EEEEECCCcEEEEeCCCce---EEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCC-C
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWKGKKCA---QTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHT-A 230 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd~~~~~---~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~-~ 230 (760)
+.++.+|+ +++.|.|.++|+|++.... ...-+|+.+|..++++|+ .+++++.|.+.++|+.++..+..+.+|. .
T Consensus 181 i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~ 259 (967)
T KOG0974|consen 181 IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGK 259 (967)
T ss_pred EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhc
Confidence 99999988 8899999999999855422 255689999999999988 9999999999999999999999988886 4
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+..++..++. ..++++.|+.+++|+
T Consensus 260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 260 GIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ceeEEEEcCCceEEEeeccCcchhhhh
Confidence 78899998888 999999999999998
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=8.7e-08 Score=105.65 Aligned_cols=225 Identities=13% Similarity=0.111 Sum_probs=138.0
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC---CCeEEEEECCCCceEEEEeCCCccEE
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM---DTMVLVWDLGSGEKVQTLQGHKLQVT 116 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~---dg~I~vwd~~~~~~~~~l~~h~~~V~ 116 (760)
..|.+||.+ +. ....+..+...+.+.+|+|+++. ++..+. ...|++||+.+++... +....+.+.
T Consensus 176 ~~L~~~D~d-G~-----~~~~l~~~~~~v~~p~wSPDG~~-----la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~ 243 (427)
T PRK02889 176 YQLQISDAD-GQ-----NAQSALSSPEPIISPAWSPDGTK-----LAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNS 243 (427)
T ss_pred cEEEEECCC-CC-----CceEeccCCCCcccceEcCCCCE-----EEEEEccCCCcEEEEEECCCCCEEE-eecCCCCcc
Confidence 356677764 32 22344567788999999999973 555543 2469999999887543 333444556
Q ss_pred EEEec--CCeEE-EEECCCeEEEEE--CC-ceeEEeecCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEe--CC-CceEEe
Q 004329 117 GVTLD--NEDIV-SSSVDSTLKRWR--KG-KLVEFWEAHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWK--GK-KCAQTF 185 (760)
Q Consensus 117 ~l~~~--~~~l~-sgs~dg~v~vwd--~~-~~~~~~~~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd--~~-~~~~~~ 185 (760)
+..|+ ++.++ +.+.+|...+|. .. .....+..+........|+|+|+ ++..+ .+|...+|. .. ...+.+
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 77887 44554 567788877774 32 33445555555566788999998 55444 356666664 22 222333
Q ss_pred ecCCCceEEEEEeCCCe-EEEEeCCC---eEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeC-CCc--EEEEe-
Q 004329 186 VGHTDTVRGLSVMPGVG-IISASHDC---TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRF--AKIWK- 256 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~-l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~-Dg~--I~iwd- 256 (760)
..+........|+|++. ++..+.++ .|.+||+.+.....+..+ .......|+|+| .++..+. .|. +.+.+
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 32333345678999776 66555544 699999865555444432 344678999999 5555443 433 33334
Q ss_pred CCceEEEEe-cCCcEEEEEEcc
Q 004329 257 DGVCVQSIE-HPGCVWDAKFLE 277 (760)
Q Consensus 257 ~~~~~~~~~-~~~~v~~v~~~~ 277 (760)
.+...+.+. +.+.+...+|+|
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCceEEeecCCCCCCCCccCC
Confidence 555555554 445667777776
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=7.7e-08 Score=106.40 Aligned_cols=205 Identities=14% Similarity=0.045 Sum_probs=131.0
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC---CeEEEEECCc-eeEEeecCCcCeEEEEEeCCCc-E
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD---STLKRWRKGK-LVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d---g~v~vwd~~~-~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
..|.+||... ...+.+..+...+.+..|+ ++.++.++.+ ..|.+||... ....+..+.+...+..|+|+|. +
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 4689999864 4445566677788888887 5567777643 4688998752 2233334444556789999997 4
Q ss_pred -EEEECCC--cEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEe-CCCe--EEEEecCCceEEEeecCCCcEEEEE
Q 004329 165 -VSGSSDT--TIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISAS-HDCT--IRLWALTGQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 165 -~tgs~dg--~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg~--I~iwd~~~~~~~~~~~h~~~v~~v~ 236 (760)
++.+.+| .|++||... ..+.+..+.......+|+|++. ++.++ .+|. |.++|+.+.....+..+.......+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~ 342 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARAS 342 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEE
Confidence 3556665 588888643 3445555655567889999876 65555 3444 6666765544444443444555789
Q ss_pred EeCCC-eEEEEeCC-C--cEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEc---CCcEEEEeCCC
Q 004329 237 SHASG-LIVSGSED-R--FAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACS---DGVTRIWTVHS 297 (760)
Q Consensus 237 ~~p~~-~l~s~s~D-g--~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~---dg~I~vw~~~~ 297 (760)
|+|+| .++..+.+ + .|.+|| .+.....+.+........|+|||+ ++..+. .+.|.+++.+.
T Consensus 343 ~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 343 VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 99999 66654433 2 588999 333334555544556779999999 554444 23566777654
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=3.6e-09 Score=123.57 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=157.2
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec--CCeEEEEECCCeEEE
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD--NEDIVSSSVDSTLKR 136 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~v~v 136 (760)
.++.+-..|.++.-+|... +.++|+.||.+++|....++.+..++ .....|+.+.|+ ++.+..+..||.+.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~-----~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDP-----YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred EeecccCceeeecCCCCCc-----eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceee
Confidence 4455667788888778776 67999999999999998888877765 233788888886 788999999999999
Q ss_pred EECC-ceeEEeecCCcCeEEEEEeCCCcEEEE---ECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe-EEEEeC
Q 004329 137 WRKG-KLVEFWEAHNAPIQTVIRIPSGEIVSG---SSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG-IISASH 208 (760)
Q Consensus 137 wd~~-~~~~~~~~~~~~v~~v~~~~~~~l~tg---s~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~-l~s~s~ 208 (760)
|..+ ++...++.|......+.|.... ++++ +.++.+.+||... ....-+.|.+.++++++.|... +++|+.
T Consensus 2278 ~q~~pk~~~s~qchnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2278 WQASPKPYTSWQCHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cccCCcceeccccCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 9876 6777788999999888888632 4443 3578999999432 1112278999999999999776 999999
Q ss_pred CCeEEEEecCCceEE-EeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcE--------EEEEEcc
Q 004329 209 DCTIRLWALTGQVLM-EMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCV--------WDAKFLE 277 (760)
Q Consensus 209 dg~I~iwd~~~~~~~-~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v--------~~v~~~~ 277 (760)
+|.|++||++.+.+. .+.. +....++++|+..|.++||+ ....+.++.+...- ..+-..+
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~ 2427 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ 2427 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc
Confidence 999999998655432 2222 33223999999999999999 33444444321111 2233344
Q ss_pred CCcEEEEEcCCc
Q 004329 278 NGDIVTACSDGV 289 (760)
Q Consensus 278 ~g~lvt~~~dg~ 289 (760)
.+++.+++.||+
T Consensus 2428 ~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2428 CNRIFSCGADGT 2439 (2439)
T ss_pred CceEEEecCCCC
Confidence 555777777763
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.98 E-value=6.5e-08 Score=106.94 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=131.4
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.+|..... .+.+..|...+.+.+|+|+|+ |+.++.+ ..|++||+.++. ...+..+.+.+.+++|+|++
T Consensus 173 ~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~------~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 173 QVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ------REKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred EEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC------EEEeecCCCCccceEECCCC
Confidence 445554333 355666777899999999999 7766644 479999998664 12233455667789999998
Q ss_pred CCCCCcEEEEEeCCC--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC-CC--eEEEEECC-ceeEEeecC
Q 004329 78 EEFPEGGLVSGGMDT--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV-DS--TLKRWRKG-KLVEFWEAH 149 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg--~v~vwd~~-~~~~~~~~~ 149 (760)
.. ++++.+.++ .|++||+.+++.. .+..+........|+ ++.++..+. ++ .|.+++.. .....+..+
T Consensus 246 ~~----l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~ 320 (417)
T TIGR02800 246 SK----LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR 320 (417)
T ss_pred CE----EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 73 244555544 5889999877543 333444444455665 555665554 33 46666653 223344445
Q ss_pred CcCeEEEEEeCCCc-EEEEECCC---cEEEEeCCCceEEeecCCCceEEEEEeCCCe-EEEEeCCC---eEEEEecCCce
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSDT---TIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDC---TIRLWALTGQV 221 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~dg---~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg---~I~iwd~~~~~ 221 (760)
...+....|+|++. ++.++.++ .|.+||...................|+|++. ++..+.++ .+.+.+.++..
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 55666778888887 55555554 6777775542222222222334567888665 55554443 35555666666
Q ss_pred EEEeecCCCcEEEE
Q 004329 222 LMEMVGHTAIVYSI 235 (760)
Q Consensus 222 ~~~~~~h~~~v~~v 235 (760)
...+..+.+.+..+
T Consensus 401 ~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 401 RARLPLGNGDVREP 414 (417)
T ss_pred eeECCCCCCCcCCC
Confidence 65554444444433
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.6e-07 Score=98.88 Aligned_cols=264 Identities=13% Similarity=0.139 Sum_probs=169.5
Q ss_pred CEEEEEEcCCCe-EEEE-----ECC-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 21 DVRGICVCDNVG-IATS-----SRD-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tg-----s~D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
.++++.|+|-+. |.|- ..| -.+.+|++.++.. .. ......... ++..|+.+.. +++--
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~-~s---~~q~k~Q~~-W~~qfs~dEs------l~arl 143 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQ-RS---QIQKKMQNG-WVPQFSIDES------LAARL 143 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeecccee-hh---heehhhhcC-cccccccchh------hhhhh
Confidence 678888998887 4432 222 2466888886331 11 111112222 5888888876 55555
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEecCC-e---EEE-----EECCCeEEEEECCce-----eEEeecCCcCeEE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE-D---IVS-----SSVDSTLKRWRKGKL-----VEFWEAHNAPIQT 155 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~-~---l~s-----gs~dg~v~vwd~~~~-----~~~~~~~~~~v~~ 155 (760)
..+.+++|+..+.+... -+-|...++.+.++.+ . +++ ++.-+.|++|..... +..-.-....-..
T Consensus 144 v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvq 222 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQ 222 (566)
T ss_pred hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeE
Confidence 67889999987643322 2235677888888733 2 322 345567999975411 1111111222335
Q ss_pred EEEeCCCc--EEEEE--CC---------CcEEEEeCCCceEEeec-CCCceEEEEEeCCCe---EEEEeCCCeEEEEecC
Q 004329 156 VIRIPSGE--IVSGS--SD---------TTIKLWKGKKCAQTFVG-HTDTVRGLSVMPGVG---IISASHDCTIRLWALT 218 (760)
Q Consensus 156 v~~~~~~~--l~tgs--~d---------g~i~iwd~~~~~~~~~~-h~~~V~~l~~~~~~~---l~s~s~dg~I~iwd~~ 218 (760)
+.|.+.|. |+.++ -| .+++++++......+.. ..++|.++.|+|.+. ++-|-.-..+.|+|++
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence 67777665 33222 23 36777776644444443 479999999999775 5566778899999999
Q ss_pred CceEEEeecCCCcEEEEEEeCCC-eEEEEeC---CCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEc-----
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACS----- 286 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~---Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~----- 286 (760)
+.++..+. +++-+++-|+|.| +++.+|- -|.+-||| +.+++..+...+ -+-+.|+|||. |+|++.
T Consensus 303 ~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 303 GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEE
Confidence 99988764 5677889999999 6666554 47899999 555665555443 35578999999 666665
Q ss_pred -CCcEEEEeCCCCe
Q 004329 287 -DGVTRIWTVHSDK 299 (760)
Q Consensus 287 -dg~I~vw~~~~~~ 299 (760)
|..++||+.....
T Consensus 380 vdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 380 VDNGIKIWHYTGSL 393 (566)
T ss_pred ecCCeEEEEecCce
Confidence 7889999986544
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=6e-08 Score=94.04 Aligned_cols=231 Identities=12% Similarity=0.143 Sum_probs=154.0
Q ss_pred CCCEEEEEEc---CCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCC---CCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 19 EDDVRGICVC---DNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH---TSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 19 ~~~V~~v~~~---~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
++.+..+.|. .++. ++-+-.+|.|.++....... .....-+..- .....++.|++.+. -++++..
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s--s~~L~~ls~~ki~~~~~lslD~~~~~~-----~i~vs~s 141 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES--SVHLRGLSSKKISVVEALSLDISTSGT-----KIFVSDS 141 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeecccee--eeeecccchhhhhheeeeEEEeeccCc-----eEEEEcC
Confidence 3455666665 2233 67777788898887653221 0011111111 11245778888887 3889999
Q ss_pred CCeEEEEECCCCce--EEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC---ceeEE-eecCCcCeEEEEEeCC
Q 004329 91 DTMVLVWDLGSGEK--VQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG---KLVEF-WEAHNAPIQTVIRIPS 161 (760)
Q Consensus 91 dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~---~~~~~-~~~~~~~v~~v~~~~~ 161 (760)
+|.+.+-+...... ++..+.|.-+.+...|+ ++.+++|+.|+.+..||++ +.+.. .+.|...|.++.-+|.
T Consensus 142 ~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 142 RGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred CCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC
Confidence 99999666555543 44788999999999996 6669999999999999998 33333 4578899999988876
Q ss_pred C-c-EEEEECCCcEEEEeCCCceEEeec--CCCceEEEEEeCCC--eEEEEeCCCeEEEEecC---Cc---eEEEeecCC
Q 004329 162 G-E-IVSGSSDTTIKLWKGKKCAQTFVG--HTDTVRGLSVMPGV--GIISASHDCTIRLWALT---GQ---VLMEMVGHT 229 (760)
Q Consensus 162 ~-~-l~tgs~dg~i~iwd~~~~~~~~~~--h~~~V~~l~~~~~~--~l~s~s~dg~I~iwd~~---~~---~~~~~~~h~ 229 (760)
. . +++|+.|..|++||.+...+.+.. -.+.|+.+..+|.. .++.++.-.-.+|.+.+ .+ .......|.
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 3 3 889999999999998754443322 34789999999933 34444444445666643 22 334455788
Q ss_pred CcEEEEEEeCCC-eEEEEe-CCCcEE-EEe
Q 004329 230 AIVYSIDSHASG-LIVSGS-EDRFAK-IWK 256 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s-~Dg~I~-iwd 256 (760)
+-++.-.|.... .+++++ .|+.++ +|-
T Consensus 302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ceeeccccccccceeeeeeccccceeeeee
Confidence 888888885443 788765 466644 664
No 249
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=2.3e-06 Score=93.12 Aligned_cols=257 Identities=11% Similarity=0.078 Sum_probs=157.1
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 109 (760)
++.++.++.+|.+.-+|..+++. ................ ++ +.++.++.+|.++.+|..+|+.+....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~-----~W~~~~~~~~~~~p~v--~~-----~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR-----LWRVDLDERLSGGVGA--DG-----GLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE-----eeeecCCCCcccceEE--cC-----CEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 56689999999999999887762 2222211111111221 12 258889999999999999999887765
Q ss_pred CCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCe-----EEEEEeCCCcEEEEECCCcEEEEeCCCce
Q 004329 110 GHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI-----QTVIRIPSGEIVSGSSDTTIKLWKGKKCA 182 (760)
Q Consensus 110 ~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v-----~~v~~~~~~~l~tgs~dg~i~iwd~~~~~ 182 (760)
............++.++.++.+|.+..||.. +.+.......... .+... .++.++.++.++.+..+|.....
T Consensus 133 ~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 133 LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred cCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCC
Confidence 4332222233457788889999999999864 4444433222111 01111 23567788888999999865433
Q ss_pred EEeecC---C------Cc---e-EEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeC
Q 004329 183 QTFVGH---T------DT---V-RGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSE 248 (760)
Q Consensus 183 ~~~~~h---~------~~---V-~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~ 248 (760)
..+... . .. + .+..+ .++.++.++.+|.++.||. +|+.+..... .. ....... ++.++.++.
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~~~-~~~vyv~~~ 287 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPAVD-DNRLYVTDA 287 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCceEe-CCEEEEECC
Confidence 222110 0 00 1 01111 2567888899999999997 5666555431 11 1122222 347888889
Q ss_pred CCcEEEEe--CCceEEEEe-cCCc-EEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 249 DRFAKIWK--DGVCVQSIE-HPGC-VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 249 Dg~I~iwd--~~~~~~~~~-~~~~-v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
||.+..+| +++.+.... .... ..+... .++.+++++.+|.|++||..+++.+...
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999 566655442 2221 122222 2445889999999999999999877644
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.94 E-value=9.6e-08 Score=92.68 Aligned_cols=111 Identities=14% Similarity=0.285 Sum_probs=55.8
Q ss_pred ccEEEEEec--CCeEE--EEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEEC---CCcEEEEeCCCceEE
Q 004329 113 LQVTGVTLD--NEDIV--SSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSS---DTTIKLWKGKKCAQT 184 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~--sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~---dg~i~iwd~~~~~~~ 184 (760)
++|.+++|+ ++.++ .|..++.+.+||.. ......-+...+..+.|+|+|+ +++++. .|.|.+||.++....
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 356666665 33332 23345566666654 1122222344555666666665 334332 245666665544443
Q ss_pred eecCCCceEEEEEeCCCe-EEEEeC------CCeEEEEecCCceEEE
Q 004329 185 FVGHTDTVRGLSVMPGVG-IISASH------DCTIRLWALTGQVLME 224 (760)
Q Consensus 185 ~~~h~~~V~~l~~~~~~~-l~s~s~------dg~I~iwd~~~~~~~~ 224 (760)
...+...+..++|+|+++ +++++. |..++||+..|+.+..
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 333334456666666555 444432 5556666666655544
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=6.8e-09 Score=121.35 Aligned_cols=217 Identities=14% Similarity=0.194 Sum_probs=157.8
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
++.|-..|+++.-+|... .+||+.||.|++|....++ .+.++ ......|+.+.|+..|.+ +..+..||
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~-----~v~~~rt~g~s~vtr~~f~~qGnk-----~~i~d~dg 2273 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ-----QVVCFRTAGNSRVTRSRFNHQGNK-----FGIVDGDG 2273 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC-----eEEEeeccCcchhhhhhhcccCCc-----eeeeccCC
Confidence 344566788888788777 9999999999999987655 22222 223488999999999885 68888999
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEE---CCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSS---VDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IV 165 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs---~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~ 165 (760)
.+.+|... .++....+.|+.....+.|-+..+++.+ .++.+.+||+- ..-.....|.+.++++++.|..+ ++
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE
Confidence 99999986 6777788899999999888776666654 56789999864 22222378999999999999877 78
Q ss_pred EEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCc-eEEEee---cCCCcE----EEE
Q 004329 166 SGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQ-VLMEMV---GHTAIV----YSI 235 (760)
Q Consensus 166 tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~---~h~~~v----~~v 235 (760)
+|+.+|.|++||.++ ..+++.. +.....|++++..|.|+||+++.- .+..+. .|.+.. ..+
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~ 2423 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQI 2423 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCcee
Confidence 999999999999654 4444443 333455999999999999998643 222222 122111 233
Q ss_pred EEeCCCeEEEEeCCCc
Q 004329 236 DSHASGLIVSGSEDRF 251 (760)
Q Consensus 236 ~~~p~~~l~s~s~Dg~ 251 (760)
.+.+.+.+++|+.||+
T Consensus 2424 ~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2424 NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred eeccCceEEEecCCCC
Confidence 3344457888888874
No 252
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.3e-07 Score=94.08 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=125.1
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec---CCeEEEEECCCeEEEEECC
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG 140 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~ 140 (760)
+..+..++|++.-. .++++..|-.|++||-.. ++...++ .....|+|++|. ...++.|+.. -|.+|...
T Consensus 98 ~~dlr~~aWhqH~~-----~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s 170 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-----AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDS 170 (445)
T ss_pred hcceeeEeechhhh-----hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcC
Confidence 45678899998554 478999999999999876 4444444 356789999996 3346666654 58889432
Q ss_pred ------ce----------eEEeecCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEeCCC--ceEEeecCCCceEEEEEeCC
Q 004329 141 ------KL----------VEFWEAHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 141 ------~~----------~~~~~~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~ 200 (760)
.. +....+| .+|+++.|.+||. +++++ .|..|.+||... ++.......+.+.-+.|+|+
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred cccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 11 1112234 6899999999988 66655 567899999554 33323234567889999997
Q ss_pred Ce-EEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEE
Q 004329 201 VG-IISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAK 253 (760)
Q Consensus 201 ~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~ 253 (760)
+. +++++-|+..++|+.+. .......-..+.|...+|+|+| +|++++..-.++
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 76 99999999999996432 2222223334599999999999 666665554443
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=2.7e-07 Score=102.31 Aligned_cols=224 Identities=14% Similarity=0.087 Sum_probs=129.5
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
.+|..... .+.+..|...+.+..|+|||+ |+..+.+ ..|.+|++.++.. ..+....+.+....|+|+++
T Consensus 183 ~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 183 RSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------EEccCCCCCcCCeEECCCCC
Confidence 34544433 345666778899999999998 7666543 3688999986651 12222334456789999987
Q ss_pred CCCCcEEEEEeCCC--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCC--eEEEEECC-ceeEEeecCC
Q 004329 79 EFPEGGLVSGGMDT--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDS--TLKRWRKG-KLVEFWEAHN 150 (760)
Q Consensus 79 ~~~~~~l~sgs~dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~v~vwd~~-~~~~~~~~~~ 150 (760)
. ++++.+.+| .|++||+.+++.. .+..+........|+ ++.++..+ .+| .|.+++.. .....+....
T Consensus 256 ~----la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~ 330 (430)
T PRK00178 256 K----LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG 330 (430)
T ss_pred E----EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC
Confidence 4 244555555 6888899887653 344455555566776 45555554 334 45556653 2222222222
Q ss_pred cCeEEEEEeCCCc-EEEEE-CCC--cEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEEeC-C--CeEEEEecCCce
Q 004329 151 APIQTVIRIPSGE-IVSGS-SDT--TIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISASH-D--CTIRLWALTGQV 221 (760)
Q Consensus 151 ~~v~~v~~~~~~~-l~tgs-~dg--~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~s~-d--g~I~iwd~~~~~ 221 (760)
.......|+|+|. ++..+ .++ .|.+||.... .+.+. +........|+|++. ++..+. + ..+.+++.++..
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 2234567888887 43333 233 4667775432 22222 222233557888766 444333 3 346666777776
Q ss_pred EEEeecCCCcEEEEEEeC
Q 004329 222 LMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p 239 (760)
...+..+.+.+...+|+|
T Consensus 410 ~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 410 RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEECcCCCCCcCCCccCC
Confidence 666655555666666665
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.88 E-value=9.4e-07 Score=85.95 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=161.3
Q ss_pred CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC---cc
Q 004329 38 RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK---LQ 114 (760)
Q Consensus 38 ~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~---~~ 114 (760)
+-|.+.+|++...+.... ..........+..+.|.-....- +-.++-+-.+|.|.++.....+....+++-+ -.
T Consensus 44 R~Gkl~Lys~~d~~~~~l--~~~q~~dts~~~dm~w~~~~~~g-~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPL--DTLQCTDTSTEFDMLWRIRETDG-DFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred eccceEEEeecccccCcc--ceeeeecccccceeeeeeccCCc-cceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence 457788998875543221 11222234556777776543210 1146677788999999876555444444322 22
Q ss_pred ---EEEEEec--CCeEEEEECCCeEEEEE-CC---ceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC---
Q 004329 115 ---VTGVTLD--NEDIVSSSVDSTLKRWR-KG---KLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK--- 180 (760)
Q Consensus 115 ---V~~l~~~--~~~l~sgs~dg~v~vwd-~~---~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~--- 180 (760)
..++.|+ +..++++-.+|.+.+-+ .. +..+.++.|..+.|...|+.... +.+|+.|+.+..||.+-
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 2345554 55699999999998443 32 44557899999999999987644 67999999999999882
Q ss_pred ceE-EeecCCCceEEEEEeCC--CeEEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC---eEEEEeCCCcE
Q 004329 181 CAQ-TFVGHTDTVRGLSVMPG--VGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFA 252 (760)
Q Consensus 181 ~~~-~~~~h~~~V~~l~~~~~--~~l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I 252 (760)
.+. ..+-|...|.+|.-+|. ..+++|+.|..|++||.+ ++++..-. -.+.|+.+..+|.- .++++-..| .
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ 278 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-A 278 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-c
Confidence 222 24458899999998883 339999999999999975 44544322 34889999999975 455555555 5
Q ss_pred EEEe----CCc---eEEEEe-cCCcEEEEEEccCCc-EEEEEc-CCcEE-EEeCCCC
Q 004329 253 KIWK----DGV---CVQSIE-HPGCVWDAKFLENGD-IVTACS-DGVTR-IWTVHSD 298 (760)
Q Consensus 253 ~iwd----~~~---~~~~~~-~~~~v~~v~~~~~g~-lvt~~~-dg~I~-vw~~~~~ 298 (760)
+|-+ ..+ .....+ |.+-...-.|..... +++++. |..++ +|-.-++
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6665 112 111111 444555555633322 555443 66655 6654443
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.88 E-value=6.3e-08 Score=95.80 Aligned_cols=233 Identities=19% Similarity=0.236 Sum_probs=154.8
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE---
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV--- 94 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I--- 94 (760)
..+++++.+.++.. |+.|-..|++.-+.+. ....+....+....|..+|..+.|+.... .+++.+.|..+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~s-edfnkm~~~r~~~~h~~~v~~~if~~~~e-----~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALS-EDFNKMTFLKDYLAHQARVSAIVFSLTHE-----WVLSTGKDKQFAWH 141 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhh-hhhhhcchhhhhhhhhcceeeEEecCCce-----eEEEeccccceEEE
Confidence 56789999998888 9999999999999876 22333445556667888888877766554 34444444332
Q ss_pred ------------------------------------EEEEC--CCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeE
Q 004329 95 ------------------------------------LVWDL--GSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTL 134 (760)
Q Consensus 95 ------------------------------------~vwd~--~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v 134 (760)
..-.+ ..-.++.++.+|.+.+.+++|+ ++.+++|..|..+
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence 22111 1223566778999999999998 5569999999999
Q ss_pred EEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceEE----------------e---------
Q 004329 135 KRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQT----------------F--------- 185 (760)
Q Consensus 135 ~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~----------------~--------- 185 (760)
.+||++ .....+.+|...|..+...+--+ +++++.||.|.+|+.+-.... +
T Consensus 222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~ 301 (404)
T KOG1409|consen 222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWD 301 (404)
T ss_pred EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHh
Confidence 999986 45566778999998888776544 889999999999985421110 0
Q ss_pred ------ecC-----CCceEEEEEeCCCeEEEEeCCCeEEEEe--------cCCceEEEeecCCCcEEEEEEeCCC-eEEE
Q 004329 186 ------VGH-----TDTVRGLSVMPGVGIISASHDCTIRLWA--------LTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 186 ------~~h-----~~~V~~l~~~~~~~l~s~s~dg~I~iwd--------~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s 245 (760)
..| ...|...+-+......+-+..-.+|+.| .+..++.....-...|+.+.+...- +|++
T Consensus 302 ~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvT 381 (404)
T KOG1409|consen 302 RKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVT 381 (404)
T ss_pred hhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceee
Confidence 001 1122222222111133334444455554 3333444444445678888887765 9999
Q ss_pred EeCCCcEEEEeC
Q 004329 246 GSEDRFAKIWKD 257 (760)
Q Consensus 246 ~s~Dg~I~iwd~ 257 (760)
+|.|+.|+|||.
T Consensus 382 sG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 382 SGTDRVIKIWDV 393 (404)
T ss_pred cCCceEEEEEec
Confidence 999999999993
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.87 E-value=1.1e-05 Score=86.32 Aligned_cols=262 Identities=11% Similarity=0.129 Sum_probs=161.3
Q ss_pred EEEEECC----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC----CCeEEEEECCCC--
Q 004329 33 IATSSRD----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM----DTMVLVWDLGSG-- 102 (760)
Q Consensus 33 l~tgs~D----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~----dg~I~vwd~~~~-- 102 (760)
++.|+.+ +.|.+|+++... ......... ........++++|++. +|++... +|.|..|++...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~-g~l~~~~~~-~~~~~Ps~l~~~~~~~-----~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEET-GTLTLVQTV-AEGENPSWLAVSPDGR-----RLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTT-TEEEEEEEE-EESSSECCEEE-TTSS-----EEEEEETTSSTTTEEEEEEEETTTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCC-CCceEeeee-cCCCCCceEEEEeCCC-----EEEEEEccccCCCCEEEEEECCCcc
Confidence 4566666 799999984332 223333332 2344566788899887 5777765 578999988653
Q ss_pred c--eEEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEECCc------eeEEee----------cCCcCeEEEEEeCC
Q 004329 103 E--KVQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKGK------LVEFWE----------AHNAPIQTVIRIPS 161 (760)
Q Consensus 103 ~--~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~~------~~~~~~----------~~~~~v~~v~~~~~ 161 (760)
+ .+..........+.++++ +++++++. .+|.+.++++.. ....+. .......++.++|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 3 333344344566778885 55566655 689999997642 111121 12345788999999
Q ss_pred Cc-EEE-EECCCcEEEEeCCCc---e---EEee-cCCCceEEEEEeCCCe--EEEEeCCCeEEEEecC--Cc---eEEEe
Q 004329 162 GE-IVS-GSSDTTIKLWKGKKC---A---QTFV-GHTDTVRGLSVMPGVG--IISASHDCTIRLWALT--GQ---VLMEM 225 (760)
Q Consensus 162 ~~-l~t-gs~dg~i~iwd~~~~---~---~~~~-~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~--~~---~~~~~ 225 (760)
++ +++ .-....|++|+.... + ..+. ......+.+.|+|++. +++.-.+++|.++++. .. .+...
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 88 333 334557888875432 1 1222 3456689999999876 5566678999999975 22 22222
Q ss_pred ec----C--CCcEEEEEEeCCC--eEEEEeCCCcEEEEe----CCc--eEEEEecCC-cEEEEEEccCCc-EEEEE-cCC
Q 004329 226 VG----H--TAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGV--CVQSIEHPG-CVWDAKFLENGD-IVTAC-SDG 288 (760)
Q Consensus 226 ~~----h--~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd----~~~--~~~~~~~~~-~v~~v~~~~~g~-lvt~~-~dg 288 (760)
.. . ......+.++|+| ++++...+++|.+|+ .+. .+..+...+ ..+.++++|+|+ +++++ .++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 21 1 2368899999999 455556778899998 222 233333433 689999999999 55555 478
Q ss_pred cEEEEeCC--CCeee
Q 004329 289 VTRIWTVH--SDKVA 301 (760)
Q Consensus 289 ~I~vw~~~--~~~~~ 301 (760)
.|.+|+++ +|++.
T Consensus 315 ~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCcEE
Confidence 99999874 55543
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=4.3e-07 Score=100.54 Aligned_cols=216 Identities=11% Similarity=0.065 Sum_probs=126.0
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEEC-CC--eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSR-DR--TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~-Dg--~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
+.+..+...+.+..|+|||+ |+..+. ++ .|.+||+.+++. ..+....+......|+|+++. ++++.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~------~~lt~~~g~~~~~~wSPDG~~----La~~~ 280 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR------EKVTSFPGINGAPRFSPDGKK----LALVL 280 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe------EEecCCCCCcCCeeECCCCCE----EEEEE
Confidence 34445566788999999998 665543 33 588888876541 112222333457899999984 34556
Q ss_pred eCCCe--EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCCe--EEEEECC-ceeEEeecCCcCeEEEEEeC
Q 004329 89 GMDTM--VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDST--LKRWRKG-KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 89 s~dg~--I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--v~vwd~~-~~~~~~~~~~~~v~~v~~~~ 160 (760)
+.+|. |++||+.+++.. .+..+.......+|+ ++.++..+ .++. |.++|.. .....+..+........|+|
T Consensus 281 ~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp 359 (448)
T PRK04792 281 SKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP 359 (448)
T ss_pred eCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC
Confidence 66775 888898877653 344455555667776 44555444 3444 4445653 22232322222234568899
Q ss_pred CCc-EE-EEECCCcEEE--EeCCCc-eEEeecCCCceEEEEEeCCCe-EE-EEeCCCe--EEEEecCCceEEEeecCCCc
Q 004329 161 SGE-IV-SGSSDTTIKL--WKGKKC-AQTFVGHTDTVRGLSVMPGVG-II-SASHDCT--IRLWALTGQVLMEMVGHTAI 231 (760)
Q Consensus 161 ~~~-l~-tgs~dg~i~i--wd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~-s~s~dg~--I~iwd~~~~~~~~~~~h~~~ 231 (760)
+|+ ++ +...++..++ +|.... ...+... .......|+|++. ++ +...+|. +.+++.+|.....+..+.+.
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~ 438 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGE 438 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCC
Confidence 987 43 3334454444 564432 2223222 1223457888776 44 3444443 67778888887777766667
Q ss_pred EEEEEEeCC
Q 004329 232 VYSIDSHAS 240 (760)
Q Consensus 232 v~~v~~~p~ 240 (760)
+...+|+|-
T Consensus 439 ~~~p~Wsp~ 447 (448)
T PRK04792 439 VKSPAWSPF 447 (448)
T ss_pred cCCCccCCC
Confidence 777778763
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.84 E-value=1.1e-06 Score=97.09 Aligned_cols=196 Identities=16% Similarity=0.076 Sum_probs=128.0
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC---CeEEEEECCce-eEEeecCCcCeEEEEEeCCCc-E
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD---STLKRWRKGKL-VEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d---g~v~vwd~~~~-~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
..|.++|..... ...+..+...+.+..|+ +++++.++.+ ..|++||.... ...+..+...+.++.|+|++. +
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 468888876443 44455566678888887 5557666544 47999987532 344445556677789999987 5
Q ss_pred E-EEECCC--cEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeC-CC--eEEEEecCCceEEEeecCCCcEEEEE
Q 004329 165 V-SGSSDT--TIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASH-DC--TIRLWALTGQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 165 ~-tgs~dg--~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-dg--~I~iwd~~~~~~~~~~~h~~~v~~v~ 236 (760)
+ +.+.++ .|++||... ....+..+........|+|++. ++.++. ++ .|.++|+.+.....+..+........
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPS 328 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeE
Confidence 4 444444 588888654 3444555555556778999776 655544 33 57778877666666666667778889
Q ss_pred EeCCC-eEEEEeCCC---cEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEcCC
Q 004329 237 SHASG-LIVSGSEDR---FAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG 288 (760)
Q Consensus 237 ~~p~~-~l~s~s~Dg---~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg 288 (760)
|+|+| .++.++.++ .|.+|| .....+.+..........|+|+|+ ++..+.++
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 99999 777766665 688888 333334444333445668999998 65555543
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=6e-07 Score=95.32 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=131.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeC---CCccEEEEEe--------------------cCC--eEEEEECCCeEEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQG---HKLQVTGVTL--------------------DNE--DIVSSSVDSTLKRWR 138 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~---h~~~V~~l~~--------------------~~~--~l~sgs~dg~v~vwd 138 (760)
+++....||.+++|+...++....+.. -++..++..| +.+ .++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 689999999999999998887766642 2233334433 112 388899999999998
Q ss_pred CC--ceeEEee--cCCcCeEEEEEeCC-CcEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCC
Q 004329 139 KG--KLVEFWE--AHNAPIQTVIRIPS-GEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDC 210 (760)
Q Consensus 139 ~~--~~~~~~~--~~~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg 210 (760)
.. +....+. .|.+.|.++.++.+ +.+.+++.|+.+..|+... ..+.+......+.+++++||+. +++++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 63 4444443 68999999998876 4588999999999999654 4567778888899999999876 55554 7
Q ss_pred eEEEEec-CCceEEEeecCCCcEEEEEEeCC-----C--eEEEEeCCCcEEEEe
Q 004329 211 TIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-----G--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 211 ~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~-----~--~l~s~s~Dg~I~iwd 256 (760)
.|++||+ +++.+..+.||.++|.++.|--. | .|.+...+..+.+|-
T Consensus 165 ~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 165 QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 8999997 57788899999999999998876 4 555566677788885
No 260
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=6.8e-07 Score=97.12 Aligned_cols=296 Identities=13% Similarity=0.167 Sum_probs=195.4
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCC-----------Ce--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCe
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDN-----------VG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFV 68 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~-----------~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V 68 (760)
.+.|..++++++++.-|+..|+.|.|.|. .. |+++...|.|.+||...+. ....+..|..++
T Consensus 38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-----~~~~l~~~~~~~ 112 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-----VINWLSHSNDSV 112 (1062)
T ss_pred EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-----hhhhhcCCCcch
Confidence 45678889999999999999999999853 12 7778888999999998665 445567789999
Q ss_pred EEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEEC-C----
Q 004329 69 GPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRK-G---- 140 (760)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~-~---- 140 (760)
..++|.+..+.. ..++++-.....|.+|+..+|+..+..........|+.++ ...+..-+..|.+.+-+. +
T Consensus 113 qdl~W~~~rd~S-rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 113 QDLCWVPARDDS-RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred hheeeeeccCcc-hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 999998865421 2367777788999999999999888776555666666664 333444444444444320 0
Q ss_pred -----------------------------------------------------------------------ceeEEeecC
Q 004329 141 -----------------------------------------------------------------------KLVEFWEAH 149 (760)
Q Consensus 141 -----------------------------------------------------------------------~~~~~~~~~ 149 (760)
.++......
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie 271 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE 271 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec
Confidence 111111122
Q ss_pred CcCeEEEEEeCCCc---EEEEECCCcEEEEeCCCc---------------------eEEe--------------------
Q 004329 150 NAPIQTVIRIPSGE---IVSGSSDTTIKLWKGKKC---------------------AQTF-------------------- 185 (760)
Q Consensus 150 ~~~v~~v~~~~~~~---l~tgs~dg~i~iwd~~~~---------------------~~~~-------------------- 185 (760)
.+.+.-+.+.|+++ +++...||.+.+|-.+.+ ++..
T Consensus 272 r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~av 351 (1062)
T KOG1912|consen 272 RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAV 351 (1062)
T ss_pred cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhh
Confidence 33344556667654 778899999999852210 0000
Q ss_pred ----------------------------------------------------ecCCCceEEEEEeC-----------CC-
Q 004329 186 ----------------------------------------------------VGHTDTVRGLSVMP-----------GV- 201 (760)
Q Consensus 186 ----------------------------------------------------~~h~~~V~~l~~~~-----------~~- 201 (760)
.+|.....+....| ++
T Consensus 352 l~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n 431 (1062)
T KOG1912|consen 352 LYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGN 431 (1062)
T ss_pred hhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCC
Confidence 02333333333222 11
Q ss_pred -------eEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCCeEEEEeCCC----------cEEEEe--CCc--
Q 004329 202 -------GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDR----------FAKIWK--DGV-- 259 (760)
Q Consensus 202 -------~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg----------~I~iwd--~~~-- 259 (760)
.++.|.+.|+|.++|+. +.....+..|++.|.++.|.....+++.+... .+.+-| +|.
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence 16788999999999975 45556678899999999998777566554332 233333 222
Q ss_pred eEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 260 CVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 260 ~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
..+..+ ...+|..+..+..|+ ++..-.|.-+.+||+++.+++..
T Consensus 512 ~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~ 558 (1062)
T KOG1912|consen 512 RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL 558 (1062)
T ss_pred ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHH
Confidence 122122 345899999999999 77788899999999987766543
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.83 E-value=6.3e-07 Score=95.15 Aligned_cols=182 Identities=20% Similarity=0.303 Sum_probs=133.7
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC---------------CCCCcEEEEEeCCCeEEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE---------------EFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~---------------~~~~~~l~sgs~dg~I~vw 97 (760)
+|....||.+|+|+...++... .......-++...+..|.-.-. ......++-|...|.|.+|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~--e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQ--EFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred EeecCCCCeEEEEEccCceeee--eeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 8999999999999998665211 1111112234444555531100 0122368899999999999
Q ss_pred ECCCCceEEEEe--CCCccEEEEEecC--CeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECC
Q 004329 98 DLGSGEKVQTLQ--GHKLQVTGVTLDN--EDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSD 170 (760)
Q Consensus 98 d~~~~~~~~~l~--~h~~~V~~l~~~~--~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~d 170 (760)
+...++....+. +|.+.|.++.++. +.|.+++.|+.+..|+.. ..++.+......+.+++++||+. +++++
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 999999888876 6999999999874 449999999999999864 66777888888999999999987 45554
Q ss_pred CcEEEEeCC--CceEEeecCCCceEEEEEeCC------Ce-EEEEeCCCeEEEEecC
Q 004329 171 TTIKLWKGK--KCAQTFVGHTDTVRGLSVMPG------VG-IISASHDCTIRLWALT 218 (760)
Q Consensus 171 g~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~------~~-l~s~s~dg~I~iwd~~ 218 (760)
+.|++||.. +.+..|.+|.++|+++.|... .+ +.+...+..+.+|-..
T Consensus 164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 689999954 577899999999999999764 23 3344556667778653
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=6.7e-08 Score=104.06 Aligned_cols=285 Identities=15% Similarity=0.232 Sum_probs=188.0
Q ss_pred cCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCC
Q 004329 5 DFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~ 82 (760)
|-++|-..-.|+ -.+.+.++.++|.|+ ++.+++-|. .+-|++..- .+...+. ...-.|-.+.|++....-
T Consensus 11 ns~tf~kslsl~-v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~----~ppr~l~h~tpw~vad~qws~h~a~~-- 82 (1081)
T KOG0309|consen 11 NSPTFGKSLSLK-VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPF----TPPRWLHHITPWQVADVQWSPHPAKP-- 82 (1081)
T ss_pred CCCccCceeEEE-ecCcccceeeccccchhhhhhhcCe-EEEeccCCC----CCceeeeccCcchhcceecccCCCCc--
Confidence 444554444444 246788899999999 999998775 455665322 1222222 123457778888876532
Q ss_pred cEEEEEeCCCeEEEEECCC---CceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCc---eeEEeecCCcCe
Q 004329 83 GGLVSGGMDTMVLVWDLGS---GEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPI 153 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~---~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v 153 (760)
+-++......-.+|++.. ...-..+.+|...|+.+.|+ ...+++++.|..+..||++. ++..+..-...-
T Consensus 83 -~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 83 -YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred -eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 344444445566788743 24456678999999999997 44599999999999999874 444444445556
Q ss_pred EEEEEeCC-CcEEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEecCCc--eEEEe
Q 004329 154 QTVIRIPS-GEIVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWALTGQ--VLMEM 225 (760)
Q Consensus 154 ~~v~~~~~-~~l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~~~~--~~~~~ 225 (760)
..+.|+-. +.+++.+..+.|++||.+ .+...+++|...|.++.|.. .+.+.++++||+|+.||.... .-...
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 67888764 457788888999999965 46678888999999999987 445999999999999996432 22222
Q ss_pred ecCCCcEEEEEEeCCC--eEE-EEeCCCcEEEEe------------CCceEEEEe-cCCcEEEEEEcc--------CC--
Q 004329 226 VGHTAIVYSIDSHASG--LIV-SGSEDRFAKIWK------------DGVCVQSIE-HPGCVWDAKFLE--------NG-- 279 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~--~l~-s~s~Dg~I~iwd------------~~~~~~~~~-~~~~v~~v~~~~--------~g-- 279 (760)
.....+|..-.+.|-| +.+ -.-.+..+.+++ ..+.+.++. |.+.|...-|-. +.
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 3345566666666654 211 111122333332 345566664 777765555532 22
Q ss_pred -cEEEEEcCCcEEEEeCCCC
Q 004329 280 -DIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 280 -~lvt~~~dg~I~vw~~~~~ 298 (760)
+++|-+.|..+|+|-+.+.
T Consensus 322 fQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eeEEEeecCCceEeeeccHH
Confidence 2899999999999998753
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=6e-06 Score=86.17 Aligned_cols=284 Identities=13% Similarity=0.033 Sum_probs=180.3
Q ss_pred ccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 4 IDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
|+.+++.....+..-.-++..+++||.|.++....-.-|.+|.-.... ....+ -...|..+.|+|.+.
T Consensus 17 ~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-----~l~~~--~~~~V~~~~fSP~~k----- 84 (561)
T COG5354 17 WNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA-----KLVRF--RHPDVKYLDFSPNEK----- 84 (561)
T ss_pred ecCccccccccccccCcchhheeecCcchheehhhccceEEccccchh-----heeee--ecCCceecccCcccc-----
Confidence 444555555555556678999999999994444555678899865332 11122 234688899999887
Q ss_pred EEEEEeCCC---------------eEEEEECCCCceEEEEeCCCcc--EE-EEEe--cCCeEEEEECCCeEEEEECCcee
Q 004329 84 GLVSGGMDT---------------MVLVWDLGSGEKVQTLQGHKLQ--VT-GVTL--DNEDIVSSSVDSTLKRWRKGKLV 143 (760)
Q Consensus 84 ~l~sgs~dg---------------~I~vwd~~~~~~~~~l~~h~~~--V~-~l~~--~~~~l~sgs~dg~v~vwd~~~~~ 143 (760)
+|.+-+..+ .+.+||..+|..+..+.....+ .+ -+.| ++.+.+-. -...+++++.....
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcc
Confidence 566654433 4999999999999988866555 33 3344 45553333 44568888853222
Q ss_pred EEeecC---CcCeEEEEEeCCCc---EE-----EEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCeEEEE----
Q 004329 144 EFWEAH---NAPIQTVIRIPSGE---IV-----SGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVGIISA---- 206 (760)
Q Consensus 144 ~~~~~~---~~~v~~v~~~~~~~---l~-----tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~l~s~---- 206 (760)
.....+ ...+....++|.+. ++ .....+++++|.+.. .+.+..-....=..+.|.+.+..+.+
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 222211 35677888888643 33 256678899998542 22211111222235667664441111
Q ss_pred ---e-----CCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC---eEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEE
Q 004329 207 ---S-----HDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKF 275 (760)
Q Consensus 207 ---s-----~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~ 275 (760)
+ ....+.+++++++-+.......++|...+|.|.+ -+++|-.+..+.++|...-+.....+..=..+.|
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~f 323 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFF 323 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccc
Confidence 1 1256888888876665555678999999999987 4555668889999993333555555556677889
Q ss_pred ccCCc-EEEEEc---CCcEEEEeCCCCee
Q 004329 276 LENGD-IVTACS---DGVTRIWTVHSDKV 300 (760)
Q Consensus 276 ~~~g~-lvt~~~---dg~I~vw~~~~~~~ 300 (760)
+|.++ ++.++- .|.|-+|+......
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceE
Confidence 99999 555554 58899999765543
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.80 E-value=1e-05 Score=84.73 Aligned_cols=252 Identities=11% Similarity=0.013 Sum_probs=149.7
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe---------CCCeEEEEECCCCceEEEEeC
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG---------MDTMVLVWDLGSGEKVQTLQG 110 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs---------~dg~I~vwd~~~~~~~~~l~~ 110 (760)
++|.+.|..+.+ ....+.....+- .+ ++|+++. +.++.+ .+..|.+||..+.+.+..+.-
T Consensus 27 ~~v~ViD~~~~~-----v~g~i~~G~~P~-~~-~spDg~~----lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~ 95 (352)
T TIGR02658 27 TQVYTIDGEAGR-----VLGMTDGGFLPN-PV-VASDGSF----FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL 95 (352)
T ss_pred ceEEEEECCCCE-----EEEEEEccCCCc-ee-ECCCCCE----EEEEeccccccccCCCCCEEEEEECccCcEEeEEcc
Confidence 899999998654 334443332222 24 8999884 244445 689999999999999988873
Q ss_pred CCc---------cEEEEEecCCeEEEEE-C-CCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEe
Q 004329 111 HKL---------QVTGVTLDNEDIVSSS-V-DSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWK 177 (760)
Q Consensus 111 h~~---------~V~~l~~~~~~l~sgs-~-dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd 177 (760)
... ....++-++++++... . +..|.+.|.. +.+..+.... ...+-..++..+.+-|.||......
T Consensus 96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecCceEEEE
Confidence 222 1333333466666555 3 6889999875 4444443311 2222223333344445566555432
Q ss_pred CC---Cc-eE---EeecCCCceEEE-EEeC-CCeEEEEeCCCeEEEEecCCceEEE------eec-------CCCcEEEE
Q 004329 178 GK---KC-AQ---TFVGHTDTVRGL-SVMP-GVGIISASHDCTIRLWALTGQVLME------MVG-------HTAIVYSI 235 (760)
Q Consensus 178 ~~---~~-~~---~~~~h~~~V~~l-~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~------~~~-------h~~~v~~v 235 (760)
.. +. .. .+.....++..= .+.+ ++..+-.+..|+|.+.|+.+..... +.. ......-+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 11 10 11 111111111000 3344 6664444455999999964432111 110 22334459
Q ss_pred EEeCCC-eEEEEe----------CCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EE--EEEcCCcEEEEeCCCCe
Q 004329 236 DSHASG-LIVSGS----------EDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV--TACSDGVTRIWTVHSDK 299 (760)
Q Consensus 236 ~~~p~~-~l~s~s----------~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lv--t~~~dg~I~vw~~~~~~ 299 (760)
++++++ .++... ..+.|.++| +++.+..+.....++.++++|||+ ++ +...++.|.++|..+++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999998 554432 225799999 778888888888999999999999 43 33358999999999999
Q ss_pred eechh
Q 004329 300 VADSL 304 (760)
Q Consensus 300 ~~~~~ 304 (760)
.+.++
T Consensus 334 ~i~~i 338 (352)
T TIGR02658 334 ELSSV 338 (352)
T ss_pred EEeee
Confidence 88765
No 265
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=5.4e-06 Score=90.67 Aligned_cols=279 Identities=10% Similarity=0.047 Sum_probs=162.2
Q ss_pred ccccCCCceEeEEeccCCC----------CEEE-EEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE
Q 004329 2 MDIDFKEYQLSSELRGHED----------DVRG-ICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP 70 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~----------~V~~-v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~ 70 (760)
+.+|..+.+...+..-... .+.+ +.. .++.++.++.+|.+.-+|..+++.. |. .... ..+.+
T Consensus 82 ~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~-W~----~~~~-~~~~s 154 (394)
T PRK11138 82 KALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVA-WQ----TKVA-GEALS 154 (394)
T ss_pred EEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCc-cc----ccCC-Cceec
Confidence 3456667777766543210 1111 111 3456888889999999999888732 21 1111 11211
Q ss_pred EEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE-----EEEEecCCeEEEEECCCeEEEEECC--cee
Q 004329 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV-----TGVTLDNEDIVSSSVDSTLKRWRKG--KLV 143 (760)
Q Consensus 71 l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~l~sgs~dg~v~vwd~~--~~~ 143 (760)
--...+ +.++.++.+|.++.+|.++|+.+.......... .+-...++.++.++.+|.+..+|.. +.+
T Consensus 155 sP~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 155 RPVVSD------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred CCEEEC------CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh
Confidence 101112 257888889999999999999988876431111 1112235678888889988887654 322
Q ss_pred EEeecCC----c---CeEEEEEe---CCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEE
Q 004329 144 EFWEAHN----A---PIQTVIRI---PSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIR 213 (760)
Q Consensus 144 ~~~~~~~----~---~v~~v~~~---~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~ 213 (760)
....... . ....+..+ .++.++.++.+|.+..+|.......++........+... ++.++.++.+|.+.
T Consensus 229 W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~~vy~~~~~g~l~ 307 (394)
T PRK11138 229 WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVD-GGRIYLVDQNDRVY 307 (394)
T ss_pred heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEE-CCEEEEEcCCCeEE
Confidence 2221100 0 00011111 256677888899999999665544443322222223332 67788889999999
Q ss_pred EEec-CCceEEEeecCCC-cEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecC-CcEEEEEEccCCcEEEEEcCC
Q 004329 214 LWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWDAKFLENGDIVTACSDG 288 (760)
Q Consensus 214 iwd~-~~~~~~~~~~h~~-~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~-~~v~~v~~~~~g~lvt~~~dg 288 (760)
.+|. +|+.+........ ...+..+ -++.++.++.||.+++.| +++.+...... ..+.+--...+++++.++.||
T Consensus 308 ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 308 ALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDG 386 (394)
T ss_pred EEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCc
Confidence 9997 4555443322111 1122222 245888899999999999 77777766532 333332122466799999999
Q ss_pred cEEEEeC
Q 004329 289 VTRIWTV 295 (760)
Q Consensus 289 ~I~vw~~ 295 (760)
.|..++.
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988764
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=2.5e-07 Score=90.21 Aligned_cols=265 Identities=15% Similarity=0.226 Sum_probs=170.7
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC------------CCeEEEEEeCCCCCCCCcE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT------------SFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~ 84 (760)
..+.|++|.|...|. |+||...|.|.+|.-.......+.....+++|. ..|+.+.|..++.. ..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r---~h 101 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR---NH 101 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc---ce
Confidence 356789999998887 999999999999986543322233333445553 46888999887753 36
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEe---------CCCccEEEEE------ecCCe-EEEEECCCeEEEEECCceeEE-ee
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQ---------GHKLQVTGVT------LDNED-IVSSSVDSTLKRWRKGKLVEF-WE 147 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~---------~h~~~V~~l~------~~~~~-l~sgs~dg~v~vwd~~~~~~~-~~ 147 (760)
++..+.|.+|++|.+........-. .-.+++++.. .+... ++++ ++.+. -.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------------~p~rvyaN 169 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------------KPCRVYAN 169 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe------------ccceeccc
Confidence 8888999999999986542211100 0112222210 01111 1111 11122 25
Q ss_pred cCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceE-----EeecC-----CCceEEEEEeCC--CeEEEEeCCCeEEEE
Q 004329 148 AHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQ-----TFVGH-----TDTVRGLSVMPG--VGIISASHDCTIRLW 215 (760)
Q Consensus 148 ~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~-----~~~~h-----~~~V~~l~~~~~--~~l~s~s~dg~I~iw 215 (760)
.|...+.++.+..+...+..+.|-.|.+|++...-. .++.| ...|++..|+|. ..+.-.+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 688889999999998877788899999998654322 22334 346889999993 448888899999999
Q ss_pred ecCCceE-----EE------------eecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe---CCceEEEEe-c--------
Q 004329 216 ALTGQVL-----ME------------MVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-H-------- 266 (760)
Q Consensus 216 d~~~~~~-----~~------------~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd---~~~~~~~~~-~-------- 266 (760)
|++...+ .. +.+-...|..+.|+++|.++.+-.--+|+||| ...++.++. |
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHH
Confidence 9853211 11 11223567889999999444444556799999 567777774 2
Q ss_pred ----CCcE---EEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 267 ----PGCV---WDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 267 ----~~~v---~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
...| ..+.|+.|.. +++|+.....-++-..+
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 1233 4467777766 88888888877776443
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.76 E-value=6.1e-06 Score=98.02 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=172.8
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEE----eCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFW----SLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iW----d~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
..+.|.++.+.++.. ++.+..+|.|.+. +..+. .....-.-...|.+++|+||.. +++..+.++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~------~~E~VG~vd~GI~a~~WSPD~E-----lla~vT~~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED------EIEIVGSVDSGILAASWSPDEE-----LLALVTGEG 142 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc------eeEEEEEEcCcEEEEEECCCcC-----EEEEEeCCC
Confidence 346899999998887 9999999999999 44322 2223333477899999999998 688888888
Q ss_pred eEEEEECCCCce----------------E--------EEEeC------------------------CCccEEEEEec--C
Q 004329 93 MVLVWDLGSGEK----------------V--------QTLQG------------------------HKLQVTGVTLD--N 122 (760)
Q Consensus 93 ~I~vwd~~~~~~----------------~--------~~l~~------------------------h~~~V~~l~~~--~ 122 (760)
++.+.+.. .++ + ..++| +...-..|+|. +
T Consensus 143 ~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 143 NLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG 221 (928)
T ss_pred EEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC
Confidence 88776431 111 0 01110 22234567785 5
Q ss_pred CeEEEEEC---C---CeEEEEECCceeE-EeecCCcCeEEEEEeCCCcEEEEECC----CcEEEEeCCCceE---Ee--e
Q 004329 123 EDIVSSSV---D---STLKRWRKGKLVE-FWEAHNAPIQTVIRIPSGEIVSGSSD----TTIKLWKGKKCAQ---TF--V 186 (760)
Q Consensus 123 ~~l~sgs~---d---g~v~vwd~~~~~~-~~~~~~~~v~~v~~~~~~~l~tgs~d----g~i~iwd~~~~~~---~~--~ 186 (760)
.++++.+. . ..+|||+-...+. +-+.-.+--.+++|-|.|.++++... ..|.+|.-+...+ .+ .
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFD 301 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCC
Confidence 55666654 2 4799997753333 32322333457899999997766543 5677776433322 22 2
Q ss_pred cCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCc---eEEEee-cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe----
Q 004329 187 GHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQ---VLMEMV-GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---- 256 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~---~~~~~~-~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd---- 256 (760)
.....|..+.|++++.+++......|.+|..... ..+.+. .....+..+.|+|.. .|...+.+|.+..++
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 3567899999999888444444555999986543 223333 223344558999876 566666656665543
Q ss_pred --CC-----------------c---------------eEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 257 --DG-----------------V---------------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 257 --~~-----------------~---------------~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.+ + +...+..+.+|.+++|++++. +++-..||.|.+|......
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 00 0 112223567899999999887 8999999999999966543
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=3.3e-08 Score=106.33 Aligned_cols=201 Identities=24% Similarity=0.364 Sum_probs=147.6
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.+-..+.||+..|+.+.|.+... ++|++.|-.+..||+.+... +......-......++|+-... .+.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~~~w~s~asqVkwnyk~p-----~vla 175 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYSTSSWRSAASQVKWNYKDP-----NVLA 175 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeeeecccccCceeeecccCc-----chhh
Confidence 44556789999999999998877 99999999999999985542 3334444455677889987766 3677
Q ss_pred EeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEE---eecCCcCeEEEEEeC
Q 004329 88 GGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEF---WEAHNAPIQTVIRIP 160 (760)
Q Consensus 88 gs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~---~~~~~~~v~~v~~~~ 160 (760)
.+..+.|.+||.+.| .++..+++|...|..+.|+ ...+.+++.||+|+.||..+.... ......+|+--.+.|
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 788889999999876 6788899999999999987 556999999999999987644332 234456777777777
Q ss_pred CCc--EEEEEC-CCcEEEE------------eCCCceEEeecCCCceEEEEEeC-----------CCeEEEEeCCCeEEE
Q 004329 161 SGE--IVSGSS-DTTIKLW------------KGKKCAQTFVGHTDTVRGLSVMP-----------GVGIISASHDCTIRL 214 (760)
Q Consensus 161 ~~~--l~tgs~-dg~i~iw------------d~~~~~~~~~~h~~~V~~l~~~~-----------~~~l~s~s~dg~I~i 214 (760)
=|. ++.-.. +..+.++ |..++++.|.||.+.|....|.. +-++++=+.|.++++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 443 222111 1133332 34568889999999987666643 223999999999999
Q ss_pred EecCC
Q 004329 215 WALTG 219 (760)
Q Consensus 215 wd~~~ 219 (760)
|-+..
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 97643
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=7.6e-07 Score=95.73 Aligned_cols=236 Identities=12% Similarity=0.161 Sum_probs=161.7
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
...-++|.||+..|.-+.|+.+.+ |-|+..+|.|.+|-+-.+. |.....-...++-|.+++|..++. .++.
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs---W~EEMiNnRnKSvV~SmsWn~dG~-----kIcI 132 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS---WCEEMINNRNKSVVVSMSWNLDGT-----KICI 132 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc---HHHHHhhCcCccEEEEEEEcCCCc-----EEEE
Confidence 445578999999999999998777 9999999999999987665 555555566788899999999998 4777
Q ss_pred EeCCCeEEEEECCCCceE-EEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC---------ceeEE----eecCCc
Q 004329 88 GGMDTMVLVWDLGSGEKV-QTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG---------KLVEF----WEAHNA 151 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~-~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~---------~~~~~----~~~~~~ 151 (760)
...||.|.+=.++..+.. +.+++. ....+.|+ ...++.+-.+|.+.+||.. .+... +.....
T Consensus 133 vYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 133 VYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred EEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence 788888877776543321 122221 22345666 3337777788999999753 11111 111122
Q ss_pred CeEEEEEeC--------CCc-EEEEECCCcEEEEeC-CCceEEeecCCCceEEEEEeCCCe-EEEEeCC---------Ce
Q 004329 152 PIQTVIRIP--------SGE-IVSGSSDTTIKLWKG-KKCAQTFVGHTDTVRGLSVMPGVG-IISASHD---------CT 211 (760)
Q Consensus 152 ~v~~v~~~~--------~~~-l~tgs~dg~i~iwd~-~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~d---------g~ 211 (760)
.+-.+.|.. +.. ++.+...|.+.+-.. +.....+....-.+....|++++. ++.|+.| ..
T Consensus 211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccce
Confidence 344555542 322 788889999888752 223333333346788899999777 7777764 36
Q ss_pred EEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEE
Q 004329 212 IRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKI 254 (760)
Q Consensus 212 I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~i 254 (760)
|.+|..-|..+.++......|++++|-..|+-++-.-|+.|.+
T Consensus 291 v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 291 VHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred EEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 8888888999999999999999999988883333334555554
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=1e-05 Score=84.46 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=168.7
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCC---------------eEEEEeCCCCCCccceeeeEeeCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDR---------------TVRFWSLDPSDKRKYHSSKILLGHTS 66 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg---------------~i~iWd~~~~~~~~~~~~~~~~~h~~ 66 (760)
.|+.+.+..+.++. ...|..+.|+|.++ |.|-++.+ .+.+||..++. ....+..-..
T Consensus 57 ~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~-----iv~sf~~~~q 129 (561)
T COG5354 57 CWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM-----IVFSFNGISQ 129 (561)
T ss_pred Eccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce-----eEeeccccCC
Confidence 45555555444443 35689999999999 77776544 48999998775 3333333333
Q ss_pred C--eE-EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceE----EEEeCCCccEEEEEecCC----eEEE-----EEC
Q 004329 67 F--VG-PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV----QTLQGHKLQVTGVTLDNE----DIVS-----SSV 130 (760)
Q Consensus 67 ~--V~-~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~----~~l~~h~~~V~~l~~~~~----~l~s-----gs~ 130 (760)
+ .+ -+.|+-++.. ++- -....++++++ ++... ..++ ...+....+++. .|+. ...
T Consensus 130 ~~~~Wp~~k~s~~D~y-----~AR-vv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~k 200 (561)
T COG5354 130 PYLGWPVLKFSIDDKY-----VAR-VVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNK 200 (561)
T ss_pred cccccceeeeeecchh-----hhh-hccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCC
Confidence 3 33 5677777652 222 24456899997 33221 1111 244555666532 1232 356
Q ss_pred CCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEE-----EE-------CCCcEEEEeCCC-ceEEeecCCCceEEE
Q 004329 131 DSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVS-----GS-------SDTTIKLWKGKK-CAQTFVGHTDTVRGL 195 (760)
Q Consensus 131 dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~t-----gs-------~dg~i~iwd~~~-~~~~~~~h~~~V~~l 195 (760)
.+++++|.+. ..+.+..-....-..+.|.+.|..+. -. ....++++++.+ .++....-.++|...
T Consensus 201 pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf 280 (561)
T COG5354 201 PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDF 280 (561)
T ss_pred CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceee
Confidence 6778888764 22222222223334567777776211 11 124577777553 333333668999999
Q ss_pred EEeCCCe---EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCC---CcEEEEe-CCceEEEEecC
Q 004329 196 SVMPGVG---IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK-DGVCVQSIEHP 267 (760)
Q Consensus 196 ~~~~~~~---l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~D---g~I~iwd-~~~~~~~~~~~ 267 (760)
+|.|.+. +++|-.+..+.++|++++... ......-..+.|+|.+ +++.++-| |.+-+|| .++....-...
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~ 358 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGNLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN 358 (561)
T ss_pred eecccCCceeEEecccccceeecccccceEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence 9999443 556678999999999999443 3455666778899998 77776654 6799999 33333222322
Q ss_pred C-cEEEEEEccCCcE-EEEEc------CCcEEEEeCCCCee
Q 004329 268 G-CVWDAKFLENGDI-VTACS------DGVTRIWTVHSDKV 300 (760)
Q Consensus 268 ~-~v~~v~~~~~g~l-vt~~~------dg~I~vw~~~~~~~ 300 (760)
+ ...-+.|+|||++ .+... |..|.+|++.....
T Consensus 359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 3 4455679999994 33322 67788888766554
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.66 E-value=7.6e-05 Score=78.28 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=152.8
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEE---------CCCeEEEEeCCCCCCccceeeeEeeC------
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSS---------RDRTVRFWSLDPSDKRKYHSSKILLG------ 63 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs---------~Dg~i~iWd~~~~~~~~~~~~~~~~~------ 63 (760)
|.+.|..+++.+.++..-..+- .+ ++||++ .++.+ ++..|.+||..+.+ ....+..
T Consensus 29 v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-----~~~~i~~p~~p~~ 101 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-----PIADIELPEGPRF 101 (352)
T ss_pred EEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-----EEeEEccCCCchh
Confidence 3567888899999888543333 24 899998 44455 68999999999776 2333321
Q ss_pred -CCCCeEEEEEeCCCCCCCCcEEEEEe-C-CCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC-
Q 004329 64 -HTSFVGPLAWISPNEEFPEGGLVSGG-M-DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK- 139 (760)
Q Consensus 64 -h~~~V~~l~~~~~~~~~~~~~l~sgs-~-dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~- 139 (760)
.......++++|+++ +++... . +..|.+.|+.+++.+..+.-.. +..-...++..+.+-+.||.......
T Consensus 102 ~~~~~~~~~~ls~dgk-----~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNK-----TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYG 175 (352)
T ss_pred hccCccceEEECCCCC-----EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEec
Confidence 123345788999998 455444 3 7999999999999998887522 22223334444555566666555422
Q ss_pred --Ccee-E---EeecCCcCeEEE-EEeC-CCcEEEEECCCcEEEEeCCCc-------eEEeec-------CCCceEEEEE
Q 004329 140 --GKLV-E---FWEAHNAPIQTV-IRIP-SGEIVSGSSDTTIKLWKGKKC-------AQTFVG-------HTDTVRGLSV 197 (760)
Q Consensus 140 --~~~~-~---~~~~~~~~v~~v-~~~~-~~~l~tgs~dg~i~iwd~~~~-------~~~~~~-------h~~~V~~l~~ 197 (760)
++.. . .+.....++..- .+.+ +|..+-.+..|+|.+.|.... ...+.. ..+.+.-+++
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 1111 1 111111111000 3344 677554555599999994221 111111 2334455999
Q ss_pred eCCCe-EEEEe----------CCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC--eEEE-EeCCCcEEEEe--CCceE
Q 004329 198 MPGVG-IISAS----------HDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVS-GSEDRFAKIWK--DGVCV 261 (760)
Q Consensus 198 ~~~~~-l~s~s----------~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~--~l~s-~s~Dg~I~iwd--~~~~~ 261 (760)
++++. ++... ..+.|.++|.....+.....-...+..++++|++ ++++ ...++.|.+.| +++.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 98655 54432 1247999997554444433345689999999998 4444 44688899999 77777
Q ss_pred EEEe
Q 004329 262 QSIE 265 (760)
Q Consensus 262 ~~~~ 265 (760)
..+.
T Consensus 336 ~~i~ 339 (352)
T TIGR02658 336 SSVN 339 (352)
T ss_pred eeec
Confidence 7773
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=2e-06 Score=85.25 Aligned_cols=272 Identities=16% Similarity=0.239 Sum_probs=165.4
Q ss_pred ceEeEEeccCC------------CCEEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCcc-------------------
Q 004329 9 YQLSSELRGHE------------DDVRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRK------------------- 54 (760)
Q Consensus 9 ~~l~~~l~gH~------------~~V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~------------------- 54 (760)
|....+++.|. ..|..+.|.+++. ++..+.|.+|++|.+.......
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~ 141 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL 141 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec
Confidence 44666666664 3588899997765 8888999999999876322111
Q ss_pred -----------ceeeeE-eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceE---EEEeCCC-----cc
Q 004329 55 -----------YHSSKI-LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV---QTLQGHK-----LQ 114 (760)
Q Consensus 55 -----------~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~---~~l~~h~-----~~ 114 (760)
..+.+. -..|...|+++.+..+.. .+....|=.|.+|+++-.... --++.+. .-
T Consensus 142 p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E------t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteV 215 (433)
T KOG1354|consen 142 PVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE------TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEV 215 (433)
T ss_pred eeeccccceeeeeeeeeccccceeEeeeeeecCccc------eEeeccceeeeeccccccCCceeEEEccccCHHHHHHH
Confidence 001111 135888899999998887 455567889999998643221 1223332 34
Q ss_pred EEEEEec---CCeEEEEECCCeEEEEECCcee------EEee------------cCCcCeEEEEEeCCCcEEEEECCCcE
Q 004329 115 VTGVTLD---NEDIVSSSVDSTLKRWRKGKLV------EFWE------------AHNAPIQTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 115 V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~------~~~~------------~~~~~v~~v~~~~~~~l~tgs~dg~i 173 (760)
|++..|+ .+.++-.+..|+|++-|++... ..+. .--..|..+.|+++|+++..-.--+|
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltv 295 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTV 295 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecccee
Confidence 6666776 4568899999999999976211 1111 11345888999999998777777899
Q ss_pred EEEeCC---CceEEeecCC------------Cce---EEEEEeCCC-eEEEEeCCCeEEEEecCCceEEEee--cCCCc-
Q 004329 174 KLWKGK---KCAQTFVGHT------------DTV---RGLSVMPGV-GIISASHDCTIRLWALTGQVLMEMV--GHTAI- 231 (760)
Q Consensus 174 ~iwd~~---~~~~~~~~h~------------~~V---~~l~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~- 231 (760)
++||.. ++..++.-|. +.| ..++|+.++ .+++|+.....++++........+. .....
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~ 375 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNM 375 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCC
Confidence 999964 4555555442 233 356777644 4999999999999996433332222 21111
Q ss_pred -EEEEEEeCCCeEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 232 -VYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 232 -v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
...+. .+ ..+.+++......+|- ..+.....+...+|+|...+++...-..+.+|
T Consensus 376 ~~~~~~-k~-~~V~~~g~r~~~~~~v-----d~ldf~kkilh~aWhp~en~ia~aatnnlyif 431 (433)
T KOG1354|consen 376 KPRKVL-KL-RLVSSSGKRKRDEISV-----DALDFRKKILHTAWHPKENSIAVAATNNLYIF 431 (433)
T ss_pred cccccc-cc-eeeecCCCcccccccc-----chhhhhhHHHhhccCCccceeeeeecCceEEe
Confidence 11110 01 1444445444433321 11222334555678888775555555566665
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=1.1e-05 Score=89.38 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=128.5
Q ss_pred eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe-CCC--eEEEEECCCCceEEEEeCCCccEEE
Q 004329 41 TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG-MDT--MVLVWDLGSGEKVQTLQGHKLQVTG 117 (760)
Q Consensus 41 ~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs-~dg--~I~vwd~~~~~~~~~l~~h~~~V~~ 117 (760)
.+.++|.+... ...+..+...+.+..|+|++.. ++..+ .++ .|++||+.+++... +.........
T Consensus 199 ~l~i~d~dG~~------~~~l~~~~~~~~~p~wSPDG~~-----La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~ 266 (448)
T PRK04792 199 QLMIADYDGYN------EQMLLRSPEPLMSPAWSPDGRK-----LAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGA 266 (448)
T ss_pred EEEEEeCCCCC------ceEeecCCCcccCceECCCCCE-----EEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCC
Confidence 56667766332 2344556778999999999984 44443 333 58999998876532 2222223345
Q ss_pred EEec--CCeEE-EEECCCe--EEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EE-EEECCCc--EEEEeCCC-ceEEee
Q 004329 118 VTLD--NEDIV-SSSVDST--LKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IV-SGSSDTT--IKLWKGKK-CAQTFV 186 (760)
Q Consensus 118 l~~~--~~~l~-sgs~dg~--v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~-tgs~dg~--i~iwd~~~-~~~~~~ 186 (760)
..|+ ++.++ +.+.+|. |.+||.. .....+..+........|+|+|+ ++ +...++. |.++|... ....+.
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 6676 45554 4566775 5566764 33444445555567789999988 44 3333444 55556432 233333
Q ss_pred cCCCceEEEEEeCCCe-EEEEe-CCCe--EEEEecCCceEEEeecCCCcEEEEEEeCCC-eE-EEEeCCCc--EEEEe-C
Q 004329 187 GHTDTVRGLSVMPGVG-IISAS-HDCT--IRLWALTGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRF--AKIWK-D 257 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~~-l~s~s-~dg~--I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l-~s~s~Dg~--I~iwd-~ 257 (760)
.+.......+|+|++. ++..+ .++. |.++|+.+.....+... .......|+|+| .+ ++...++. +.+++ .
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2223334568999776 44443 3443 55567665544444322 122345799999 44 44444544 55666 6
Q ss_pred CceEEEEe-cCCcEEEEEEcc
Q 004329 258 GVCVQSIE-HPGCVWDAKFLE 277 (760)
Q Consensus 258 ~~~~~~~~-~~~~v~~v~~~~ 277 (760)
+...+.+. +.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 66666665 345667777776
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=1.1e-05 Score=88.82 Aligned_cols=217 Identities=11% Similarity=-0.022 Sum_probs=111.2
Q ss_pred EeccCCCCEEEEEEcCCCe---EE-EEECCC--eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 14 ELRGHEDDVRGICVCDNVG---IA-TSSRDR--TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~---l~-tgs~Dg--~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.|..+...+.+-.|+|||+ ++ +...+| .|.+.++.+++. ..+....+.....+|+|+++. ++++
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~------~~lt~~~g~~~~p~wSPDG~~----Laf~ 248 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG------KKILALQGNQLMPTFSPRKKL----LAFI 248 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc------eEeecCCCCccceEECCCCCE----EEEE
Confidence 3444556677789999986 32 444444 466667775541 222233444557899999984 2334
Q ss_pred EeCCC----eEEEEECCCC---ceEEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEE--ECC---ceeEEeecCCcC
Q 004329 88 GGMDT----MVLVWDLGSG---EKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRW--RKG---KLVEFWEAHNAP 152 (760)
Q Consensus 88 gs~dg----~I~vwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vw--d~~---~~~~~~~~~~~~ 152 (760)
...+| .+..|++..+ +.......+.......+|+ ++.|+..+ .+|...+| +.. .....+..+...
T Consensus 249 s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~ 328 (428)
T PRK01029 249 SDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN 328 (428)
T ss_pred ECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC
Confidence 43333 3444676542 3333332222333455665 44455544 45554555 331 223333344445
Q ss_pred eEEEEEeCCCc-EEEEEC-C--CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEE-EeC--CCeEEEEecCCceEE
Q 004329 153 IQTVIRIPSGE-IVSGSS-D--TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IIS-ASH--DCTIRLWALTGQVLM 223 (760)
Q Consensus 153 v~~v~~~~~~~-l~tgs~-d--g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s-~s~--dg~I~iwd~~~~~~~ 223 (760)
+....|+|+|+ ++..+. + ..|.+||... ..+.+......+....|+|++. ++. +.. ...|.++|+.+....
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 56677788776 433332 2 3566777432 2233333333456677777655 332 222 245666676655444
Q ss_pred EeecCCCcEEEEEEeCC
Q 004329 224 EMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~ 240 (760)
.+....+.+...+|+|.
T Consensus 409 ~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 409 KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EeecCCCcccCceecCC
Confidence 44444444555566553
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.62 E-value=2.4e-05 Score=94.86 Aligned_cols=228 Identities=17% Similarity=0.166 Sum_probs=144.5
Q ss_pred EEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeC--C------------CccEEEEEec--CCeEEEEE-CC
Q 004329 69 GPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG--H------------KLQVTGVTLD--NEDIVSSS-VD 131 (760)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~--h------------~~~V~~l~~~--~~~l~sgs-~d 131 (760)
..+++.+.+.. ++++-+.++.|++||.. +..+..+.+ . -.....++++ ++.++++. .+
T Consensus 571 ~gvavd~~~g~----lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNR----LFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCe----EEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 45677665432 46666778899999985 444444332 1 1234677776 45555544 55
Q ss_pred CeEEEEECC-ceeEEeecC-----------------CcCeEEEEEeC-CCc-EEEEECCCcEEEEeCCCc-eEEeecC--
Q 004329 132 STLKRWRKG-KLVEFWEAH-----------------NAPIQTVIRIP-SGE-IVSGSSDTTIKLWKGKKC-AQTFVGH-- 188 (760)
Q Consensus 132 g~v~vwd~~-~~~~~~~~~-----------------~~~v~~v~~~~-~~~-l~tgs~dg~i~iwd~~~~-~~~~~~h-- 188 (760)
+.|+++|.. ..+.++.+. -...+.++++| ++. +++.+.++.|++||.... ...+.+.
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 778888864 334333211 11346789998 455 566777899999995432 2222211
Q ss_pred -------------CCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceEEEeec--------------C--------CCc
Q 004329 189 -------------TDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMVG--------------H--------TAI 231 (760)
Q Consensus 189 -------------~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~~~~~--------------h--------~~~ 231 (760)
-.....++++|++. +++-+.++.|++||+.........+ + -..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 12356799999764 5566677999999975432211110 0 112
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-c--------------CCcEEEEEEccCCc-EEEEEcCCcEEEE
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-H--------------PGCVWDAKFLENGD-IVTACSDGVTRIW 293 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~--------------~~~v~~v~~~~~g~-lvt~~~dg~I~vw 293 (760)
..+++++++| .+++-+.+++|++|| .+..+.++. . -.....++++++|+ +++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 4688999999 888888999999999 333333322 1 12577899999999 6666679999999
Q ss_pred eCCCCeee
Q 004329 294 TVHSDKVA 301 (760)
Q Consensus 294 ~~~~~~~~ 301 (760)
|+.+++..
T Consensus 886 d~~~~~~~ 893 (1057)
T PLN02919 886 DLNKGEAA 893 (1057)
T ss_pred ECCCCccc
Confidence 99988753
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=0.00024 Score=76.05 Aligned_cols=251 Identities=10% Similarity=0.078 Sum_probs=152.0
Q ss_pred CCCEEEEEEcCCCe-EEEEEC----CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe-CCC
Q 004329 19 EDDVRGICVCDNVG-IATSSR----DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG-MDT 92 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~----Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs-~dg 92 (760)
......++++|++. |.++.. +|.|..|++.... ..................++++|++. +++++. .+|
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~-----~l~vany~~g 109 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGR-----FLYVANYGGG 109 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSS-----EEEEEETTTT
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCC-----EEEEEEccCC
Confidence 44556788898888 666665 5799999987531 12333334443455667899999987 455554 689
Q ss_pred eEEEEECCC-CceEEE---Ee----------CCCccEEEEEec--CCeEEEEE-CCCeEEEEECCc----ee--EEee-c
Q 004329 93 MVLVWDLGS-GEKVQT---LQ----------GHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKGK----LV--EFWE-A 148 (760)
Q Consensus 93 ~I~vwd~~~-~~~~~~---l~----------~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~~----~~--~~~~-~ 148 (760)
.|.++++.. +..... +. .......++.++ ++++++.. ....|.+|+... .. ..+. .
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence 999999976 433222 21 123456788887 44555443 445788886642 21 1222 3
Q ss_pred CCcCeEEEEEeCCCc--EEEEECCCcEEEEeCC--Cc----eEEeec------CCCceEEEEEeCCCe--EEEEeCCCeE
Q 004329 149 HNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGK--KC----AQTFVG------HTDTVRGLSVMPGVG--IISASHDCTI 212 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~--~~----~~~~~~------h~~~V~~l~~~~~~~--l~s~s~dg~I 212 (760)
.....+.+.|+|+++ +++.-.++.|.+|+.. .. ...... .......|.++|+++ +++...+..|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 455678999999988 4566678889999744 21 111111 112578899999887 4445567789
Q ss_pred EEEecCC---c--eEEEeecCCCcEEEEEEeCCC-eEEEE-eCCCcEEEEe----CCceEEEEe--cCCcEEEEEE
Q 004329 213 RLWALTG---Q--VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK----DGVCVQSIE--HPGCVWDAKF 275 (760)
Q Consensus 213 ~iwd~~~---~--~~~~~~~h~~~v~~v~~~p~~-~l~s~-s~Dg~I~iwd----~~~~~~~~~--~~~~v~~v~~ 275 (760)
.+|+++. . .+..+.......+.+.++|+| +|+++ ..++.|.+|+ ++.+...-. .-....||.|
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999832 2 233343445568999999999 55554 5777899997 444433332 2235566655
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=77.56 Aligned_cols=251 Identities=12% Similarity=-0.018 Sum_probs=156.1
Q ss_pred EECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE-EEeCCCcc
Q 004329 36 SSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ-TLQGHKLQ 114 (760)
Q Consensus 36 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~ 114 (760)
-++...+-+|+.-+.... ..... ..+.|.|..--...++|+.||..|...+|...+.+... ....|...
T Consensus 48 i~~t~sv~i~~~y~N~~~---iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~ 117 (344)
T KOG4532|consen 48 ISKTISVPINSHYSNPKG---IVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND 117 (344)
T ss_pred ccceeeeEeccccCCchh---hEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccc
Confidence 455667788887644311 11111 34555554322223579999999999999998765433 33344443
Q ss_pred EEEE---EecCCeEEEEECCCeEEEEECCceeEEeecCCcC--eEEEEEeCCCc-EEEEECCCcEEEEeCCC----ceE-
Q 004329 115 VTGV---TLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAP--IQTVIRIPSGE-IVSGSSDTTIKLWKGKK----CAQ- 183 (760)
Q Consensus 115 V~~l---~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--v~~v~~~~~~~-l~tgs~dg~i~iwd~~~----~~~- 183 (760)
|+-. +-..-.+..++.|.++++.++..-......|... +.++.++++++ .++.+....|..|.+.. ..+
T Consensus 118 v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 118 VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred hhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 3322 2223348889999999999775444444445443 77899999998 55677778888886432 222
Q ss_pred EeecCCCceEEEEEeCCC-eEEEEeCCCeEEEEecCC--ceE----EEeecCCCcEEEEEEeCCC---eEEEEeCCCcEE
Q 004329 184 TFVGHTDTVRGLSVMPGV-GIISASHDCTIRLWALTG--QVL----MEMVGHTAIVYSIDSHASG---LIVSGSEDRFAK 253 (760)
Q Consensus 184 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~I~iwd~~~--~~~----~~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I~ 253 (760)
.....++.-.+..|+... .|++++.||++.|||++. .+. .+-..|.+.+..+.|++.| +|+..-.-+.+.
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 223345556677888744 499999999999999753 222 1223588999999999877 566556667789
Q ss_pred EEe--CCceEEEEe--------cCC-cEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 254 IWK--DGVCVQSIE--------HPG-CVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 254 iwd--~~~~~~~~~--------~~~-~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
+-| ++.-.+.+. |.. .|..-.|+.++. +.+.. .-.+.=|++.+
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~-e~~~ae~ni~s 332 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN-ELQGAEYNILS 332 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCccccccc-chhhheeeccc
Confidence 998 444444432 322 477777777776 33332 23344455544
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.57 E-value=3.8e-06 Score=80.66 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=140.3
Q ss_pred eCCCeEEEEECCCCc--eEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCc---eeEEeecCCcCeEEEEEeCC--
Q 004329 89 GMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPIQTVIRIPS-- 161 (760)
Q Consensus 89 s~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v~~v~~~~~-- 161 (760)
+....+-+|+.-+.. .+....+-+-...++.-....|+.|+..|...+|.... .......|...|.-+.-.-+
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~ 128 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK 128 (344)
T ss_pred cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc
Confidence 344556777775543 33333332222223333356799999999999997642 22233334433332221112
Q ss_pred CcEEEEECCCcEEEEeCCCceEEeecCCCc--eEEEEEeCCCe-EEEEeCCCeEEEEecC--CceEEE--eecCCCcEEE
Q 004329 162 GEIVSGSSDTTIKLWKGKKCAQTFVGHTDT--VRGLSVMPGVG-IISASHDCTIRLWALT--GQVLME--MVGHTAIVYS 234 (760)
Q Consensus 162 ~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~--V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~~~~~~--~~~h~~~v~~ 234 (760)
-.+..++.|.++++.++......+.-|... +.++++++++. +++.+....|..|.+. ++.+.. ....+..-.+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 237788999999998855444444445443 78999999887 6777778889999874 333322 2344556678
Q ss_pred EEEeCCC-eEEEEeCCCcEEEEe---CCceEEEEe-----cCCcEEEEEEccCCc---EEEEEcCCcEEEEeCCCCeeec
Q 004329 235 IDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-----HPGCVWDAKFLENGD---IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~-----~~~~v~~v~~~~~g~---lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
..|+... .+|++..||++.||| .+.+...+. |.+.+..+.|++.|. ++..-.-+.+.+-|+++++-..
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 8898888 999999999999999 444444442 778999999999776 4455557899999999887554
Q ss_pred h
Q 004329 303 S 303 (760)
Q Consensus 303 ~ 303 (760)
.
T Consensus 289 ~ 289 (344)
T KOG4532|consen 289 V 289 (344)
T ss_pred E
Confidence 3
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=3e-05 Score=85.22 Aligned_cols=230 Identities=10% Similarity=-0.019 Sum_probs=132.9
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC--CeEEEEECCCCceEEEEeCCCccEEE
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD--TMVLVWDLGSGEKVQTLQGHKLQVTG 117 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d--g~I~vwd~~~~~~~~~l~~h~~~V~~ 117 (760)
+.|.+.|.+.+. ...+..+...+.+=.|+|++... .++++...+ ..|++.++.+++.... ....+....
T Consensus 165 ~~l~~~d~dG~~------~~~lt~~~~~~~sP~wSPDG~~~--~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~ 235 (428)
T PRK01029 165 GELWSVDYDGQN------LRPLTQEHSLSITPTWMHIGSGF--PYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLM 235 (428)
T ss_pred ceEEEEcCCCCC------ceEcccCCCCcccceEccCCCce--EEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccc
Confidence 356666766332 12233345566777999998742 022344444 3588889887754332 223344445
Q ss_pred EEec--CCeEEEEEC-CC----eEEEEECC-----ceeEEeecCCcCeEEEEEeCCCc-EEEEE-CCCcEEEE--eCC--
Q 004329 118 VTLD--NEDIVSSSV-DS----TLKRWRKG-----KLVEFWEAHNAPIQTVIRIPSGE-IVSGS-SDTTIKLW--KGK-- 179 (760)
Q Consensus 118 l~~~--~~~l~sgs~-dg----~v~vwd~~-----~~~~~~~~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iw--d~~-- 179 (760)
..|+ ++.|+..+. +| .+..|+.. ........+........|+|||+ ++..+ .+|...+| +..
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 6776 556655442 23 34446542 22233333333446789999998 55444 46655555 332
Q ss_pred -CceEEeecCCCceEEEEEeCCCe-EEEEeCC---CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEE-EEeC--CC
Q 004329 180 -KCAQTFVGHTDTVRGLSVMPGVG-IISASHD---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSE--DR 250 (760)
Q Consensus 180 -~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~-s~s~--Dg 250 (760)
...+.+..+...+....|+|++. ++..+.+ ..|.+||+.+.....+......+....|+|+| .|+ ++.. ..
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 22444555556778889999877 5554433 46899998766666665444567789999999 544 4333 34
Q ss_pred cEEEEe--CCceEEEEecCCcEEEEEEccC
Q 004329 251 FAKIWK--DGVCVQSIEHPGCVWDAKFLEN 278 (760)
Q Consensus 251 ~I~iwd--~~~~~~~~~~~~~v~~v~~~~~ 278 (760)
.|.+|| .++........+.+...+|+|-
T Consensus 396 ~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 396 ELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred eEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 577777 3333333334455667777764
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=4.9e-06 Score=90.71 Aligned_cols=278 Identities=13% Similarity=0.053 Sum_probs=182.9
Q ss_pred CCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC-------CCcEEEEEeC
Q 004329 18 HEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF-------PEGGLVSGGM 90 (760)
Q Consensus 18 H~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~-------~~~~l~sgs~ 90 (760)
|.+.-.++.|+|.|.++-||. ..|.+-|..+-+ .++.+..|...|+.+.|.|..... ..-+++++..
T Consensus 14 ~~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred CcccccccccCccceEEEecC-ceEEEEehhhhh-----hhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 444567889999998777775 578888876443 677888899999999998865322 1225788888
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec------CCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCC-
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD------NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPS- 161 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~------~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~- 161 (760)
.|.|.+||...+..+..+..|..++..++|- ...++.-....++.+|+. |+.............|+.+.|=
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 9999999999998888899999999999883 234888888899999965 5555555555566677888773
Q ss_pred Cc-EEEEECCCcEEEEe-CC--------CceEEeecCCC----------------c---------eEEEEEeCCCe-EEE
Q 004329 162 GE-IVSGSSDTTIKLWK-GK--------KCAQTFVGHTD----------------T---------VRGLSVMPGVG-IIS 205 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd-~~--------~~~~~~~~h~~----------------~---------V~~l~~~~~~~-l~s 205 (760)
.+ +..-+..|.+.+-+ .. +..+.-..|.+ . .-.++|+|.-+ ++-
T Consensus 168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 33 55556666666664 11 11111122222 0 12345677433 555
Q ss_pred EeCCCeEEEEecCCc-eEEEeecCCCcEEEEEEeCCC---eEEEEeCCCcEEEEeCCceEEEEe---------cCCcE--
Q 004329 206 ASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWKDGVCVQSIE---------HPGCV-- 270 (760)
Q Consensus 206 ~s~dg~I~iwd~~~~-~~~~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I~iwd~~~~~~~~~---------~~~~v-- 270 (760)
......+.++|+.-+ ++....-..+.+.-+.+.|++ .+++.-.||.+.+|-...+-..+. ....+
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 556777999998644 444444455666677777876 899999999999997222111111 11122
Q ss_pred ---------EEEEEccCCc--EEEEEcCCcEEEEeCCCCeee
Q 004329 271 ---------WDAKFLENGD--IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 271 ---------~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~~~ 301 (760)
......|... +..--++|.+.+|.+.+++.-
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 2222334422 444556889999999977654
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.52 E-value=8.2e-05 Score=90.31 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=142.4
Q ss_pred EEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeC--------------CCCCeEEEEEeCCCCCCCCcEEE
Q 004329 23 RGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLG--------------HTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 23 ~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~--------------h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
..+++++ ++. +++-+.++.|++||.. +.. ...+.+ +-.....+++.+++. .|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~-----i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-----~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNF-----IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-----LLY 639 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCE-----EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-----EEE
Confidence 3577775 455 7777788999999986 331 111111 112357888888765 344
Q ss_pred E-EeCCCeEEEEECCCCceEEEEeCC-----------------CccEEEEEec--CCe-EEEEECCCeEEEEECCc-eeE
Q 004329 87 S-GGMDTMVLVWDLGSGEKVQTLQGH-----------------KLQVTGVTLD--NED-IVSSSVDSTLKRWRKGK-LVE 144 (760)
Q Consensus 87 s-gs~dg~I~vwd~~~~~~~~~l~~h-----------------~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~~-~~~ 144 (760)
+ -...+.|+++|..++. +.++.+. -.....++++ ++. +++.+.++.|++||... ...
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 4 4456789999987654 3333210 0123567776 344 66677888999998742 222
Q ss_pred EeecC---------------CcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceEE-eec--------------C----
Q 004329 145 FWEAH---------------NAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQT-FVG--------------H---- 188 (760)
Q Consensus 145 ~~~~~---------------~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~~-~~~--------------h---- 188 (760)
.+.+. -...+.++++|++. +++-+.++.|++||....... ..+ +
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 22211 12345789999876 456667799999996542211 110 0
Q ss_pred ----CCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCC--------------CcEEEEEEeCCC-eEEEEeC
Q 004329 189 ----TDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHT--------------AIVYSIDSHASG-LIVSGSE 248 (760)
Q Consensus 189 ----~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~--------------~~v~~v~~~p~~-~l~s~s~ 248 (760)
-....++++.+++. +++-+.+++|++||..+..+..+.+.. .....++++++| .+++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 11246888988776 677778899999998766665554321 256789999999 8888889
Q ss_pred CCcEEEEe
Q 004329 249 DRFAKIWK 256 (760)
Q Consensus 249 Dg~I~iwd 256 (760)
++.|++||
T Consensus 879 Nn~Irvid 886 (1057)
T PLN02919 879 NSLIRYLD 886 (1057)
T ss_pred CCEEEEEE
Confidence 99999999
No 282
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=2.2e-05 Score=87.11 Aligned_cols=203 Identities=12% Similarity=0.007 Sum_probs=120.6
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC---CeEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD---STLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IV 165 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d---g~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~ 165 (760)
.|.++|.+.+.. ..+..+...+....|+ ++.++..+.+ ..|.+|+.. .....+....+.+....|+|+|+ ++
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 478888875543 4455567788888887 5557666543 357888875 22233333344455789999987 44
Q ss_pred -EEECCC--cEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEe-CCC--eEEEEecCCceEEEeecCCCcEEEEEE
Q 004329 166 -SGSSDT--TIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISAS-HDC--TIRLWALTGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 166 -tgs~dg--~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg--~I~iwd~~~~~~~~~~~h~~~v~~v~~ 237 (760)
+.+.+| .|++||... ..+.+..+........|+|++. ++..+ .+| .|+++|+.+.....+...........|
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 455555 577778553 3344555656667788999776 55444 333 577777755444444322233446789
Q ss_pred eCCC-eEEEEeC-CC--cEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEc-CC--cEEEEeCC
Q 004329 238 HASG-LIVSGSE-DR--FAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACS-DG--VTRIWTVH 296 (760)
Q Consensus 238 ~p~~-~l~s~s~-Dg--~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~-dg--~I~vw~~~ 296 (760)
+|+| .++..+. ++ .|.+|| .......+..........|+|||+ ++..+. +| .+.+++.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 9999 5555443 33 477788 332334444333334568999999 444443 33 34555553
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.52 E-value=1.1e-06 Score=89.10 Aligned_cols=161 Identities=14% Similarity=0.268 Sum_probs=106.7
Q ss_pred eEEEEEeCCCcE-EEEECCCcEEEEeCCC--c-eEEee--cCCCceEEEEEeC-CCeEEE---EeCCCeEEEEecCCceE
Q 004329 153 IQTVIRIPSGEI-VSGSSDTTIKLWKGKK--C-AQTFV--GHTDTVRGLSVMP-GVGIIS---ASHDCTIRLWALTGQVL 222 (760)
Q Consensus 153 v~~v~~~~~~~l-~tgs~dg~i~iwd~~~--~-~~~~~--~h~~~V~~l~~~~-~~~l~s---~s~dg~I~iwd~~~~~~ 222 (760)
.+.+..++++++ +.+..++...+++... . .+... .-...-+++.+.. +..... .+....+.+|+....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344556666764 4555555555555221 1 11111 1112223333333 222333 34445566666554555
Q ss_pred EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE--EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCC
Q 004329 223 MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS--IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 223 ~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~--~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~ 297 (760)
..+.||-+.++.++++||+ +++++..|..||+-. ....+.. ++|..-|..++.-++..++++|.|++|++||+.+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence 6677999999999999999 999999999999977 2223333 3589999999998887799999999999999999
Q ss_pred Ceeechhhhhhhhhcc
Q 004329 298 DKVADSLELEAYASEL 313 (760)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (760)
|+.+++..+.+....+
T Consensus 225 gk~L~t~dl~s~~~~i 240 (390)
T KOG3914|consen 225 GKLLDTCDLSSLVIPI 240 (390)
T ss_pred CCcccccchhHhhhhc
Confidence 9999988877665444
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=0.00039 Score=70.41 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC---CCeEEEEECCC--CceEEE--EeCC
Q 004329 39 DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM---DTMVLVWDLGS--GEKVQT--LQGH 111 (760)
Q Consensus 39 Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~---dg~I~vwd~~~--~~~~~~--l~~h 111 (760)
++-|++|++++.... . ....+..+.+..+-++|+|+.+ +|+++-. +|.|..|.++. |+.... ....
T Consensus 15 s~gI~v~~ld~~~g~-l-~~~~~v~~~~nptyl~~~~~~~-----~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGE-L-SLLQLVAELGNPTYLAVNPDQR-----HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeCcccc-c-chhhhccccCCCceEEECCCCC-----EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC
Confidence 467999999844321 1 2223345677889999999987 4666654 47777777654 544222 1122
Q ss_pred CccEEEEEec--CCeEEEEE-CCCeEEEEECC---c--eeEEeecCCcC----------eEEEEEeCCCcEEEEECCC--
Q 004329 112 KLQVTGVTLD--NEDIVSSS-VDSTLKRWRKG---K--LVEFWEAHNAP----------IQTVIRIPSGEIVSGSSDT-- 171 (760)
Q Consensus 112 ~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~---~--~~~~~~~~~~~----------v~~v~~~~~~~l~tgs~dg-- 171 (760)
..+-+.++++ +++++++. ..|.|.++... . .......|.+. +.+..+.|+++++.+..-|
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 2333777776 44565555 45788888552 1 11112233333 7888999999855544433
Q ss_pred cEEEEeCCCceE-----EeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCC--ceEEEeec---------CCCcEE
Q 004329 172 TIKLWKGKKCAQ-----TFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTG--QVLMEMVG---------HTAIVY 233 (760)
Q Consensus 172 ~i~iwd~~~~~~-----~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~--~~~~~~~~---------h~~~v~ 233 (760)
.|.+|+...... .........+.|.|+|+++ .+.+--+++|.+|..+. ..+..+.. -....-
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 577887543211 1113456689999999988 45666799999999754 33333322 235677
Q ss_pred EEEEeCCC-eEEEEe-CCCcEEEEe---CCceEEEEe----cCCcEEEEEEccCCc-EEEEEc-CCcEEEEeCCC
Q 004329 234 SIDSHASG-LIVSGS-EDRFAKIWK---DGVCVQSIE----HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHS 297 (760)
Q Consensus 234 ~v~~~p~~-~l~s~s-~Dg~I~iwd---~~~~~~~~~----~~~~v~~v~~~~~g~-lvt~~~-dg~I~vw~~~~ 297 (760)
.|.++++| +|.++. ....|-+|. .+..+..+. +....+...+++.|+ ++++.. +..|.+|.++.
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 88999999 554443 234677776 333344333 333588999999999 444444 67799998764
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=0.00013 Score=73.66 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=130.9
Q ss_pred CCeEEEEECCCCceEEEEeC---CCccEEEEEecCCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEEeCCCcEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQG---HKLQVTGVTLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIRIPSGEIV 165 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~---h~~~V~~l~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~~~~~~l~ 165 (760)
+|+|..||..+|+.+....- ....+......++.+++++.++.+..||. ++.+..... ...+.......++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecccccc
Confidence 68999999999999888763 22333223336888999999999999996 455555544 2222111244467788
Q ss_pred EEECCCcEEEEeCCCceEEee---cCC---C--ceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCc-----
Q 004329 166 SGSSDTTIKLWKGKKCAQTFV---GHT---D--TVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAI----- 231 (760)
Q Consensus 166 tgs~dg~i~iwd~~~~~~~~~---~h~---~--~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~----- 231 (760)
.++.++.++.+|..+...... ... . ......+. ++.++.+..++.|..+|. +|+.+.....+...
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 888999999999554333332 111 1 11222222 666888888999999995 58887777654422
Q ss_pred -----EEEEEEeCCCeEEEEeCCCc-EEEEe--CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 232 -----VYSIDSHASGLIVSGSEDRF-AKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 232 -----v~~v~~~p~~~l~s~s~Dg~-I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
+.+-....++.++.++.++. +.+ | +++.+.... ...+.......++.++.++.++.|..||..+++...
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 12222333447777777775 555 8 555444333 334444233334447777789999999999998764
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4.3e-07 Score=94.73 Aligned_cols=230 Identities=18% Similarity=0.314 Sum_probs=153.0
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-------CceEEEEeCCCccEEEEEecCCeEEEEEC
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-------GEKVQTLQGHKLQVTGVTLDNEDIVSSSV 130 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~ 130 (760)
...+.+|...|..++-..+.+ -+++++.|.+|++|.++. ..+..++..|+.+|.++.|-.+.-..++.
T Consensus 728 L~nf~GH~~~iRai~AidNEN-----SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-----SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-----ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 456778999898887666555 389999999999999853 24677888999999999997554455667
Q ss_pred CCeEEEEEC--CceeEEe--ecCCcCeEEEEEeCC--Cc-EEE-EECCCcEEEEeCCCceEEe-------ecCCCceEEE
Q 004329 131 DSTLKRWRK--GKLVEFW--EAHNAPIQTVIRIPS--GE-IVS-GSSDTTIKLWKGKKCAQTF-------VGHTDTVRGL 195 (760)
Q Consensus 131 dg~v~vwd~--~~~~~~~--~~~~~~v~~v~~~~~--~~-l~t-gs~dg~i~iwd~~~~~~~~-------~~h~~~V~~l 195 (760)
||.+++||. +..+... ....+.+..+...++ .. +++ ++...+++++|.+.+..+. .+....++++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 999999986 3333321 222333444444443 22 444 4788999999977654322 2345678999
Q ss_pred EEeC-CCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEE-Ee--CCceEEEEe-cCCc
Q 004329 196 SVMP-GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKI-WK--DGVCVQSIE-HPGC 269 (760)
Q Consensus 196 ~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~i-wd--~~~~~~~~~-~~~~ 269 (760)
++.+ +++++.+-..|.|.+.|. +|..+..+.........++.-.+..++....|.++.+ |. .+......+ .+.+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 9998 455999999999999996 5666776666555555555433447888888999999 98 333222222 1112
Q ss_pred EEEEEEcc-CCc-EEEEEcCCcEEEEeC
Q 004329 270 VWDAKFLE-NGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 270 v~~v~~~~-~g~-lvt~~~dg~I~vw~~ 295 (760)
. -|.. -|. +++......+.+|.-
T Consensus 963 a---hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 963 A---HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred h---hhhhccCceeEEeccCcEEEEEec
Confidence 1 1211 233 777777777777753
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=5e-07 Score=62.39 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=35.8
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEe
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWS 46 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd 46 (760)
+++.+++++|++.|++++|+|++. |++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999988 99999999999997
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.46 E-value=0.0001 Score=80.69 Aligned_cols=266 Identities=11% Similarity=0.092 Sum_probs=153.1
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE---EEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP---LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ 106 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~---l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 106 (760)
++.+++++.+|.+.-+|..+++. .|... +......... ..++ .+....++.++.++.+|.++.+|.++|+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~--~~~~~~~~~~~~~~~~~-~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE-IWSVD--LSEKDGWFSKNKSALLS-GGVTVAGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-eeEEc--CCCcccccccccccccc-cccEEECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 55688888899999999987762 22111 1110000000 0000 0000012358888999999999999999988
Q ss_pred EEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCe-----EEEEEeCCCcEEEEECCCcEEEEeCC
Q 004329 107 TLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI-----QTVIRIPSGEIVSGSSDTTIKLWKGK 179 (760)
Q Consensus 107 ~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v-----~~v~~~~~~~l~tgs~dg~i~iwd~~ 179 (760)
..........+....++.++.++.+|.+..+|.. +.+.......... .+-.. .++.++.++.+|.+..+|..
T Consensus 145 ~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 145 QTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEcc
Confidence 7764433223334457788889999999999864 4444443221110 01111 13557778888888888754
Q ss_pred CceEEeecC----C-----CceEEEEEeC---CCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEE
Q 004329 180 KCAQTFVGH----T-----DTVRGLSVMP---GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSG 246 (760)
Q Consensus 180 ~~~~~~~~h----~-----~~V~~l~~~~---~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~ 246 (760)
+....+... . .....+..+| ++.++.++.+|.+..+|. +|+.+.+..- .....+.. .++.++.+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~-~~~~vy~~ 300 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV-DGGRIYLV 300 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE-ECCEEEEE
Confidence 332211110 0 0011111223 677888889999999996 4665544321 11112222 23477788
Q ss_pred eCCCcEEEEe--CCceEEEEec-CCc-EEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 247 SEDRFAKIWK--DGVCVQSIEH-PGC-VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 247 s~Dg~I~iwd--~~~~~~~~~~-~~~-v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+.+|.+..+| +++.+..... ... ..+... -+|.++.++.||.+.+.|..+|+.+...
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 8899999999 5555443321 111 111121 3667889999999999999999876544
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=1.7e-06 Score=82.81 Aligned_cols=188 Identities=13% Similarity=0.159 Sum_probs=114.9
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce------------EEEEeCCCc--cEEEEEecCCeEEEEECCCe
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK------------VQTLQGHKL--QVTGVTLDNEDIVSSSVDST 133 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~------------~~~l~~h~~--~V~~l~~~~~~l~sgs~dg~ 133 (760)
+..+.++.+. .|+++..++.+......++.+ .+.+..|+. +...+...++.++++..||.
T Consensus 39 ~~~~~~v~~~------~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 39 LSKVSLSAEY------ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEeechhhh------eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCce
Confidence 5555555444 377777777666655443322 223333332 33333334677999999999
Q ss_pred EEEEECCceeEE---eecCCcCeEEEEEeCCCcEEEEECCCcE------EEEeCCCceEEe--ecCCCceEEEEEeCCC-
Q 004329 134 LKRWRKGKLVEF---WEAHNAPIQTVIRIPSGEIVSGSSDTTI------KLWKGKKCAQTF--VGHTDTVRGLSVMPGV- 201 (760)
Q Consensus 134 v~vwd~~~~~~~---~~~~~~~v~~v~~~~~~~l~tgs~dg~i------~iwd~~~~~~~~--~~h~~~V~~l~~~~~~- 201 (760)
+.+.+.++..+. .......--+.+....+.++....-|.+ +.|+.+...... ....+.|.+++-+|..
T Consensus 113 ~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq 192 (319)
T KOG4714|consen 113 LAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ 192 (319)
T ss_pred EEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc
Confidence 999987652211 1111111122333334555554444444 444433221111 1123449999999943
Q ss_pred -eEEEEeCCCeEEEEecCC--ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe-CCceE
Q 004329 202 -GIISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCV 261 (760)
Q Consensus 202 -~l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~ 261 (760)
.+++|+.||.+-+||.+. .+...+..|+..++.+-|+|.. .|+++++||.+..|| .++.+
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l 258 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL 258 (319)
T ss_pred cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE
Confidence 388899999999999754 4555577899999999999987 999999999999999 43433
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.41 E-value=0.00048 Score=71.58 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=80.6
Q ss_pred cCCCceEEEEEeCCCe-EEEEeCCC-eEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEE
Q 004329 187 GHTDTVRGLSVMPGVG-IISASHDC-TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQ 262 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~~-l~s~s~dg-~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~ 262 (760)
+|...|+-..+..+.. ++.|..|| .+-++|..+..+..+.+.-+.|.++..+++| .++.+.....+.+.| .....+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 4555566655555443 77888888 7888888888888888878888888888888 677766666677777 323333
Q ss_pred EEe--cCCcEEEEEEccCCc-EEEEEcC----CcEEEEeCCCCeeechh
Q 004329 263 SIE--HPGCVWDAKFLENGD-IVTACSD----GVTRIWTVHSDKVADSL 304 (760)
Q Consensus 263 ~~~--~~~~v~~v~~~~~g~-lvt~~~d----g~I~vw~~~~~~~~~~~ 304 (760)
.+. ..+-|+.++|+|+++ ++.+--+ ..|+++|+..++.....
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 443 345788888888888 4444333 46788888877765433
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.40 E-value=0.00059 Score=69.28 Aligned_cols=203 Identities=14% Similarity=0.128 Sum_probs=132.8
Q ss_pred EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEE
Q 004329 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEF 145 (760)
Q Consensus 70 ~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~ 145 (760)
+.+|.+.... ++++-...+.|+.|+..+++... +.... ...+.+. ++.++.+..++...+ |.. +....
T Consensus 4 gp~~d~~~g~----l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~~~~-d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGR----LYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGIAVV-DPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTE----EEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCEEEE-ETTTTEEEEE
T ss_pred ceEEECCCCE----EEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCceEEE-ecCCCcEEEE
Confidence 5677774432 46666678999999998776533 33222 4555554 677888877665544 754 22222
Q ss_pred eec-----CCcCeEEEEEeCCCcEEEEEC-C--------CcEEEEeCCCceEEeecCCCceEEEEEeCCCe--EEEEeCC
Q 004329 146 WEA-----HNAPIQTVIRIPSGEIVSGSS-D--------TTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG--IISASHD 209 (760)
Q Consensus 146 ~~~-----~~~~v~~v~~~~~~~l~tgs~-d--------g~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~d 209 (760)
... .......+++.++|.+..+.. . |.+..++...........-...+.|+|+|++. +++-+..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccc
Confidence 221 345678899999999655443 2 45777776644444444556788999999876 4566778
Q ss_pred CeEEEEecC--CceE---EEe---ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEecC-CcEEEEEEc-c
Q 004329 210 CTIRLWALT--GQVL---MEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP-GCVWDAKFL-E 277 (760)
Q Consensus 210 g~I~iwd~~--~~~~---~~~---~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~-~~v~~v~~~-~ 277 (760)
+.|..+++. +..+ ..+ .......-.+++..+| +.++....+.|.+++ .++.+..+..+ ..+++++|. +
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEEST
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECC
Confidence 889999873 3211 112 2222358899999999 666666788999999 88888888876 599999994 5
Q ss_pred CCc
Q 004329 278 NGD 280 (760)
Q Consensus 278 ~g~ 280 (760)
+.+
T Consensus 236 ~~~ 238 (246)
T PF08450_consen 236 DGK 238 (246)
T ss_dssp TSS
T ss_pred CCC
Confidence 555
No 292
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.4e-05 Score=76.52 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=144.8
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCe
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDST 133 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~ 133 (760)
....+.+|...|..++|+|... |++..++.+..|.|.|+++...+..+..| ..+++++|+ .+.++.|-.+|.
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~----GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNE----GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred hhhcccccchhhhhhccCcccc----ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 3456778899999999999876 56899999999999999999998888877 889999997 344999999999
Q ss_pred EEEEECCceeEE---eec--CCcCeEEEEEeCCC------cEEEEECCCcEEEEeCC----CceEEee-cCCCceEEEEE
Q 004329 134 LKRWRKGKLVEF---WEA--HNAPIQTVIRIPSG------EIVSGSSDTTIKLWKGK----KCAQTFV-GHTDTVRGLSV 197 (760)
Q Consensus 134 v~vwd~~~~~~~---~~~--~~~~v~~v~~~~~~------~l~tgs~dg~i~iwd~~----~~~~~~~-~h~~~V~~l~~ 197 (760)
|.+||.+.+... +.+ ...+|..++..+.+ .++++... .+..|... ....... +..+...++..
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 999998643322 222 23455555544432 23333322 24455421 1111111 12344445555
Q ss_pred eC-CCe-EEEEeCCCe------E--EEEecCCceEEEee-cC-CCc------EEEEEEeCCC--eEEEEeCCCcEEEEe-
Q 004329 198 MP-GVG-IISASHDCT------I--RLWALTGQVLMEMV-GH-TAI------VYSIDSHASG--LIVSGSEDRFAKIWK- 256 (760)
Q Consensus 198 ~~-~~~-l~s~s~dg~------I--~iwd~~~~~~~~~~-~h-~~~------v~~v~~~p~~--~l~s~s~Dg~I~iwd- 256 (760)
.+ .+. +++.-.+.+ | ++-+.+|..+.... ++ .+. -..+.-.++. .+..++..+.+.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 54 222 333322111 1 11112333332211 11 000 0111122333 566677778899999
Q ss_pred -CCceEEEEecCCcEEEEEEcc-CCc-EEEEEcCCcEEEEeCCC
Q 004329 257 -DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 257 -~~~~~~~~~~~~~v~~v~~~~-~g~-lvt~~~dg~I~vw~~~~ 297 (760)
..+.++++....+|.+++... +|. ++..-.|..++||..++
T Consensus 419 ~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 419 HSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred chhheeeecccCcceeecceeecCCcchhhheecceEEEEecCC
Confidence 888999999889999998765 343 77777888999987653
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.28 E-value=0.0018 Score=65.78 Aligned_cols=208 Identities=13% Similarity=0.069 Sum_probs=133.0
Q ss_pred EEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEe-CCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 24 GICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWI-SPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 24 ~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
+++|.+ ++. +++-...+.|..|+..++. ...+.... ...+++. +++ .++.+..++ +.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~------~~~~~~~~--~~G~~~~~~~g------~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE------VEVIDLPG--PNGMAFDRPDG------RLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE------EEEEESSS--EEEEEEECTTS------EEEEEETTC-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe------EEEEecCC--CceEEEEccCC------EEEEEEcCc-eEEEecC
Confidence 567887 666 5666678999999988553 12222222 6777777 454 366666655 4555998
Q ss_pred CCceEEEEeC-----CCccEEEEEec-CCeEEEE-ECC--------CeEEEEECCceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 101 SGEKVQTLQG-----HKLQVTGVTLD-NEDIVSS-SVD--------STLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 101 ~~~~~~~l~~-----h~~~V~~l~~~-~~~l~sg-s~d--------g~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
+++....... .......++++ ++.+..+ ... |.+..++...........-.....++|+|+++ +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchhe
Confidence 8865443332 34567788887 4444444 333 45777777644444444455678999999987 4
Q ss_pred -EEEECCCcEEEEeCC--Cc----eEEeec---CCCceEEEEEeCCCeE-EEEeCCCeEEEEecCCceEEEeecCCCcEE
Q 004329 165 -VSGSSDTTIKLWKGK--KC----AQTFVG---HTDTVRGLSVMPGVGI-ISASHDCTIRLWALTGQVLMEMVGHTAIVY 233 (760)
Q Consensus 165 -~tgs~dg~i~iwd~~--~~----~~~~~~---h~~~V~~l~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~ 233 (760)
++-+..+.|..|+.. .. .+.+.. ..+....+++..++.+ ++....+.|.++|.+|+.+..+......++
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPT 228 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEE
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEE
Confidence 466677888888743 21 122322 2234789999998874 455568999999999999888876667999
Q ss_pred EEEEe-CCC--eEEEE
Q 004329 234 SIDSH-ASG--LIVSG 246 (760)
Q Consensus 234 ~v~~~-p~~--~l~s~ 246 (760)
+++|- ++. ++++.
T Consensus 229 ~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 229 NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEESTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEe
Confidence 99995 443 44443
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.28 E-value=0.00052 Score=69.20 Aligned_cols=210 Identities=12% Similarity=0.068 Sum_probs=127.0
Q ss_pred CccccCCCceEeEEeccC--CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGH--EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH--~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|..+|..+.+.+.+..-- .....+..+..++.+++++.++.+..||..+++ ....... ...+.......++
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~-----~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK-----VLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSE-----EEEEEEC-SSCGGSGEEEETT-
T ss_pred EEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC-----EEEEeec-cccccceeeeccc-
Confidence 356788888888887531 222232244466678888999999999998776 2222221 1111111122222
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEE-eCCC-----ccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-QGHK-----LQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHN 150 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-~~h~-----~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~ 150 (760)
.++.++.++.++.+|..+|+.+... .... .......+.++.++.+..++.+..+|.. +.+.......
T Consensus 78 -----~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 78 -----RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp -----EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred -----ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4788888999999999999998884 4321 1223344558889999999999999954 5555554433
Q ss_pred cC----------eEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-C
Q 004329 151 AP----------IQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-G 219 (760)
Q Consensus 151 ~~----------v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~ 219 (760)
.. +..-....++.++.++.++.+..+|.......+......+..+....++.++.++.++.+..||+. |
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 21 122333334567777777753333866655444333333444333446667777789999999964 4
Q ss_pred ceE
Q 004329 220 QVL 222 (760)
Q Consensus 220 ~~~ 222 (760)
+.+
T Consensus 233 ~~~ 235 (238)
T PF13360_consen 233 KVV 235 (238)
T ss_dssp EEE
T ss_pred CEE
Confidence 443
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.23 E-value=2e-05 Score=77.25 Aligned_cols=225 Identities=17% Similarity=0.276 Sum_probs=142.8
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-----eEEEEeCCCc------------cEEEEEec----C
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-----KVQTLQGHKL------------QVTGVTLD----N 122 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-----~~~~l~~h~~------------~V~~l~~~----~ 122 (760)
....|+++.|...+. ++++|...|.|.+|.-+... ....+++|.. .|..+.|- -
T Consensus 25 ead~ItaVefd~tg~-----YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETGL-----YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEeccccc-----eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 356789999988877 79999999999999865432 2333555642 46667663 2
Q ss_pred CeEEEEECCCeEEEEECCce-eEEeec----------CCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEe-ecCCC
Q 004329 123 EDIVSSSVDSTLKRWRKGKL-VEFWEA----------HNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTF-VGHTD 190 (760)
Q Consensus 123 ~~l~sgs~dg~v~vwd~~~~-~~~~~~----------~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~-~~h~~ 190 (760)
..++..+.|.+|++|.+.+. +..... ..+++++..-..-++ ..-.|..|.. ++.+.+ ..|.-
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr--ls~hd~iiaa----~p~rvyaNaH~y 173 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR--LSEHDEIIAA----KPCRVYANAHPY 173 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc--ccccceEEEe----ccceecccccee
Confidence 23888999999999976422 211110 011221110000000 0001111111 122223 46888
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEecC---C-ceEEEeecCC-----CcEEEEEEeCCC--eEEEEeCCCcEEEEeCC-
Q 004329 191 TVRGLSVMPGVGIISASHDCTIRLWALT---G-QVLMEMVGHT-----AIVYSIDSHASG--LIVSGSEDRFAKIWKDG- 258 (760)
Q Consensus 191 ~V~~l~~~~~~~l~s~s~dg~I~iwd~~---~-~~~~~~~~h~-----~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~~- 258 (760)
.|.++.+..+...+..+.|=.|.+|++. + -.+..+..|. ..|++..|+|.. .+.-.+..|.|++-|.+
T Consensus 174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred EeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8999999998887778889999999963 2 2344455554 468889999976 67777889999999821
Q ss_pred --ceE---EEE-------e------cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 259 --VCV---QSI-------E------HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 259 --~~~---~~~-------~------~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
-|. ..+ . -..+|..+.|+++|+++.+-+=-+|++||.+..+
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 111 111 1 1347889999999998888888899999998544
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.22 E-value=0.0011 Score=65.23 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=51.1
Q ss_pred EEEcCCCeEEEEECCCeEEEEeCCCCCCccc-eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc
Q 004329 25 ICVCDNVGIATSSRDRTVRFWSLDPSDKRKY-HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE 103 (760)
Q Consensus 25 v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~ 103 (760)
++.+++|+++..-.|..|.|=....+ .... ......+.-.-.=.-++|+|++. +|+.+...|+|+++|+.. .
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Dd-f~si~~kcqVpkD~~PQWRkl~WSpD~t-----lLa~a~S~G~i~vfdl~g-~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDD-FSSIIGKCQVPKDPNPQWRKLAWSPDCT-----LLAYAESTGTIRVFDLMG-S 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCC-chheeEEEecCCCCCchheEEEECCCCc-----EEEEEcCCCeEEEEeccc-c
Confidence 45678889888888888888765522 1111 11111222233346799999998 789999999999999974 4
Q ss_pred eEEEEe
Q 004329 104 KVQTLQ 109 (760)
Q Consensus 104 ~~~~l~ 109 (760)
.+..+.
T Consensus 76 ~lf~I~ 81 (282)
T PF15492_consen 76 ELFVIP 81 (282)
T ss_pred eeEEcC
Confidence 444443
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.22 E-value=2.9e-05 Score=74.46 Aligned_cols=136 Identities=15% Similarity=0.285 Sum_probs=87.4
Q ss_pred CCCcEEEEECCCcEEEEeCCCceE---Eee-cCCCceEEEEEeCCCeEEEEeCCCe------EEEEecCCceEEEee---
Q 004329 160 PSGEIVSGSSDTTIKLWKGKKCAQ---TFV-GHTDTVRGLSVMPGVGIISASHDCT------IRLWALTGQVLMEMV--- 226 (760)
Q Consensus 160 ~~~~l~tgs~dg~i~iwd~~~~~~---~~~-~h~~~V~~l~~~~~~~l~s~s~dg~------I~iwd~~~~~~~~~~--- 226 (760)
++..++++..||.+.+++.++..+ ... .|.+. -+.++...+.++.+..-|. .+.|+++. +.++.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p--~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDP--IKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccc--cccccccc
Confidence 456699999999999998765222 111 12211 1222222334444443333 44444432 11111
Q ss_pred cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeCCceEE---EE-ecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCC
Q 004329 227 GHTAIVYSIDSHASG--LIVSGSEDRFAKIWKDGVCVQ---SI-EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~~~~~~---~~-~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~ 298 (760)
.....|.+++.+|.. .+++|++||.+-+||...... .+ .|+.++|.+-|+|... +++++.||.+..||..+.
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 112348999999876 889999999999999333321 22 2889999999999665 999999999999998763
No 298
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=0.0016 Score=62.84 Aligned_cols=94 Identities=7% Similarity=-0.034 Sum_probs=59.4
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEE-EEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPL-AWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH 111 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h 111 (760)
++.|+..|.+++-+..++.+ ...+.. .+.|.+- ...+++ +++..|+.|++.+..|..+..++...+..
T Consensus 66 VV~GCy~g~lYfl~~~tGs~-----~w~f~~-~~~vk~~a~~d~~~-----glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTGSQ-----IWNFVI-LETVKVRAQCDFDG-----GLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred EEEEEccCcEEEEEecchhh-----eeeeee-hhhhccceEEcCCC-----ceEEEecCCCcEEEecccccceEEecccC
Confidence 88899999999999998852 111111 1112221 123333 37999999999999999999998887643
Q ss_pred CccEEE--EEecCCeEEEEECCCeEEEE
Q 004329 112 KLQVTG--VTLDNEDIVSSSVDSTLKRW 137 (760)
Q Consensus 112 ~~~V~~--l~~~~~~l~sgs~dg~v~vw 137 (760)
.....+ ++.-++.++.+...|.+.--
T Consensus 135 G~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 135 GGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred CceeccceecCCCceEEEEeccceEEEE
Confidence 332222 23325556666666665443
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.17 E-value=6.5e-06 Score=56.71 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=28.4
Q ss_pred ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 220 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 220 ~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+++..+.+|...|++++|+|++ .+++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4566777777888888888777 777778888888776
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.0044 Score=63.02 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=150.6
Q ss_pred cCCCCEEEEEEcCCCe-EEEEEC---CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe-CC
Q 004329 17 GHEDDVRGICVCDNVG-IATSSR---DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG-MD 91 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~---Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs-~d 91 (760)
.+.+..+-++|+|+++ |.++-. +|.|-.|.++... ...........-..+-+.+++++++. +++++. ..
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~~p~yvsvd~~g~-----~vf~AnY~~ 110 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGSPPCYVSVDEDGR-----FVFVANYHS 110 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCCCCeEEEECCCCC-----EEEEEEccC
Confidence 5677888999999997 777754 4778888777421 11212222222233337888999887 455554 56
Q ss_pred CeEEEEECCC-Cce---EEEEeCCCcc----------EEEEEec--CCeEEEEEC-CCeEEEEECCceeE-----EeecC
Q 004329 92 TMVLVWDLGS-GEK---VQTLQGHKLQ----------VTGVTLD--NEDIVSSSV-DSTLKRWRKGKLVE-----FWEAH 149 (760)
Q Consensus 92 g~I~vwd~~~-~~~---~~~l~~h~~~----------V~~l~~~--~~~l~sgs~-dg~v~vwd~~~~~~-----~~~~~ 149 (760)
|.|.++-++. |.+ +..+ .|.+. +.+..++ ++++++..- --.|.+|+...... ..-..
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8999999865 432 2222 24433 6666676 344544432 23477776641111 11133
Q ss_pred CcCeEEEEEeCCCcE--EEEECCCcEEEEeCCCce---EEeec---------CCCceEEEEEeCCCeEEEEeCCC--eEE
Q 004329 150 NAPIQTVIRIPSGEI--VSGSSDTTIKLWKGKKCA---QTFVG---------HTDTVRGLSVMPGVGIISASHDC--TIR 213 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l--~tgs~dg~i~iwd~~~~~---~~~~~---------h~~~V~~l~~~~~~~l~s~s~dg--~I~ 213 (760)
...-+.+.|+|++++ +++--+++|-+|...... ..++. .....-.|.++++++++-+|+-| .|-
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 556788999999994 466779999999744321 12211 23456788899999987777754 466
Q ss_pred EEec--CCceEEE---eecCCCcEEEEEEeCCC-eEEEEe-CCCcEEEEe----CCceEEEEe--cCCcEEEEEEc
Q 004329 214 LWAL--TGQVLME---MVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK----DGVCVQSIE--HPGCVWDAKFL 276 (760)
Q Consensus 214 iwd~--~~~~~~~---~~~h~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd----~~~~~~~~~--~~~~v~~v~~~ 276 (760)
+|.+ .+..+.. ...+....+...+++++ +|+++. .+..|.+|. +|.+..... ......|+.|.
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 6664 2332222 22344557888999999 555555 456788887 444333322 22344556553
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.12 E-value=0.0037 Score=74.84 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=140.4
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE----ECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEE
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW----DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw----d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vw 137 (760)
..+.|.++.|.++.. .++.+..+|.|.+. +..+.. +.....-...|.+++|+ ...++..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~-----~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-----SLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCC-----cEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 457899999999987 48899999999999 544332 22233346789999998 4448888888888877
Q ss_pred ECC-ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEe-------------CCCc---eEEeecCCCceEEEEEeCC
Q 004329 138 RKG-KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWK-------------GKKC---AQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 138 d~~-~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd-------------~~~~---~~~~~~h~~~V~~l~~~~~ 200 (760)
... .++.....+.... ..++.++.+..+.=.-|. ...+ ...+. +.+.-..++|..|
T Consensus 148 t~~fd~i~E~~l~~~~~------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD 220 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDF------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD 220 (928)
T ss_pred eccceEEEEeecCcccc------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence 432 3333222221110 001233333322211111 0000 01122 4456678999988
Q ss_pred Ce-EEEEeC---C---CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeC---CCcEEEEe-CCceEEEEec--
Q 004329 201 VG-IISASH---D---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK-DGVCVQSIEH-- 266 (760)
Q Consensus 201 ~~-l~s~s~---d---g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~---Dg~I~iwd-~~~~~~~~~~-- 266 (760)
+. |++.+- . +.+|||+-+|........-.+--.+++|.|.| ++|+... ...|.+|. +|-....|..
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 87 554443 2 57999998887666655555556788999999 6766653 45678887 5555555542
Q ss_pred ---CCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 267 ---PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 267 ---~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
...|..+.|++|+.+++..-...|.+|....-.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 348999999999995554555559999987655
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.08 E-value=3.1e-05 Score=78.87 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=86.0
Q ss_pred EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce----EEEEeCCCccEEEEEec--CCeEEEEE---CCCeEEEEECC
Q 004329 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK----VQTLQGHKLQVTGVTLD--NEDIVSSS---VDSTLKRWRKG 140 (760)
Q Consensus 70 ~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~----~~~l~~h~~~V~~l~~~--~~~l~sgs---~dg~v~vwd~~ 140 (760)
.+..++.+. +++.+..+....+++...... ..... -...-+++.+. +.....+. ....+.+|...
T Consensus 67 ~~~~s~~~~-----llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 67 LVLTSDSGR-----LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccCCCce-----EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 344445554 577777777777777654432 11111 11222233332 22333332 33344445433
Q ss_pred -ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceE-EeecCCCceEEEEEeCCCeEEEEeCCCeEEEE
Q 004329 141 -KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIRLW 215 (760)
Q Consensus 141 -~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iw 215 (760)
.+....-+|-.-+..++++||++ ++++..|..||+-.... .+. -.-||+.-|..++..++..++++|.|+++++|
T Consensus 141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 33444557777888888888877 66888888888765322 222 23468888888888777667888888888888
Q ss_pred ec-CCceEEE
Q 004329 216 AL-TGQVLME 224 (760)
Q Consensus 216 d~-~~~~~~~ 224 (760)
|+ +|+.+.+
T Consensus 221 d~~sgk~L~t 230 (390)
T KOG3914|consen 221 DITSGKLLDT 230 (390)
T ss_pred ecccCCcccc
Confidence 85 4555543
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.014 Score=56.73 Aligned_cols=188 Identities=11% Similarity=0.107 Sum_probs=109.0
Q ss_pred EcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce
Q 004329 27 VCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK 104 (760)
Q Consensus 27 ~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 104 (760)
..++.+ ++.||..+.+.--|..+++. .|+. --...+.+-+.. -++ +++.|+..|.+++.+.++|..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~-~We~-----ilg~RiE~sa~v-vgd-----fVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNL-IWEA-----ILGVRIECSAIV-VGD-----FVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcE-Eeeh-----hhCceeeeeeEE-ECC-----EEEEEEccCcEEEEEecchhh
Confidence 344444 88888888888888887752 1111 113334443333 233 589999999999999999988
Q ss_pred EEEEeCCC-ccE-EEEEecCCeEEEEECCCeEEEEECCc--eeEEeecCCcCeEEEEEeC-CCcEEEEECCCcEEEEeCC
Q 004329 105 VQTLQGHK-LQV-TGVTLDNEDIVSSSVDSTLKRWRKGK--LVEFWEAHNAPIQTVIRIP-SGEIVSGSSDTTIKLWKGK 179 (760)
Q Consensus 105 ~~~l~~h~-~~V-~~l~~~~~~l~sgs~dg~v~vwd~~~--~~~~~~~~~~~v~~v~~~~-~~~l~tgs~dg~i~iwd~~ 179 (760)
.+.+.... -.+ -.++++++.+..|+.|++.+..|... ++...+.......+-+..+ ++.+..+...|.+.--...
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 77765322 112 23566789999999999999998864 3433332222222333444 4556666666655444322
Q ss_pred C-ceEEeecC--CCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEee
Q 004329 180 K-CAQTFVGH--TDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMV 226 (760)
Q Consensus 180 ~-~~~~~~~h--~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 226 (760)
. ...++-.| ..+|.+--..-+..+..+.-||.+.-+|-.|+.+.++.
T Consensus 166 ~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~ 215 (354)
T KOG4649|consen 166 PYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPA 215 (354)
T ss_pred CCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeec
Confidence 2 12222222 12332211111333566667777777777676666443
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=9.8e-05 Score=75.20 Aligned_cols=238 Identities=13% Similarity=0.127 Sum_probs=135.7
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..+-.+++.+.-+.+|...|++++|+|... +..++.+.+|+|.|+++.. ....+..| ..+++++|.-+...
T Consensus 177 ~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----~vssy~a~-~~~wSC~wDlde~h- 249 (463)
T KOG1645|consen 177 KLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----VVSSYIAY-NQIWSCCWDLDERH- 249 (463)
T ss_pred EeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-----eeeheecc-CCceeeeeccCCcc-
Confidence 345556676777889999999999998766 8889999999999998665 44555556 88999999988865
Q ss_pred CCcEEEEEeCCCeEEEEECCCCce-EEEEeC--CCccEEEEEe-------c-CCeEEEEECCCeEEEEEC----CceeEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEK-VQTLQG--HKLQVTGVTL-------D-NEDIVSSSVDSTLKRWRK----GKLVEF 145 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~--h~~~V~~l~~-------~-~~~l~sgs~dg~v~vwd~----~~~~~~ 145 (760)
+++.|...|.|.+||++..+- +..+.+ ...+|..++. . ++.++..+.+ +..|+. +.....
T Consensus 250 ---~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~v 324 (463)
T KOG1645|consen 250 ---VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCV 324 (463)
T ss_pred ---eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcc
Confidence 599999999999999976532 222221 2344554443 2 3334433333 344543 222222
Q ss_pred eec-CCcCeEEEEEeCCCc--EEEEECCC------c----------EEEEeCCCce---EEeecCCCceEEEEEeCCCe-
Q 004329 146 WEA-HNAPIQTVIRIPSGE--IVSGSSDT------T----------IKLWKGKKCA---QTFVGHTDTVRGLSVMPGVG- 202 (760)
Q Consensus 146 ~~~-~~~~v~~v~~~~~~~--l~tgs~dg------~----------i~iwd~~~~~---~~~~~h~~~V~~l~~~~~~~- 202 (760)
.+. ..+.+.++.+.+... +++.-.+. . -.+|..+... ..-+-++.. .+.-.+++.
T Consensus 325 lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~--ai~~~~~nn~ 402 (463)
T KOG1645|consen 325 LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQ--AIRAVEDNNY 402 (463)
T ss_pred cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccccccc--ceeccccccE
Confidence 221 233444445444222 23322211 0 1111111000 000001111 111122334
Q ss_pred -EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCC-C--eEEEEeCCCcEEEEe
Q 004329 203 -IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS-G--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 203 -l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~-~--~l~s~s~Dg~I~iwd 256 (760)
+..+.....+.+||.. .+.++++ ....+|..++.... + +|++-. |..++||.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l-~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTL-ALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred EEEecCCcceeEEeccchhheeeec-ccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 4455666889999975 4555555 44588888886653 3 666555 44588876
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6.6e-05 Score=77.36 Aligned_cols=202 Identities=17% Similarity=0.127 Sum_probs=140.3
Q ss_pred cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC-CCeEE
Q 004329 17 GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM-DTMVL 95 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~-dg~I~ 95 (760)
-|.+.|+.+..+....+.+++.||.++.|...... .......+..|-..|.+++.+-++. ++.+++. |..++
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~is--GvEfVKhFraHL~~I~sl~~S~dg~-----L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRIS--GVEFVKHFRAHLGVILSLAVSYDGW-----LFRSVEDPDHSVK 79 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCcc--ceeehhhhHHHHHHHHhhhccccce-----eEeeccCccccee
Confidence 48888888877766669999999999999865312 2334556677888899998888876 5677677 99999
Q ss_pred EEECCCCceEEEEe--CCCccEEEEEecCC---e-EEEEECCCeEEEEECC----ceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 96 VWDLGSGEKVQTLQ--GHKLQVTGVTLDNE---D-IVSSSVDSTLKRWRKG----KLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 96 vwd~~~~~~~~~l~--~h~~~V~~l~~~~~---~-l~sgs~dg~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
++|+++-..+..++ .-.+.++++.-.+. . -++.-.+|.+.++|.. .....-.-|..+|.++.+.+.+. +
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 99998766543333 22233332222232 2 3334467889999764 34445567999999999999877 6
Q ss_pred EEEECCCcEEEEeCCCce-----------------EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEe
Q 004329 165 VSGSSDTTIKLWKGKKCA-----------------QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEM 225 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~~~-----------------~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~ 225 (760)
++....|.|..|...... ..+........++.++|++. +.+-+.|..|++++.. |+.++.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 778889999999854211 01122345678999999766 8888899999999974 4444443
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00011 Score=81.33 Aligned_cols=175 Identities=12% Similarity=0.104 Sum_probs=120.5
Q ss_pred CccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE-EeecCC
Q 004329 112 KLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ-TFVGHT 189 (760)
Q Consensus 112 ~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~-~~~~h~ 189 (760)
...++|+++++..++-|+-+|.+++++..........|... ..+|. +++||.||+|.+....+... +.....
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 34567788889999999999999999875443444445433 33455 88999999999886443222 223455
Q ss_pred CceEEEEEeCC------CeEEEEeCCCeEEEEec---CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CC
Q 004329 190 DTVRGLSVMPG------VGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG 258 (760)
Q Consensus 190 ~~V~~l~~~~~------~~l~s~s~dg~I~iwd~---~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~ 258 (760)
.++.+++++|+ +++++|+.-| +.++.- .......+....++|.++.|..+ ++|-++.+| |++|| .+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCC-cEEEecccc
Confidence 78999999995 3499999999 777763 22222245566789999999866 666666666 99999 44
Q ss_pred ceEEEEecC-------CcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 259 VCVQSIEHP-------GCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 259 ~~~~~~~~~-------~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
..+..++.+ .-...+.|.++.+++.|- ..+|+|..++
T Consensus 190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred ceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEEEEEEe
Confidence 455555422 134567888777666664 4578888887
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0026 Score=69.57 Aligned_cols=196 Identities=9% Similarity=-0.056 Sum_probs=104.0
Q ss_pred CEEEEEEcCCCe--EEEEEC---CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC--Ce
Q 004329 21 DVRGICVCDNVG--IATSSR---DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD--TM 93 (760)
Q Consensus 21 ~V~~v~~~~~~~--l~tgs~---Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d--g~ 93 (760)
.+..-.|+|+|+ ++..+. +..|.++|+.+++ ...+....+......|+|++.. ++++.+.+ ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~------~~~lt~~~g~~~~~~~SPDG~~----la~~~~~~g~~~ 258 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK------KEKIASSQGMLVVSDVSKDGSK----LLLTMAPKGQPD 258 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc------EEEEecCCCcEEeeEECCCCCE----EEEEEccCCCcE
Confidence 677899999986 443343 3568888987665 1223234556667889999974 34455444 56
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEE-CCCe--EEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EEE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDST--LKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~t 166 (760)
|+++|+.+++.. .+..+........|+ ++.++..+ ..+. |.++|.. .....+..... ....|+|+|+ ++.
T Consensus 259 Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 259 IYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVY 335 (419)
T ss_pred EEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEE
Confidence 888898777643 343333322334565 45554444 3443 4444553 11212211111 1247888887 433
Q ss_pred EECC---------CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeC-CC--eEEEEecCCceEEEeecCCC
Q 004329 167 GSSD---------TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASH-DC--TIRLWALTGQVLMEMVGHTA 230 (760)
Q Consensus 167 gs~d---------g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-dg--~I~iwd~~~~~~~~~~~h~~ 230 (760)
.+.. ..|.+.|... ..+.+... .......|+||+. ++..+. .+ .+.+.+++|.....+....+
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 3322 2456666432 23333332 2233567888766 333332 22 35566677766555544333
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.0013 Score=69.95 Aligned_cols=283 Identities=11% Similarity=0.128 Sum_probs=151.7
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEEC-----------CCeEEEEeCCCCCCccceeeeEeeCCCCCeE
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSR-----------DRTVRFWSLDPSDKRKYHSSKILLGHTSFVG 69 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~-----------Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~ 69 (760)
..|--++|..++.+. |. .|.-+.|||..+ |+|-|. ...++|||+.+|...... ..+. ....+.
T Consensus 234 ~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF--~~~~-~~~~~W 308 (698)
T KOG2314|consen 234 ALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF--PVIK-SPYLKW 308 (698)
T ss_pred eeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce--eccC-CCcccc
Confidence 346666666666664 43 588899999998 888763 257999999988732211 1111 222222
Q ss_pred -EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECC-------CeEEEEEC--
Q 004329 70 -PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVD-------STLKRWRK-- 139 (760)
Q Consensus 70 -~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~d-------g~v~vwd~-- 139 (760)
-..|+.++. +++.-. ...|.||+..+..++..-.-.-..|....|++..-+.+-|- ..+.+-..
T Consensus 309 P~frWS~DdK-----y~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 309 PIFRWSHDDK-----YFARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred ceEEeccCCc-----eeEEec-cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc
Confidence 357888887 344443 36799998765433322222334566667764321111100 01111111
Q ss_pred CceeEEeecCCcCeEEEEEeCCCcEEEEECC-----------CcEEEEeCCCceE--EeecCCCceEEEEEeCC-CeEEE
Q 004329 140 GKLVEFWEAHNAPIQTVIRIPSGEIVSGSSD-----------TTIKLWKGKKCAQ--TFVGHTDTVRGLSVMPG-VGIIS 205 (760)
Q Consensus 140 ~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~d-----------g~i~iwd~~~~~~--~~~~h~~~V~~l~~~~~-~~l~s 205 (760)
...+++..-+.-.=+.+.|-.+|..++.--| ..+.|+.+++... ....-...|...+|-|. ++|++
T Consensus 383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 1222222223222234455556654332211 1233444332111 22235577888999994 44444
Q ss_pred EeC---CCeEEEEecCC-----ceEEEeecCCCcEEEEEEeCCC-eEEEE---eCCCcEEEEeCC-ceEEEEecCC--cE
Q 004329 206 ASH---DCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHASG-LIVSG---SEDRFAKIWKDG-VCVQSIEHPG--CV 270 (760)
Q Consensus 206 ~s~---dg~I~iwd~~~-----~~~~~~~~h~~~v~~v~~~p~~-~l~s~---s~Dg~I~iwd~~-~~~~~~~~~~--~v 270 (760)
-+. ..++.+|-+.. ..+..+. ....+.+.|+|.| +++.+ |..|.+.++|.. .-.+...++. ..
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a 540 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA 540 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc
Confidence 332 35688887542 1222222 2567889999999 44443 567889999933 2233333332 56
Q ss_pred EEEEEccCCc-EEEEEc------CCcEEEEeCCC
Q 004329 271 WDAKFLENGD-IVTACS------DGVTRIWTVHS 297 (760)
Q Consensus 271 ~~v~~~~~g~-lvt~~~------dg~I~vw~~~~ 297 (760)
+.+.|.|.|+ ++++++ |.--++|++..
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7899999999 455554 44456666543
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.97 E-value=0.00014 Score=81.29 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=105.3
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
++-|+....+..+|+.+.+ ..+...-..+.|.-+.. ++. ++++|...|+|.+-|..+.+.++++..|+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~-----e~r~~~v~a~~v~imR~--Nnr-----~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEK-----ETRTTNVSASGVTIMRY--NNR-----NLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred eeecchhhheeeeecccce-----eeeeeeccCCceEEEEe--cCc-----EEEeecccceEEeecCCcCceeeeeeccc
Confidence 5555555566666666443 22222222333444443 222 57888888888888888888888888888
Q ss_pred ccEEEEEecCCeEEEEECCC---------eEEEEECCce--eEEeecCCcCeEEEEEeCC--CcEEEEECCCcEEEEe--
Q 004329 113 LQVTGVTLDNEDIVSSSVDS---------TLKRWRKGKL--VEFWEAHNAPIQTVIRIPS--GEIVSGSSDTTIKLWK-- 177 (760)
Q Consensus 113 ~~V~~l~~~~~~l~sgs~dg---------~v~vwd~~~~--~~~~~~~~~~v~~v~~~~~--~~l~tgs~dg~i~iwd-- 177 (760)
+.+..+...++.+++|+..+ -|+|||++.. +..+.-+.++ .-+.|+|. .++++++..|...+-|
T Consensus 218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 88888888888888887543 3677776522 2222222222 33556664 3477777777777777
Q ss_pred -CCCc---eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEe
Q 004329 178 -GKKC---AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWA 216 (760)
Q Consensus 178 -~~~~---~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd 216 (760)
...+ ...+......+.++++++++. ++.|..+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2222 122223334477777777555 77777777777775
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.8e-05 Score=79.09 Aligned_cols=194 Identities=20% Similarity=0.194 Sum_probs=137.0
Q ss_pred CCccEEEEEec-CCeEEEEECCCeEEEEECC-----ceeEEeecCCcCeEEEEEeCCCc-EEEEEC-CCcEEEEeCCCce
Q 004329 111 HKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNAPIQTVIRIPSGE-IVSGSS-DTTIKLWKGKKCA 182 (760)
Q Consensus 111 h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~-dg~i~iwd~~~~~ 182 (760)
|...|+.+... .+.+++++.||.++.|... +.+..+..|...+.+++.+-++. +.+++. |..++++|....-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 77777777666 7789999999999999543 34445667888899999998988 456666 9999999844311
Q ss_pred ----EEeecCCCceEEEEEeCCCe---E-EEEeCCCeEEEEecCC---ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCC
Q 004329 183 ----QTFVGHTDTVRGLSVMPGVG---I-ISASHDCTIRLWALTG---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 183 ----~~~~~h~~~V~~l~~~~~~~---l-~s~s~dg~I~iwd~~~---~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
..+..-.+.+. ...+++.. + ++.-.+|.+.++|-.+ +....-.-|..+|.++.+.+.+ .+++....|
T Consensus 88 minmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred hhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 11111112221 22233322 2 2344678999999533 2333344699999999999998 888999999
Q ss_pred cEEEEe-CC-------ceEEEE----------ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 251 FAKIWK-DG-------VCVQSI----------EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 251 ~I~iwd-~~-------~~~~~~----------~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.|.-|. .+ .....+ +......++.|+|+|. +.+-+.|..||++.+.+|+++..++
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999998 32 011111 1345789999999998 8888899999999999999887665
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0014 Score=73.31 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=118.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCcc-EEEEEecCC--eEEEEECCCe-----EEEEECCc--------ee--EE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQ-VTGVTLDNE--DIVSSSVDST-----LKRWRKGK--------LV--EF 145 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~-V~~l~~~~~--~l~sgs~dg~-----v~vwd~~~--------~~--~~ 145 (760)
.++.|+.+|.|.+.+- +-+.++.++.+... |..+...++ .+++.+.|+. +++|+..+ +. ..
T Consensus 37 ~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~r 115 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHR 115 (933)
T ss_pred eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeee
Confidence 6999999999988874 24455677777766 555555444 5777777654 89997642 22 11
Q ss_pred eec-----CCcCeEEEEEeCCCc-EEEEECCCcEEEEeC---C-CceEE--eecCCCceEEEEEeCCCe-EEEEeCCCeE
Q 004329 146 WEA-----HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKG---K-KCAQT--FVGHTDTVRGLSVMPGVG-IISASHDCTI 212 (760)
Q Consensus 146 ~~~-----~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~---~-~~~~~--~~~h~~~V~~l~~~~~~~-l~s~s~dg~I 212 (760)
..+ ...++.+++++.+-. +++|-.+|.|..+.. + ...+. ......+|+++.+..++. ++-...-..|
T Consensus 116 i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V 195 (933)
T KOG2114|consen 116 IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQV 195 (933)
T ss_pred eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEeccee
Confidence 112 255788888888754 788999999999851 1 12222 223467899999988766 3455556679
Q ss_pred EEEecCCce--EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 213 RLWALTGQV--LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 213 ~iwd~~~~~--~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+|.++|+. ...+..|...+.|..+++.. .+++++.. .+.+|+
T Consensus 196 ~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~ 241 (933)
T KOG2114|consen 196 MLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYD 241 (933)
T ss_pred EEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEc
Confidence 999988776 44566788899999998876 46666544 488888
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.94 E-value=0.00019 Score=80.29 Aligned_cols=171 Identities=13% Similarity=0.189 Sum_probs=106.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~ 161 (760)
.++.|+....+..+|+.+.+..+...-....|+-++.+++.+.+|...|+|.+-|.. +.++++..|.+.|..+... .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~-G 227 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ-G 227 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc-C
Confidence 467777777788888888777776665555688888888889999999999888875 6778888888888777654 2
Q ss_pred CcEEEEEC---------CCcEEEEeCCCceE--EeecCCCceEEEEEeC--CCeEEEEeCCCeEEEEec---CCceEEE-
Q 004329 162 GEIVSGSS---------DTTIKLWKGKKCAQ--TFVGHTDTVRGLSVMP--GVGIISASHDCTIRLWAL---TGQVLME- 224 (760)
Q Consensus 162 ~~l~tgs~---------dg~i~iwd~~~~~~--~~~~h~~~V~~l~~~~--~~~l~s~s~dg~I~iwd~---~~~~~~~- 224 (760)
+.+++|+. |..|++||++.... .+.-+.++ .-+.|+| ..++++++..|...+-|. ..-....
T Consensus 228 NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 33666654 45567777654221 22222222 3345556 344777777777777662 2211111
Q ss_pred -eecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 225 -MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 225 -~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+....+.+..+++++++ .++.|..+|.|.+|.
T Consensus 307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22223345555555555 555555555555554
No 313
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.00061 Score=57.77 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=76.1
Q ss_pred eEEEEEeC---CC--eEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCCceEEEEec
Q 004329 192 VRGLSVMP---GV--GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEH 266 (760)
Q Consensus 192 V~~l~~~~---~~--~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 266 (760)
|+++++.. ++ .|++||.|..||+|+-. +.+.++. -...|.+++-...+.++.+-.+|+|-+|+....+..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKS 79 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKS 79 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeecc
Confidence 67777776 32 39999999999999833 4454443 456788888777789999999999999998788888887
Q ss_pred CCcEEEEEEcc-CC--c--EEEEEcCCcEEE
Q 004329 267 PGCVWDAKFLE-NG--D--IVTACSDGVTRI 292 (760)
Q Consensus 267 ~~~v~~v~~~~-~g--~--lvt~~~dg~I~v 292 (760)
...++++++.. +| . +++|-++|.|-+
T Consensus 80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 80 KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 77677777654 33 3 999999998753
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=2.1e-05 Score=78.34 Aligned_cols=140 Identities=20% Similarity=0.233 Sum_probs=99.2
Q ss_pred EEEECCCcEEEEeCCCceEEeecCCCceEEEEEeC-CCeEEEEeCCCeEEEEecC------CceEEEeecCCCcEEEEEE
Q 004329 165 VSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALT------GQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~------~~~~~~~~~h~~~v~~v~~ 237 (760)
++.+.+..+-+-|..+.....-...+.|.++.|.. +..++.|+..|.|..+|++ +.+.+.+ -|.+.|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 44555666777775554443333667788888887 5558899999999999974 2344433 58999999988
Q ss_pred eC-CC-eEEEEeCCCcEEEEe--CCce---EEEEecCCcEEEEEEc-----c-CCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 238 HA-SG-LIVSGSEDRFAKIWK--DGVC---VQSIEHPGCVWDAKFL-----E-NGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 238 ~p-~~-~l~s~s~Dg~I~iwd--~~~~---~~~~~~~~~v~~v~~~-----~-~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
.. ++ .|.+.+.+|+|++|| .-++ ++... +.|+..+.. + +|.+++++.|...|||.++.+.++.++
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 77 45 899999999999999 2233 44433 233333322 2 344889999999999999999999887
Q ss_pred hhh
Q 004329 305 ELE 307 (760)
Q Consensus 305 ~~~ 307 (760)
...
T Consensus 385 pf~ 387 (425)
T KOG2695|consen 385 PFP 387 (425)
T ss_pred CCC
Confidence 644
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=3.1e-05 Score=77.14 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=107.8
Q ss_pred EEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce------EEeecCCCceEEEEEe
Q 004329 126 VSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA------QTFVGHTDTVRGLSVM 198 (760)
Q Consensus 126 ~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~------~~~~~h~~~V~~l~~~ 198 (760)
++.+.+..+-+-+........-...+.|.+..|...+. ++.|+..|.|..+|++... ...--|...|+++...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 55666666766666533333333667788888888555 6799999999999966431 1233488999998887
Q ss_pred C--CCeEEEEeCCCeEEEEecC----CceEEEeecCCCcEEEEE--EeCCC-eEEEEeCCCcEEEEe--CCceEEEEecC
Q 004329 199 P--GVGIISASHDCTIRLWALT----GQVLMEMVGHTAIVYSID--SHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP 267 (760)
Q Consensus 199 ~--~~~l~s~s~dg~I~iwd~~----~~~~~~~~~h~~~v~~v~--~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~ 267 (760)
. +..+++.+.+|+|++||.+ +..+.++.||...-.-+- +.+.. .++++|.|...|||. .+.++.++..+
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6 4459999999999999974 344888889865443333 33443 899999999999998 78888888755
Q ss_pred C-----cEEEEEEc
Q 004329 268 G-----CVWDAKFL 276 (760)
Q Consensus 268 ~-----~v~~v~~~ 276 (760)
. -+++++|.
T Consensus 388 ~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 388 YSASEVDIPSVAFD 401 (425)
T ss_pred Cccccccccceehh
Confidence 4 34556654
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.89 E-value=0.0077 Score=59.50 Aligned_cols=211 Identities=9% Similarity=0.068 Sum_probs=119.8
Q ss_pred EEEEeCCCeEEEEECCCC--ceEEEE---eCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecC-------
Q 004329 85 LVSGGMDTMVLVWDLGSG--EKVQTL---QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAH------- 149 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~--~~~~~l---~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~------- 149 (760)
+++.-.|..|.+-..+.. ..+.+. +.....-..++|+ +..++.+...|+|+++|.. ..+..+...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~ 90 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDL 90 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCcc
Confidence 777778888877765443 222222 2233445678887 4448889999999999974 444433321
Q ss_pred CcCeEEEEEeCCC-------cEEEEECCCcEEEEeC--CC-----ceEEee--c-CCCceEEEEEeCCCe-EEEEeC-CC
Q 004329 150 NAPIQTVIRIPSG-------EIVSGSSDTTIKLWKG--KK-----CAQTFV--G-HTDTVRGLSVMPGVG-IISASH-DC 210 (760)
Q Consensus 150 ~~~v~~v~~~~~~-------~l~tgs~dg~i~iwd~--~~-----~~~~~~--~-h~~~V~~l~~~~~~~-l~s~s~-dg 210 (760)
...|..+.|.+-. .+++-..+|.++-|-+ ++ ..+.+. . +...|.++.++|+.+ |+.|+. ..
T Consensus 91 ~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 91 SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 3456666666532 3777778888877642 11 222332 2 467899999999766 444443 32
Q ss_pred eEEEEecCCceEEEeecCCCcEEEEEEeCCC---eEEEEeCCCcE------EEEeCCc-eEEE--EecCCcEEEEEEccC
Q 004329 211 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFA------KIWKDGV-CVQS--IEHPGCVWDAKFLEN 278 (760)
Q Consensus 211 ~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~---~l~s~s~Dg~I------~iwd~~~-~~~~--~~~~~~v~~v~~~~~ 278 (760)
.-..+. .....+++-.+..+. ..++..+|+.. .+|.... .... -.....|..+..+||
T Consensus 171 ~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 171 QDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred CCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 100110 111222222222222 22222223221 2233111 0111 124568999999999
Q ss_pred Cc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 279 GD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|. +++...+|.|.+|++.+-++.....
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 99 7888889999999998877665444
No 317
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.89 E-value=0.0034 Score=65.53 Aligned_cols=210 Identities=15% Similarity=0.128 Sum_probs=133.4
Q ss_pred CCCeEEEEECCCeEEEEeCCCCCCccceeeeEee---CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceE
Q 004329 29 DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL---GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKV 105 (760)
Q Consensus 29 ~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 105 (760)
.||+-+.=+..|.|.+||.++....+...-..+. .....+.-+.|..+-.-.+..+++..|. |...+.+...+-.+
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 3556344455678999998865532221110111 0112222222222111111224666655 66777666544333
Q ss_pred EEEeCCCccEEEEEec--CCeEEEEECCC-eEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 004329 106 QTLQGHKLQVTGVTLD--NEDIVSSSVDS-TLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK 180 (760)
Q Consensus 106 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg-~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~ 180 (760)
+. +|...|.-..+. ++.++.|..|| .+-++|.+ .....+...-+.|.++..+++|+ ++.+-....+.++|+.+
T Consensus 355 qv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 355 QV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred Ec--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 22 466667666664 56799999999 89999986 44577778888999999999999 55666666777778654
Q ss_pred ceEE--eecCCCceEEEEEeCCCe-EEEEeCC----CeEEEEecCCceEEEeecCCCcEEEEEEeCCC
Q 004329 181 CAQT--FVGHTDTVRGLSVMPGVG-IISASHD----CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 181 ~~~~--~~~h~~~V~~l~~~~~~~-l~s~s~d----g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
.... -+...+-|+...|+|+++ ++-+--+ ..|+++|+.+..+.......+.=++-+|.|++
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 3332 234567899999999888 5555444 46999999988777777666666777888998
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.88 E-value=0.0028 Score=73.57 Aligned_cols=259 Identities=11% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
.+.|.++.|.-+.. ++.+..+|.|.+-|..+.. ......-.+.|.+++|+|+.. .++..+..+++.+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee-----~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEE-----LLALITGRQTLLFM 136 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCc-----EEEEEeCCcEEEEE
Confidence 36899999997777 9999999999999877543 222333478899999999998 57777777777664
Q ss_pred ECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC-------CceeEEee-----cCCcCeEEEEEeCCCcEE
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK-------GKLVEFWE-----AHNAPIQTVIRIPSGEIV 165 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~-------~~~~~~~~-----~~~~~v~~v~~~~~~~l~ 165 (760)
+- +..++..-+-|.. ....+.++.++|...=.-+.- ++.....+ ...+.=++|.|-.||.++
T Consensus 137 T~-~f~~i~E~~L~~d-----~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 137 TK-DFEPIAEKPLDAD-----DERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred ec-cccchhccccccc-----cccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 42 2333222111110 000223455554442211110 00000000 011222468899999744
Q ss_pred EE-----ECC-CcEEEEeCCCceEEe-ecCCCceEEEEEeCCCe-EEEE---eCCCeEEEEecCCceEEEe----ecCCC
Q 004329 166 SG-----SSD-TTIKLWKGKKCAQTF-VGHTDTVRGLSVMPGVG-IISA---SHDCTIRLWALTGQVLMEM----VGHTA 230 (760)
Q Consensus 166 tg-----s~d-g~i~iwd~~~~~~~~-~~h~~~V~~l~~~~~~~-l~s~---s~dg~I~iwd~~~~~~~~~----~~h~~ 230 (760)
+. ..+ +.|++||........ .....-=.+++|-|.|. +++- .+|+.|.++.-+|-.-..+ .....
T Consensus 211 AVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 33 234 789999966333322 22233345789999665 4443 4567899998766443332 22334
Q ss_pred cEEEEEEeCCC-eEEE---EeCCCcEEEEeCCc----eEEEEecCCcEEEEEEccCCc--EEEEEcCCcEEEEeC
Q 004329 231 IVYSIDSHASG-LIVS---GSEDRFAKIWKDGV----CVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTV 295 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s---~s~Dg~I~iwd~~~----~~~~~~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~ 295 (760)
.+..++|+.++ .|+. ......|++|-.+. ..+.+..+.... +.|+|.-. +..-+.+|...++++
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 48999999998 6665 55556699998443 334444444332 77887443 555556666666554
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.85 E-value=0.0082 Score=69.93 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=133.1
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG- 140 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~- 140 (760)
....|.++.|..+... ++.+..+|.|.+-|.++.... ....-...|.+++|+ ...++..+.++++.+-...
T Consensus 67 gd~~i~s~~fl~d~~~-----i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-----ICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEecccce-----EEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 3468999999988874 788889999999988766432 223346789999998 4457778888888775432
Q ss_pred ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEe---CC----CceEEee-----cCCCceEEEEEeCCCeEEEE--
Q 004329 141 KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWK---GK----KCAQTFV-----GHTDTVRGLSVMPGVGIISA-- 206 (760)
Q Consensus 141 ~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd---~~----~~~~~~~-----~h~~~V~~l~~~~~~~l~s~-- 206 (760)
.++..... ...-.+.+.++.++..+.=.-+. .+ +.+...+ ...+.=.+|+|.-|+.+++.
T Consensus 141 ~~i~E~~L------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 141 EPIAEKPL------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred cchhcccc------ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 11111110 11111223344444433222221 00 0000000 11223346889888863333
Q ss_pred ---eCC-CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEE---eCCCcEEEEe-CCceEEEEe-----cCCcEEE
Q 004329 207 ---SHD-CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSG---SEDRFAKIWK-DGVCVQSIE-----HPGCVWD 272 (760)
Q Consensus 207 ---s~d-g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~---s~Dg~I~iwd-~~~~~~~~~-----~~~~v~~ 272 (760)
-.+ +.|++||..|..-..-......-.+++|-|.| .+++- +.|+.|.++. +|-....+. ....+..
T Consensus 215 ~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred EeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 334 89999998754443333444555789999999 66654 3566799998 444333332 2234999
Q ss_pred EEEccCCcEEEE---EcCCc-EEEEeCCCCe
Q 004329 273 AKFLENGDIVTA---CSDGV-TRIWTVHSDK 299 (760)
Q Consensus 273 v~~~~~g~lvt~---~~dg~-I~vw~~~~~~ 299 (760)
++|+.+++++++ +..+. |++|.+..-+
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeE
Confidence 999999994433 44444 9999987654
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.0097 Score=66.85 Aligned_cols=265 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred CCCeEEEEECCCeEEEEeCCCCCCccceeeeEee--CCCCCeE--EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce
Q 004329 29 DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL--GHTSFVG--PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK 104 (760)
Q Consensus 29 ~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~--~h~~~V~--~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 104 (760)
.++.+..++.++.+.-.|..+++.. +....... .+...+. .+... + .+.++.++.+|.|+.+|.++|+.
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~g~~~~-~-----~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVL-WRYDPKLPADRGCCDVVNRGVAYW-D-----PRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhh-ceeCCCCCccccccccccCCcEEc-c-----CCeEEEecCCCeEEEEECCCCCE
Confidence 3666888888999999999887632 21110000 0000000 01111 1 03588899999999999999999
Q ss_pred EEEEeCCCcc-----E-EEEEecCCeEEEEEC---------CCeEEEEEC--CceeEEeecCC-----------------
Q 004329 105 VQTLQGHKLQ-----V-TGVTLDNEDIVSSSV---------DSTLKRWRK--GKLVEFWEAHN----------------- 150 (760)
Q Consensus 105 ~~~l~~h~~~-----V-~~l~~~~~~l~sgs~---------dg~v~vwd~--~~~~~~~~~~~----------------- 150 (760)
+......... + .+..+.++.++.++. +|.+..+|. ++.+..+....
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 8887643321 1 122334566666653 577777776 34444433211
Q ss_pred ---cCeE-EEEEeC-CCcEEEEECCC------------------cEEEEeCCCceEEeec----CCC----ceEEEEEe-
Q 004329 151 ---APIQ-TVIRIP-SGEIVSGSSDT------------------TIKLWKGKKCAQTFVG----HTD----TVRGLSVM- 198 (760)
Q Consensus 151 ---~~v~-~v~~~~-~~~l~tgs~dg------------------~i~iwd~~~~~~~~~~----h~~----~V~~l~~~- 198 (760)
..++ ...+.+ .+.++.++.++ .+.-+|..+....... |.. ......+.
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 1121 123333 35577776665 5777776554443331 110 00001111
Q ss_pred ----CCC---eEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEE------------------eCCCcE
Q 004329 199 ----PGV---GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSG------------------SEDRFA 252 (760)
Q Consensus 199 ----~~~---~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~------------------s~Dg~I 252 (760)
.+. .++.++.+|.+...|. +|+.+...... ...+..+| +.++.+ ..+|.+
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 111 3777888999999996 67777654321 01122233 222221 134556
Q ss_pred EEEe--CCceEEEEecC---------CcEE--EEEEccCCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 253 KIWK--DGVCVQSIEHP---------GCVW--DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 253 ~iwd--~~~~~~~~~~~---------~~v~--~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.-.| +++.+...... .+.. .+.. .++.+++++.||.++.+|.++|+.+.+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 6666 55555544422 1111 1121 23347888899999999999999876544
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.018 Score=62.98 Aligned_cols=241 Identities=10% Similarity=-0.006 Sum_probs=118.4
Q ss_pred eEEEEeCCCC-----CCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE
Q 004329 41 TVRFWSLDPS-----DKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV 115 (760)
Q Consensus 41 ~i~iWd~~~~-----~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V 115 (760)
.|+..|+... ........+.+.........+.++|++. +++.+.||.-.++.....+.... +.-
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr------~v~V~g~geY~iyt~~~~r~k~~-----G~g 71 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR------FVLVCGDGEYEIYTALAWRNKAF-----GSG 71 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS------EEEEEETTEEEEEETTTTEEEEE-----EE-
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC------EEEEEcCCEEEEEEccCCccccc-----Cce
Confidence 4555665543 1122223344444566788999999987 44557788888888544433222 223
Q ss_pred EEEEec-CCeEEEEECCCeEEEEECCcee--EEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCce
Q 004329 116 TGVTLD-NEDIVSSSVDSTLKRWRKGKLV--EFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTV 192 (760)
Q Consensus 116 ~~l~~~-~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V 192 (760)
....|. .+.+++-...++|.++..-+.. ..++.. ..+..+.. |.++....++.|.+||..+......-.-.+|
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~v 147 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSAV 147 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E-
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCCC
Confidence 345565 5678888889999997432111 122221 12333332 7766555666899999665433333333458
Q ss_pred EEEEEeCCCeEEEEeCCCeEEEEecCCc------------eEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCCce
Q 004329 193 RGLSVMPGVGIISASHDCTIRLWALTGQ------------VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVC 260 (760)
Q Consensus 193 ~~l~~~~~~~l~s~s~dg~I~iwd~~~~------------~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~ 260 (760)
..+.|++++.+++-..+..+.+++.+.+ ....+..-...|.+.+|..+-++.+ +.. .++-+=.|..
T Consensus 148 k~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYt-T~~-~lkYl~~Ge~ 225 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYT-TSN-HLKYLVNGET 225 (443)
T ss_dssp EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE--TT-EEEEEETTEE
T ss_pred cEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEE-cCC-eEEEEEcCCc
Confidence 9999999877665556778888886555 4444444467788888887733333 333 5666544443
Q ss_pred EEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 261 VQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 261 ~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
...-....++.=+.+.+... +.....|+.|..+.++..
T Consensus 226 ~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 226 GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 22222244555566666433 666677777777776543
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.006 Score=68.46 Aligned_cols=198 Identities=12% Similarity=0.185 Sum_probs=123.5
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC-----eE
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT-----MV 94 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg-----~I 94 (760)
.|+|+ ++++. ++.|+.||.|.+.+-. +.....++.+...+...-|.-+... +|++.+.|+ .+
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~~~~~~~----~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLYILNKQN----FLFSVGEDEQGNPVLL 94 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhhcccCce----EEEEEeecCCCCceEE
Confidence 44443 44444 9999999988877643 2233555666655333333444432 577777665 48
Q ss_pred EEEECCCC------ceEE--EEeC-----CCccEEEEEec--CCeEEEEECCCeEEEEE--C----CceeEEeecCCcCe
Q 004329 95 LVWDLGSG------EKVQ--TLQG-----HKLQVTGVTLD--NEDIVSSSVDSTLKRWR--K----GKLVEFWEAHNAPI 153 (760)
Q Consensus 95 ~vwd~~~~------~~~~--~l~~-----h~~~V~~l~~~--~~~l~sgs~dg~v~vwd--~----~~~~~~~~~~~~~v 153 (760)
++|+++.- .++. .+.. ...++++++.+ -..+++|-.+|.|..+. . +...........+|
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence 99998533 2331 1222 24567888887 44599999999999983 2 22222233446799
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCC-Cc--eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCce-EEEee-
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGK-KC--AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQV-LMEMV- 226 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~--~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~-~~~~~- 226 (760)
+.+.+..++. ++-...-..|.+|.+. +. ......|...++|..+++... +++++ +..+.+|+.+++. ...+.
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred eeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecC
Confidence 9999999887 3444455678888743 22 334677888999999998666 55544 5568999976543 33343
Q ss_pred cCCCc
Q 004329 227 GHTAI 231 (760)
Q Consensus 227 ~h~~~ 231 (760)
+|...
T Consensus 254 g~kk~ 258 (933)
T KOG2114|consen 254 GEKKE 258 (933)
T ss_pred CCeEE
Confidence 44433
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.71 E-value=0.1 Score=56.96 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=61.0
Q ss_pred cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.....+.+++++|+. .++.|+.||+|.+|| ...........-.++.++|+|+|. +++|++.|.+.+||+.-.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 578899999999999 999999999999999 334444445666889999999999 7777788999999987543
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.71 E-value=2.4e-05 Score=83.96 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=127.8
Q ss_pred CCCEEEEEEcCCC--e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----CC
Q 004329 19 EDDVRGICVCDNV--G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG----MD 91 (760)
Q Consensus 19 ~~~V~~v~~~~~~--~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs----~d 91 (760)
...+.|+++.-+. . ++.|..+|.|-+-....... .......+|....++++|++-+.. .|++|- .|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---Ss~E~tp~~ar~Ct~lAwneLDtn----~LAagldkhrnd 128 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---SSAEVTPGYARPCTSLAWNELDTN----HLAAGLDKHRND 128 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc---ccceecccccccccccccccccHH----HHHhhhhhhccc
Confidence 3457788765332 3 88999999999988763321 123355678899999999997553 366663 45
Q ss_pred CeEEEEECCCC--ceEE--EEeC-CCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEEeC-CC
Q 004329 92 TMVLVWDLGSG--EKVQ--TLQG-HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIP-SG 162 (760)
Q Consensus 92 g~I~vwd~~~~--~~~~--~l~~-h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~-~~ 162 (760)
..+.|||+.++ .+.. .+.+ ......+++|. ...+++|.....++++|++ .+.......+..+..+.+.| .+
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC
Confidence 67999999876 2221 1222 23344567775 4458888888899999987 33333333444667778888 55
Q ss_pred cEEEEECCCcEEEEeC-CC---ceEEeec----CCCceEEEEEeC--CCeEEEEeCC-CeEEEEec
Q 004329 163 EIVSGSSDTTIKLWKG-KK---CAQTFVG----HTDTVRGLSVMP--GVGIISASHD-CTIRLWAL 217 (760)
Q Consensus 163 ~l~tgs~dg~i~iwd~-~~---~~~~~~~----h~~~V~~l~~~~--~~~l~s~s~d-g~I~iwd~ 217 (760)
..++...||.|-+||. ++ +.+.... ....+..++|+| .+.+++.+.| ++|+.+|+
T Consensus 209 nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 209 NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 5777777999999993 32 2222222 223589999999 4557777665 78999996
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.68 E-value=0.0091 Score=64.76 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=33.1
Q ss_pred CcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec
Q 004329 150 NAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL 217 (760)
Q Consensus 150 ~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~ 217 (760)
...+.+++++|+.. ++.|+.||.|.+||.......+....-.++.++|+|++. +++|+..|.+.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 34455555555433 555555555555554444443333444445555555443 444444455555553
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0092 Score=68.78 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=101.4
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCcc-EEEEEec-------CCeEEEEECCCeEEEEECCce---eEEee----cCC
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQ-VTGVTLD-------NEDIVSSSVDSTLKRWRKGKL---VEFWE----AHN 150 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~-V~~l~~~-------~~~l~sgs~dg~v~vwd~~~~---~~~~~----~~~ 150 (760)
........|+-.|++.|+.+..++.|... |..++.+ +...+.|-.+..+..||.+-. +..-. ...
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 33345688999999999999999987754 7777653 345888999999999997621 11111 234
Q ss_pred cCeEEEEEeCCCcEEEEECCCcEEEEe-CCC-ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec
Q 004329 151 APIQTVIRIPSGEIVSGSSDTTIKLWK-GKK-CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL 217 (760)
Q Consensus 151 ~~v~~v~~~~~~~l~tgs~dg~i~iwd-~~~-~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~ 217 (760)
....|++-..+|.+++|+.+|.||+|| ++. ....+.+-.++|.+|+++.||+.+.+..+..+.+++.
T Consensus 578 ~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 567889999999999999999999999 332 2234556789999999999999888888888998884
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.63 E-value=0.0039 Score=52.99 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred eEEEEEeC---CCc--EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeec
Q 004329 153 IQTVIRIP---SGE--IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVG 227 (760)
Q Consensus 153 v~~v~~~~---~~~--l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 227 (760)
|+++++.+ +|. |++||.|..||+|+-...+..+..+ +.|.+++-...++|+.+..+|+|-+|+-.. .+...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-RlWRiKS 79 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRSQ-RLWRIKS 79 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCcc-eeeeecc
Confidence 45555543 433 8999999999999988777777654 567788887788899999999999998533 3333332
Q ss_pred CCCcEEEEEEeC---CC--eEEEEeCCCcEEE
Q 004329 228 HTAIVYSIDSHA---SG--LIVSGSEDRFAKI 254 (760)
Q Consensus 228 h~~~v~~v~~~p---~~--~l~s~s~Dg~I~i 254 (760)
...+.++.+.. +| .|++|-.+|.|-+
T Consensus 80 -K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 80 -KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22355555433 34 7888888887643
No 328
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.056 Score=59.07 Aligned_cols=182 Identities=10% Similarity=0.051 Sum_probs=100.3
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEee-c---CCcC-----eEEEEEeCCC
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWE-A---HNAP-----IQTVIRIPSG 162 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~-~---~~~~-----v~~v~~~~~~ 162 (760)
.|++|+.. |+++..+.-..+.+.++.|+ +..|+....||.+++||..... .+. + .... +....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 59999974 77777766445899999998 6679999999999999984222 221 1 1112 2222333344
Q ss_pred cEEEEECCCcEEEEe-CCCce--EEeec--------CCC-ceEE-EEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecC
Q 004329 163 EIVSGSSDTTIKLWK-GKKCA--QTFVG--------HTD-TVRG-LSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGH 228 (760)
Q Consensus 163 ~l~tgs~dg~i~iwd-~~~~~--~~~~~--------h~~-~V~~-l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h 228 (760)
++.-..++.+.+.+ ..+.. +.+.. |.. .... ..++.+.. .+....++.+.+.+-..- .. ...
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--~~-i~~ 215 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--KQ-IDS 215 (410)
T ss_pred -EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--cc-ccC
Confidence 33334455555554 22221 11100 000 0000 11222222 344444455553332111 00 122
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecC--CcEEEEEEccCCc
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GCVWDAKFLENGD 280 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~--~~v~~v~~~~~g~ 280 (760)
.+++..+++||++ ++|.-..+|.+.+.+ -.+....+... .....+.|+-+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 4689999999999 888888999998887 33444444433 4667777766543
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.61 E-value=0.018 Score=62.14 Aligned_cols=258 Identities=10% Similarity=0.099 Sum_probs=132.1
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
.|+.+.|.++.. |+.|...|.|-||.....+... .. ....-....+.+-. ..++.-.+-|+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~----~~~~~~~~~~~~~~-----------~~~~~~~l~di 64 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NR----EQPPDLDYNFRRFS-----------LNNSPGKLTDI 64 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------------S-------------GGGSS-SEEE-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---cc----CCCcccCccccccc-----------ccCCCcceEEe
Confidence 588999998865 9999999999999876433110 00 00001111111110 00111112222
Q ss_pred CC---------CceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEeecC----------CcCeEEEEEe
Q 004329 100 GS---------GEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWEAH----------NAPIQTVIRI 159 (760)
Q Consensus 100 ~~---------~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~----------~~~v~~v~~~ 159 (760)
.. ..+...+....++|++++.+ =++++.|..+|.+.+.|.+.+...+..+ ...++++.|.
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred hhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 11 12444556668999999997 6789999999999999998655544422 2346777765
Q ss_pred C-----CCc----EEEEECCCcEEEEeCC-----Cce----EEeecCCCceEEEEEe-C------------------C--
Q 004329 160 P-----SGE----IVSGSSDTTIKLWKGK-----KCA----QTFVGHTDTVRGLSVM-P------------------G-- 200 (760)
Q Consensus 160 ~-----~~~----l~tgs~dg~i~iwd~~-----~~~----~~~~~h~~~V~~l~~~-~------------------~-- 200 (760)
- |+. +++|...|.+.+|.+- ... .....+.++|..+... . +
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2 332 7799999999999632 111 1122466777666633 1 1
Q ss_pred -CeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEe-----CCC-eEEEEeCCCcEEEEe--CCceEEEEecC---
Q 004329 201 -VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSH-----ASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--- 267 (760)
Q Consensus 201 -~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~-----p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~--- 267 (760)
..++....+..+|++.. +.+...+..........+.+- ..+ .|++-..+|.|+++. .-+.+.....+
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 12666667888999985 444444444332333344442 234 888899999999999 33444444432
Q ss_pred --CcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 268 --GCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 268 --~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
..+...+++++|+++.-.+...+.+|.+-
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 23456677888886666666565555543
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0021 Score=71.49 Aligned_cols=175 Identities=14% Similarity=0.194 Sum_probs=108.9
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
+.++|++++.. .|+-|+.+|.|++.+.. +. . .....|+.. ...|. ++++|+.||.|.|-.+
T Consensus 40 D~is~~av~~~-~~~~GtH~g~v~~~~~~-~~-----~-~~~~~~s~~------~~~Ge-----y~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVHDK-FFALGTHRGAVYLTTCQ-GN-----P-KTNFDHSSS------ILEGE-----YVASCSDDGKVVIGSL 100 (846)
T ss_pred hHHHHHHhhcc-eeeeccccceEEEEecC-Cc-----c-ccccccccc------ccCCc-----eEEEecCCCcEEEeec
Confidence 44556665532 38889999999999876 33 1 233334333 23333 6999999999999888
Q ss_pred CCCceEEEEeCCCccEEEEEecCC-------eEEEEECCCeEEEEECC---c-eeEEeecCCcCeEEEEEeCCCcEEEEE
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLDNE-------DIVSSSVDSTLKRWRKG---K-LVEFWEAHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~~~-------~l~sgs~dg~v~vwd~~---~-~~~~~~~~~~~v~~v~~~~~~~l~tgs 168 (760)
-+.+...++. ...++.+++++++ ++++|+.-| +.++.-+ . ....+....++|.++.|. |.+++-.
T Consensus 101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 8777665554 4466777777633 488888888 6666422 1 112355567888888886 6666666
Q ss_pred CCCcEEEEeCCCceE--EeecCCCc------eEEEEEeCCCeEEEEeCCCeEEEEecC
Q 004329 169 SDTTIKLWKGKKCAQ--TFVGHTDT------VRGLSVMPGVGIISASHDCTIRLWALT 218 (760)
Q Consensus 169 ~dg~i~iwd~~~~~~--~~~~h~~~------V~~l~~~~~~~l~s~s~dg~I~iwd~~ 218 (760)
.|--|++||.....+ .+...... -..+.|.++..++.| ...+|++..++
T Consensus 177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 666788898543222 22222122 235667666656555 34457777654
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.60 E-value=0.0074 Score=65.97 Aligned_cols=168 Identities=11% Similarity=0.026 Sum_probs=86.4
Q ss_pred EeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 14 ELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
.+....-..+.+.++|+|+++..+.||.-.|+..... .... .+.-...+|.+.+. +++-...+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~-----r~k~-----~G~g~~~vw~~~n~------yAv~~~~~~ 90 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAW-----RNKA-----FGSGLSFVWSSRNR------YAVLESSST 90 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTT-----EEEE-----EEE-SEEEE-TSSE------EEEE-TTS-
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCC-----cccc-----cCceeEEEEecCcc------EEEEECCCe
Confidence 3444555678999999999666688899999984311 1111 23344678888554 777777889
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCcEEEEECCCcE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i 173 (760)
|.++.--+.+....++. ...+..|.. |..|... .++.|.+||.......-+..-.+|..+.|++++.+++-..+..+
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeE
Confidence 99964322332223332 123444433 4444444 45589999986444333333445899999999987666667788
Q ss_pred EEEeCCCc-------------eEEeecCCCceEEEEEeCC
Q 004329 174 KLWKGKKC-------------AQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 174 ~iwd~~~~-------------~~~~~~h~~~V~~l~~~~~ 200 (760)
.+++.... ......-...|.+.+|..+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 88863322 2223222566777777754
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.55 E-value=0.033 Score=62.61 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=144.8
Q ss_pred ccccCCCceEeEEeccCCC------CE--EEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCC--eEEE
Q 004329 2 MDIDFKEYQLSSELRGHED------DV--RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSF--VGPL 71 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~------~V--~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~--V~~l 71 (760)
+..|..+.+...++..... .+ ..+.+..++.++.++.||.|+-+|.++++. .......... -..+
T Consensus 74 ~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~-----~W~~~~~~~~~~~~~i 148 (488)
T cd00216 74 FALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ-----VWKFGNNDQVPPGYTM 148 (488)
T ss_pred EEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE-----eeeecCCCCcCcceEe
Confidence 3456666666666553322 01 111222226688889999999999998862 2221111110 0001
Q ss_pred EEeCCCCCCCCcEEEEEe---------CCCeEEEEECCCCceEEEEeCCCc--------------------cEE-EEEec
Q 004329 72 AWISPNEEFPEGGLVSGG---------MDTMVLVWDLGSGEKVQTLQGHKL--------------------QVT-GVTLD 121 (760)
Q Consensus 72 ~~~~~~~~~~~~~l~sgs---------~dg~I~vwd~~~~~~~~~l~~h~~--------------------~V~-~l~~~ 121 (760)
.-+|. ..++.++.++ .+|.+..+|..+|+.+..+..... .+. ...++
T Consensus 149 ~ssP~---v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d 225 (488)
T cd00216 149 TGAPT---IVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD 225 (488)
T ss_pred cCCCE---EECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe
Confidence 00110 0112355554 468899999999998887754211 111 12333
Q ss_pred --CCeEEEEECCC------------------eEEEEECC--ceeEEeecCCcCeE------EEEEe----CCCc----EE
Q 004329 122 --NEDIVSSSVDS------------------TLKRWRKG--KLVEFWEAHNAPIQ------TVIRI----PSGE----IV 165 (760)
Q Consensus 122 --~~~l~sgs~dg------------------~v~vwd~~--~~~~~~~~~~~~v~------~v~~~----~~~~----l~ 165 (760)
++.++.++.++ .+.-+|.. +....++......+ ...+. -++. ++
T Consensus 226 ~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 226 PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence 56788887665 57777664 44444321111111 00111 1232 66
Q ss_pred EEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEE------------------eCCCeEEEEec-CCceEEEee
Q 004329 166 SGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISA------------------SHDCTIRLWAL-TGQVLMEMV 226 (760)
Q Consensus 166 tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~------------------s~dg~I~iwd~-~~~~~~~~~ 226 (760)
.++.+|.+..+|..+....+..... ...+...| +.++.+ ..+|.+.-.|. +|+.+.+..
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred EECCCceEEEEECCCCcEeeEeEee-ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 7888999999996654443332111 11223333 222221 24577888885 566665554
Q ss_pred cCC--------CcE--EEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcEEE--EEEccCCcEEEEEcCC
Q 004329 227 GHT--------AIV--YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD--AKFLENGDIVTACSDG 288 (760)
Q Consensus 227 ~h~--------~~v--~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~--v~~~~~g~lvt~~~dg 288 (760)
... ... ..+.. .++.++.++.||.++.+| +++.+...+.++.+.+ +.+..+|+++.+..+|
T Consensus 384 ~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 384 EGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred CCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEec
Confidence 320 111 11222 234888889999999999 8888888776554433 3344566655555544
No 333
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.53 E-value=0.03 Score=61.30 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=110.4
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCe-EEEEECC---CeEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NED-IVSSSVD---STLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE- 163 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~-l~sgs~d---g~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~- 163 (760)
..|.+-|.+.... +.+.... ....-.|+ ++. ++..+.+ ..|.++|.. .....+....+......|+|||+
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 4566666654433 3233233 66677776 443 5544444 456777764 22333333455566778999987
Q ss_pred EE-EEECC--CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEe-CCC--eEEEEecCCceEEEeecCCCcEEEE
Q 004329 164 IV-SGSSD--TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISAS-HDC--TIRLWALTGQVLMEMVGHTAIVYSI 235 (760)
Q Consensus 164 l~-tgs~d--g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg--~I~iwd~~~~~~~~~~~h~~~v~~v 235 (760)
++ +.+.+ ..|.++|... ..+.+..+........|+||+. ++..+ ..+ .|.+.|+.+.....+...... ..
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~ 324 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NS 324 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--Cc
Confidence 43 44444 4577777433 3444554444344567999876 44443 334 577777766555444322211 24
Q ss_pred EEeCCC-eEEEEeCC---------CcEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEc-CC--cEEEEeCCC
Q 004329 236 DSHASG-LIVSGSED---------RFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACS-DG--VTRIWTVHS 297 (760)
Q Consensus 236 ~~~p~~-~l~s~s~D---------g~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~-dg--~I~vw~~~~ 297 (760)
.|+|+| .++..+.. ..|.+.| .+...+.+..........|+|||+ ++.... .+ .+.+.+++.
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 899999 55544432 2567777 333344454333444688999999 443333 23 344555544
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.43 E-value=0.016 Score=62.55 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=118.7
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEE-EEE---CC--
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLK-RWR---KG-- 140 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~-vwd---~~-- 140 (760)
.|+++.|.+... -+++|...|.|.+|.....+... +...-..+......+--...++.+. +-+ ..
T Consensus 3 ~v~~vs~a~~t~-----Elav~~~~GeVv~~k~~~n~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETL-----ELAVGLESGEVVLFKFGKNQNYG----NREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTT-----EEEEEETTS-EEEEEEEE----------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCc-----eEEEEccCCcEEEEEcccCCCCC----ccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence 478899998876 38999999999999875443221 0000000000000000000011111 111 00
Q ss_pred ---ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeec----------CCCceEEEEEeC-----CCe
Q 004329 141 ---KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVG----------HTDTVRGLSVMP-----GVG 202 (760)
Q Consensus 141 ---~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~----------h~~~V~~l~~~~-----~~~ 202 (760)
.+...+....++|++++.+.-|.++.|..+|.+.+.|.+.+.-.+.. ....|+++.|.- |++
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 23344555689999999988888999999999999999876655543 234578888864 332
Q ss_pred ----EEEEeCCCeEEEEecC----CceE----EEeecCCCcEEEEEEe-CC-----------------C----eEEEEeC
Q 004329 203 ----IISASHDCTIRLWALT----GQVL----MEMVGHTAIVYSIDSH-AS-----------------G----LIVSGSE 248 (760)
Q Consensus 203 ----l~s~s~dg~I~iwd~~----~~~~----~~~~~h~~~v~~v~~~-p~-----------------~----~l~s~s~ 248 (760)
+++|.+.|.+.+|.+. +... .....+.+.|..+..- .+ + .++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 8899999999999852 2211 1122456676666522 11 1 2344445
Q ss_pred CCcEEEEe--CCceEEEEe-cCCcEEEEEEc-----cCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 249 DRFAKIWK--DGVCVQSIE-HPGCVWDAKFL-----ENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 249 Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~-----~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
+..+|++. ..+..+... .+-....+++. ..+. +++-..+|.|++|.+..-+.+....
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 66799998 333333222 22233444453 2333 8888899999999998877665443
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0044 Score=68.98 Aligned_cols=259 Identities=13% Similarity=0.109 Sum_probs=149.7
Q ss_pred CCEEE-EEEcCCCe-EEEEE----CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 20 DDVRG-ICVCDNVG-IATSS----RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 20 ~~V~~-v~~~~~~~-l~tgs----~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
+.|.. ..|+|... ++.++ +.|+|.||-- +|+... .... .-.+.+++|+|..- .++.|-.-|.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr---~Vt~---P~hatSLCWHpe~~-----vLa~gwe~g~ 82 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQR---DVTY---PVHATSLCWHPEEF-----VLAQGWEMGV 82 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCCc---cccc---ceehhhhccChHHH-----HHhhccccce
Confidence 34444 36888777 55554 5688999853 354111 1111 22356799999875 5788888999
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEee--cCC----cCeEEEEEeCCCc
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWE--AHN----APIQTVIRIPSGE 163 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~--~~~----~~v~~v~~~~~~~ 163 (760)
+.+|...+.+.......|..++..+.|+ ++.++++..-|.+.+|... ..++... .|. -..+|...++++.
T Consensus 83 ~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred eEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChH
Confidence 9999998888777778899999999997 7779999999999999543 3222221 221 1244555566532
Q ss_pred -------EEEEECCCcEE-EEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeec-----
Q 004329 164 -------IVSGSSDTTIK-LWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVG----- 227 (760)
Q Consensus 164 -------l~tgs~dg~i~-iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~----- 227 (760)
.++.+.+.-+- .++.+ ...+.. .|.+ .|++. |+.++.+|+|+-.|-.|.+......
T Consensus 163 e~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQ 234 (1416)
T KOG3617|consen 163 EKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKSG-------VPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQ 234 (1416)
T ss_pred HhhhhhhhhccCchhhhcccccCccchhhccc-cccC-------CCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHH
Confidence 23333333332 33322 111111 1111 23444 8899999999999977766544332
Q ss_pred -----CCCcEEEEEE-eCCCeEE------------------EEeCCCcEEEEe-CCc----eEEEEecCCcEEEEEEccC
Q 004329 228 -----HTAIVYSIDS-HASGLIV------------------SGSEDRFAKIWK-DGV----CVQSIEHPGCVWDAKFLEN 278 (760)
Q Consensus 228 -----h~~~v~~v~~-~p~~~l~------------------s~s~Dg~I~iwd-~~~----~~~~~~~~~~v~~v~~~~~ 278 (760)
....|.++.- ..+.++. .|+..|.|-+=. .|- ....+.....++|++++..
T Consensus 235 mLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~ 314 (1416)
T KOG3617|consen 235 MLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEK 314 (1416)
T ss_pred HHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEecc
Confidence 1122222211 1111000 112222222222 111 1111124458999999987
Q ss_pred Cc-EEEEEcCCcEEEEeCCCC
Q 004329 279 GD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+. +..|...|.+.+|--...
T Consensus 315 ~~~l~agt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 315 EIRLWAGTKEGNVTIWLDVNK 335 (1416)
T ss_pred ceEEEecccCCcEEEeeecCc
Confidence 77 788888999999975544
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.36 E-value=0.096 Score=53.43 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=52.3
Q ss_pred ccccCCCceEeEEeccCCCCEE--EEEEcCCCe-EEEE-----ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE
Q 004329 2 MDIDFKEYQLSSELRGHEDDVR--GICVCDNVG-IATS-----SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~--~v~~~~~~~-l~tg-----s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~ 73 (760)
+++|..+.+..+.+....+.-. --+|++||+ |+|. +..|.|-|||.. .. +.....+..|.-.-..+.+
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~---~~ri~E~~s~GIGPHel~l 106 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RG---YRRIGEFPSHGIGPHELLL 106 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CC---cEEEeEecCCCcChhhEEE
Confidence 5678888888877765444432 357999999 6654 335899999997 22 4566677777777778889
Q ss_pred eCCCC
Q 004329 74 ISPNE 78 (760)
Q Consensus 74 ~~~~~ 78 (760)
.|++.
T Consensus 107 ~pDG~ 111 (305)
T PF07433_consen 107 MPDGE 111 (305)
T ss_pred cCCCC
Confidence 99986
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.039 Score=60.94 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=85.1
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
|...|.--++...+. ++.|+.-|.+.+|+-..+... .....+..+.+..+..+++.. +++.|+..|.|.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----~~~~~~~~~~~~~~~vs~~e~-----lvAagt~~g~V~v 102 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----KLKNEGATGITCVRSVSSVEY-----LVAAGTASGRVSV 102 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh----cccccCccceEEEEEecchhH-----hhhhhcCCceEEe
Confidence 445555556665556 999999999999998755421 112222333444445555554 5889999999999
Q ss_pred EECCCCce---EEE--E-eCCCccEEEEEec--CCeEEEEECCCeEEEEECCc------eeEEeecCCcCeEEEEEe
Q 004329 97 WDLGSGEK---VQT--L-QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK------LVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 97 wd~~~~~~---~~~--l-~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~------~~~~~~~~~~~v~~v~~~ 159 (760)
+-+..+.+ ... . +.|...|+|++|+ +..+++|...|.|..-.+.. ..+.+-...+.|..+.+.
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 98876422 111 1 2478999999998 45599999999998875543 222222334555555544
No 338
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.019 Score=61.34 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=138.9
Q ss_pred CccccCCCceEeEEecc--CCCCEEE-EEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQLSSELRG--HEDDVRG-ICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~g--H~~~V~~-v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.+||+.++.+.+.+.. ....+.. ..||.|++.+..-.-.+|.||+..+-. ....-.-....|....|+|.+
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-----lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-----LLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-----eecccccCCccccCcccCCCc
Confidence 46899999999999886 3444444 479999995444445789999865311 211111235678888899987
Q ss_pred CCCCCcEEEEEeC-----CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEE----------ECCCeEEEEECC
Q 004329 78 EEFPEGGLVSGGM-----DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSS----------SVDSTLKRWRKG 140 (760)
Q Consensus 78 ~~~~~~~l~sgs~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sg----------s~dg~v~vwd~~ 140 (760)
. +|+--.. -..+.+-.+.+++.+++-.-|.-.=+.+.|. +++|..- +.-..+.|+.++
T Consensus 359 ~-----llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 359 N-----LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred c-----eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 6 3332221 1345666666666666655454444455553 4443321 111123333332
Q ss_pred c-eeE-EeecCCcCeEEEEEeCCCc-EE--EEE-CCCcEEEEeCCCceE----EeecCCCceEEEEEeCCCe-EEEE---
Q 004329 141 K-LVE-FWEAHNAPIQTVIRIPSGE-IV--SGS-SDTTIKLWKGKKCAQ----TFVGHTDTVRGLSVMPGVG-IISA--- 206 (760)
Q Consensus 141 ~-~~~-~~~~~~~~v~~v~~~~~~~-l~--tgs-~dg~i~iwd~~~~~~----~~~~h~~~V~~l~~~~~~~-l~s~--- 206 (760)
+ .+. ..-.-...|...+|-|.|. ++ +|- ...++.+|....... ...-.....+.+.|+|.|+ ++.+
T Consensus 434 eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 434 EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec
Confidence 1 111 1112356788899999876 43 332 245788886542111 1111235577899999776 3333
Q ss_pred eCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCC
Q 004329 207 SHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 207 s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
|..|.+..+|.+- .....-.......+.+.|.|.| ++++++.-.
T Consensus 514 s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 4578999999764 3332222333456788999999 888887643
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.22 E-value=0.2 Score=50.31 Aligned_cols=192 Identities=15% Similarity=0.062 Sum_probs=112.7
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC-CccEEEEEec-CCeEEEEE-CCCeEE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH-KLQVTGVTLD-NEDIVSSS-VDSTLK 135 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~~-~~~l~sgs-~dg~v~ 135 (760)
+.+.+-...+..++|.|+... ++++....+.|..++. +|+.++.+.-. .+..-.|++- ++.++..+ .++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~t----LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGT----LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTE----EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCe----EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 445555667999999998764 4777788899999997 47887776533 3567788886 56666666 488888
Q ss_pred EEECC---c-----eeEEee-----cCCcCeEEEEEeCCC-cEEEEECCCcEEEEeCCC-----ceEEe--------ecC
Q 004329 136 RWRKG---K-----LVEFWE-----AHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGKK-----CAQTF--------VGH 188 (760)
Q Consensus 136 vwd~~---~-----~~~~~~-----~~~~~v~~v~~~~~~-~l~tgs~dg~i~iwd~~~-----~~~~~--------~~h 188 (760)
+++.. . ....+. .++..+-.++|.+.+ +++.+-......+|.... ..... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 88652 1 111121 245568899999974 477777777666765321 11111 113
Q ss_pred CCceEEEEEeCC-Ce-EEEEeCCCeEEEEecCCceEEEeecCC---------CcEEEEEEeCCCeEEEEeCCCcEEEE
Q 004329 189 TDTVRGLSVMPG-VG-IISASHDCTIRLWALTGQVLMEMVGHT---------AIVYSIDSHASGLIVSGSEDRFAKIW 255 (760)
Q Consensus 189 ~~~V~~l~~~~~-~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~---------~~v~~v~~~p~~~l~s~s~Dg~I~iw 255 (760)
...+.+++++|. +. ++....+..|..+|.+|+.+..+.-.. ...-.|++.++|.|...++-+..+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 345788999993 34 777888899999999998877665222 35778999998866666777666554
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.38 Score=52.64 Aligned_cols=236 Identities=15% Similarity=0.130 Sum_probs=118.5
Q ss_pred eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE-------eCCCc
Q 004329 41 TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-------QGHKL 113 (760)
Q Consensus 41 ~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-------~~h~~ 113 (760)
.|+||+.. |. ....+.-..+.+.++.|..+.. |++...||.+++||+. |+....+ .-...
T Consensus 62 ~I~iys~s-G~-----ll~~i~w~~~~iv~~~wt~~e~------LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~ 128 (410)
T PF04841_consen 62 SIQIYSSS-GK-----LLSSIPWDSGRIVGMGWTDDEE------LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLEC 128 (410)
T ss_pred EEEEECCC-CC-----EeEEEEECCCCEEEEEECCCCe------EEEEEcCCEEEEEeCC-CceeechhhhccccCcccc
Confidence 59999876 54 2222222228899999988765 8888999999999986 4331111 11122
Q ss_pred cEEEEEecCCeEEEEECCCeEEEEE-CCceeE--Eee---c-----CCc-CeEE-EEEeCCCc-EEEEECCCcEEEEeCC
Q 004329 114 QVTGVTLDNEDIVSSSVDSTLKRWR-KGKLVE--FWE---A-----HNA-PIQT-VIRIPSGE-IVSGSSDTTIKLWKGK 179 (760)
Q Consensus 114 ~V~~l~~~~~~l~sgs~dg~v~vwd-~~~~~~--~~~---~-----~~~-~v~~-v~~~~~~~-l~tgs~dg~i~iwd~~ 179 (760)
.+....+.++-++.-..++.+.+.+ ..+... .+. . +.. ..+. ..+..+.. .+....++.+.+.+..
T Consensus 129 ~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 129 RIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred cccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcc
Confidence 2222333322244445566665553 222211 110 0 100 1111 12222332 3444555666644433
Q ss_pred CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEEEeecC-CCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 180 KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLMEMVGH-TAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 180 ~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~~h-~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
.. ..+ ...+++..++++|+++ ++.-..+|.+.+.+.+-. ...++... ......+.|+.+ |..+..|.
T Consensus 209 ~~-~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~--------dav~l~~~ 278 (410)
T PF04841_consen 209 SF-KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN--------DAVVLSWE 278 (410)
T ss_pred cc-ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC--------CcEEEEeC
Confidence 22 111 2346899999999877 666777899988875432 33333322 234445555544 44444452
Q ss_pred CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 257 DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
..+..+...+. .+.|.-++. ++..-.|| +||+.-+.-+.+..+
T Consensus 279 --~~l~lvg~~~~--~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V 322 (410)
T PF04841_consen 279 --DELLLVGPDGD--SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV 322 (410)
T ss_pred --CEEEEECCCCC--ceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence 22222222211 123333444 33333455 788877666655433
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.01 Score=66.17 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=59.5
Q ss_pred EEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 22 VRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 22 V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
++++||+|... |+.|-.-|.+.+|...+.+ .......|..+|..+.|++++. .++++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv~~th~a~i~~l~wS~~G~-----~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTVVETHPAPIQGLDWSHDGT-----VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-----eeeeccCCCCCceeEEecCCCC-----eEEEcCCCceeEEEEee
Confidence 46789999988 8999999999999987544 3445567999999999999998 79999999999999876
Q ss_pred C
Q 004329 101 S 101 (760)
Q Consensus 101 ~ 101 (760)
.
T Consensus 132 ~ 132 (1416)
T KOG3617|consen 132 V 132 (1416)
T ss_pred e
Confidence 3
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.21 E-value=0.14 Score=52.92 Aligned_cols=253 Identities=13% Similarity=0.038 Sum_probs=132.9
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE----------eCCCeEEEEECCCCceEEEEe
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG----------GMDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg----------s~dg~I~vwd~~~~~~~~~l~ 109 (760)
+.+.++|.++++ ..-.+. .+..-.+..+|+++. ++++ -..-.|.+||..+-.+...+.
T Consensus 17 ~rv~viD~d~~k-----~lGmi~--~g~~~~~~~spdgk~-----~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 17 SRVYVIDADSGK-----LLGMID--TGFLGNVALSPDGKT-----IYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEEEETTTTE-----EEEEEE--EESSEEEEE-TTSSE-----EEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCc-----EEEEee--cccCCceeECCCCCE-----EEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 478888877554 222222 233344667888873 3432 234469999999998877654
Q ss_pred CCCc-cEEEEEecCCeEEEEECCCeEEEEE-----------CCceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEe
Q 004329 110 GHKL-QVTGVTLDNEDIVSSSVDSTLKRWR-----------KGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWK 177 (760)
Q Consensus 110 ~h~~-~V~~l~~~~~~l~sgs~dg~v~vwd-----------~~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd 177 (760)
-... ...++. ..+.+.....++.+.+|+ +......-......++.+--..+..+.+-|.||.+.-..
T Consensus 85 iP~k~R~~~~~-~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 85 IPPKPRAQVVP-YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp ETTS-B--BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cCCcchheecc-cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEE
Confidence 2221 111111 122233333444455554 431111111122223333333344588999999988876
Q ss_pred CC---CceE----EeecCCCceE-EEEEeC-CCeEEEEeCCCeEEEEecCCceEEEeec---C------C----CcEEEE
Q 004329 178 GK---KCAQ----TFVGHTDTVR-GLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVG---H------T----AIVYSI 235 (760)
Q Consensus 178 ~~---~~~~----~~~~h~~~V~-~l~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~---h------~----~~v~~v 235 (760)
+. +..+ .|....+++. .-.+.. ++.++-.+.+|.|+--|+.+........ - . +.-.-+
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 33 2222 1222223322 223333 4567778999999999987654332210 0 0 111224
Q ss_pred EEeCCC-eEEEE---eC-----CCc--EEEEe--CCceEEEEecCCcEEEEEEccCCc--EEEEE-cCCcEEEEeCCCCe
Q 004329 236 DSHASG-LIVSG---SE-----DRF--AKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTAC-SDGVTRIWTVHSDK 299 (760)
Q Consensus 236 ~~~p~~-~l~s~---s~-----Dg~--I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~-~dg~I~vw~~~~~~ 299 (760)
++++.. .|+.- +. |+. |.++| +++.+..+..+.++.++..+.+.+ |++.+ .++.+.+||..+|+
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 555433 22221 11 222 45556 788888888778899999999887 44444 47999999999999
Q ss_pred eechhh
Q 004329 300 VADSLE 305 (760)
Q Consensus 300 ~~~~~~ 305 (760)
.+.+++
T Consensus 324 ~~~~~~ 329 (342)
T PF06433_consen 324 LVRSIE 329 (342)
T ss_dssp EEEEE-
T ss_pred EEeehh
Confidence 887654
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.20 E-value=0.1 Score=54.00 Aligned_cols=257 Identities=14% Similarity=0.077 Sum_probs=135.8
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEeeC-C----C
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILLG-H----T 65 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~-h----~ 65 (760)
+++|..+.++...+.+- -.-.+..+|+++ +++++ +.-.|.+||..+-.. .-...+.. | .
T Consensus 20 ~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~---~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 20 YVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP---TGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE---EEEEEETTS-B--BS
T ss_pred EEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc---cceEecCCcchheec
Confidence 56677777777776632 222356789988 66543 455799999886531 11111211 1 1
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC---Cce
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK---GKL 142 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~---~~~ 142 (760)
...+..+++.+++.. ++.-.+--..|.|.|+..++.+..+... ++..-.-..++.|.+-|.||.+.-..+ ++.
T Consensus 95 ~~~~~~~ls~dgk~~---~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFL---YVQNFTPATSVTVVDLAAKKVVGEIDTP-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEE---EEEEESSSEEEEEEETTTTEEEEEEEGT-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEE---EEEccCCCCeEEEEECCCCceeeeecCC-CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 122334666776632 3334455667888888888877776522 222222223667999999999887744 333
Q ss_pred eEE----eecCCcCeE-EEEEeC-CCcEEEEECCCcEEEEeCCCceE----EeecC----------CCceEEEEEeC-CC
Q 004329 143 VEF----WEAHNAPIQ-TVIRIP-SGEIVSGSSDTTIKLWKGKKCAQ----TFVGH----------TDTVRGLSVMP-GV 201 (760)
Q Consensus 143 ~~~----~~~~~~~v~-~v~~~~-~~~l~tgs~dg~i~iwd~~~~~~----~~~~h----------~~~V~~l~~~~-~~ 201 (760)
... +.....++. .-.+.. .+.++--+.+|.|+-.|...... .+.-- .+.-.-+++++ .+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 322 112222222 222333 34566678888888877443221 11110 11223355555 33
Q ss_pred eEEEEeC--------CCe--EEEEec-CCceEEEeecCCCcEEEEEEeCCC--eEEEE-eCCCcEEEEe--CCceEEEEe
Q 004329 202 GIISASH--------DCT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSG-SEDRFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 202 ~l~s~s~--------dg~--I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~-s~Dg~I~iwd--~~~~~~~~~ 265 (760)
+++..-. |+. |-++|+ +++.+.++.. ...+.+|.++.+. +|++. ..++.+.+|| +++.++.+.
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3332211 222 555565 4556666542 3457799999887 66554 5689999999 888888887
Q ss_pred cCC
Q 004329 266 HPG 268 (760)
Q Consensus 266 ~~~ 268 (760)
.-+
T Consensus 330 ~lG 332 (342)
T PF06433_consen 330 QLG 332 (342)
T ss_dssp --S
T ss_pred ccC
Confidence 433
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0013 Score=43.79 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=33.9
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEe
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWS 46 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd 46 (760)
.+....+.+|...|.+++|.+++. +++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778889999999999998777 99999999999996
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.08 E-value=0.1 Score=52.28 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=111.5
Q ss_pred EEeCCCccEEEEEec--CCe-EEEEECCCeEEEEECC-ceeEEeecC-CcCeEEEEEeCCCcEEEEE-CCCcEEEEeCC-
Q 004329 107 TLQGHKLQVTGVTLD--NED-IVSSSVDSTLKRWRKG-KLVEFWEAH-NAPIQTVIRIPSGEIVSGS-SDTTIKLWKGK- 179 (760)
Q Consensus 107 ~l~~h~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~-~~~~~~~~~-~~~v~~v~~~~~~~l~tgs-~dg~i~iwd~~- 179 (760)
.+.+-...+..++|+ .+. +++....+.|..++.. +.++.+.-. .+..-.+++..++.++..+ .++.+.+++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 455666679999997 344 5556667777777764 555555433 3567889999888877666 47888888742
Q ss_pred --Cc--e---EEee-----cCCCceEEEEEeCC-CeEEEEeCCCeEEEEecCC----ceEEEee--------cCCCcEEE
Q 004329 180 --KC--A---QTFV-----GHTDTVRGLSVMPG-VGIISASHDCTIRLWALTG----QVLMEMV--------GHTAIVYS 234 (760)
Q Consensus 180 --~~--~---~~~~-----~h~~~V~~l~~~~~-~~l~s~s~dg~I~iwd~~~----~~~~~~~--------~h~~~v~~ 234 (760)
+. . +.+. .+...+..++|.+. +.|+.+-...-..+|.+.+ ..+.... .+...+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 11 1 1121 24456899999994 5577777776667776543 1211111 23456789
Q ss_pred EEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEecCC----------cEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 235 IDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEHPG----------CVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 235 v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~~~~----------~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
+.++|.. +++...+++.|..+| .|+.+..+.... ..-.|+|.++|.+...+.-+..++|
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999976 777888899999999 788777776222 5788999999998888887766665
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.00055 Score=76.19 Aligned_cols=211 Identities=19% Similarity=0.230 Sum_probs=134.7
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCe-EEEEECC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NED-IVSSSVD 131 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~-l~sgs~d 131 (760)
+.....+..|....+|++|+.... +++.|+..|.|+++++.+|.......+|...|+-+..+ +.. +.+.++.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~-----hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN-----HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred cccchhhhccccceeeEEeecCCc-----eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 345567778899999999998877 69999999999999999999999999999999999876 444 4444444
Q ss_pred C-eEEEEECCc---eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE--E-eec---CCCceEEEEEeCC
Q 004329 132 S-TLKRWRKGK---LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ--T-FVG---HTDTVRGLSVMPG 200 (760)
Q Consensus 132 g-~v~vwd~~~---~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~--~-~~~---h~~~V~~l~~~~~ 200 (760)
. ...+|+.+. ..+.+. .-.++.|+..-. -+.|+......+||..++.. + +.+ ..-.-+...|+|.
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred CchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 4 467898763 333332 334677776544 34555557788999765433 2 111 1122256778886
Q ss_pred CeEEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEc
Q 004329 201 VGIISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFL 276 (760)
Q Consensus 201 ~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~ 276 (760)
..++- +|| .+||.+. +.++.+...+..+ .=.|+|+| .++.-++ ||| +...++.+..- .-..+.|+
T Consensus 1242 D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L-dqc~VtFN 1310 (1516)
T KOG1832|consen 1242 DTLIL--NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL-DQCAVTFN 1310 (1516)
T ss_pred cceEe--eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccc-cceEEEec
Confidence 66442 455 4688643 3344443333211 22588998 6666553 788 33344333211 22456777
Q ss_pred cCCcEEEEE
Q 004329 277 ENGDIVTAC 285 (760)
Q Consensus 277 ~~g~lvt~~ 285 (760)
..|.+..+.
T Consensus 1311 stG~VmYa~ 1319 (1516)
T KOG1832|consen 1311 STGDVMYAM 1319 (1516)
T ss_pred cCccchhhh
Confidence 777754443
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.42 Score=49.21 Aligned_cols=213 Identities=12% Similarity=0.156 Sum_probs=118.6
Q ss_pred EEEEEeCCCeEEEEECCC-CceEEEEeCCCccEEEEEecCCe-EEEEECCCeEEEEECCceeEEe---------------
Q 004329 84 GLVSGGMDTMVLVWDLGS-GEKVQTLQGHKLQVTGVTLDNED-IVSSSVDSTLKRWRKGKLVEFW--------------- 146 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~~~~~-l~sgs~dg~v~vwd~~~~~~~~--------------- 146 (760)
.++.|+.+| +++++... .......+ ...|..+..-... ++..-.|+.+.++++.......
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~ 85 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT 85 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccc
Confidence 589999998 89999832 33333332 2338888776322 3333346999999864221111
Q ss_pred -ecCCcCeEEEE--EeCCC-cEEEEECCCcEEEEeCCC-------ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEE
Q 004329 147 -EAHNAPIQTVI--RIPSG-EIVSGSSDTTIKLWKGKK-------CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLW 215 (760)
Q Consensus 147 -~~~~~~v~~v~--~~~~~-~l~tgs~dg~i~iwd~~~-------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iw 215 (760)
......+...+ -...+ ..++....+.|.+|.... ..+.+ .-.+.+.+++|. ++.++.|..++ ..+.
T Consensus 86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~-~~~i~v~~~~~-f~~i 162 (275)
T PF00780_consen 86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL-GNKICVGTSKG-FYLI 162 (275)
T ss_pred cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe-CCEEEEEeCCc-eEEE
Confidence 11223344444 11222 355555666888886322 22222 245788999998 45566666444 7777
Q ss_pred ecCCceEEEeecC-------------CCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEE--EEecCCcEEEEEEccCC
Q 004329 216 ALTGQVLMEMVGH-------------TAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ--SIEHPGCVWDAKFLENG 279 (760)
Q Consensus 216 d~~~~~~~~~~~h-------------~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~--~~~~~~~v~~v~~~~~g 279 (760)
|++......+... ..++..+....+.+|++ . |..-.+.| .|...+ .+..+..+.++++..
T Consensus 163 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~-- 238 (275)
T PF00780_consen 163 DLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSS-- 238 (275)
T ss_pred ecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE-e-cceEEEEcCCCCcCcccEEEcCCchhEEEEEC--
Confidence 8763333333211 12233333333324443 2 33333334 554443 556666777777743
Q ss_pred cEEEEEcCCcEEEEeCCCCeeechhhh
Q 004329 280 DIVTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 280 ~lvt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
.++.+-.++.|.||++.+++++..+..
T Consensus 239 pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 239 PYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 366666667799999999998876653
No 348
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.99 E-value=0.74 Score=49.85 Aligned_cols=264 Identities=12% Similarity=0.069 Sum_probs=145.7
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC--Cc-------
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS--GE------- 103 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~--~~------- 103 (760)
+++||..|.+|||+...+..... ....-..-..+|..+..-.-.... +...++.-.-..+.+|.+.. |.
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~-~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGS-EDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCC-CcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 99999999999999864432211 222223346788888754311100 11234446667788887721 11
Q ss_pred eEEEEeCCCc-----cEEEEEec----CCeEEEEECCCeEEEEECCceeEEee-cCCcCeEEEEEeCCC-cEEEEECCCc
Q 004329 104 KVQTLQGHKL-----QVTGVTLD----NEDIVSSSVDSTLKRWRKGKLVEFWE-AHNAPIQTVIRIPSG-EIVSGSSDTT 172 (760)
Q Consensus 104 ~~~~l~~h~~-----~V~~l~~~----~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~~~v~~v~~~~~~-~l~tgs~dg~ 172 (760)
.+..+..|.- ..++-.|. .+.+..-+-||.+.+++.+....... ...--...+.+.+.. .+++++.+..
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee
Confidence 1122222322 22222332 24488899999999999876553322 222222345666654 4889999988
Q ss_pred EEEEeCCC-------c------------eEEee-----cCCCceEEEEEeC---CCeEEEEeCCCeEEEEecCCceEEEe
Q 004329 173 IKLWKGKK-------C------------AQTFV-----GHTDTVRGLSVMP---GVGIISASHDCTIRLWALTGQVLMEM 225 (760)
Q Consensus 173 i~iwd~~~-------~------------~~~~~-----~h~~~V~~l~~~~---~~~l~s~s~dg~I~iwd~~~~~~~~~ 225 (760)
+..|.... . .+.+. .-...+..+.... ....+..=...++.+.+.+|.....
T Consensus 198 l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~- 276 (418)
T PF14727_consen 198 LECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQ- 276 (418)
T ss_pred EEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEE-
Confidence 98885211 0 00000 0112233333322 1112222234556666666643332
Q ss_pred ecCCCcEEEEE-------EeCCC--eEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEEcc----CCcEEEEEcCCcEEE
Q 004329 226 VGHTAIVYSID-------SHASG--LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLE----NGDIVTACSDGVTRI 292 (760)
Q Consensus 226 ~~h~~~v~~v~-------~~p~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~----~g~lvt~~~dg~I~v 292 (760)
+.......|++ ..++. .++.++.++++.||...+.+..-+.+....++.... +|-+++-+.+|.+.+
T Consensus 277 krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 277 KRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred EecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEE
Confidence 22232222222 12222 599999999999999888888877665444555543 455888999999998
Q ss_pred EeCCCCe
Q 004329 293 WTVHSDK 299 (760)
Q Consensus 293 w~~~~~~ 299 (760)
-=+-+.-
T Consensus 357 ~YLGTdP 363 (418)
T PF14727_consen 357 SYLGTDP 363 (418)
T ss_pred EEeCCCC
Confidence 7766543
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.081 Score=58.58 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeE-eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKI-LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
-.+.+..++.+++.. +|.|+..|.|.++.+..+..+....... -..|...|+|++|++++. .+++|...|.|.
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-----k~ysGD~~Gkv~ 149 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-----KLYSGDSQGKVV 149 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-----EEeecCCCceEE
Confidence 344455566777777 8889999999999887644322222222 234789999999999998 599999999999
Q ss_pred EEECCCC----ceEEEEeCCCccEEEEEecCCeEEEEECCCeE
Q 004329 96 VWDLGSG----EKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTL 134 (760)
Q Consensus 96 vwd~~~~----~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v 134 (760)
.-.+.+. ...+.+....+.|..+.+...+++.++.-..+
T Consensus 150 ~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~ 192 (726)
T KOG3621|consen 150 LTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI 192 (726)
T ss_pred EEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhh
Confidence 9988772 12233344567788888776665554444333
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.23 Score=51.57 Aligned_cols=210 Identities=13% Similarity=0.137 Sum_probs=121.9
Q ss_pred EEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEeec--
Q 004329 72 AWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWEA-- 148 (760)
Q Consensus 72 ~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~-- 148 (760)
.|.++... ++.+--..+.|+-|+..+++. ..+............+ ++.|+++.....+.--+.+..+..+..
T Consensus 31 ~w~~~~~~----L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGA----LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCE----EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEecccc
Confidence 34455442 466667788899999876643 2233222222333444 344444443332322244433222211
Q ss_pred ---CCcCeEEEEEeCCCcEEEEECC------------CcEEEEe-CCCceEEeecCCCceEEEEEeCCCe-EEEE-eCCC
Q 004329 149 ---HNAPIQTVIRIPSGEIVSGSSD------------TTIKLWK-GKKCAQTFVGHTDTVRGLSVMPGVG-IISA-SHDC 210 (760)
Q Consensus 149 ---~~~~v~~v~~~~~~~l~tgs~d------------g~i~iwd-~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~-s~dg 210 (760)
...........|+|.+..+... |.++.+| .....+.+..+-..-++|+|+|+++ ++.+ +..+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1234557788889987765544 3455556 3445555556666778999999886 4444 4458
Q ss_pred eEEEEecC---C----ce-EEEeecCCCcEEEEEEeCCCeEE-EEeCCC-cEEEEe-CCceEEEEecC-CcEEEEEEcc-
Q 004329 211 TIRLWALT---G----QV-LMEMVGHTAIVYSIDSHASGLIV-SGSEDR-FAKIWK-DGVCVQSIEHP-GCVWDAKFLE- 277 (760)
Q Consensus 211 ~I~iwd~~---~----~~-~~~~~~h~~~v~~v~~~p~~~l~-s~s~Dg-~I~iwd-~~~~~~~~~~~-~~v~~v~~~~- 277 (760)
.|.-|++. + .. ...+..+.+..-.++...+|.+. ++..+| .|.+|+ .++.+..+..+ ..+++++|--
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCC
Confidence 88888764 1 11 12222344566677778888444 444443 899999 88999999987 6888999854
Q ss_pred CCc--EEEEEc
Q 004329 278 NGD--IVTACS 286 (760)
Q Consensus 278 ~g~--lvt~~~ 286 (760)
+.+ ++++..
T Consensus 266 ~~~~L~iTs~~ 276 (307)
T COG3386 266 DLNTLYITSAR 276 (307)
T ss_pred CcCEEEEEecC
Confidence 444 444443
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.92 E-value=0.51 Score=49.90 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=119.4
Q ss_pred CeEEEEECCCCceEEEEeC-CCccEEEEE---ecC------CeEEEEEC----------CCeEEEEECCc------eeEE
Q 004329 92 TMVLVWDLGSGEKVQTLQG-HKLQVTGVT---LDN------EDIVSSSV----------DSTLKRWRKGK------LVEF 145 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~-h~~~V~~l~---~~~------~~l~sgs~----------dg~v~vwd~~~------~~~~ 145 (760)
+.|++.|..+.+.+..+.- ....+++++ +.+ .+++.|+. .|.+.+++..+ .+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688888888877766542 233444443 332 23666653 28899997765 2222
Q ss_pred e--ecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCc--eEE--eecCCCceEEEEEeCCCeEEEEeCCCeEEEEe--c
Q 004329 146 W--EAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC--AQT--FVGHTDTVRGLSVMPGVGIISASHDCTIRLWA--L 217 (760)
Q Consensus 146 ~--~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~--~~~--~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd--~ 217 (760)
. ....++|.+++.. ++++++ +.++.|.+|+.... ... +......+.++... ++.++.|.....+.++. .
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc-ccEEEEEEcccCEEEEEEEc
Confidence 2 2447889999877 555444 44588999984322 222 22233467777776 55788898888888774 4
Q ss_pred CCceEEEee--cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-C--------Cc-eEEE---EecCCcEEEE---EEccC
Q 004329 218 TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--------GV-CVQS---IEHPGCVWDA---KFLEN 278 (760)
Q Consensus 218 ~~~~~~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~--------~~-~~~~---~~~~~~v~~v---~~~~~ 278 (760)
.+..+..+. .....++++.+.+++ .++.+..+|.+.++. . +. .+.. +.....|+++ ++.|.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~ 238 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR 238 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence 444344433 345678899998666 999999999999997 1 22 3332 3355688888 54451
Q ss_pred --C-------cEEEEEcCCcEEEEe
Q 004329 279 --G-------DIVTACSDGVTRIWT 294 (760)
Q Consensus 279 --g-------~lvt~~~dg~I~vw~ 294 (760)
+ .++.++.+|.|-+.-
T Consensus 239 ~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 239 SGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred CCCCcccccceEEEEecCCEEEEEE
Confidence 1 188888999998443
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.91 E-value=0.25 Score=55.36 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred CCCcEEEEECCCcEEEEeCCC----c--eEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCce----------
Q 004329 160 PSGEIVSGSSDTTIKLWKGKK----C--AQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQV---------- 221 (760)
Q Consensus 160 ~~~~l~tgs~dg~i~iwd~~~----~--~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~---------- 221 (760)
++|+.... .++.|.+.|..+ . ...+..-......+.++||++ ++++..+.++.|.|+....
T Consensus 286 kdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 286 KAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred hCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 35653332 367899999665 2 233334556778999999888 5566679999999974321
Q ss_pred ---EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC------------CceEEEEe-c--CCcEE---EEEEccCC
Q 004329 222 ---LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD------------GVCVQSIE-H--PGCVW---DAKFLENG 279 (760)
Q Consensus 222 ---~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~------------~~~~~~~~-~--~~~v~---~v~~~~~g 279 (760)
..+..- ...-...+|.++| ...+---|..|..|+. ...+..+. | ++.+. .=.-.|+|
T Consensus 365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dg 443 (635)
T PRK02888 365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADG 443 (635)
T ss_pred ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCC
Confidence 222221 2233456788888 7778888999999992 13444443 1 11111 11225677
Q ss_pred c-EEEEEc---CC----------cEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCcee--eccCCC
Q 004329 280 D-IVTACS---DG----------VTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL--QIPGTN 343 (760)
Q Consensus 280 ~-lvt~~~---dg----------~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l--~~~g~~ 343 (760)
+ +++... |. .-.+.|+...++.-......+.+.-....+.+......++|++.....- .....+
T Consensus 444 k~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~EPHd~~~v~~~~i~~~~~~~~~~~~~~~a~~~~~~ 523 (635)
T PRK02888 444 KWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAEPHDAIIVHRSKINPKQVWDRDDPFFADAVKQAKA 523 (635)
T ss_pred CEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCCCceeeeEEHHHcCCcceecCCCCCchhhhhhhhh
Confidence 7 444332 32 2245555555543333333333333334445555667889988763221 111233
Q ss_pred cc-----eEEEEeeCCceEEEEEec
Q 004329 344 AG-----QTKVVREGDNGVAYSWDM 363 (760)
Q Consensus 344 ~g-----~~~~v~~~~~~~~~~w~~ 363 (760)
+| ...+++.|+...+|+...
T Consensus 524 ~~~~l~~~~~v~R~G~kv~Vym~a~ 548 (635)
T PRK02888 524 DGVDLEEDSKVIRDGNKVRVYMTSQ 548 (635)
T ss_pred cCcccccccceEEeCCEEEEEEEEE
Confidence 33 667899998888888774
No 353
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.90 E-value=0.64 Score=47.61 Aligned_cols=212 Identities=11% Similarity=0.171 Sum_probs=122.9
Q ss_pred EEEEEeCCCCCCCCcEEEEEeCCCe-EEEEECCCCceEEEEeCCCccEE--EEEec--CCeEEEE-----ECCCeEEEEE
Q 004329 69 GPLAWISPNEEFPEGGLVSGGMDTM-VLVWDLGSGEKVQTLQGHKLQVT--GVTLD--NEDIVSS-----SVDSTLKRWR 138 (760)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~sgs~dg~-I~vwd~~~~~~~~~l~~h~~~V~--~l~~~--~~~l~sg-----s~dg~v~vwd 138 (760)
..++.+|.... .++.+-.-|+ ..+||..+++....+....+.-. .-.|+ +++|++. +..|.|-|||
T Consensus 8 H~~a~~p~~~~----avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPE----AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCe----EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 35667775543 4666666665 77899999988877764433321 12344 5556654 3457788998
Q ss_pred CC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEE
Q 004329 139 KG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRL 214 (760)
Q Consensus 139 ~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~i 214 (760)
.. ..+..+..|.-.-..+.+.|+|. |+++ ..|.-.-=|.++. ++=..+.+..+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGGI~Thpd~GR~--------------------kLNl~tM~psL~~ 142 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-NGGIETHPDSGRA--------------------KLNLDTMQPSLVY 142 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-cCCCccCcccCce--------------------ecChhhcCCceEE
Confidence 76 33445556655666778888885 4333 2221100000000 0111222333334
Q ss_pred Ee-cCCceEEE--e--ecCCCcEEEEEEeCCCeEEEEe-CCC-------cEEEEeCCceEEEEe--------cCCcEEEE
Q 004329 215 WA-LTGQVLME--M--VGHTAIVYSIDSHASGLIVSGS-EDR-------FAKIWKDGVCVQSIE--------HPGCVWDA 273 (760)
Q Consensus 215 wd-~~~~~~~~--~--~~h~~~v~~v~~~p~~~l~s~s-~Dg-------~I~iwd~~~~~~~~~--------~~~~v~~v 273 (760)
.| .+|+.+.+ + .-|...|.-+++.++|.++.+. ..| .|-+++.+..++.+. ..+.+-+|
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEE
Confidence 43 34554444 2 2366778888888888444443 222 255566555444443 34688999
Q ss_pred EEccCCcEEEEEc--CCcEEEEeCCCCeeechhh
Q 004329 274 KFLENGDIVTACS--DGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 274 ~~~~~g~lvt~~~--dg~I~vw~~~~~~~~~~~~ 305 (760)
+++++|.++..++ -|.+.+||..+++++....
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 9999998444333 8899999999999876554
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.82 E-value=0.00039 Score=75.04 Aligned_cols=189 Identities=14% Similarity=0.254 Sum_probs=124.0
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce--EEEEeCCCccEEEEEec--CCe-EEEEE----CCCeEE
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK--VQTLQGHKLQVTGVTLD--NED-IVSSS----VDSTLK 135 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~~--~~~-l~sgs----~dg~v~ 135 (760)
...+.|+++.-+.+. .+++.|..+|.|.+-......- .....+|...+++++|+ +.. ++.|- .|..+.
T Consensus 56 tqy~kcva~~y~~d~---cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDR---CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCch---hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 456778877666552 3688999999999988764422 23456788899999997 323 55542 456699
Q ss_pred EEECCcee------EEeec-CCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC-ceEEeecCCCceEEEEEeC-CCeEEE
Q 004329 136 RWRKGKLV------EFWEA-HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK-CAQTFVGHTDTVRGLSVMP-GVGIIS 205 (760)
Q Consensus 136 vwd~~~~~------~~~~~-~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~-~~~~~~~h~~~V~~l~~~~-~~~l~s 205 (760)
+||....+ ..+.+ ......+++|..+.+ +++|...+.++++|.+. +.+...-.+..+..+.+.| ....++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 99975331 11222 334455788886666 66888888999999874 3333333455678888888 555666
Q ss_pred EeCCCeEEEEec--CC-ceEEEeec----CCCcEEEEEEeCCC--eEEEEeC-CCcEEEEe
Q 004329 206 ASHDCTIRLWAL--TG-QVLMEMVG----HTAIVYSIDSHASG--LIVSGSE-DRFAKIWK 256 (760)
Q Consensus 206 ~s~dg~I~iwd~--~~-~~~~~~~~----h~~~v~~v~~~p~~--~l~s~s~-Dg~I~iwd 256 (760)
...||.|.+||. +- .+++.+.. ....+..++|+|.. .+++.+. .++|+.+|
T Consensus 213 s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 213 SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 677999999993 11 12222211 12358899999975 6666654 46788887
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.73 E-value=0.08 Score=61.28 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=90.6
Q ss_pred CccccCCCceEeEEeccCCCC-EEEEEEcC------CCeEEEEECCCeEEEEeCCCCCCc-cceeeeEeeCCCCCeEEEE
Q 004329 1 MMDIDFKEYQLSSELRGHEDD-VRGICVCD------NVGIATSSRDRTVRFWSLDPSDKR-KYHSSKILLGHTSFVGPLA 72 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~-V~~v~~~~------~~~l~tgs~Dg~i~iWd~~~~~~~-~~~~~~~~~~h~~~V~~l~ 72 (760)
|+.+|+..++++.+...|... |..++-.. +..-+.|-.++.+..||.+-.... .....+. ........|++
T Consensus 506 ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~-Y~~~~~Fs~~a 584 (794)
T PF08553_consen 506 LYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ-YSSKNNFSCFA 584 (794)
T ss_pred eEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc-cccCCCceEEE
Confidence 467899999999999988765 66665321 123678888899999998743210 0001111 12345567777
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEE
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWR 138 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd 138 (760)
-..+| +|++|+.+|.|++||--..+....+.+-..+|.+|+.+ ++..+.++.+..+.+++
T Consensus 585 Tt~~G------~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 585 TTEDG------YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ecCCc------eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 66655 59999999999999954333344466778999999997 66766667777777775
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.71 E-value=1.1 Score=50.74 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=60.7
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 109 (760)
++.++.++.++.|.-.|..+++. .+............+.+......+..+.++.++.++.|+.+...|.++|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~-lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE-LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce-eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 56788888889999999988762 12111100000001101101111111112358888999999999999999987765
Q ss_pred C--CC--ccEEE-EEecCCeEEEEEC------CCeEEEEECC
Q 004329 110 G--HK--LQVTG-VTLDNEDIVSSSV------DSTLKRWRKG 140 (760)
Q Consensus 110 ~--h~--~~V~~-l~~~~~~l~sgs~------dg~v~vwd~~ 140 (760)
. +. ..+++ -...++.++.++. +|.|..+|..
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~ 189 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAK 189 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECC
Confidence 2 11 11221 1223566666653 6788877754
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.69 Score=48.13 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=117.7
Q ss_pred EEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc
Q 004329 26 CVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE 103 (760)
Q Consensus 26 ~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~ 103 (760)
.|.++.. +.+--..+.|.-|+..++.. ..+. +.+.+.++.....+. .|+++.. -+.+++.+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~------~~~~-~p~~~~~~~~~d~~g-----~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK------RVFP-SPGGFSSGALIDAGG-----RLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce------EEEE-CCCCcccceeecCCC-----eEEEEcc--ccEEEeccCCc
Confidence 3556555 66666788899998875541 2222 333344554444443 2444433 34556666555
Q ss_pred eEEEEeC----C-CccEEEEEec-CCeEEEEECC------------CeEEEEEC-CceeEEeecCCcCeEEEEEeCCCc-
Q 004329 104 KVQTLQG----H-KLQVTGVTLD-NEDIVSSSVD------------STLKRWRK-GKLVEFWEAHNAPIQTVIRIPSGE- 163 (760)
Q Consensus 104 ~~~~l~~----h-~~~V~~l~~~-~~~l~sgs~d------------g~v~vwd~-~~~~~~~~~~~~~v~~v~~~~~~~- 163 (760)
.+..+.. . .........+ ++.+..++.. |.++.++. +........+-..-+.++|+|+++
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE
Confidence 5333221 1 1223334443 4445555444 33555563 455555556566667899999997
Q ss_pred EE-EEECCCcEEEEeCCC-------c--eEEeecCCCceEEEEEeCCCeEEEEeCC-C-eEEEEecCCceEEEeecCCCc
Q 004329 164 IV-SGSSDTTIKLWKGKK-------C--AQTFVGHTDTVRGLSVMPGVGIISASHD-C-TIRLWALTGQVLMEMVGHTAI 231 (760)
Q Consensus 164 l~-tgs~dg~i~iwd~~~-------~--~~~~~~h~~~V~~l~~~~~~~l~s~s~d-g-~I~iwd~~~~~~~~~~~h~~~ 231 (760)
++ +=+..+.|.-|+... . ...+..+.+..-.++...++.+.++... | .|.+|+.+|+.+..+.-....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~ 256 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR 256 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC
Confidence 43 444557787776431 1 1122234466677788778886644444 3 899999999999998887788
Q ss_pred EEEEEEeCC
Q 004329 232 VYSIDSHAS 240 (760)
Q Consensus 232 v~~v~~~p~ 240 (760)
+++++|-..
T Consensus 257 ~t~~~FgG~ 265 (307)
T COG3386 257 PTNPAFGGP 265 (307)
T ss_pred CccceEeCC
Confidence 888888653
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.54 E-value=1.2 Score=45.86 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=121.7
Q ss_pred CeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE---
Q 004329 31 VGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT--- 107 (760)
Q Consensus 31 ~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~--- 107 (760)
..|+.|+.+| +.+++...... ..... +...|..+...++-+ ++..-.|+.++++++..-.....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~----~~~i~--~~~~I~ql~vl~~~~------~llvLsd~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSK----PTRIL--KLSSITQLSVLPELN------LLLVLSDGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CEEEEEECCC-EEEEEecCCcc----ceeEe--ecceEEEEEEecccC------EEEEEcCCccEEEEchhhcccccccc
Confidence 3499999998 88998832221 11111 233399999998877 33333469999999875543331
Q ss_pred -----------EeCCCccEEEEE----ecCCeEEEEECCCeEEEEECCc-------eeEEeecCCcCeEEEEEeCCCcEE
Q 004329 108 -----------LQGHKLQVTGVT----LDNEDIVSSSVDSTLKRWRKGK-------LVEFWEAHNAPIQTVIRIPSGEIV 165 (760)
Q Consensus 108 -----------l~~h~~~V~~l~----~~~~~l~sgs~dg~v~vwd~~~-------~~~~~~~~~~~v~~v~~~~~~~l~ 165 (760)
.......+..++ ..+...+.......+.+|.... ....+ .-...+.++.|. ++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~-~~~i~ 152 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL-GNKIC 152 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe-CCEEE
Confidence 112233455555 1244455566666888875432 22222 234677888888 34466
Q ss_pred EEECCCcEEEEeCCC-ceEEeec-------------CCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEE-EeecCCC
Q 004329 166 SGSSDTTIKLWKGKK-CAQTFVG-------------HTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLM-EMVGHTA 230 (760)
Q Consensus 166 tgs~dg~i~iwd~~~-~~~~~~~-------------h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~ 230 (760)
.|..++ ..+.|..+ ....+.. ...++..+... ++.++.+. |..-.+.|..|+..+ ....-..
T Consensus 153 v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~-~~~g~fv~~~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY-DNIGVFVNKNGEPSRKSTIQWSS 229 (275)
T ss_pred EEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe-cceEEEEcCCCCcCcccEEEcCC
Confidence 665444 66677552 2222211 11233333433 34444443 445555667776554 2222234
Q ss_pred cEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCC
Q 004329 231 IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG 268 (760)
Q Consensus 231 ~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~ 268 (760)
...++++... ++++.+. +.|.||+ ++++++.+..++
T Consensus 230 ~p~~~~~~~p-yli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 230 APQSVAYSSP-YLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred chhEEEEECC-EEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 5556666544 5666555 4599999 888998887554
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.051 Score=58.08 Aligned_cols=133 Identities=19% Similarity=0.240 Sum_probs=99.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---------CCeEEEEECCCeEEEEECC---c-eeEEeecC-
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---------NEDIVSSSVDSTLKRWRKG---K-LVEFWEAH- 149 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---------~~~l~sgs~dg~v~vwd~~---~-~~~~~~~~- 149 (760)
++.++.....++-.|++.|+.+...+-|.. |.-+.+. ...-+.|-.|..|.-||.+ . .+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 456677777899999999999999887766 4444442 2235677788889999875 2 22223333
Q ss_pred ---CcCeEEEEEeCCCcEEEEECCCcEEEEeC--CCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec
Q 004329 150 ---NAPIQTVIRIPSGEIVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL 217 (760)
Q Consensus 150 ---~~~v~~v~~~~~~~l~tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~ 217 (760)
.....|.+-..+|.+++||.+|.||+||. ......+.+-..+|..+..+.++..+.|..+..+.+-+.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 34567888888899999999999999983 233345667888999999999999888888888888874
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.44 E-value=0.0087 Score=39.52 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=21.2
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+...+..|...|.++.+.+.+ .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344444556666666666655 666666666666664
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.22 E-value=0.39 Score=50.84 Aligned_cols=124 Identities=13% Similarity=0.182 Sum_probs=83.1
Q ss_pred CcEEEEeCCC------ceEEe--ecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCce-EEEeec--CCCcEEEEEEeC
Q 004329 171 TTIKLWKGKK------CAQTF--VGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQV-LMEMVG--HTAIVYSIDSHA 239 (760)
Q Consensus 171 g~i~iwd~~~------~~~~~--~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~--h~~~v~~v~~~p 239 (760)
|.|.+++..+ ..+.. ....++|++++.. +++++ ++..+.|.+|++.... +..... ....+.++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv-~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLV-VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEE-EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEE-EeecCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 8899998655 22222 3467899999988 55544 4445889999985544 443332 344777777765
Q ss_pred CCeEEEEeCCCcEEEE--e-CCceEEEEe---cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 240 SGLIVSGSEDRFAKIW--K-DGVCVQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 240 ~~~l~s~s~Dg~I~iw--d-~~~~~~~~~---~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
+ +++.|.....+.++ + ....+..+. .+..++++.|.++++ ++++..+|.+.++...+
T Consensus 140 ~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 140 N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 5 88888888888877 4 344344443 455889999987766 88999999999999864
No 362
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.13 E-value=2 Score=44.43 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=131.3
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC--CCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH--TSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
-...+.+|.|..+.. ++.|. .+.| +....+. ..+.....-... .-...+|.|.... .+++ +..+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG-~tW~~~~~~~~~~~~~~l~~I~f~~~~------g~iv-G~~g~- 82 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGG-KTWQPVSLDLDNPFDYHLNSISFDGNE------GWIV-GEPGL- 82 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTT-SS-EE-----S-----EEEEEEEETTE------EEEE-EETTE-
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCC-ccccccccCCCccceeeEEEEEecCCc------eEEE-cCCce-
Confidence 456899999997767 66665 4543 4433332 233332211111 2346677775432 2444 44454
Q ss_pred EEEECCCCceEEEEe---CCCccEEEE-EecCCeEEEEECCCeEEEE-ECCceeE-EeecCCcCeEEEEEeCCCcEEEEE
Q 004329 95 LVWDLGSGEKVQTLQ---GHKLQVTGV-TLDNEDIVSSSVDSTLKRW-RKGKLVE-FWEAHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~---~h~~~V~~l-~~~~~~l~sgs~dg~v~vw-d~~~~~~-~~~~~~~~v~~v~~~~~~~l~tgs 168 (760)
.+...+.|+.-..+. .-......+ ...++.....+..|.|..= |-++.-. ........+..+..+++|++++.+
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs 162 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS 162 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence 334444454433332 112233333 3345565555666665543 3333222 233445778888889999987777
Q ss_pred CCCcEE-EEeCCCc-eE-EeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec--CCceEEE----eecCCCcEEEEEEeC
Q 004329 169 SDTTIK-LWKGKKC-AQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL--TGQVLME----MVGHTAIVYSIDSHA 239 (760)
Q Consensus 169 ~dg~i~-iwd~~~~-~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~--~~~~~~~----~~~h~~~v~~v~~~p 239 (760)
..|.+. -||.... -+ .-.....+|.++.|.|++.+......|.|+.=+. ..+.-.. .....-.+..+++.+
T Consensus 163 ~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 163 SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence 777664 6775542 22 3334568899999999988877889999999882 2222111 111223489999999
Q ss_pred CCeEEEEeCCCcEEEEe-CCceEEEEe----cCCcEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 240 SGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 240 ~~~l~s~s~Dg~I~iwd-~~~~~~~~~----~~~~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
++.+.+++..|.+..=. .++.-+... .+.....+.|.++.+-.+.+.+|.|.-|
T Consensus 243 ~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 243 PNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 88555566666555543 555555443 3567899999887776667788888655
No 363
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.11 E-value=2.7 Score=45.55 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=94.1
Q ss_pred eEEEEEeCCCcEEEEECCCcEE-EEeCCCc--eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCc-----eEEE
Q 004329 153 IQTVIRIPSGEIVSGSSDTTIK-LWKGKKC--AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQ-----VLME 224 (760)
Q Consensus 153 v~~v~~~~~~~l~tgs~dg~i~-iwd~~~~--~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~-----~~~~ 224 (760)
...+...+++.++..+..|.+. -||.+.. ...-......+.++.+.+++.++..+.+|.+..-+-.+. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceee
Confidence 4445667788776666666544 3554443 222233456688999998888888888888766555543 2222
Q ss_pred eec--CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEe----cCCcEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 225 MVG--HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 225 ~~~--h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~----~~~~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
... ....++++.+.+++.++.++.+|.+.... .++.-+... -+.....+.|.++++..+.+.+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 221 12358899999888778888899888876 444433332 3457889999888888888889988655
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.85 E-value=2.5 Score=45.29 Aligned_cols=259 Identities=11% Similarity=0.066 Sum_probs=128.9
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeC-------C---------C
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG-------H---------T 65 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-------h---------~ 65 (760)
+++|+.+.+....... ...+....|+|+|+.+.--.++.|.+++..++... ..+..+ - -
T Consensus 26 ~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~----~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 26 YIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET----QLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE----ESES--TTTEEESB--HHHHHHTS
T ss_pred EEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeE----EeccccceeEEcCccceecccccc
Confidence 4677777555443333 67888999999999444455789999988655311 111111 0 1
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEE-eCCCeEEEEECCCCceEEEEeCCCc---cEEEEEecCCeEEEEECCCe--EEEEEC
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSG-GMDTMVLVWDLGSGEKVQTLQGHKL---QVTGVTLDNEDIVSSSVDST--LKRWRK 139 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sg-s~dg~I~vwd~~~~~~~~~l~~h~~---~V~~l~~~~~~l~sgs~dg~--v~vwd~ 139 (760)
+.-..+-|+|+++. |+.. -.+..|..+.+.. ...... .+..+.+- ..|..+-. +.+++.
T Consensus 101 ~~~~~~~WSpd~~~-----la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~ 165 (353)
T PF00930_consen 101 DRRSAVWWSPDSKY-----LAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDL 165 (353)
T ss_dssp SSSBSEEE-TTSSE-----EEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE------BTTS---EEEEEEEES
T ss_pred ccccceEECCCCCE-----EEEEEECCcCCceEEeec------cCCccccCCcccccccC----CCCCcCCceEEEEEEC
Confidence 12356889999984 4443 3444444433210 001111 22233221 01111222 333454
Q ss_pred Ccee----EEe---ecCCcCeEEEEEeCCCc-EEE--EECCC---cEEEEeCC--CceEEeec-CCCc---eEEEEEe-C
Q 004329 140 GKLV----EFW---EAHNAPIQTVIRIPSGE-IVS--GSSDT---TIKLWKGK--KCAQTFVG-HTDT---VRGLSVM-P 199 (760)
Q Consensus 140 ~~~~----~~~---~~~~~~v~~v~~~~~~~-l~t--gs~dg---~i~iwd~~--~~~~~~~~-h~~~---V~~l~~~-~ 199 (760)
.... ... .....-+..+.|.+++. ++. ...+. .+.++|.. .+...... .... -....+. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 3111 111 12345678889999887 543 33333 24445532 22222221 2222 2345554 4
Q ss_pred C-Ce-EEEEeCCCeEEE--EecCCceEEEeecCCCcEEE-EEEeCCC--eEEEEeCC--CcEEEEe---C-CceEEEEec
Q 004329 200 G-VG-IISASHDCTIRL--WALTGQVLMEMVGHTAIVYS-IDSHASG--LIVSGSED--RFAKIWK---D-GVCVQSIEH 266 (760)
Q Consensus 200 ~-~~-l~s~s~dg~I~i--wd~~~~~~~~~~~h~~~v~~-v~~~p~~--~l~s~s~D--g~I~iwd---~-~~~~~~~~~ 266 (760)
+ .. +.....||.-++ ++..+.....+....-.|.. +.+++++ ..+++..+ +.-.+|. . +.....+..
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 3 33 555557776554 45677777766666667755 5677776 45555543 3455665 5 567777775
Q ss_pred CCcE-EEEEEccCCc
Q 004329 267 PGCV-WDAKFLENGD 280 (760)
Q Consensus 267 ~~~v-~~v~~~~~g~ 280 (760)
.... ..+.|+|+|+
T Consensus 326 ~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 326 EDGDHYSASFSPDGK 340 (353)
T ss_dssp TSSTTEEEEE-TTSS
T ss_pred CCCCceEEEECCCCC
Confidence 5544 5999999999
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.73 E-value=1.6 Score=47.17 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred EEEEcCCCe-EEEEECCCeEEE---EeCCCCC--CccceeeeEe-eCCC--CCeEEEEEeCCCCCC------CCcEEEEE
Q 004329 24 GICVCDNVG-IATSSRDRTVRF---WSLDPSD--KRKYHSSKIL-LGHT--SFVGPLAWISPNEEF------PEGGLVSG 88 (760)
Q Consensus 24 ~v~~~~~~~-l~tgs~Dg~i~i---Wd~~~~~--~~~~~~~~~~-~~h~--~~V~~l~~~~~~~~~------~~~~l~sg 88 (760)
.++.+|++. |+.+..+..+.+ |+..... ...+.....- ..+. ..|+++.|.|-...- ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 356678888 666666665554 5432111 1112111111 1122 578888877652111 12479999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEec
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD 121 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~ 121 (760)
..+|.|++|.. +|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999996 677766666688999988773
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.68 E-value=2.2 Score=41.29 Aligned_cols=193 Identities=12% Similarity=0.162 Sum_probs=108.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEeCCCccEEEEEe--cC--CeEEEEECCC-eEEEEEC----CceeEEee-----c
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQ-TLQGHKLQVTGVTL--DN--EDIVSSSVDS-TLKRWRK----GKLVEFWE-----A 148 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~V~~l~~--~~--~~l~sgs~dg-~v~vwd~----~~~~~~~~-----~ 148 (760)
++..--..|.|+-||..+.+..+ ++.+.. +.++.+ .+ ..++++.... .|--||. ....+++. .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 45555667778889987755432 233332 222222 22 1222222222 2333442 12222211 1
Q ss_pred CCcCeEEEEEeCCCcEEEEEC----------CCcEEEEeCCCceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEe
Q 004329 149 HNAPIQTVIRIPSGEIVSGSS----------DTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWA 216 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~l~tgs~----------dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd 216 (760)
.......-..+|+|++..|.- .|.++.|-....+..+...-+--+.++|+.+.+ .++-+.+-.|.-||
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 133455666788998765542 245666655544444444445556788887665 56778888898898
Q ss_pred c--C-C-----ceEEEeec----CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC-cEEEEEEccC
Q 004329 217 L--T-G-----QVLMEMVG----HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG-CVWDAKFLEN 278 (760)
Q Consensus 217 ~--~-~-----~~~~~~~~----h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~-~v~~v~~~~~ 278 (760)
. . | +.+..+.. .....-.+++..+| +.+++-..++|...| +++.++.+..+. .|++++|--.
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3 1 2 23333332 11122344555566 667777788888888 899999998665 8999999654
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.2 Score=58.14 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=69.2
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
++.|+..|.+-..|.. +.. .....-....++|++++|+.++. .++.|-.+|.|.+||...++..+.+..|.
T Consensus 102 ivi~Ts~ghvl~~d~~-~nL---~~~~~ne~v~~~Vtsvafn~dg~-----~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMT-GNL---GPLHQNERVQGPVTSVAFNQDGS-----LLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred EEEEcCchhhhhhhhh-ccc---chhhcCCccCCcceeeEecCCCc-----eeccccCCCcEEEEEccCCcceeeeeecC
Confidence 8888888888888876 321 11222233478999999999998 68899999999999999999999888777
Q ss_pred ccEEEEEe----cCC-eEEEEECCCe
Q 004329 113 LQVTGVTL----DNE-DIVSSSVDST 133 (760)
Q Consensus 113 ~~V~~l~~----~~~-~l~sgs~dg~ 133 (760)
.+++++-+ +++ .++++...|.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc
Confidence 77666544 333 3777777776
No 368
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.014 Score=65.65 Aligned_cols=122 Identities=14% Similarity=0.231 Sum_probs=92.1
Q ss_pred CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC--eEEEEeCCC-cEEE
Q 004329 180 KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDR-FAKI 254 (760)
Q Consensus 180 ~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg-~I~i 254 (760)
+..+.|..|...-++++|+-+.. ++.|+..|.|++++. +|.......+|.+.|+-+.-+-+| .|.+++... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45567778889999999998554 999999999999996 677778888999999999999898 444444444 5778
Q ss_pred EeCCc---eEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 255 WKDGV---CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 255 wd~~~---~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
|+.+. ..+++. .-.++.|+..-+ -+.|+.-....+||+.++..+.++
T Consensus 1172 W~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred hccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 99433 333333 445678877655 466666678899999999877653
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.074 Score=58.15 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred CCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEE-EEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE
Q 004329 189 TDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVY-SIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS 263 (760)
Q Consensus 189 ~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~-~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~ 263 (760)
...+.-+.|+|... +|.+..+|.|.+..++-+.+.++.-|...++ +++|.||| .++.|-.||+|++.| .+..++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34577788998655 8899999999999988888888887777777 99999999 999999999999999 5666655
Q ss_pred --EecCCcEEEEEEc
Q 004329 264 --IEHPGCVWDAKFL 276 (760)
Q Consensus 264 --~~~~~~v~~v~~~ 276 (760)
+.....|.++.|.
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 3344567777775
No 370
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.36 E-value=3.3 Score=41.61 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=78.4
Q ss_pred CceEeEEecc-CCCCEEEEEEcCCCe-EEEEECCC--eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 8 EYQLSSELRG-HEDDVRGICVCDNVG-IATSSRDR--TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 8 ~~~l~~~l~g-H~~~V~~v~~~~~~~-l~tgs~Dg--~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+|+++.++.. .+.-...+.|.+++. +-+.+.-| .|+.+|+.+++. .....+ ...-+--.++...+.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~---~~~~~l-~~~~FgEGit~~~d~------ 101 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV---LQSVPL-PPRYFGEGITILGDK------ 101 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE---EEEEE--TTT--EEEEEEETTE------
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE---EEEEEC-CccccceeEEEECCE------
Confidence 4677777653 234456788877777 66666666 899999998762 111112 223334445544332
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG 140 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~ 140 (760)
+....-.++...+||..+.+.+.++. ..+.=+.++.++..++.......++++|..
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TT
T ss_pred EEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCc
Confidence 34555678999999999999888886 346778888888889999889999999875
No 371
>PRK13684 Ycf48-like protein; Provisional
Probab=95.30 E-value=4.8 Score=42.70 Aligned_cols=266 Identities=14% Similarity=0.103 Sum_probs=143.1
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeE-eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKI-LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
-...+.+|+|.++.. ++.|. +|. ||....+. ..|..... +......+.++.|.+. . .++ ++..|.|.
T Consensus 44 ~~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG-~tW~~~~~~~~~~~~~l~~v~~~~~-~-----~~~-~G~~g~i~ 112 (334)
T PRK13684 44 TEANLLDIAFTDPNHGWLVGS-NRT--LLETNDGG-ETWEERSLDLPEENFRLISISFKGD-E-----GWI-VGQPSLLL 112 (334)
T ss_pred CCCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCC-CCceECccCCcccccceeeeEEcCC-c-----EEE-eCCCceEE
Confidence 356899999987666 66554 554 34433222 12332211 1112334677877543 2 233 34555543
Q ss_pred EEECCCCceEEEEe---CCC-ccEEEEEecCCeEEEEECCCeEEEE-ECCceeEEee-cCCcCeEEEEEeCCCcEEEEEC
Q 004329 96 VWDLGSGEKVQTLQ---GHK-LQVTGVTLDNEDIVSSSVDSTLKRW-RKGKLVEFWE-AHNAPIQTVIRIPSGEIVSGSS 169 (760)
Q Consensus 96 vwd~~~~~~~~~l~---~h~-~~V~~l~~~~~~l~sgs~dg~v~vw-d~~~~~~~~~-~~~~~v~~v~~~~~~~l~tgs~ 169 (760)
.- -+.|+.-..+. ... .........++.+..++..|.|..= |-++.-..+. .....+.++.+.+++.++..+.
T Consensus 113 ~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~ 191 (334)
T PRK13684 113 HT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS 191 (334)
T ss_pred EE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC
Confidence 32 22233222221 011 1122223344444445555554433 3333322222 2245678899999888777777
Q ss_pred CCcEEEE-eCC-C-ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeec----CCCcEEEEEEeCCC
Q 004329 170 DTTIKLW-KGK-K-CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVG----HTAIVYSIDSHASG 241 (760)
Q Consensus 170 dg~i~iw-d~~-~-~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~----h~~~v~~v~~~p~~ 241 (760)
.|.+..- +.. + -......-...++++.+.+++.++..+..|.+++=+. .|..-..... ....++++.+.+++
T Consensus 192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 7766542 322 2 1112223446788999999888777778888765322 2322221111 12357888999888
Q ss_pred eEEEEeCCCcEEEEe-CCceEEEEe----cCCcEEEEEEccCCcEEEEEcCCcEEEEeC
Q 004329 242 LIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd-~~~~~~~~~----~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~ 295 (760)
.++.++.+|.+..=. .+..-+... .+.....+.|..++..+..+..|.|.-|+-
T Consensus 272 ~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 272 EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 666677788665433 344333332 233688888888888888888999887763
No 372
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.27 E-value=2.5 Score=47.65 Aligned_cols=91 Identities=13% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCCeEEEEecCC-----ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeCCc--------------eEEEEec
Q 004329 208 HDCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWKDGV--------------CVQSIEH 266 (760)
Q Consensus 208 ~dg~I~iwd~~~-----~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~~~--------------~~~~~~~ 266 (760)
.++.|.+.|... ..+..+..-......+.++||| .++++..+.+|.|.|..+ ....+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 467899999654 4555555667778899999999 566667799999999222 2333334
Q ss_pred CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 267 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 267 ~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
.-.....+|.++|. +.+.--|..|..|++...
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence 33556788989988 666667999999998763
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=0.02 Score=54.88 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=72.2
Q ss_pred EEEEECCCcEEEEeCCCceEEee---cCCCceEEEEEeCCCeEEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEE-E
Q 004329 164 IVSGSSDTTIKLWKGKKCAQTFV---GHTDTVRGLSVMPGVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSID-S 237 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~~~~~~~---~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~-~ 237 (760)
+..-+.||.++-++.++...... -|... ..+. --+..+++|+.+|.|.+|... +........-...|.++. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~-~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVV-TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeec-ccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 45667788888877554222111 12111 1111 114559999999999999865 322222222233333333 2
Q ss_pred eCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeee
Q 004329 238 HASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 238 ~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~ 301 (760)
-.++ +.++++.||.||.|+ ..+.+.... |.. .|...+++.++|+.|.+|++..++.+
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-------~~~e~~ivv~sd~~i~~a~~S~d~~~ 171 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-------ESGEELIVVGSDEFLKIADTSHDRVL 171 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-------CCcceeEEecCCceEEeeccccchhh
Confidence 2333 888999999999998 444444433 332 23333666667777777766665543
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.072 Score=58.21 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-cCCcEE-EEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVW-DAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~-~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
...+..+.|+|.- ++|.+..+|.|.+.. ....+.++. +...++ +++|.|||+ ++.|-.||+|++-|..++..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4567889999988 999999999999998 777778888 444676 999999999 78888999999999999988776
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.28 Score=52.77 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=87.6
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe--------EEEEECCCeEEEEeCCCCCCccceeeeEeeCC----CCCe
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG--------IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH----TSFV 68 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--------l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h----~~~V 68 (760)
++.+|+..++++.+.+-|.+ |.-+.+.|+.+ -+.|-.|+.|.-||.+-.... .+...++| ....
T Consensus 358 l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 358 LYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQSKQYSTKNNF 433 (644)
T ss_pred ceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeeecccccccccc
Confidence 46778999999999998877 77788887754 345667889999998733211 11222222 2334
Q ss_pred EEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEEC
Q 004329 69 GPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~ 139 (760)
.|.+-..+ |++++||.+|.|++||--..+-...+++-..+|..+..+ ++..+.|+.+..+.+.++
T Consensus 434 sc~aTT~s------G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 434 SCFATTES------GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ceeeecCC------ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 45554444 469999999999999973223344577888889888876 666666777777766643
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=0.034 Score=53.34 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred EEEEECCCeEEEEECCceeEEeec---CCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCce---EEeecCCCceEEEEE-
Q 004329 125 IVSSSVDSTLKRWRKGKLVEFWEA---HNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCA---QTFVGHTDTVRGLSV- 197 (760)
Q Consensus 125 l~sgs~dg~v~vwd~~~~~~~~~~---~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~---~~~~~h~~~V~~l~~- 197 (760)
+...+.||.|+-++.++.....+. +... . ...--+..+++|+.+|.|.+|.....- ..+..-...|.++..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~-~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-Q-RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-e-eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 566678888888776532222211 1111 1 111113448999999999999865211 111111222222222
Q ss_pred eCC-CeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 198 MPG-VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 198 ~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
..+ ....+++.||.||.|++.......+.+|... -|...+++.+.|+.|.+|+
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------~~~e~~ivv~sd~~i~~a~ 164 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------ESGEELIVVGSDEFLKIAD 164 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC------CCcceeEEecCCceEEeec
Confidence 222 2478899999999999765444444333221 1222555555566555553
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.92 E-value=10 Score=44.45 Aligned_cols=282 Identities=16% Similarity=0.158 Sum_probs=154.2
Q ss_pred EEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCc-cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe--
Q 004329 13 SELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKR-KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG-- 89 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs-- 89 (760)
..+-|-.+-..|+.+.++|.+..||+-|.=.+-.+.+.... .+.....-...-++|..++......+. .+.+++++
T Consensus 300 ve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~-q~qivtCsGa 378 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQG-QGQIVTCSGA 378 (1096)
T ss_pred EEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccC-CceEEEEeCC
Confidence 33445566677888889999999999887777777643321 111111112245688888887665322 23466654
Q ss_pred -CCCeEEEEECCCC-ceEE--EEeCCCccEEEEE--ec---CCeEEEEECCCeEEEEECCceeEEee--cCCcCeEEEEE
Q 004329 90 -MDTMVLVWDLGSG-EKVQ--TLQGHKLQVTGVT--LD---NEDIVSSSVDSTLKRWRKGKLVEFWE--AHNAPIQTVIR 158 (760)
Q Consensus 90 -~dg~I~vwd~~~~-~~~~--~l~~h~~~V~~l~--~~---~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~v~~v~~ 158 (760)
.||++++....=+ .... .+.| -..++.+. ++ +++++.+-.+-+ ++...+....... +-......+..
T Consensus 379 ~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~ 456 (1096)
T KOG1897|consen 379 FKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFC 456 (1096)
T ss_pred CCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccce-EEEEEccceEEeccccccccCceEEE
Confidence 5899999865322 1111 2333 34556665 33 445555444433 3333322222211 11222223333
Q ss_pred eC-CCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeec--CCCcEEE
Q 004329 159 IP-SGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVG--HTAIVYS 234 (760)
Q Consensus 159 ~~-~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--h~~~v~~ 234 (760)
+. .+. ++-. ....||+++.......+....+...+.+......++.++.++.+...++....++.... ....|.|
T Consensus 457 S~i~g~~lvQv-Ts~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaC 535 (1096)
T KOG1897|consen 457 STINGNQLVQV-TSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVAC 535 (1096)
T ss_pred EccCCceEEEE-ecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEE
Confidence 22 122 2222 23457777765455555554444444454444558888888888777765444444333 3568889
Q ss_pred EEEeCCC-------eEEEEeCCCcEEEEe---CCceEEEE--e---cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 235 IDSHASG-------LIVSGSEDRFAKIWK---DGVCVQSI--E---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 235 v~~~p~~-------~l~s~s~Dg~I~iwd---~~~~~~~~--~---~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+.++|-| +++.|.++..+.+-- +...+... . -|.+|.-.++-.|+. ++++..||.+..|-++..
T Consensus 536 LDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 536 LDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred EecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 9988742 677777777666553 22222222 1 344555556655555 888889999977665543
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.17 E-value=5.9 Score=39.83 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=106.9
Q ss_pred CceEEEEEeCCCe-EEEEeCCC--eEEEEecC-CceEEEee-cCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEE
Q 004329 190 DTVRGLSVMPGVG-IISASHDC--TIRLWALT-GQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQ 262 (760)
Q Consensus 190 ~~V~~l~~~~~~~-l~s~s~dg--~I~iwd~~-~~~~~~~~-~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~ 262 (760)
.-..++.+..++. +-+.+.-| .|+.+|+. ++...... ...-.--.++...+....-.=.++...+|| +-+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 3456788855666 66777776 68888875 45444433 334455667777665555556788899999 567788
Q ss_pred EEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccC
Q 004329 263 SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPG 341 (760)
Q Consensus 263 ~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g 341 (760)
++..++.-|.++ .||+ ++.+.....++++|..+-+....+.+......+...---..- +.....-.+
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i----------~G~IyANVW 192 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI----------NGKIYANVW 192 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE----------TTEEEEEET
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE----------cCEEEEEeC
Confidence 888888889999 4555 888888899999998887776666544322222111100000 122222223
Q ss_pred CCcceEEEEeeC-CceEEEEEeccccceee---------ccceeeCCC--CCCCcccccCccceEEEEeecCC
Q 004329 342 TNAGQTKVVREG-DNGVAYSWDMKEQKWDK---------LGEVVDGPD--DGMNRPILDGIQYDYVFDVDIGD 402 (760)
Q Consensus 342 ~~~g~~~~v~~~-~~~~~~~w~~~~~~W~~---------~g~~~~~~~--~~~~~~~~~g~~yd~vf~vdi~~ 402 (760)
..+- .+.-+. .+.+.-..|.+. .+.. -.+|..+.+ +..+.....||.|+.+|.|++.+
T Consensus 193 ~td~--I~~Idp~tG~V~~~iDls~-L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e 262 (264)
T PF05096_consen 193 QTDR--IVRIDPETGKVVGWIDLSG-LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE 262 (264)
T ss_dssp TSSE--EEEEETTT-BEEEEEE-HH-HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred CCCe--EEEEeCCCCeEEEEEEhhH-hhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence 3222 222233 323333444322 1211 134555543 24467778999999999998743
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.16 E-value=1.2 Score=48.85 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=90.9
Q ss_pred ceeEEeecCCcCeEEEEEeCCCc-E--EEEECC--CcEEEEeCCCceEE-eecCCCceEEEEEeCCCe--EEEEeCCCeE
Q 004329 141 KLVEFWEAHNAPIQTVIRIPSGE-I--VSGSSD--TTIKLWKGKKCAQT-FVGHTDTVRGLSVMPGVG--IISASHDCTI 212 (760)
Q Consensus 141 ~~~~~~~~~~~~v~~v~~~~~~~-l--~tgs~d--g~i~iwd~~~~~~~-~~~h~~~V~~l~~~~~~~--l~s~s~dg~I 212 (760)
.....+......+..-.|+|++. + ++-... ..+.+++....... .....+.-..-.|+|+++ +++...||..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCc
Confidence 33344444455666778888877 2 222223 35788885543322 222333444567899777 5667777775
Q ss_pred E--EEecCCceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe---CCceEEEEecC-CcEEEEEEccCCc-EEE
Q 004329 213 R--LWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIEHP-GCVWDAKFLENGD-IVT 283 (760)
Q Consensus 213 ~--iwd~~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd---~~~~~~~~~~~-~~v~~v~~~~~g~-lvt 283 (760)
. +.|+.++....+....+.-..=.|+|+| .+++.+..|.-.||- .+...+.+... +.-..-.|+|||+ ++.
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 5 4567776665554434444466799999 566666777766665 44444555422 2223778899999 443
Q ss_pred EEc-CCc--EEEEeCCCC
Q 004329 284 ACS-DGV--TRIWTVHSD 298 (760)
Q Consensus 284 ~~~-dg~--I~vw~~~~~ 298 (760)
.+. +|. |.+.++.++
T Consensus 343 ~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 343 ESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EeccCCceeeEEeccCCC
Confidence 333 455 444554443
No 380
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.12 E-value=7.6 Score=39.55 Aligned_cols=61 Identities=16% Similarity=0.403 Sum_probs=47.4
Q ss_pred EEEeCCCcEEEEe-CCceEEEEecCC---cEEEEEEcc------CCcEEEEEc-CCcEEEEeCCCCeeechh
Q 004329 244 VSGSEDRFAKIWK-DGVCVQSIEHPG---CVWDAKFLE------NGDIVTACS-DGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 244 ~s~s~Dg~I~iwd-~~~~~~~~~~~~---~v~~v~~~~------~g~lvt~~~-dg~I~vw~~~~~~~~~~~ 304 (760)
+.|..-|.|-+|| .+..++++.+.+ ..|.++..| .|.++.|-- ||+|..||..+++.+..+
T Consensus 216 v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 4445567899999 899999997554 678898866 455666655 999999999999876544
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=94.04 E-value=9.6 Score=40.43 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=118.9
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe----CCCccEEEEEecCCeEEEEECCCeEEEE-EC
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ----GHKLQVTGVTLDNEDIVSSSVDSTLKRW-RK 139 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~----~h~~~V~~l~~~~~~l~sgs~dg~v~vw-d~ 139 (760)
...+.+|+|..+.. .+++| .+|.|..= .+.|+.-.... .....+.++.+.++..+.++..|.|..- |-
T Consensus 45 ~~~l~~v~F~d~~~-----g~avG-~~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNH-----GWLVG-SNRTLLET-NDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLLLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCc-----EEEEE-CCCEEEEE-cCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceEEEECCC
Confidence 56788999985554 24444 45654331 12233222211 1223467777765444444555554433 33
Q ss_pred CceeEEee---cCCcCeEEEEEeCCCcEEEEECCCcEEEE-eCCCceEE-eecCCCceEEEEEeCCCeEEEEeCCCeEEE
Q 004329 140 GKLVEFWE---AHNAPIQTVIRIPSGEIVSGSSDTTIKLW-KGKKCAQT-FVGHTDTVRGLSVMPGVGIISASHDCTIRL 214 (760)
Q Consensus 140 ~~~~~~~~---~~~~~v~~v~~~~~~~l~tgs~dg~i~iw-d~~~~~~~-~~~h~~~V~~l~~~~~~~l~s~s~dg~I~i 214 (760)
++.-.... ........+.....+.+..++..|.|..= |.++.-.. .......+.++.+.|++.++..+..|.+..
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~ 197 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYS 197 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEE
Confidence 32222211 01112222333333333344444544332 33322222 222345788899999888777777887654
Q ss_pred E-ecCCceEEEee-cCCCcEEEEEEeCCCeEEEEeCCCcEEEE--eCCceEEEEecC-----CcEEEEEEccCCcEEEEE
Q 004329 215 W-ALTGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIEHP-----GCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 215 w-d~~~~~~~~~~-~h~~~v~~v~~~p~~~l~s~s~Dg~I~iw--d~~~~~~~~~~~-----~~v~~v~~~~~g~lvt~~ 285 (760)
- |-.++.-.... .-...++++.+.+++.++..+..|.+++= |.+..-+....+ ..+.++.+.+++.+++++
T Consensus 198 s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 198 TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc
Confidence 3 33333222222 34567899999998855555677877653 343333322222 357889999988888888
Q ss_pred cCCcEEEEeCCCCe
Q 004329 286 SDGVTRIWTVHSDK 299 (760)
Q Consensus 286 ~dg~I~vw~~~~~~ 299 (760)
.+|.+. ...+.++
T Consensus 278 ~~G~v~-~S~d~G~ 290 (334)
T PRK13684 278 GNGTLL-VSKDGGK 290 (334)
T ss_pred CCCeEE-EeCCCCC
Confidence 888665 3445444
No 382
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.72 E-value=3 Score=45.63 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=81.2
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEEE---CC-CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATSS---RD-RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tgs---~D-g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
.+..-...+..-+|+|+++ ++..+ .. ..+.++++.++... ..... .+.-..-+|+|++.. ++++.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~---~i~~~---~g~~~~P~fspDG~~----l~f~~ 256 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP---VILNF---NGNNGAPAFSPDGSK----LAFSS 256 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc---eeecc---CCccCCccCCCCCCE----EEEEE
Confidence 3333455667778999988 44332 22 35889999877622 22222 333345689999985 47777
Q ss_pred eCCCe--EEEEECCCCceEEEEeCCCccEEEEEe--cCCe-EEEEECCCeEEEE--ECC-ceeEEeecCCcCeEEEEEeC
Q 004329 89 GMDTM--VLVWDLGSGEKVQTLQGHKLQVTGVTL--DNED-IVSSSVDSTLKRW--RKG-KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 89 s~dg~--I~vwd~~~~~~~~~l~~h~~~V~~l~~--~~~~-l~sgs~dg~v~vw--d~~-~~~~~~~~~~~~v~~v~~~~ 160 (760)
..||. |++.|+.++...+ +....+.-+.=.| ++.. +++.+..|.-.+| +.. .....+......-..-.++|
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence 77876 5566776665333 3322221122233 3555 4555566666666 443 22233333333333678899
Q ss_pred CCc-EEEEE-CCCc
Q 004329 161 SGE-IVSGS-SDTT 172 (760)
Q Consensus 161 ~~~-l~tgs-~dg~ 172 (760)
+|. ++..+ .+|.
T Consensus 336 dG~~i~~~~~~~g~ 349 (425)
T COG0823 336 DGDKIVFESSSGGQ 349 (425)
T ss_pred CCCEEEEEeccCCc
Confidence 988 33333 3455
No 383
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.53 E-value=11 Score=42.60 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
...++++.-+|.++ +++++.||+|++|+..+...... .. ...+-..+.|...+ +++...|..+.-|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski---~~---~~~p~~nlv~tnhg-------l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI---CE---EAKPKENLVFTNHG-------LVTATSDRRALAW 80 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh---hh---hcCCccceeeeccc-------eEEEeccchhhee
Confidence 45677888889998 99999999999999864432111 11 11222334444333 6777777777777
Q ss_pred EC
Q 004329 98 DL 99 (760)
Q Consensus 98 d~ 99 (760)
.-
T Consensus 81 ~~ 82 (1636)
T KOG3616|consen 81 KE 82 (1636)
T ss_pred ec
Confidence 64
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.39 E-value=11 Score=39.05 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=107.8
Q ss_pred EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 22 VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 22 V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
..+|.|..+.-+++| ..+. .+...+.+. .+..+..-..-.+....+....+.. ....+..|.|+.= .+.
T Consensus 64 l~~I~f~~~~g~ivG-~~g~-ll~T~DgG~--tW~~v~l~~~lpgs~~~i~~l~~~~------~~l~~~~G~iy~T-~Dg 132 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPGL-LLHTTDGGK--TWERVPLSSKLPGSPFGITALGDGS------AELAGDRGAIYRT-TDG 132 (302)
T ss_dssp EEEEEEETTEEEEEE-ETTE-EEEESSTTS--S-EE----TT-SS-EEEEEEEETTE------EEEEETT--EEEE-SST
T ss_pred EEEEEecCCceEEEc-CCce-EEEecCCCC--CcEEeecCCCCCCCeeEEEEcCCCc------EEEEcCCCcEEEe-CCC
Confidence 566777654325544 4453 333333333 3433321111223333444444433 4444555655432 233
Q ss_pred CceE-EEEeCCCccEEEEEec-CCeEEEEECCCeE-EEEECCce--eEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEE
Q 004329 102 GEKV-QTLQGHKLQVTGVTLD-NEDIVSSSVDSTL-KRWRKGKL--VEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLW 176 (760)
Q Consensus 102 ~~~~-~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v-~vwd~~~~--~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iw 176 (760)
|+.- .....-...+..+... ++.++..+..|.+ .-||.+.. ...-+.....|.++.|.|++.+......|.|++=
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s 212 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFS 212 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEE
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEc
Confidence 4332 2233445667776664 5555555566655 57888743 2222335678999999999998777799999988
Q ss_pred eCCCceEEeec-------CCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEee---cCCCcEEEEEEeCCCeEEEE
Q 004329 177 KGKKCAQTFVG-------HTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMV---GHTAIVYSIDSHASGLIVSG 246 (760)
Q Consensus 177 d~~~~~~~~~~-------h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~h~~~v~~v~~~p~~~l~s~ 246 (760)
+.......+.. ..-.+..+++.+++.+.+++..|.+.+=.-.|+.=.... .-....+.|.|.++..-++.
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 73333333332 223378899998888777777776665444444433332 23557888998776655666
Q ss_pred eCCCcEEEE
Q 004329 247 SEDRFAKIW 255 (760)
Q Consensus 247 s~Dg~I~iw 255 (760)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 788877655
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.05 E-value=16 Score=39.99 Aligned_cols=227 Identities=15% Similarity=0.151 Sum_probs=124.1
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCC----eEEEEECCCCceEEEE-eCCCccEEEEEec--CCeEEEEECCC--------
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDT----MVLVWDLGSGEKVQTL-QGHKLQVTGVTLD--NEDIVSSSVDS-------- 132 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg----~I~vwd~~~~~~~~~l-~~h~~~V~~l~~~--~~~l~sgs~dg-------- 132 (760)
+....++|+++. ++++-+..| .++++|+.+++.+... ... ....+.|. +..|+....+.
T Consensus 126 ~~~~~~Spdg~~----la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSPDGKR----LAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETTTSSE----EEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECCCCCE----EEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 346778888873 234445545 4999999999765432 221 11237886 34455554333
Q ss_pred ---eEEEEECCce----eEEeecCCcC--eEEEEEeCCCc--EEEEECCC---cEEEEeCCC------ceEEeecCCCce
Q 004329 133 ---TLKRWRKGKL----VEFWEAHNAP--IQTVIRIPSGE--IVSGSSDT---TIKLWKGKK------CAQTFVGHTDTV 192 (760)
Q Consensus 133 ---~v~vwd~~~~----~~~~~~~~~~--v~~v~~~~~~~--l~tgs~dg---~i~iwd~~~------~~~~~~~h~~~V 192 (760)
.|+.|+.+.. ...+...... ...+..+++++ ++...... .+.+.+... ..+.+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 3677777632 2444444333 55778888888 33333333 466667554 344454444444
Q ss_pred EEEEEeCCCeEEEEeC----CCeEEEEecCCc----eEEEeecCCC--cEEEEEEeCCCeEEEEeCCCc--EEEEe-C-C
Q 004329 193 RGLSVMPGVGIISASH----DCTIRLWALTGQ----VLMEMVGHTA--IVYSIDSHASGLIVSGSEDRF--AKIWK-D-G 258 (760)
Q Consensus 193 ~~l~~~~~~~l~s~s~----dg~I~iwd~~~~----~~~~~~~h~~--~v~~v~~~p~~~l~s~s~Dg~--I~iwd-~-~ 258 (760)
....-+.++.+..-++ .+.|...++... ....+..|.. .+..+....+.+++..-.++. |++++ . +
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 4433333565443333 355666665432 2335556655 466666655546666666664 67778 5 5
Q ss_pred ceEEEEecCC--cEEEEEEccCCc--EEEEEc---CCcEEEEeCCCCee
Q 004329 259 VCVQSIEHPG--CVWDAKFLENGD--IVTACS---DGVTRIWTVHSDKV 300 (760)
Q Consensus 259 ~~~~~~~~~~--~v~~v~~~~~g~--lvt~~~---dg~I~vw~~~~~~~ 300 (760)
.....+..+. .|..+...++++ ++..++ -+++..||+.+++.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 6666666443 566666556665 344443 57888889888775
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.97 E-value=5.2 Score=45.81 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred EEEEECC------CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC------CeEEEEECC
Q 004329 33 IATSSRD------RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD------TMVLVWDLG 100 (760)
Q Consensus 33 l~tgs~D------g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d------g~I~vwd~~ 100 (760)
++.|+.+ ..+..||..++. |.....+. +...-.+++...+. +.++||.| .++..||..
T Consensus 288 ~~vGG~~~~~~~~~~ve~yd~~~~~---w~~~a~m~-~~r~~~~~~~~~~~------lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 288 VAVGGYNRQGQSLRSVECYDPKTNE---WSSLAPMP-SPRCRVGVAVLNGK------LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred EEECCCCCCCcccceeEEecCCcCc---EeecCCCC-cccccccEEEECCE------EEEEccccCCCcccceEEEecCC
Confidence 6777776 367788887553 33333333 23334455554442 57888888 357788888
Q ss_pred CCceEEE--EeCCCccEEEEEecCCeEEEEECCCe-----EEEEECCceeEEeec-CCcCeEEEEE-eCCCc-EEEEECC
Q 004329 101 SGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVDST-----LKRWRKGKLVEFWEA-HNAPIQTVIR-IPSGE-IVSGSSD 170 (760)
Q Consensus 101 ~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~dg~-----v~vwd~~~~~~~~~~-~~~~v~~v~~-~~~~~-l~tgs~d 170 (760)
+++-... +.............+...++|+.||. +-.||.......... .......... .-+|+ +++|+.+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 7763321 22222222233334666888888875 566776544333322 2222222222 22455 5567655
Q ss_pred C------cEEEEeCCCceEEeec---CCCceEEEEEeCCCeEEEEeCCCe-----EEEEecCCce
Q 004329 171 T------TIKLWKGKKCAQTFVG---HTDTVRGLSVMPGVGIISASHDCT-----IRLWALTGQV 221 (760)
Q Consensus 171 g------~i~iwd~~~~~~~~~~---h~~~V~~l~~~~~~~l~s~s~dg~-----I~iwd~~~~~ 221 (760)
+ ++..||..+..-.... ....-..++...+..++.|+.|+. |..||.....
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 4 4556664433222211 001112244443444777777762 5556654443
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.91 E-value=4.8 Score=44.46 Aligned_cols=169 Identities=11% Similarity=0.137 Sum_probs=94.4
Q ss_pred ccEEEEEecC-CeEEEEE---CCCeEEEEECCceeEEeecCCcCeEEEEEeCCC-----cEEEEECCCcEEEEeCC----
Q 004329 113 LQVTGVTLDN-EDIVSSS---VDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSG-----EIVSGSSDTTIKLWKGK---- 179 (760)
Q Consensus 113 ~~V~~l~~~~-~~l~sgs---~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~-----~l~tgs~dg~i~iwd~~---- 179 (760)
.++..++|.+ +.++-.. .+|.+++=|.. .-+.-..|..+.|.|-+ .+++....+.|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 5778889974 4433222 23333332221 12333458889999853 28888899999999733
Q ss_pred ---CceEEeecC---CC--ceEEEEEeCCCeEEEEeCCCeE-EEEec--CCceEEEeecCCCcEEEEEEeCCC--eEEEE
Q 004329 180 ---KCAQTFVGH---TD--TVRGLSVMPGVGIISASHDCTI-RLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSG 246 (760)
Q Consensus 180 ---~~~~~~~~h---~~--~V~~l~~~~~~~l~s~s~dg~I-~iwd~--~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~ 246 (760)
+.......+ .- --.++.|+|...+++.-....+ .++++ ++..+..-....+.|.|.+|.+|| ++++.
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence 111111111 11 1246778996664443333333 34443 344444434667899999999999 55555
Q ss_pred eCCCcEEEEeCC-ce------EEEEecCCcEEEEEEccCCcEEEEEc
Q 004329 247 SEDRFAKIWKDG-VC------VQSIEHPGCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 247 s~Dg~I~iwd~~-~~------~~~~~~~~~v~~v~~~~~g~lvt~~~ 286 (760)
|..=.-+|||.. +- -..|...+.|.++.-.-|.+++.+.+
T Consensus 175 GSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaTE 221 (671)
T PF15390_consen 175 GSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVATE 221 (671)
T ss_pred CCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEEec
Confidence 666667899921 11 12233455666666555555555444
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=12 Score=37.92 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=108.2
Q ss_pred eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC-CccEEEEEec-CCe-EEEEECCCeEEEE
Q 004329 61 LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH-KLQVTGVTLD-NED-IVSSSVDSTLKRW 137 (760)
Q Consensus 61 ~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~~-~~~-l~sgs~dg~v~vw 137 (760)
+.+-...+.++.|+|+.+ .|++......-.||=-.+|+.++++.-. -...-.|.+- ++. .++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~r-----tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTR-----TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcc-----eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence 344555699999999998 4677777777667766778888886521 1223345554 444 3333455666665
Q ss_pred EC--C-------ceeEEee--cC-CcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceEEeec-----C-------CCce
Q 004329 138 RK--G-------KLVEFWE--AH-NAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVG-----H-------TDTV 192 (760)
Q Consensus 138 d~--~-------~~~~~~~--~~-~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~-----h-------~~~V 192 (760)
.. + .....+. .+ +...-.++|.+.++ ++.+-...-+.+|........+.. + -..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 32 2 1111111 12 45667899999765 778878787888764332221111 1 1346
Q ss_pred EEEEEeC--CCeEEEEeCCCeEEEEecCCceEEEeecCC---------CcEEEEEEeCCCeEEEEeCCC
Q 004329 193 RGLSVMP--GVGIISASHDCTIRLWALTGQVLMEMVGHT---------AIVYSIDSHASGLIVSGSEDR 250 (760)
Q Consensus 193 ~~l~~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~---------~~v~~v~~~p~~~l~s~s~Dg 250 (760)
.++.+.+ +..++-+.+++.+.-.|..|+.+..+.-+. ...-.++..++|.|...|+-+
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 6777776 333777788888888888888765554221 123455555555444444443
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.63 E-value=0.36 Score=34.42 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK 104 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 104 (760)
...|.+++|+|..+ +++.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-----LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-----LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-----EEEEEECCCeEEEEEC-CCcC
Confidence 45699999999998 7999999999999998 4544
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=0.52 Score=54.97 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=26.0
Q ss_pred EEEEeCCCeEEEEecCCceE--EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 203 IISASHDCTIRLWALTGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 203 l~s~s~dg~I~iwd~~~~~~--~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
++.|+..|.+...|+++... ..-..-.++|++++|+.+| .++.|-.+|.|.+||
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWD 158 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEE
Confidence 45555555555555544322 1111223455555555555 555555555555555
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.52 E-value=11 Score=43.15 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=91.2
Q ss_pred cEEEEEec--CCeEEEEE------CCCe--EEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECC-CcEEEEeCCC-
Q 004329 114 QVTGVTLD--NEDIVSSS------VDST--LKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSD-TTIKLWKGKK- 180 (760)
Q Consensus 114 ~V~~l~~~--~~~l~sgs------~dg~--v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~d-g~i~iwd~~~- 180 (760)
.+.+.+++ ++.++... .|.. +.+++.+.....+.. ....+.-.|+|+|. +++.+.. ..+++.+...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 45555565 55544443 2443 444465433333322 22377788999966 5555433 2222222111
Q ss_pred -ceEE--ee------cCCCceEEEEEeCCCe-EEEEeCCCeEEEE---ec-CCc-eE---EEee-cCCCcEEEEEEeCCC
Q 004329 181 -CAQT--FV------GHTDTVRGLSVMPGVG-IISASHDCTIRLW---AL-TGQ-VL---MEMV-GHTAIVYSIDSHASG 241 (760)
Q Consensus 181 -~~~~--~~------~h~~~V~~l~~~~~~~-l~s~s~dg~I~iw---d~-~~~-~~---~~~~-~h~~~v~~v~~~p~~ 241 (760)
.+.. .. .....|..+.|+||+. ++... +|.|.+= .. .|. .+ ..+. +-...+.++.|.+++
T Consensus 430 gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 430 GQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred ceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 1110 00 2356799999999887 44333 5777773 32 232 11 1121 223346889999999
Q ss_pred eEEEEeCCCcEEEEe---CCceEEEEe---cCCcEEEEEEccCCcEEEEEcCCcEE
Q 004329 242 LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWDAKFLENGDIVTACSDGVTR 291 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd---~~~~~~~~~---~~~~v~~v~~~~~g~lvt~~~dg~I~ 291 (760)
.|+.+..++...+|. .+.....+. ...++.+++-++ +.++....+|.+.
T Consensus 509 ~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~~ 563 (591)
T PRK13616 509 SLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVLQ 563 (591)
T ss_pred EEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceEE
Confidence 555666666566665 443333223 245677777765 3566666676443
No 392
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=3.1 Score=47.13 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred eEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 10 QLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
++..++.-..+.+-.+.|+.+..|+....||++++|++. +...... ..-.......|..+.+...| ++.-.
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~-svg~e~~~~~I~ec~~f~~G-------Vavlt 144 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESN-SVGFESQMSDIVECRFFHNG-------VAVLT 144 (829)
T ss_pred cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhccc-ccccccccCceeEEEEecCc-------eEEEe
Confidence 333443333448889999999999999999999999987 4321111 11112223334444444433 55555
Q ss_pred CCCeEEEEE
Q 004329 90 MDTMVLVWD 98 (760)
Q Consensus 90 ~dg~I~vwd 98 (760)
.+|.+.+-+
T Consensus 145 ~~g~v~~i~ 153 (829)
T KOG2280|consen 145 VSGQVILIN 153 (829)
T ss_pred cCCcEEEEc
Confidence 566665544
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.26 E-value=0.45 Score=33.89 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=24.4
Q ss_pred cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 266 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 266 ~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
.+..|..++|+|..+ ++.+..+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 445788888888888 6777778888888873
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.06 E-value=5.5 Score=45.37 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=55.3
Q ss_pred CeEEEEeCC---CCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe-CCCeEEEEECCCCceEEEEe-CCCcc
Q 004329 40 RTVRFWSLD---PSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG-MDTMVLVWDLGSGEKVQTLQ-GHKLQ 114 (760)
Q Consensus 40 g~i~iWd~~---~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs-~dg~I~vwd~~~~~~~~~l~-~h~~~ 114 (760)
|.|+.|... ......+.....+........-+.-+..+. ++... ....+.|||...+.....-. ...+.
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k------~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~ 74 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKK------IAVVDSSRSELTIWDTRSGVLEYEESFSEDDP 74 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCc------EEEEECCCCEEEEEEcCCcEEEEeeeecCCCc
Confidence 456666532 112223334444444444444554444443 34333 44579999998886543322 45788
Q ss_pred EEEEEec----CCeEEEEECCCeEEEEEC
Q 004329 115 VTGVTLD----NEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 115 V~~l~~~----~~~l~sgs~dg~v~vwd~ 139 (760)
|.++.|. +..+++.+-.+.|.+|-.
T Consensus 75 I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 75 IRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 9999984 455888888888888843
No 395
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=15 Score=41.83 Aligned_cols=184 Identities=12% Similarity=0.130 Sum_probs=88.5
Q ss_pred CCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
+..-+|..+|... +. +.--.|+||+.. |.. .....-.|. .+-.+.|+.+.. |++...+|++++|
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~l----L~~~~w~~~-~lI~mgWs~~ee------LI~v~k~g~v~Vy 109 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQL----LGRILWKHG-ELIGMGWSDDEE------LICVQKDGTVHVY 109 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccc----hHHHHhcCC-CeeeecccCCce------EEEEeccceEEEe
Confidence 3344455554332 22 233468888876 441 122222333 788999998876 8999999999999
Q ss_pred ECCCCceEEEE----eCCCccEEEEEecCCeEEEEECCCeEEEE-ECCc-eeEEeec---CCcCeEEEEEeCCCcEEEE-
Q 004329 98 DLGSGEKVQTL----QGHKLQVTGVTLDNEDIVSSSVDSTLKRW-RKGK-LVEFWEA---HNAPIQTVIRIPSGEIVSG- 167 (760)
Q Consensus 98 d~~~~~~~~~l----~~h~~~V~~l~~~~~~l~sgs~dg~v~vw-d~~~-~~~~~~~---~~~~v~~v~~~~~~~l~tg- 167 (760)
++. |+.+... ......|..+.+..+-++.-..+|.+.+- +.+. ....+.. ..-+-.|-...++++-.++
T Consensus 110 ~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 110 GLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred ecc-hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 985 3333321 12223343333332334444455555544 3332 1112211 1111122222222221110
Q ss_pred -ECCCc--EEEEe---CCCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC
Q 004329 168 -SSDTT--IKLWK---GKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT 218 (760)
Q Consensus 168 -s~dg~--i~iwd---~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~ 218 (760)
.-+-. ..++. .+.....+......+..+.++|+.. ++--..+|.|.+-+.+
T Consensus 189 l~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 189 LDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred EeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 00100 01111 1111222222345677788888665 7777788888887764
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.87 E-value=3.4 Score=45.55 Aligned_cols=141 Identities=16% Similarity=0.280 Sum_probs=84.5
Q ss_pred cCeEEEEEeCCCcE-EEEE--CCCcEEEEeCCCceEEeecCCCceEEEEEeC----CC-eEEEEeCCCeEEEEecC----
Q 004329 151 APIQTVIRIPSGEI-VSGS--SDTTIKLWKGKKCAQTFVGHTDTVRGLSVMP----GV-GIISASHDCTIRLWALT---- 218 (760)
Q Consensus 151 ~~v~~v~~~~~~~l-~tgs--~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~I~iwd~~---- 218 (760)
.++..++|....++ ++.- .+|.+++=|. ..-+.-..|.+++|.| +. .+++......|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 46778888755443 3332 2333333321 2234445689999999 33 28888999999999862
Q ss_pred --CceEEEeec-C--CC--cEEEEEEeCCC-eEEEEeCCCcEEEEe----CCceEEEEecCCcEEEEEEccCCc--EEEE
Q 004329 219 --GQVLMEMVG-H--TA--IVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAKFLENGD--IVTA 284 (760)
Q Consensus 219 --~~~~~~~~~-h--~~--~v~~v~~~p~~-~l~s~s~Dg~I~iwd----~~~~~~~~~~~~~v~~v~~~~~g~--lvt~ 284 (760)
++.+..... . .- --.++.|+|.. .|+.-.....-.+++ ......-+...+.|.|.+|.+||+ +++.
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence 222222111 1 11 22467799998 444433333222333 444555567888999999999999 4555
Q ss_pred EcCCcEEEEeCC
Q 004329 285 CSDGVTRIWTVH 296 (760)
Q Consensus 285 ~~dg~I~vw~~~ 296 (760)
++.=.-++||-.
T Consensus 175 GSsLHSyiWd~~ 186 (671)
T PF15390_consen 175 GSSLHSYIWDSA 186 (671)
T ss_pred CCeEEEEEecCc
Confidence 555566788754
No 397
>PHA02713 hypothetical protein; Provisional
Probab=91.63 E-value=8.3 Score=44.14 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=24.7
Q ss_pred EEEEEeCCC-----eEEEEECCCCceEE--EEeCCCccEEEEEecCCeEEEEECC
Q 004329 84 GLVSGGMDT-----MVLVWDLGSGEKVQ--TLQGHKLQVTGVTLDNEDIVSSSVD 131 (760)
Q Consensus 84 ~l~sgs~dg-----~I~vwd~~~~~~~~--~l~~h~~~V~~l~~~~~~l~sgs~d 131 (760)
+.+.||.++ .+..||..+.+-.. .+.........+..++...+.|+.+
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence 456677654 48889988764322 1221112222334445556666654
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.66 E-value=0.11 Score=58.86 Aligned_cols=197 Identities=15% Similarity=0.225 Sum_probs=110.7
Q ss_pred eccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCC--CCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 15 LRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDP--SDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
++|..+.|-.+.|-.... +. -.-|.+.||+++- |+.......+........+.-+.|.|--.. ..++..+-.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~--~~~ic~~~~ 203 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVN--KVYICYGLK 203 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccc--cceeeeccC
Confidence 456777787887753322 22 2336788998762 322222223333444555666777664321 125788888
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEe-------------cCCeEEEEECCCeEEEEEC-------CceeEEeecCC
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTL-------------DNEDIVSSSVDSTLKRWRK-------GKLVEFWEAHN 150 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~-------------~~~~l~sgs~dg~v~vwd~-------~~~~~~~~~~~ 150 (760)
++.|++.++.+... ..+.+|...+..+++ ++..++..+.||.++.|.+ -.++..++.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999887765432 344567766655433 4666888888998888853 25677788887
Q ss_pred -cCeEEEEEeCC-------Cc---EEEEE-CCCcEEEEeCC--Cce--------EEeecCCCceEEEEEeC--CCeEEEE
Q 004329 151 -APIQTVIRIPS-------GE---IVSGS-SDTTIKLWKGK--KCA--------QTFVGHTDTVRGLSVMP--GVGIISA 206 (760)
Q Consensus 151 -~~v~~v~~~~~-------~~---l~tgs-~dg~i~iwd~~--~~~--------~~~~~h~~~V~~l~~~~--~~~l~s~ 206 (760)
.+-.|..++.+ +. +++++ .+..+++|... +|. .....|...|+.+.... -..+++.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHh
Confidence 44334334432 11 33433 45668888722 332 12223433333322221 1124556
Q ss_pred eCCCeEEEEe
Q 004329 207 SHDCTIRLWA 216 (760)
Q Consensus 207 s~dg~I~iwd 216 (760)
+-+++|.+|.
T Consensus 363 ~v~~~i~~~q 372 (1283)
T KOG1916|consen 363 SVDGTIKIWQ 372 (1283)
T ss_pred hhHHHHHHhh
Confidence 7788898886
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.50 E-value=9.3 Score=41.18 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=74.2
Q ss_pred CeEEEEEeCCCcEEEEEC------------CC-cEEEEeCC----C--ceEEeecCCCceEEEEEeCCCeEEEEeCCCeE
Q 004329 152 PIQTVIRIPSGEIVSGSS------------DT-TIKLWKGK----K--CAQTFVGHTDTVRGLSVMPGVGIISASHDCTI 212 (760)
Q Consensus 152 ~v~~v~~~~~~~l~tgs~------------dg-~i~iwd~~----~--~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I 212 (760)
....+++.++|+++++.. .+ .|.+++.. . ....+...-...+.+++.+++ +++++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~ 93 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDIL 93 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEE
Confidence 345677888888666542 22 66666421 1 123444444556889998888 6666555544
Q ss_pred EEEecCC------c--eEEE-eec----CCCcEEEEEEeCCC-eEEEEeCC-------------------CcEEEEe-CC
Q 004329 213 RLWALTG------Q--VLME-MVG----HTAIVYSIDSHASG-LIVSGSED-------------------RFAKIWK-DG 258 (760)
Q Consensus 213 ~iwd~~~------~--~~~~-~~~----h~~~v~~v~~~p~~-~l~s~s~D-------------------g~I~iwd-~~ 258 (760)
++.|..+ + .+.. +.. +......+.+.|+| +.++-+.. |.|.-++ .+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 4545432 1 1211 212 23457789999999 33333311 3344445 33
Q ss_pred ceEEEEecC-CcEEEEEEccCCcEEEEEc
Q 004329 259 VCVQSIEHP-GCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 259 ~~~~~~~~~-~~v~~v~~~~~g~lvt~~~ 286 (760)
.....+... ...+.++|+++|++.++..
T Consensus 174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 344444432 2568899999999655544
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.33 E-value=7.5 Score=44.33 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=66.9
Q ss_pred EEEEeCCCeEEEEeC-CCeEEEEecCCceEEEee--cCCCcEEEEEEeC--CC-eEEEEeCCCcEEEEe-----------
Q 004329 194 GLSVMPGVGIISASH-DCTIRLWALTGQVLMEMV--GHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK----------- 256 (760)
Q Consensus 194 ~l~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~--~h~~~v~~v~~~p--~~-~l~s~s~Dg~I~iwd----------- 256 (760)
-+.-+.-++++.... ...+.|||..+..+..-. .....|..+.|.. ++ .+++.|..+.|.++-
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 333333344444444 456899998765533222 3478899998864 55 888889999999985
Q ss_pred CCceEEEEe---cC-CcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 257 DGVCVQSIE---HP-GCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 257 ~~~~~~~~~---~~-~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
.-..++.+. +. .+|.+..|.++|.+++|+ +..+.|++-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 112344443 33 589999999999877665 4567777643
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.52 E-value=27 Score=40.16 Aligned_cols=177 Identities=8% Similarity=0.065 Sum_probs=87.3
Q ss_pred CCEEEEEEcCCCe-EEEEE------CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe---
Q 004329 20 DDVRGICVCDNVG-IATSS------RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG--- 89 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs------~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs--- 89 (760)
..+.+.+++|+|. ++... .|+.-.+|-...+.. ......+ .....-.|+|++.. +.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----~~~lt~g--~~~t~PsWspDG~~-----lw~v~dg~ 418 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----AVQVLEG--HSLTRPSWSLDADA-----VWVVVDGN 418 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----ceeeecC--CCCCCceECCCCCc-----eEEEecCc
Confidence 4577889999998 43333 244444554332221 1111222 23777889998763 34332
Q ss_pred ---------CCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEE---EEC-CceeEE-----ee-c
Q 004329 90 ---------MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKR---WRK-GKLVEF-----WE-A 148 (760)
Q Consensus 90 ---------~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~v---wd~-~~~~~~-----~~-~ 148 (760)
..+.+.+.+++.++... .....|..+.|+ +.+++... +|.|.+ -.. +..... +. .
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 22344444554443322 234568888887 44444443 466665 221 111111 11 2
Q ss_pred CCcCeEEEEEeCCCcEEEEECCCcEEEEe--CCCceEEe-ec--CCCceEEEEEeCCCeEEEEeCCCeE
Q 004329 149 HNAPIQTVIRIPSGEIVSGSSDTTIKLWK--GKKCAQTF-VG--HTDTVRGLSVMPGVGIISASHDCTI 212 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~l~tgs~dg~i~iwd--~~~~~~~~-~~--h~~~V~~l~~~~~~~l~s~s~dg~I 212 (760)
-...+.++.|.+++.|+++..++.-.+|. ........ .. ...++.+++-.+ +.++....+|.+
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~ 562 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVL 562 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceE
Confidence 22335677888888776666555444553 22222111 22 244555665554 234445555533
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.28 E-value=14 Score=42.39 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=88.9
Q ss_pred EEEEEEcCCCeEEEEECC------CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe--
Q 004329 22 VRGICVCDNVGIATSSRD------RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM-- 93 (760)
Q Consensus 22 V~~v~~~~~~~l~tgs~D------g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~-- 93 (760)
-.++++.++.-.++||.| .++..||..+++ |.....+............ ++. +.++||.||.
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---W~~~a~M~~~R~~~~v~~l--~g~-----iYavGG~dg~~~ 394 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---WTPVAPMNTKRSDFGVAVL--DGK-----LYAVGGFDGEKS 394 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCc---eeccCCccCccccceeEEE--CCE-----EEEEeccccccc
Confidence 445555555448999999 367778877554 5443333332222222221 222 5788888864
Q ss_pred ---EEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECCCe------EEEEECCceeEEeecC----CcCeEEEEE
Q 004329 94 ---VLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVDST------LKRWRKGKLVEFWEAH----NAPIQTVIR 158 (760)
Q Consensus 94 ---I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~dg~------v~vwd~~~~~~~~~~~----~~~v~~v~~ 158 (760)
+..||..+.+.... +.......-...+.+...++|+.++. +..||........... ... ..++.
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~ 473 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV 473 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEE
Confidence 77788876643222 22222223333444666777876654 4566654333222211 111 12344
Q ss_pred eCCCcEEEEECCCc-----EEEEeCCCceEEeec---CCCceEEEEEeCCCeEEEEeCCCe
Q 004329 159 IPSGEIVSGSSDTT-----IKLWKGKKCAQTFVG---HTDTVRGLSVMPGVGIISASHDCT 211 (760)
Q Consensus 159 ~~~~~l~tgs~dg~-----i~iwd~~~~~~~~~~---h~~~V~~l~~~~~~~l~s~s~dg~ 211 (760)
..+..++.|+.|+. +..||..+..-+... +...-..++...+..++.|+.||.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 43333667777762 666775543332222 111222233333444778887754
No 403
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.23 E-value=37 Score=36.91 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=84.7
Q ss_pred CCeEEEEECCCeE-EEEECCcee--EEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCc-e--EEeec-----CCC
Q 004329 122 NEDIVSSSVDSTL-KRWRKGKLV--EFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC-A--QTFVG-----HTD 190 (760)
Q Consensus 122 ~~~l~sgs~dg~v-~vwd~~~~~--~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~-~--~~~~~-----h~~ 190 (760)
++.++..+..|.+ +-||.+... ..-......+.++.+.+++.++..+.+|.+..-+.... - ..+.. ...
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~ 328 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGF 328 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCc
Confidence 4444444444443 345555432 22223355688899999999888888888765432211 1 12221 123
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEee---cCCCcEEEEEEeCCCeEEEEeCCCcEEEE
Q 004329 191 TVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMV---GHTAIVYSIDSHASGLIVSGSEDRFAKIW 255 (760)
Q Consensus 191 ~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~h~~~v~~v~~~p~~~l~s~s~Dg~I~iw 255 (760)
.+.++.+.+++.++.++.+|.+....-.|+.-.... .-....+.+.|.+++.....+.+|.|.-|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 488899998888999999998888875555433332 23467889999887766777888887655
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.93 E-value=5.8 Score=38.58 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=67.8
Q ss_pred ceEeEEeccCCC-CE-------EEEEEcCCCe--EEEEECCCeEEEEe--CCCCCCccceeeeEeeCC---C-CCeEEEE
Q 004329 9 YQLSSELRGHED-DV-------RGICVCDNVG--IATSSRDRTVRFWS--LDPSDKRKYHSSKILLGH---T-SFVGPLA 72 (760)
Q Consensus 9 ~~l~~~l~gH~~-~V-------~~v~~~~~~~--l~tgs~Dg~i~iWd--~~~~~~~~~~~~~~~~~h---~-~~V~~l~ 72 (760)
..+..-+.+|.- .| +.++|+.+.+ ..+-+.+-+|.-|| ..++.......+..+... . -.--.++
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ 218 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT 218 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce
Confidence 445555556642 22 3556776666 67778888888888 555543222222222210 1 1111223
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCC
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNE 123 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~ 123 (760)
...++. +.++.-..++|...|+.+|+.+.+++-....|+|++|-+.
T Consensus 219 ID~eG~-----L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 219 IDTEGN-----LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EccCCc-----EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 333333 4666677789999999999999999988999999999744
No 405
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.85 E-value=30 Score=38.38 Aligned_cols=270 Identities=9% Similarity=0.023 Sum_probs=143.9
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
...|..+.+..+|.+..|+.||-- .||..+++ ..+... .....|+.+.-.-.+. +..|+.+| +++.
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gk-----alql~s~~~dk~I~al~~d~qg~------LWVGTdqG-v~~~ 230 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGK-----ALQLASPPLDKAINALIADVQGR------LWVGTDQG-VYLQ 230 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccce-----EEEcCCCcchhhHHHHHHHhcCc------EEEEeccc-eEEE
Confidence 456788888888889999988754 45555443 111111 1124555555444444 88888777 5666
Q ss_pred ECCCCceEEEE-eCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEe--ecC--CcCeEEEEEeCCCcEEEEECCC
Q 004329 98 DLGSGEKVQTL-QGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFW--EAH--NAPIQTVIRIPSGEIVSGSSDT 171 (760)
Q Consensus 98 d~~~~~~~~~l-~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~--~~~--~~~v~~v~~~~~~~l~tgs~dg 171 (760)
+.+..+..... .-....|..+.-+ .+.+-.|+.+|..+.--.+..+... +.| -+.|.++....+|.+.+++.++
T Consensus 231 e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~g 310 (671)
T COG3292 231 EAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGG 310 (671)
T ss_pred chhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCc
Confidence 65542211111 1234455555555 6668888888876554333222221 122 3455666667778899999998
Q ss_pred cEEEEeCCCce-EEeecCC-CceEEEEEeC---CCeEEEEeCCCeEEEEe-cCCceEEEeec-CCCcEEEEEEeCCCeEE
Q 004329 172 TIKLWKGKKCA-QTFVGHT-DTVRGLSVMP---GVGIISASHDCTIRLWA-LTGQVLMEMVG-HTAIVYSIDSHASGLIV 244 (760)
Q Consensus 172 ~i~iwd~~~~~-~~~~~h~-~~V~~l~~~~---~~~l~s~s~dg~I~iwd-~~~~~~~~~~~-h~~~v~~v~~~p~~~l~ 244 (760)
.+++-+..-.. ..+.... ..+...+..| +..+.-...-|.+.+-+ .+|..+..... ....|+.+++..++.+-
T Consensus 311 iv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lW 390 (671)
T COG3292 311 IVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLW 390 (671)
T ss_pred eEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEE
Confidence 88776532111 1111111 1111112222 11111111222222222 34444444332 23456666666666777
Q ss_pred EEeCCCcEEEEeCCc---eEEEEe--cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 245 SGSEDRFAKIWKDGV---CVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 245 s~s~Dg~I~iwd~~~---~~~~~~--~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
.|+...-+..|+.++ ...... ..+.|..+.-.|++.+..|+.+|.++. +.+.++...
T Consensus 391 lgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~-~pe~~~v~n 452 (671)
T COG3292 391 LGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR-DPESGRVLN 452 (671)
T ss_pred EEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec-Cccccchhc
Confidence 777774566677444 222222 345888888889999999999997754 334444433
No 406
>PHA02713 hypothetical protein; Provisional
Probab=88.68 E-value=42 Score=38.43 Aligned_cols=204 Identities=11% Similarity=0.131 Sum_probs=90.8
Q ss_pred eEEEEECCCCceEE--EEeCCCccEEEEEecCCeEEEEECC------CeEEEEECCceeEEe-ecCCcC--eEEEEEeCC
Q 004329 93 MVLVWDLGSGEKVQ--TLQGHKLQVTGVTLDNEDIVSSSVD------STLKRWRKGKLVEFW-EAHNAP--IQTVIRIPS 161 (760)
Q Consensus 93 ~I~vwd~~~~~~~~--~l~~h~~~V~~l~~~~~~l~sgs~d------g~v~vwd~~~~~~~~-~~~~~~--v~~v~~~~~ 161 (760)
.+..||..+++... .+............++...+.|+.+ ..+..||........ ..-..+ -.+++.. +
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C
Confidence 56788887765322 1221111122233345556667654 236667765332211 110111 1122333 4
Q ss_pred Cc-EEEEECCC-----cEEEEeCCCceEEeec-CCCc--eEEEEEeCCCe-EEEEeCCC---------------------
Q 004329 162 GE-IVSGSSDT-----TIKLWKGKKCAQTFVG-HTDT--VRGLSVMPGVG-IISASHDC--------------------- 210 (760)
Q Consensus 162 ~~-l~tgs~dg-----~i~iwd~~~~~~~~~~-h~~~--V~~l~~~~~~~-l~s~s~dg--------------------- 210 (760)
|+ ++.|+.++ .+..||..+..-.... ...+ -.+++.. ++. ++.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccc
Confidence 55 56777654 4777886543322211 1111 1122233 455 66676553
Q ss_pred --eEEEEecCCceEEEeecC--CCcEEEEEEeCCCeEEEEeCC------CcEEEEeCCc---eE--EEEecCCcEEEEEE
Q 004329 211 --TIRLWALTGQVLMEMVGH--TAIVYSIDSHASGLIVSGSED------RFAKIWKDGV---CV--QSIEHPGCVWDAKF 275 (760)
Q Consensus 211 --~I~iwd~~~~~~~~~~~h--~~~v~~v~~~p~~~l~s~s~D------g~I~iwd~~~---~~--~~~~~~~~v~~v~~ 275 (760)
.+..||.....-.....- ...-.+++...+...+.||.+ ..+..||..+ -. ..+..+....+++.
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 366677544332222211 111123333333355556654 2356788332 21 22222222233333
Q ss_pred ccCCc-EEEEEcCC--cEEEEeCCCCe
Q 004329 276 LENGD-IVTACSDG--VTRIWTVHSDK 299 (760)
Q Consensus 276 ~~~g~-lvt~~~dg--~I~vw~~~~~~ 299 (760)
. +|. +++||.|| .+..||..+++
T Consensus 511 ~-~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H-DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E-CCEEEEEeeecceeehhhcCccccc
Confidence 2 566 78888888 56666665554
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.51 E-value=7.3 Score=46.31 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=85.5
Q ss_pred CeEEEEEeCCCc---EEEEECCCcEEEEeCCCc-------eEEeecC------CCceEEEEEeCC--CeEEEEeCCCeEE
Q 004329 152 PIQTVIRIPSGE---IVSGSSDTTIKLWKGKKC-------AQTFVGH------TDTVRGLSVMPG--VGIISASHDCTIR 213 (760)
Q Consensus 152 ~v~~v~~~~~~~---l~tgs~dg~i~iwd~~~~-------~~~~~~h------~~~V~~l~~~~~--~~l~s~s~dg~I~ 213 (760)
++..+...+|+. ++..+.+-.|..||+++. .+.+..| ..-..++.|+|. ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 445555556655 233344456888885532 1112222 233456778883 3378889999999
Q ss_pred EEecCCc--eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-----cCCcEEEEEEccCCcEEE
Q 004329 214 LWALTGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-----HPGCVWDAKFLENGDIVT 283 (760)
Q Consensus 214 iwd~~~~--~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-----~~~~v~~v~~~~~g~lvt 283 (760)
+..++-. .+.. .......++++|+|.| .++.|-..|++.-|. .......+. ....|.+|+|.....+++
T Consensus 182 V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9886432 2222 2456678999999999 999999999999998 555555543 235899999988877443
No 408
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.11 E-value=60 Score=36.89 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=64.1
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCC-ccE----------EEEEecCCeEEEEECCCeEEEEECC--ceeEEeecC
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHK-LQV----------TGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAH 149 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~V----------~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~ 149 (760)
+.++.++.++.|+-.|..+|+.+..+.... ..+ ..+++.++.++.++.|+.+...|.. +.+......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~ 149 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNG 149 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence 358888889999999999999888765321 111 1134556788899999999988864 444433221
Q ss_pred --C--cCeEEEEEeCCCcEEEEEC------CCcEEEEeCCCceEEee
Q 004329 150 --N--APIQTVIRIPSGEIVSGSS------DTTIKLWKGKKCAQTFV 186 (760)
Q Consensus 150 --~--~~v~~v~~~~~~~l~tgs~------dg~i~iwd~~~~~~~~~ 186 (760)
. ..+.+--...++.+++++. +|.|.-+|..+......
T Consensus 150 ~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 1 1122211112566666543 67888888665554444
No 409
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=7.9 Score=46.87 Aligned_cols=134 Identities=12% Similarity=0.212 Sum_probs=87.2
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CC-------eEEEEECCCeEEEEE----CC-cee------E
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NE-------DIVSSSVDSTLKRWR----KG-KLV------E 144 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~-------~l~sgs~dg~v~vwd----~~-~~~------~ 144 (760)
+-.+-|+.+.+|+.+++.....+.+-+..|..+..- .+ +++..+.--.|.++- .. ... .
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 445678999999999987777777777777776552 11 244444444555551 11 111 2
Q ss_pred EeecCCcCeEEEEEeCCCcEEEEECCCcEEEE--e------CCCceE----------------Eee-cCCCceEEEEEeC
Q 004329 145 FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLW--K------GKKCAQ----------------TFV-GHTDTVRGLSVMP 199 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iw--d------~~~~~~----------------~~~-~h~~~V~~l~~~~ 199 (760)
.+......|.|+....+|+++.+|.||.++-. . .+++.+ .+. .+.++|..+.+..
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 22234567889998889999888888854422 1 111111 222 5678999999987
Q ss_pred CCe-EEEEeCCCeEEEEecCC
Q 004329 200 GVG-IISASHDCTIRLWALTG 219 (760)
Q Consensus 200 ~~~-l~s~s~dg~I~iwd~~~ 219 (760)
... +.+-+..|+|.+||+.+
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 555 88889999999999854
No 410
>PHA03098 kelch-like protein; Provisional
Probab=86.92 E-value=51 Score=37.54 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=28.8
Q ss_pred EEEEEeCC-----CeEEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECC------CeEEEEECCc
Q 004329 84 GLVSGGMD-----TMVLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD------STLKRWRKGK 141 (760)
Q Consensus 84 ~l~sgs~d-----g~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d------g~v~vwd~~~ 141 (760)
+++.||.+ ..+..||..+++.... +............++...+.|+.+ ..+..||...
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 46667755 3477888876643221 111111222223334445666632 3467777653
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.73 E-value=22 Score=38.73 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=83.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe-------cCCeEEEEECCCeEEEEECC---ceeEEee----cC
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL-------DNEDIVSSSVDSTLKRWRKG---KLVEFWE----AH 149 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~-------~~~~l~sgs~dg~v~vwd~~---~~~~~~~----~~ 149 (760)
++..|+....++-.|++.|+.+.....|...|..... .+..-+.|-.+..|.-.|.+ ..+.... ..
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 3556677778888999999999888877766433211 12334555555555555543 1111111 11
Q ss_pred CcCeEEEEEeCCCcEEEEECCCcEEEEe-CCCceE-EeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC
Q 004329 150 NAPIQTVIRIPSGEIVSGSSDTTIKLWK-GKKCAQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT 218 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l~tgs~dg~i~iwd-~~~~~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~ 218 (760)
.....+..-..+|.++++|..|.|++|| ++...+ .+.+....|..+....++..+.+.....+.+-|+.
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2334455555667788888888999988 333222 34456677888888887776666666777777753
No 412
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=86.40 E-value=4.3 Score=40.98 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCC
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKD 681 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~ 681 (760)
+..+++...+.+.....+|-+||+|+||-.......++....+.++.. +.+.+..+|.=+--+++|+|.--...+.
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G~~~~k~~vLk~L~nLS~np~~~~~ 170 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSGSEKTKVQVLKVLVNLSENPDMTRE 170 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence 344444444444455668999999999977777777766655555544 4445678888888899999864222110
Q ss_pred chhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 682 EEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 682 ~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
-...+.++..+.+.. ...+.|.+.|.|.-+.++-.
T Consensus 171 -Ll~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 171 -LLSAQVLSSFLSLFN-SSESKENLLRVLTFFENINE 205 (254)
T ss_pred -HHhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHH
Confidence 011123333333443 33467999999999999954
No 413
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.94 E-value=56 Score=35.40 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=146.6
Q ss_pred ccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 4 IDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
++..+.++...+.-+. ....+.+.+++. .++-.....+..-+.. .. . .......-...-..++.++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n---~-~~~~~~~g~~~p~~i~v~~~~~~-- 87 (381)
T COG3391 16 INTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN---T-VTQSLSVGGVYPAGVAVNPAGNK-- 87 (381)
T ss_pred EeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cc---e-eeeeccCCCccccceeeCCCCCe--
Confidence 3444455555555444 455677777774 3333333344444433 11 1 11111111133456777777764
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC---CCeEEEEECC--ceeEEeecCCcCeE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV---DSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~---dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
..++...++.|.+.|..+.+.......-. ....++++ ++.++.+.. ++++.+.|.. +..........+ .
T Consensus 88 --vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~ 163 (381)
T COG3391 88 --VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T 163 (381)
T ss_pred --EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence 35556667999999987777666654222 34455555 556555544 6788888764 344443333334 7
Q ss_pred EEEEeCCCc-E-EEEECCCcEEEEeCCCceEEe------ecCCCceEEEEEeCCCe--EEEEeCC--CeEEEEecCCceE
Q 004329 155 TVIRIPSGE-I-VSGSSDTTIKLWKGKKCAQTF------VGHTDTVRGLSVMPGVG--IISASHD--CTIRLWALTGQVL 222 (760)
Q Consensus 155 ~v~~~~~~~-l-~tgs~dg~i~iwd~~~~~~~~------~~h~~~V~~l~~~~~~~--l~s~s~d--g~I~iwd~~~~~~ 222 (760)
.+++.|+|. + ++-..++.+.++|........ ..-......+.+.|++. +++...+ +.+...|.....+
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 899999988 3 344578999999955432221 12223456788888766 3333333 5788888655544
Q ss_pred EEe-ecCCC-cEEEEEEeCCC-eEEEE-eCCCcEEEEe--CCceEEEEec----CCcEEEEEEccCC
Q 004329 223 MEM-VGHTA-IVYSIDSHASG-LIVSG-SEDRFAKIWK--DGVCVQSIEH----PGCVWDAKFLENG 279 (760)
Q Consensus 223 ~~~-~~h~~-~v~~v~~~p~~-~l~s~-s~Dg~I~iwd--~~~~~~~~~~----~~~v~~v~~~~~g 279 (760)
... ..-.. ....+..+|+| .+.+. +..+.+.+-| .......+.- ...+..+++.+..
T Consensus 244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 244 TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 443 11112 56678899999 44444 4457888888 3344444431 1236666665544
No 414
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=84.90 E-value=2 Score=37.31 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=60.6
Q ss_pred cchHHHHHHHHhhcCCC-CccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~-~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
+..+--+++++.|+... +.....+.. ..+++.+...+...+..++..++.++.|++.........-....++..+.+
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 45577899999999887 455554443 245555555555567889999999999997542111111111224555556
Q ss_pred HhhccccchhHHHHHHHHHhhhc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLM 717 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~ 717 (760)
.+.. .+.++.-..+.+|++|.
T Consensus 99 ~l~~--~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 99 LLDS--SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHhc--CCHHHHHHHHHHHHHhh
Confidence 6642 35677777777777664
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.67 E-value=95 Score=36.97 Aligned_cols=279 Identities=13% Similarity=0.070 Sum_probs=144.8
Q ss_pred CCEEEEEEcCC---C--eEEEEE---CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEE--EeCCCCCCCCcEEEEEe
Q 004329 20 DDVRGICVCDN---V--GIATSS---RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLA--WISPNEEFPEGGLVSGG 89 (760)
Q Consensus 20 ~~V~~v~~~~~---~--~l~tgs---~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~~~~~l~sgs 89 (760)
++|..++.-.. + +++||+ .||++|+....-+- ...-...+.| ...++.+. +.+.-+ .+++.+-
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I--~e~A~i~l~G-ikg~w~lk~~v~~~~d----~ylvlsf 426 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI--DELASIDLPG-IKGMWSLKSMVDENYD----NYLVLSF 426 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc--ceeeEeecCC-ccceeEeeccccccCC----cEEEEEe
Confidence 47888776532 2 388886 58999998753211 1112223344 55677777 433333 2455554
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCcEEE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVS 166 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~l~t 166 (760)
.+ .-++..+...-......+.......+..+ ++.++= -....||+++.......|....+.....+.....+++.
T Consensus 427 ~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQ-vTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvv 504 (1096)
T KOG1897|consen 427 IS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQ-VTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVV 504 (1096)
T ss_pred cc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEE-EecccEEEEcchhhhhcccCCCceEEEEEeecceEEEE
Confidence 43 34445543221111122222333333332 333222 23345777766655566665554444444444445777
Q ss_pred EECCCcEEEEeCCCc-eEEe--ecCCCceEEEEEeC----CC---eEEEEeCCCeEEEEec--CCceEEEe-ecC---CC
Q 004329 167 GSSDTTIKLWKGKKC-AQTF--VGHTDTVRGLSVMP----GV---GIISASHDCTIRLWAL--TGQVLMEM-VGH---TA 230 (760)
Q Consensus 167 gs~dg~i~iwd~~~~-~~~~--~~h~~~V~~l~~~~----~~---~l~s~s~dg~I~iwd~--~~~~~~~~-~~h---~~ 230 (760)
++.++.+...+.... .+.. ......|.|+.++| .+ .++.|..+..+.+.-. +...+... .+- +.
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 777776666653322 2222 22456788999987 22 3777877776665542 22222111 111 22
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe----CCceEEEEe---cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd----~~~~~~~~~---~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.|.-..+-.+. +|.++..||.+.-+- ++.....-+ ...++.=-.|+..+. -+.+++|.-..+|..+..-..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 33334444545 899999999987764 222211111 223555556666655 666777777777776655555
Q ss_pred chhhhh
Q 004329 302 DSLELE 307 (760)
Q Consensus 302 ~~~~~~ 307 (760)
..+..+
T Consensus 665 spls~k 670 (1096)
T KOG1897|consen 665 SPLSLK 670 (1096)
T ss_pred eccchH
Confidence 544433
No 416
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.64 E-value=61 Score=34.69 Aligned_cols=195 Identities=14% Similarity=0.150 Sum_probs=80.8
Q ss_pred ccccCCCceEeEEeccCC-CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHE-DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~-~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
+..|+.+.+..+ |..+. .......++++++ ++-...+..++--|+.+.+ ....+......+-...|..+...
T Consensus 63 y~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-----~~~vy~~p~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 63 YLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-----ERVVYEVPDDWKGYGTWVANSDC 136 (386)
T ss_dssp EEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-------EEEEEE--TTEEEEEEEEE-TTS
T ss_pred EEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-----EEEEEECCcccccccceeeCCCc
Confidence 345666665544 33322 2222445566666 6556566788888888655 33444445666666666544321
Q ss_pred CCCcEEEEEeC-----------------------CCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEE---EC
Q 004329 80 FPEGGLVSGGM-----------------------DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSS---SV 130 (760)
Q Consensus 80 ~~~~~l~sgs~-----------------------dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sg---s~ 130 (760)
..+.|.. .+.|.--|+.+|+....+. ....+..+.++ ++.+.-| -+
T Consensus 137 ----t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw 211 (386)
T PF14583_consen 137 ----TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPW 211 (386)
T ss_dssp ----SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-T
T ss_pred ----cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCc
Confidence 1333321 1235555666666544433 33344455555 2334443 24
Q ss_pred CCe-EEEE--ECC-ceeEEeecC--CcCeEEEEEeCCCc-EE--EEEC---CCcEEEEeCCCceEEeecCCCceEEEEEe
Q 004329 131 DST-LKRW--RKG-KLVEFWEAH--NAPIQTVIRIPSGE-IV--SGSS---DTTIKLWKGKKCAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 131 dg~-v~vw--d~~-~~~~~~~~~--~~~v~~v~~~~~~~-l~--tgs~---dg~i~iwd~~~~~~~~~~h~~~V~~l~~~ 198 (760)
+.. -|+| +.. .....+..+ ...+..--|.++|. +. .... +..|.-+|..+..............+-.+
T Consensus 212 ~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss 291 (386)
T PF14583_consen 212 DLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSS 291 (386)
T ss_dssp TTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-
T ss_pred ceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEc
Confidence 442 4777 332 222222222 23344556788887 22 2222 23455556554333222222233344445
Q ss_pred CCCeEEEEe
Q 004329 199 PGVGIISAS 207 (760)
Q Consensus 199 ~~~~l~s~s 207 (760)
+++.+++|.
T Consensus 292 ~Dg~L~vGD 300 (386)
T PF14583_consen 292 PDGKLFVGD 300 (386)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEec
Confidence 677766664
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.57 E-value=8.9 Score=37.85 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=24.7
Q ss_pred ccEEEEEecCCeEEEEECCCeEEEEECCceeEE
Q 004329 113 LQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEF 145 (760)
Q Consensus 113 ~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~ 145 (760)
.++..+..+++++++.+.+|.+++||+.+....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 355566777888999999999999998754443
No 418
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.37 E-value=6.3 Score=44.38 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=43.3
Q ss_pred ceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEE
Q 004329 191 TVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSI 264 (760)
Q Consensus 191 ~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~ 264 (760)
.++++.-+|++. +++++.||.|++|+...+....+.....+-..+.|...| +++...|+.+.-|. .|...+.+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg-l~~~tsdrr~la~~~dgvvqqqf 90 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG-LVTATSDRRALAWKEDGVVQQQF 90 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc-eEEEeccchhheeeccCcchhhc
Confidence 456667677666 888888888888886444333333333344445555444 55666677777776 44444444
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.13 E-value=47 Score=36.27 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=75.1
Q ss_pred EEECCCcEEEEeC--CCceEEeecCCCceEEEEEeCC--------CeEEEEeCCCeEEEEe--cCCceEEEee----cCC
Q 004329 166 SGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPG--------VGIISASHDCTIRLWA--LTGQVLMEMV----GHT 229 (760)
Q Consensus 166 tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~--------~~l~s~s~dg~I~iwd--~~~~~~~~~~----~h~ 229 (760)
.|.....++-.|+ ++.+..+..|.+. -+.+.|. ..-+.|-.+..|.-.| ++|..+.... ...
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4555555555553 3445566666554 4556662 2233444444444445 3454333222 112
Q ss_pred CcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEE-EEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 230 AIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ-SIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 230 ~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~-~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
....|..-..+|+++++|..|-||+|| -+.... .+. ....|..+..+.+|+.+.+.....+.+-|+.
T Consensus 563 n~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 333444455667999999999999999 332222 222 4458888999999996555556677777764
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.00 E-value=71 Score=34.20 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=45.5
Q ss_pred cCCCceEeEEeccCCCCEEEE-----EEcCCCe--EEEEECCCeEEEE--eCCCCCCccceeeeEeeCCC-CCeEEEEEe
Q 004329 5 DFKEYQLSSELRGHEDDVRGI-----CVCDNVG--IATSSRDRTVRFW--SLDPSDKRKYHSSKILLGHT-SFVGPLAWI 74 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~V~~v-----~~~~~~~--l~tgs~Dg~i~iW--d~~~~~~~~~~~~~~~~~h~-~~V~~l~~~ 74 (760)
|..++..+.+|..+...-..+ +|.++|+ |.++..||.-.+| |+.+++ ...+..+. .......++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~------i~QLTdg~g~~~~g~~~s 89 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE------ITQLTDGPGDNTFGGFLS 89 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E------EEE---SS-B-TTT-EE-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE------EEECccCCCCCccceEEe
Confidence 455566666666544433334 5667886 5666667765555 555443 22332221 112234556
Q ss_pred CCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe
Q 004329 75 SPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL 120 (760)
Q Consensus 75 ~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 120 (760)
+++. .++-...+..++-.|+++.+....+.....-+-...|
T Consensus 90 ~~~~-----~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 90 PDDR-----ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp TTSS-----EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred cCCC-----eEEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence 7765 3444455578888999998765555555544433333
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.93 E-value=1.1e+02 Score=36.39 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCcc--------EEEEEe------------------cCCeEEEEECCCeEE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQ--------VTGVTL------------------DNEDIVSSSVDSTLK 135 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~--------V~~l~~------------------~~~~l~sgs~dg~v~ 135 (760)
++.++.++.++.|.-.|..+|+.+.++..+... ...+.+ ++++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 346888999999999999999998887532211 111222 234788888899888
Q ss_pred EEECC
Q 004329 136 RWRKG 140 (760)
Q Consensus 136 vwd~~ 140 (760)
-.|..
T Consensus 274 ALDA~ 278 (764)
T TIGR03074 274 ALDAD 278 (764)
T ss_pred EEECC
Confidence 88753
No 422
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.89 E-value=75 Score=34.40 Aligned_cols=232 Identities=15% Similarity=0.156 Sum_probs=130.6
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCe-EEEEECCCeEEEEECC--c
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NED-IVSSSVDSTLKRWRKG--K 141 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~--~ 141 (760)
....+.+.+.+.+. +++....+ .+...+................-..+..+ ++. .+....++.|.+.|.. .
T Consensus 32 ~~~~v~~~~~g~~~---~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQV---YVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEE---EEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence 45566677777532 23333333 55555544211111111111223344443 443 5555567889999854 2
Q ss_pred eeEEeecCCcCeEEEEEeCCCc-EE-EEE--CCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEE
Q 004329 142 LVEFWEAHNAPIQTVIRIPSGE-IV-SGS--SDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIR 213 (760)
Q Consensus 142 ~~~~~~~~~~~v~~v~~~~~~~-l~-tgs--~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~ 213 (760)
....... ......+.+.+++. +. +-+ .++++.+.|... .......-..+ ..+++.|++. +++-..++.|.
T Consensus 108 ~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 108 VLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 2222221 12556788999886 43 444 368888888543 33332222234 8899999776 33444789999
Q ss_pred EEecCCceEEE-----eecCCCcEEEEEEeCCC-eEEEEe-CC--CcEEEEe--CCceEEE-EecCC-cEEEEEEccCCc
Q 004329 214 LWALTGQVLME-----MVGHTAIVYSIDSHASG-LIVSGS-ED--RFAKIWK--DGVCVQS-IEHPG-CVWDAKFLENGD 280 (760)
Q Consensus 214 iwd~~~~~~~~-----~~~h~~~v~~v~~~p~~-~l~s~s-~D--g~I~iwd--~~~~~~~-~~~~~-~v~~v~~~~~g~ 280 (760)
+.|.++..+.. ...-......+.+.|+| .+.... .+ +.+...| .+..... ..... ....+...|+|.
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred EEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence 99987766654 12223445678889998 333333 22 5888888 3333333 22222 467789999999
Q ss_pred -EEEE-EcCCcEEEEeCCCCeeechh
Q 004329 281 -IVTA-CSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 281 -lvt~-~~dg~I~vw~~~~~~~~~~~ 304 (760)
+.+. +..+.+.+-|..+.+.....
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeee
Confidence 3333 34588888888887766543
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=28 Score=37.43 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=81.2
Q ss_pred EEEEec-CCeEEEEECCCeEEEEEC-----CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--C----ce
Q 004329 116 TGVTLD-NEDIVSSSVDSTLKRWRK-----GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--K----CA 182 (760)
Q Consensus 116 ~~l~~~-~~~l~sgs~dg~v~vwd~-----~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~----~~ 182 (760)
+.+-|+ .+..+.+...|.+.-|-. .-++..-....++|.++.|++|++ +++--.++.|.+++.. + ..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 345565 344555555566666633 233333345567999999999999 5667788999999742 1 12
Q ss_pred EEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEe--cCCceEEEeecCCCcEEEEEEeCCC
Q 004329 183 QTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWA--LTGQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 183 ~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd--~~~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
++.+..+..|.+.+|.....++..++.| +-+|. ...+.++..+.|...|.--.|.++.
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 2333445668999998766677666655 45554 3445566667788888888888887
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.32 E-value=30 Score=40.10 Aligned_cols=103 Identities=6% Similarity=0.057 Sum_probs=62.8
Q ss_pred cEEEEEec----CCeEEEEECCCeEEEEECCc----------------------eeEEeecCCcCeEEEEEe--CCCcE-
Q 004329 114 QVTGVTLD----NEDIVSSSVDSTLKRWRKGK----------------------LVEFWEAHNAPIQTVIRI--PSGEI- 164 (760)
Q Consensus 114 ~V~~l~~~----~~~l~sgs~dg~v~vwd~~~----------------------~~~~~~~~~~~v~~v~~~--~~~~l- 164 (760)
.|.-|... ...|+.|..||.|.+|.+.. +...+ .-...+|+++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 35555443 23388999999999995320 01111 124578999988 55554
Q ss_pred EEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEeCCC-------eEEEEeCCCeEEEEec
Q 004329 165 VSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVMPGV-------GIISASHDCTIRLWAL 217 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~~~~-------~l~s~s~dg~I~iwd~ 217 (760)
++++....|.+|-... ....-..|...|-+|+|.++. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4555566677774211 111111366678888887722 3777888898888876
No 425
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.26 E-value=1.2e+02 Score=36.20 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=47.0
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCC----CCeEEEEEeCCC-----------CCCCCcEEEEEeCCCeE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT----SFVGPLAWISPN-----------EEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~----~~V~~l~~~~~~-----------~~~~~~~l~sgs~dg~I 94 (760)
++.+..++.++.|.-.|..+++.. +.......... .....+.+.... .....+.++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 566888888899998898877631 11110000000 012233443210 00112368899999999
Q ss_pred EEEECCCCceEEEEe
Q 004329 95 LVWDLGSGEKVQTLQ 109 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~ 109 (760)
.-.|.++|+.+..+.
T Consensus 273 iALDA~TGk~~W~fg 287 (764)
T TIGR03074 273 IALDADTGKLCEDFG 287 (764)
T ss_pred EEEECCCCCEEEEec
Confidence 999999999887764
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.00 E-value=6.3 Score=38.91 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=53.9
Q ss_pred EecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh-hhhhhhhcccceEEeccccCceeeecCCCCceeeccC
Q 004329 264 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPG 341 (760)
Q Consensus 264 ~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g 341 (760)
+....++..+. .++. +++.+.+|.+++||+.+++..... .+.... ..... . +. .+...+....-
T Consensus 9 i~Lgs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll---~~~~~-~---~~-----~~~~~i~~~~l 74 (219)
T PF07569_consen 9 IVLGSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLL---NSSPV-S---DK-----SSSPNITSCSL 74 (219)
T ss_pred EecCCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHh---ccccc-c---cC-----CCCCcEEEEEE
Confidence 33444444444 3445 889999999999999998875433 111111 10000 0 00 22222333333
Q ss_pred CCcceEEEEeeCCceEEEEEeccccceeeccc
Q 004329 342 TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGE 373 (760)
Q Consensus 342 ~~~g~~~~v~~~~~~~~~~w~~~~~~W~~~g~ 373 (760)
++.|...+..++ +.+|.|+..-+.|.++.+
T Consensus 75 t~~G~PiV~lsn--g~~y~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 75 TSNGVPIVTLSN--GDSYSYSPDLGCWIRVSD 104 (219)
T ss_pred cCCCCEEEEEeC--CCEEEeccccceeEEecc
Confidence 356766666554 357999999999998765
No 427
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=81.77 E-value=4.5 Score=44.75 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=49.1
Q ss_pred hhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhh--------cCCCCCcchHHHHHHHHhhc-CCCCccHHHHHh--h
Q 004329 574 VIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKV--------SSNPTLPANLLTGIRAVTNL-FKNSSWYSWLQK--N 642 (760)
Q Consensus 574 ~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~ml~lR~l~N~-f~~~~~~~~~~~--~ 642 (760)
+|..+|+..++|...+-+. . .+.+..++..+ ......+...+-|||+|||+ |.++..|+.+.. .
T Consensus 1 ~L~~LRiLsRd~~~~~~l~--~---~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~ 75 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLF--T---EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGL 75 (446)
T ss_pred CHHHHHHHccCcccchhhc--c---HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCc
Confidence 3678999999999877664 1 34466666665 12233456689999999999 566666765543 2
Q ss_pred HHHHHHHhhhc
Q 004329 643 RSEILDAFSSC 653 (760)
Q Consensus 643 ~~~i~~~~~~~ 653 (760)
...+++.+...
T Consensus 76 ~~~l~~~Lk~~ 86 (446)
T PF10165_consen 76 AEKLCERLKNY 86 (446)
T ss_pred HHHHHHHHHcc
Confidence 44555555443
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.50 E-value=56 Score=35.16 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=51.6
Q ss_pred CcCeEEEEEeCCCcEEEEECCCcEEEEeCC-------CceEEeec-------CCCceEEEEEeCCCeEEEEeCC------
Q 004329 150 NAPIQTVIRIPSGEIVSGSSDTTIKLWKGK-------KCAQTFVG-------HTDTVRGLSVMPGVGIISASHD------ 209 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~-------~~~~~~~~-------h~~~V~~l~~~~~~~l~s~s~d------ 209 (760)
......+++.+++ +++++.....++.|.. +....+.+ +......+.+.|++.|..+..+
T Consensus 71 l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 3345778888888 6666555444444432 11111221 1344778999998874432221
Q ss_pred --------------CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEE
Q 004329 210 --------------CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 210 --------------g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s 245 (760)
|.|.-++..+.....+...-.....++|+++| ++++
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 34555555555444443333445678888888 4443
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=9 Score=45.59 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=86.7
Q ss_pred EEEEEEcCCCe---EEEEECCCeEEEEeCCCCCCccceeee------EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 22 VRGICVCDNVG---IATSSRDRTVRFWSLDPSDKRKYHSSK------ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 22 V~~v~~~~~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~------~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
+..+...+|+. ++..+.+-.|..||+.+-....+.... ..........++.|.|.-.. ..+.+..|+
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~----n~av~l~dl 178 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL----NSAVDLSDL 178 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc----hhhhhcccc
Confidence 33444445554 444455568899998743322222222 22233456778899887653 367888899
Q ss_pred eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCce-eEEeec----CCcCeEEEEEeCCCcEE
Q 004329 93 MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKL-VEFWEA----HNAPIQTVIRIPSGEIV 165 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~-~~~~~~----~~~~v~~v~~~~~~~l~ 165 (760)
.|++..+........--.....++|++|+ +.+++.|-..|++.-|...-. ...+.+ ....|.+++|.....++
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 99988775332221112245678899998 667999999999998865422 122211 24678999998776644
Q ss_pred E
Q 004329 166 S 166 (760)
Q Consensus 166 t 166 (760)
+
T Consensus 259 v 259 (1405)
T KOG3630|consen 259 V 259 (1405)
T ss_pred E
Confidence 3
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.80 E-value=39 Score=39.71 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.0
Q ss_pred EEEEeCCCeEEEEECCCCc
Q 004329 85 LVSGGMDTMVLVWDLGSGE 103 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~ 103 (760)
=+....|+.+.+||-....
T Consensus 35 NLl~~~d~~L~vWd~~e~~ 53 (717)
T PF10168_consen 35 NLLACRDGDLFVWDSSECC 53 (717)
T ss_pred eeEEEeCCEEEEEECCCCE
Confidence 5888899999999976543
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=39 Score=40.19 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=42.4
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceee----eEe--eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSS----KIL--LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE 103 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~----~~~--~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~ 103 (760)
++.+..|++||.+.+|.+........... ..+ .-++.+|+.+...+.-. ++-...|+.|.++++.+.+
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~------~ll~l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLE------LLLILSDSQIAVHKLPELE 99 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhc------chheecCCcceeeecCccc
Confidence 34499999999999999875432111111 001 11256677776666554 4555667888888886655
Q ss_pred e
Q 004329 104 K 104 (760)
Q Consensus 104 ~ 104 (760)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
No 432
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.73 E-value=1.1e+02 Score=34.57 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=71.1
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchh-hhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEG-QSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~-~~~ll~~~~ 693 (760)
.+..+.++++.+.|+..+..+...++.. ..++..+..++..++-.+.-+++.++-+++-.-. ..+.. ...++..+.
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~ 166 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLK 166 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHH
Confidence 4566899999999999888774433332 3566666677777788888899999999875311 11000 001123333
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccC
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFD 730 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~ 730 (760)
.++. ..++...+|.+-.+..+.. +++..+.+..-+
T Consensus 167 ~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 167 SLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 3343 2356899999999999976 666666665433
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.73 E-value=38 Score=39.86 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC-CCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCcee
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG-SGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLV 143 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~-~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~ 143 (760)
-.|..|..++++. +++..|..|. .|-.+. ..-....+.+....+.|=.+. +..++.
T Consensus 85 f~v~~i~~n~~g~-----~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~---------------- 142 (717)
T PF10168_consen 85 FEVHQISLNPTGS-----LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT---------------- 142 (717)
T ss_pred eeEEEEEECCCCC-----EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhcc----------------
Confidence 4577888888887 4666666554 333332 111112233333344433332 222221
Q ss_pred EEeecCCcCeEEEEEeCCC----cEEEEECCCcEEEEeCCC
Q 004329 144 EFWEAHNAPIQTVIRIPSG----EIVSGSSDTTIKLWKGKK 180 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~~----~l~tgs~dg~i~iwd~~~ 180 (760)
..+...|..+.|+|.+ .++.-..|+++|+||...
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1234567789999864 388899999999999654
No 434
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=77.69 E-value=6.1 Score=42.37 Aligned_cols=86 Identities=3% Similarity=-0.028 Sum_probs=45.8
Q ss_pred CCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEecC-------------------
Q 004329 209 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP------------------- 267 (760)
Q Consensus 209 dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~------------------- 267 (760)
.+.+.+||+.......+......+....|+|+| .++.. .++.|.+++ .......+.+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 356777777766666655445667777888888 44444 356677776 22233333221
Q ss_pred CcEEEEEEccCCc-EEE-EEcCCcEEEEeC
Q 004329 268 GCVWDAKFLENGD-IVT-ACSDGVTRIWTV 295 (760)
Q Consensus 268 ~~v~~v~~~~~g~-lvt-~~~dg~I~vw~~ 295 (760)
+.-..+-|||||+ |+. --.+..|+.+.+
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1235577888888 433 333555555443
No 435
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=77.31 E-value=30 Score=37.65 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=59.0
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCeEEEE-ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE-EEEeCCCC--------
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVGIATS-SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP-LAWISPNE-------- 78 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~l~tg-s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~-------- 78 (760)
......|......+.+++.+|.+.++.. ..=|.|.++|+.++. ..+..+|..+.=.. +.......
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-----vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-----VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-----hhhhhccCccceEEEEEeecccccccccccc
Confidence 4456677777788999999999985444 445899999998664 33344443322111 00000000
Q ss_pred -----CCCCcEEEEEeCCCeEEEEECCCCceEEEEeC
Q 004329 79 -----EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG 110 (760)
Q Consensus 79 -----~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~ 110 (760)
.....+++-.-.-|.|.||++++|..+..+..
T Consensus 372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 00011345566789999999998887776653
No 436
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.18 E-value=15 Score=31.69 Aligned_cols=101 Identities=20% Similarity=0.052 Sum_probs=54.5
Q ss_pred HhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcchh-HHHHHhh
Q 004329 649 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEG-LVKKIAL 727 (760)
Q Consensus 649 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~~~-~~~~~~~ 727 (760)
.+.+.+...+..++..+...+-|++...-.....-.....+..+.+.+.. .+++.....+.||++|...+ +......
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 33444444566788888888999886521111110111344445555543 47899999999999999833 4444333
Q ss_pred ccChHHHHHHHhhcCChhHHHHHH
Q 004329 728 DFDVGNIARVAKASKETKIAEVGA 751 (760)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~ 751 (760)
..++-..+-+.-...+.++++.+-
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHH
Confidence 333323332232233344444443
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.00 E-value=66 Score=34.73 Aligned_cols=151 Identities=11% Similarity=0.062 Sum_probs=95.9
Q ss_pred cCCCceEeEEeccCCCC------EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 5 DFKEYQLSSELRGHEDD------VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 5 d~~~~~l~~~l~gH~~~------V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
+..++.+..++..|... -+.+-|.+.++.+-+.+.|.+.=|-..... .-.+...-....++|.++.|++|.+
T Consensus 2 gvgsGalyhelihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpn--dDVpiSfdm~d~G~I~SIkFSlDnk 79 (657)
T KOG2377|consen 2 GVGSGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPN--DDVPISFDMDDKGEIKSIKFSLDNK 79 (657)
T ss_pred CCCCcceEEEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCC--CCCCceeeecCCCceeEEEeccCcc
Confidence 34456677777777543 233445444555555556677777765322 1223333344577999999999998
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceE----EEEeCCCccEEEEEecCCe-EEEEECCCeEEEEEC---CceeEEeecCC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKV----QTLQGHKLQVTGVTLDNED-IVSSSVDSTLKRWRK---GKLVEFWEAHN 150 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~----~~l~~h~~~V~~l~~~~~~-l~sgs~dg~v~vwd~---~~~~~~~~~~~ 150 (760)
.++.--.+++|.+++....+.. .+.+..+..|..++|.++. ++..+..| +-+|.. ...++..+.|.
T Consensus 80 -----ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 80 -----ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred -----eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcc
Confidence 6888899999999998443322 2233445668888997444 65555544 445532 24455667788
Q ss_pred cCeEEEEEeCCCc
Q 004329 151 APIQTVIRIPSGE 163 (760)
Q Consensus 151 ~~v~~v~~~~~~~ 163 (760)
..|.-..|.++..
T Consensus 154 ~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 154 LNVNWYMYCPETA 166 (657)
T ss_pred cCccEEEEccccc
Confidence 8888888888877
No 438
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.98 E-value=1.8e+02 Score=35.97 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCee
Q 004329 228 HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 228 h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~ 300 (760)
+...+.+..+....-...+..-+.+-+|+ ........-+.. ...+++++. ++++-.||.+.+||.+.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN---GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc---cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 44555555554444455556666677776 332222221111 111167777 88888899999999999866
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.20 E-value=48 Score=36.35 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=50.3
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEE-----e------CCceE---EEE-------e-cCC-cEEEEEEccCC--c--EE
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIW-----K------DGVCV---QSI-------E-HPG-CVWDAKFLENG--D--IV 282 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iw-----d------~~~~~---~~~-------~-~~~-~v~~v~~~~~g--~--lv 282 (760)
.|+.+..++.| .++-.|.+|.+.++ - +++.. +++ . .+. .+..++|+|+. + ++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 56778888888 77778888866553 1 23111 111 1 122 67889999987 3 88
Q ss_pred EEEcCCcEEEEeCCCCeeec
Q 004329 283 TACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 283 t~~~dg~I~vw~~~~~~~~~ 302 (760)
.-++|..||+|+....+.++
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999999877664
No 440
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.19 E-value=1e+02 Score=31.40 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccccCCCceEeEEeccCCCCEEEE--EEcCCCeEEEEECC------CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGI--CVCDNVGIATSSRD------RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v--~~~~~~~l~tgs~D------g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~ 73 (760)
|++|....+...++..-++.-.-= +|++||.++-++.+ |.|-|||...+ +...-.+..|.-.-..+.|
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~----fqrvgE~~t~GiGpHev~l 169 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG----FQRVGEFSTHGIGPHEVTL 169 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc----cceecccccCCcCcceeEE
Q ss_pred eCCCCCCCCcEEEEEeCCC-------------------eEEEEECCCCceEEE--Ee--CCCccEEEEEec-CCeEEEEE
Q 004329 74 ISPNEEFPEGGLVSGGMDT-------------------MVLVWDLGSGEKVQT--LQ--GHKLQVTGVTLD-NEDIVSSS 129 (760)
Q Consensus 74 ~~~~~~~~~~~l~sgs~dg-------------------~I~vwd~~~~~~~~~--l~--~h~~~V~~l~~~-~~~l~sgs 129 (760)
.+|+. .+.+-..| ++.+.|..+|+.+.+ +. .+...+..++.. ++.+..|+
T Consensus 170 m~DGr------tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 170 MADGR------TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ecCCc------EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Q ss_pred CCCe--------EEEEECCceeEEeecC-------CcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceEEeecCCCce
Q 004329 130 VDST--------LKRWRKGKLVEFWEAH-------NAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQTFVGHTDTV 192 (760)
Q Consensus 130 ~dg~--------v~vwd~~~~~~~~~~~-------~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~~~~~h~~~V 192 (760)
.-.- |-....++.+..+... ..-|-+++.+.+.. .+|.-..+...+||..+........-..+
T Consensus 244 Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~da 323 (366)
T COG3490 244 QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDA 323 (366)
T ss_pred EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccc
Q ss_pred EEEEEeCCCeEEEEeCCCeEEEEe
Q 004329 193 RGLSVMPGVGIISASHDCTIRLWA 216 (760)
Q Consensus 193 ~~l~~~~~~~l~s~s~dg~I~iwd 216 (760)
..++...++ |+..+.+|.+..++
T Consensus 324 aGva~~~~g-f~vssg~G~~~~~s 346 (366)
T COG3490 324 AGVAAAKGG-FAVSSGQGRIIFYS 346 (366)
T ss_pred ccceeccCc-eEEecCCceEEecc
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=74.67 E-value=16 Score=25.36 Aligned_cols=34 Identities=15% Similarity=-0.052 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
+.|.++.|+|... ...+|+..-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~--~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPG--GNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCC--cccEEEEEccCCeEEEEEccc
Confidence 4689999997654 123688888889999999985
No 442
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.60 E-value=1.4e+02 Score=32.68 Aligned_cols=210 Identities=10% Similarity=0.120 Sum_probs=107.2
Q ss_pred EEEEEEcCCCe-EE-EEECCC----eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC----
Q 004329 22 VRGICVCDNVG-IA-TSSRDR----TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD---- 91 (760)
Q Consensus 22 V~~v~~~~~~~-l~-tgs~Dg----~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d---- 91 (760)
+...+++|+++ +| +-+..| +++++|+.+++. ....+... .-..+.|.+++.. ++++...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~----l~d~i~~~--~~~~~~W~~d~~~----~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF----LPDGIENP--KFSSVSWSDDGKG----FFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE----EEEEEEEE--ESEEEEECTTSSE----EEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC----cCCccccc--ccceEEEeCCCCE----EEEEEeCccccc
Confidence 33568889998 44 445555 599999997741 11122211 1123999999873 34554332
Q ss_pred ------CeEEEEECCCCce--EEEEeCCCcc--EEEEEec--CCeEEE-EECCCe---EEEEECCc------eeEEeecC
Q 004329 92 ------TMVLVWDLGSGEK--VQTLQGHKLQ--VTGVTLD--NEDIVS-SSVDST---LKRWRKGK------LVEFWEAH 149 (760)
Q Consensus 92 ------g~I~vwd~~~~~~--~~~l~~h~~~--V~~l~~~--~~~l~s-gs~dg~---v~vwd~~~------~~~~~~~~ 149 (760)
..|+.|.+.+... ...+...... ...+..+ +++++. ...... +.+.+... ....+..+
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 2478888877643 2444443333 4455554 455443 333333 45556643 33444444
Q ss_pred CcCeEEEEEeCCCcEEEEE----CCCcEEEEeCCCce-----EEeecCCC--ceEEEEEeCCCeEEEEeCCCe--EEEEe
Q 004329 150 NAPIQTVIRIPSGEIVSGS----SDTTIKLWKGKKCA-----QTFVGHTD--TVRGLSVMPGVGIISASHDCT--IRLWA 216 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l~tgs----~dg~i~iwd~~~~~-----~~~~~h~~--~V~~l~~~~~~~l~s~s~dg~--I~iwd 216 (760)
...+....-+.++.+..-+ ..+.|...+..... ..+..|.. .+..+....+..++....++. |++++
T Consensus 276 ~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 276 EDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 4444443333355443322 23455555655432 24555555 466666654444666666654 78888
Q ss_pred cC-CceEEEeecCC-CcEEEEEEeCCC
Q 004329 217 LT-GQVLMEMVGHT-AIVYSIDSHASG 241 (760)
Q Consensus 217 ~~-~~~~~~~~~h~-~~v~~v~~~p~~ 241 (760)
+. +.......... +.|..+...+++
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~ 382 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDS 382 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCC
Confidence 88 77666655433 345555544544
No 443
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.14 E-value=1.4e+02 Score=36.83 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=20.5
Q ss_pred eccCCCCEEEEEEcC--CC-e-----EEEEECCCeEEEEeCC
Q 004329 15 LRGHEDDVRGICVCD--NV-G-----IATSSRDRTVRFWSLD 48 (760)
Q Consensus 15 l~gH~~~V~~v~~~~--~~-~-----l~tgs~Dg~i~iWd~~ 48 (760)
..||..+|.|....- ++ + -+..+-||++.|=|.+
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 357888887775541 11 1 2345678888876654
No 444
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=90 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCe-EEEEECC--CeEEEEeCCCCCCccceeeeEeeC---CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc
Q 004329 30 NVG-IATSSRD--RTVRFWSLDPSDKRKYHSSKILLG---HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE 103 (760)
Q Consensus 30 ~~~-l~tgs~D--g~i~iWd~~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~ 103 (760)
+|. +.+.+.- ..|++||+.+++... ...+.. ....++.+ ++ .+....-.+|.-..+|..+-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~---s~~l~~~~~FgEGit~~-----gd----~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIF---SEKLAPDTVFGEGITKL-----GD----YFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEE---EeecCCccccccceeec-----cc----eEEEEEeccceeEEEChHHhh
Confidence 345 5665543 479999999776211 111110 11111111 11 123444567888889988887
Q ss_pred eEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC
Q 004329 104 KVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 104 ~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~ 139 (760)
++..+. ..+.-+.++.++..++.++...+++.-|.
T Consensus 123 ~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP 157 (262)
T COG3823 123 ELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDP 157 (262)
T ss_pred hhcccc-cCCcceeeecCCcceEeeCCceEEEecCH
Confidence 776665 44566788888777888877777776664
No 445
>PHA03098 kelch-like protein; Provisional
Probab=73.10 E-value=1e+02 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.4
Q ss_pred eEEEEEeccccceeeccc
Q 004329 356 GVAYSWDMKEQKWDKLGE 373 (760)
Q Consensus 356 ~~~~~w~~~~~~W~~~g~ 373 (760)
..++.+|...+.|..++.
T Consensus 503 ~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 503 NEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ceeEEEeCCCCEEEecCC
Confidence 457888988999987765
No 446
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=72.92 E-value=1.1e+02 Score=30.89 Aligned_cols=134 Identities=11% Similarity=0.066 Sum_probs=75.8
Q ss_pred CeEEEEEeCCCc-EEEEE---CCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEE-eCCCeEEEEe--cCCceE-E
Q 004329 152 PIQTVIRIPSGE-IVSGS---SDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISA-SHDCTIRLWA--LTGQVL-M 223 (760)
Q Consensus 152 ~v~~v~~~~~~~-l~tgs---~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~-s~dg~I~iwd--~~~~~~-~ 223 (760)
.+.+.++++++. ++... ....++++..+....... ....+..-.|.+++.+.+. ..+...+++. ..+... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 677889999987 43333 334566665554444332 2236777788888775544 4455556653 233222 1
Q ss_pred Eeec--CCCcEEEEEEeCCC-eEEEE---eCCCcEEEEe-----CCceE---EEEe----cCCcEEEEEEccCCcEEEEE
Q 004329 224 EMVG--HTAIVYSIDSHASG-LIVSG---SEDRFAKIWK-----DGVCV---QSIE----HPGCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 224 ~~~~--h~~~v~~v~~~p~~-~l~s~---s~Dg~I~iwd-----~~~~~---~~~~----~~~~v~~v~~~~~g~lvt~~ 285 (760)
.... -...|..+.++||| .++.. ..++.|.+-- .+... .... ....+.++.|.+++.|+..+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 1111 11289999999999 44433 3456666653 33111 1111 23488999999999955444
Q ss_pred c
Q 004329 286 S 286 (760)
Q Consensus 286 ~ 286 (760)
.
T Consensus 184 ~ 184 (253)
T PF10647_consen 184 R 184 (253)
T ss_pred C
Confidence 4
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.61 E-value=1.6 Score=46.83 Aligned_cols=106 Identities=12% Similarity=0.227 Sum_probs=73.0
Q ss_pred EEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 22 VRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 22 V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
...++|.-++. ++.+-..+.+.+||+.+.... ....-..|... -+.|++... .++.|...|.+.+++.
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytq---qLE~gg~~s~s--ll~wsKg~~-----el~ig~~~gn~viynh 146 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---QLESGGTSSKS--LLAWSKGTP-----ELVIGNNAGNIVIYNH 146 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHH---HHhccCcchHH--HHhhccCCc-----cccccccccceEEEec
Confidence 34556665555 566677889999999754311 11111112222 267887776 3778888999999998
Q ss_pred CCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEE
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vw 137 (760)
.+.+.+-....|..+++++++. .++.+.++.|..+.+-
T Consensus 147 gtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 147 GTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred cchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 8777666666699999999998 8888888888776554
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.44 E-value=0.42 Score=51.00 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=93.5
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCceEEEeecC-CC
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQVLMEMVGH-TA 230 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~~~~~~~h-~~ 230 (760)
...|.+.+. ++.++.+..+..||-......-...++....++|..++. ++.+-..+.+.+||+..+-.+++... ..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 345666544 888899999999985544433333445555677776443 66777889999999866544444321 11
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEeCCceEEEE--e-cCCcEEEEEEccCCcEEEEEcCCcEEEE
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWKDGVCVQSI--E-HPGCVWDAKFLENGDIVTACSDGVTRIW 293 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~~~~~~--~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw 293 (760)
.-.-+.|++.. .++.+...|.+.|++.+.....+ + |...++++++.+.+..+.++.|..+.+-
T Consensus 119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 11126688877 88888899999999944433332 3 8889999999999887777777665443
No 449
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=71.93 E-value=1.7e+02 Score=32.73 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=115.4
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC-ccEEEEEec-CCeEEEEECCCeEEEEECCc-e
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK-LQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-L 142 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-~ 142 (760)
.+|..+.+...+. +..|+.||- ..||..+++.+..-.... ..|..+..+ .+.+..|+++|. .+.+... .
T Consensus 165 ~~V~aLv~D~~g~------lWvgT~dGL-~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqGv-~~~e~~G~~ 236 (671)
T COG3292 165 TPVVALVFDANGR------LWVGTPDGL-SYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQGV-YLQEAEGWR 236 (671)
T ss_pred ccceeeeeeccCc------EEEecCCcc-eEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccce-EEEchhhcc
Confidence 4556666655554 788888884 556777776655443333 556666666 777899988884 3333221 1
Q ss_pred eEEe--ecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEe--ec--CCCceEEEEEeCCCeEEEEeCCCeEEEEe
Q 004329 143 VEFW--EAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTF--VG--HTDTVRGLSVMPGVGIISASHDCTIRLWA 216 (760)
Q Consensus 143 ~~~~--~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~--~~--h~~~V~~l~~~~~~~l~s~s~dg~I~iwd 216 (760)
.... .-....|..+.-..+|.+..|+..|..+.--.+..+... +. .-..|.++....++.+.+++.+|.+++-+
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred ccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 1111 112344555555556778888888766554433333221 11 22456677766688899999999888766
Q ss_pred cCCceEEEeecCCCc-EEEEEEeCCC---eEEEEeCCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCCcEEEEEcCC
Q 004329 217 LTGQVLMEMVGHTAI-VYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDG 288 (760)
Q Consensus 217 ~~~~~~~~~~~h~~~-v~~v~~~p~~---~l~s~s~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g~lvt~~~dg 288 (760)
-.-.....+....+. +-..+..|.. .+--...-|.+.+-+ ++..+.+.. .+..|+.+++..+|.+-.|+...
T Consensus 317 a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~ 396 (671)
T COG3292 317 ADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQN 396 (671)
T ss_pred chhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEeccc
Confidence 432221112111111 1111111110 111111111222222 333333322 22366677777777777777764
Q ss_pred cEEEEeCCC
Q 004329 289 VTRIWTVHS 297 (760)
Q Consensus 289 ~I~vw~~~~ 297 (760)
-+..|+-++
T Consensus 397 GLsrl~n~n 405 (671)
T COG3292 397 GLSRLDNKN 405 (671)
T ss_pred chhhhccCC
Confidence 555566555
No 450
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.80 E-value=1.2e+02 Score=30.96 Aligned_cols=156 Identities=9% Similarity=0.079 Sum_probs=91.5
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
+.|-...|.++.|+|+.+ |.+......-.||=..+|+... ...+.+ -..-..+.|..++. ++++--.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir---tiPL~g-~~DpE~Ieyig~n~-----fvi~dER~~~ 151 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR---TIPLTG-FSDPETIEYIGGNQ-----FVIVDERDRA 151 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE---Eecccc-cCChhHeEEecCCE-----EEEEehhcce
Confidence 345566699999999998 7777777777777555565211 111222 22344677777765 4555566788
Q ss_pred EEEEECCCCceEEE-------Ee--CC-CccEEEEEec--CCeEEEEECCCeEEEEECCceeEEee-----cC-------
Q 004329 94 VLVWDLGSGEKVQT-------LQ--GH-KLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFWE-----AH------- 149 (760)
Q Consensus 94 I~vwd~~~~~~~~~-------l~--~h-~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~-----~~------- 149 (760)
+.++.+.....+.. +. .+ +...-.++|+ ++.++.+-...-+.+|........+. .+
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 88887765432211 11 12 5567788997 55577777777777775432111111 11
Q ss_pred CcCeEEEEEeCC-Cc-EEEEECCCcEEEEeCC
Q 004329 150 NAPIQTVIRIPS-GE-IVSGSSDTTIKLWKGK 179 (760)
Q Consensus 150 ~~~v~~v~~~~~-~~-l~tgs~dg~i~iwd~~ 179 (760)
-..|.++.+.+. +. ++-+..++.+.-.|..
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 234566677754 33 5566667777666643
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=71.54 E-value=12 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=23.5
Q ss_pred CCEEEEEEcCC-C--e-EEEEECCCeEEEEeCCC
Q 004329 20 DDVRGICVCDN-V--G-IATSSRDRTVRFWSLDP 49 (760)
Q Consensus 20 ~~V~~v~~~~~-~--~-l~tgs~Dg~i~iWd~~~ 49 (760)
+.|+++.|+|+ + . |+-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47999999963 3 2 66666778999999984
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.48 E-value=85 Score=33.21 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEecCCce---EEEe----ecCCCcEEEEEEeCC
Q 004329 191 TVRGLSVMPGVGIISASHDCTIRLWALTGQV---LMEM----VGHTAIVYSIDSHAS 240 (760)
Q Consensus 191 ~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~----~~h~~~v~~v~~~p~ 240 (760)
..++|+|.|++.++++...|.|++++..+.. +... .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 3567888888887777888888888855543 2222 123457788899984
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=71.15 E-value=3.5 Score=47.53 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=85.9
Q ss_pred cCCCceEeEEeccC-----CCCEEEEEEcC---CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE--
Q 004329 5 DFKEYQLSSELRGH-----EDDVRGICVCD---NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW-- 73 (760)
Q Consensus 5 d~~~~~l~~~l~gH-----~~~V~~v~~~~---~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~-- 73 (760)
|.-.+++...|.-| ...+.-|.|+| +.. +..+-.++++++-..++.. ...+.+|...+..++|
T Consensus 161 d~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~------~~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 161 DVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL------RSLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred HhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH------HHHHHhcCCCcccHHHHh
Confidence 33345554444433 45566666664 333 7777788899988776433 2344557776666654
Q ss_pred ---------eCCCCCCCCcEEEEEeCCCeEEEEECC-----CCceEEEEeCCC-c-cEEEEEecCC-----------eEE
Q 004329 74 ---------ISPNEEFPEGGLVSGGMDTMVLVWDLG-----SGEKVQTLQGHK-L-QVTGVTLDNE-----------DIV 126 (760)
Q Consensus 74 ---------~~~~~~~~~~~l~sgs~dg~I~vwd~~-----~~~~~~~l~~h~-~-~V~~l~~~~~-----------~l~ 126 (760)
+|||. .++..+.||.++.|.+. ..++....+.|. . .||.+ +++. .++
T Consensus 235 ~g~~~l~~lSpDGt-----v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 235 EGVLKLASLSPDGT-----VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred hchhhheeeCCCCc-----EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEE
Confidence 55555 57777777777776552 223445556665 2 34444 4211 134
Q ss_pred EEEC-CCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-------------EEEEECCCcEEEEeCCC
Q 004329 127 SSSV-DSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-------------IVSGSSDTTIKLWKGKK 180 (760)
Q Consensus 127 sgs~-dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-------------l~tgs~dg~i~iwd~~~ 180 (760)
+++. +..+++|... +|. +......|..+. -+++. ++.-+-+++|.+|..++
T Consensus 309 tttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 4443 4458888643 232 222222233333 22222 33456688888886443
No 454
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.99 E-value=1.5e+02 Score=31.74 Aligned_cols=210 Identities=16% Similarity=0.129 Sum_probs=108.1
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCC--ccEEE-EEecCCeEEEEECCCeEEEEEC--CceeEEeecCC-cCeEEE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHK--LQVTG-VTLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHN-APIQTV 156 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~--~~V~~-l~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~-~~v~~v 156 (760)
+.++.+..+|.|.-.|.++++.+.....-. ..+.+ +...++.++.++.+|.+..+|. ++......... ..+..-
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 358888999999999999998765443221 12221 2223778999999998888887 45555554444 112222
Q ss_pred EEeCCCcEEEEECCCcEEEEeCCCceEEee--cCC---CceEEEEEeCCCeEEEEeC--CCeEEEEec-CCceEEEeecC
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGKKCAQTFV--GHT---DTVRGLSVMPGVGIISASH--DCTIRLWAL-TGQVLMEMVGH 228 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~--~h~---~~V~~l~~~~~~~l~s~s~--dg~I~iwd~-~~~~~~~~~~h 228 (760)
....++.+..++.++.+...|..+....+. ... ..+..-....++.++.+.. ++.+.-.|. +|........+
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~ 228 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVS 228 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeee
Confidence 333345566666778887777554333222 111 1111111122455555555 565666665 56655553211
Q ss_pred -----CC-----cEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCcEEEEE---cCCcEEEE
Q 004329 229 -----TA-----IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTAC---SDGVTRIW 293 (760)
Q Consensus 229 -----~~-----~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~---~dg~I~vw 293 (760)
.. .+..-...-++-++.++.++.+...+ +++.+..+..... .....+.++. .||.+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~------~~~~~~~~~~~~~~dG~v~~~ 302 (370)
T COG1520 229 QTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGS------VQGSGLYTTPVAGADGKVYIG 302 (370)
T ss_pred cccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccE------eccCCeeEEeecCCCccEEEE
Confidence 10 11111111122345556666555555 5565555554310 0111233222 47788777
Q ss_pred eCCCC
Q 004329 294 TVHSD 298 (760)
Q Consensus 294 ~~~~~ 298 (760)
.....
T Consensus 303 ~~~~~ 307 (370)
T COG1520 303 FTDND 307 (370)
T ss_pred Eeccc
Confidence 65444
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.99 E-value=82 Score=28.17 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=65.0
Q ss_pred EEcCCCe-EEEEECCCeEEEEeCCCCCCcc--ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC
Q 004329 26 CVCDNVG-IATSSRDRTVRFWSLDPSDKRK--YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG 102 (760)
Q Consensus 26 ~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~ 102 (760)
.|..... |+.++.-|.|.|++........ ......+..-...|++++--+-........|+.|+. ..+..||++..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 4544444 8888999999999976433211 111222333466788886554321111235666654 67889999876
Q ss_pred ceEEEEeCCCccEEEEEec-----CCeEEEEECCCeEEEEECC
Q 004329 103 EKVQTLQGHKLQVTGVTLD-----NEDIVSSSVDSTLKRWRKG 140 (760)
Q Consensus 103 ~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~v~vwd~~ 140 (760)
..+..- .-...|.++.+- ...++..+.+..|.-+|..
T Consensus 84 ~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 84 SDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred chhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 554322 234567777662 3346666666666666654
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.92 E-value=33 Score=39.24 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred eEEEEECCCeEEEEeCCCCC--Cccceeee--------Eee-----------CCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 32 GIATSSRDRTVRFWSLDPSD--KRKYHSSK--------ILL-----------GHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 32 ~l~tgs~Dg~i~iWd~~~~~--~~~~~~~~--------~~~-----------~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
.++.+..||.+......... ...+.... .+. .....+.+++.+...- ....++++.+.
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~tl~~ 238 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI-NDDTFLFTLSR 238 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE------ETTTEEEEEET
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee-CCCCEEEEEeC
Confidence 38888899988888766411 00111100 000 0123455555555110 01237999999
Q ss_pred CCeEEEEECCCCceEEEEeCC
Q 004329 91 DTMVLVWDLGSGEKVQTLQGH 111 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h 111 (760)
|+++++||+.+++++.+..-.
T Consensus 239 D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TSEEEEEETTTTCEEEEEETT
T ss_pred CCeEEEEECCCCeEEEEeccc
Confidence 999999999999997776543
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=68.55 E-value=1.4e+02 Score=31.68 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCcEEEEECCCcEEEEeCCCce-EEe-------ecCCCceEEEEEeCC
Q 004329 152 PIQTVIRIPSGEIVSGSSDTTIKLWKGKKCA-QTF-------VGHTDTVRGLSVMPG 200 (760)
Q Consensus 152 ~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~-~~~-------~~h~~~V~~l~~~~~ 200 (760)
..+++++.|+|+++++...|.|++++..... ..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999998888999999999833222 221 123456789999993
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=82 Score=38.71 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=79.9
Q ss_pred EEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC-CC--cEEEEEeCCCeEEEEECC----CCce---
Q 004329 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF-PE--GGLVSGGMDTMVLVWDLG----SGEK--- 104 (760)
Q Consensus 35 tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~-~~--~~l~sgs~dg~I~vwd~~----~~~~--- 104 (760)
=.+.|+.+.+|+.+++. ....+.+-+..|..|......... .. .+++....--.|.++-+. ++..
T Consensus 94 WiTiDn~L~lWny~~~~-----e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDN-----ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EEEeCCeEEEEEcCCCC-----ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence 34568999999999755 344455556666666654333211 00 122222333445554332 1111
Q ss_pred --EEEEeCCCccEEEEEec-CCeEEEEECCCeEEE--EECC-----c-e----------------eEEee-cCCcCeEEE
Q 004329 105 --VQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKR--WRKG-----K-L----------------VEFWE-AHNAPIQTV 156 (760)
Q Consensus 105 --~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~v--wd~~-----~-~----------------~~~~~-~~~~~v~~v 156 (760)
...+......|.|+... +++++.++.||.+.- |... + + +..+. .+..+|..+
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 12223345678888854 888888888884432 1111 0 1 11122 457789999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCCC
Q 004329 157 IRIPSGE-IVSGSSDTTIKLWKGKK 180 (760)
Q Consensus 157 ~~~~~~~-l~tgs~dg~i~iwd~~~ 180 (760)
....... +.+-+..|+|+.||++.
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 8877654 67889999999999553
No 459
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.12 E-value=15 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.9
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTL 108 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l 108 (760)
+.++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35888999999999999999887653
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=65.37 E-value=99 Score=33.96 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=22.3
Q ss_pred EEEEeCCCeEEEEECC-------CCceEEEE-eCCCccEEEEEecCCeEEEEECCCeEEEEE
Q 004329 85 LVSGGMDTMVLVWDLG-------SGEKVQTL-QGHKLQVTGVTLDNEDIVSSSVDSTLKRWR 138 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~-------~~~~~~~l-~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd 138 (760)
.+-...|..+.+|+.. ++.....+ .++...+. +..+.....|.|+.|+
T Consensus 39 ~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~------~v~lv~p~~G~v~f~~ 94 (422)
T PF08801_consen 39 RAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIP------GVGLVKPKTGRVVFWE 94 (422)
T ss_dssp EEEEEETTEEEEEE--SS--GG--EEEEE-----------------SEEEEE-TT-EEEEES
T ss_pred EEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCc------eEEEEEcCCCCEEecc
Confidence 4666678899999984 22222222 22333222 2355667788888885
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=64.39 E-value=44 Score=31.49 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=25.4
Q ss_pred CeEEEEEeCCCCCCC-CcEEEEEeCCCeEEEEECCC
Q 004329 67 FVGPLAWISPNEEFP-EGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~-~~~l~sgs~dg~I~vwd~~~ 101 (760)
.|.+++|+|.|-... ..+|++.+.+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 788888988764322 34677888888888887653
No 462
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.06 E-value=1.9e+02 Score=30.21 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhhcCCCCCcchHHHHHHHHhh-cCCCCccHHHHHhhHHHHHHHhhhccCCCCc--hhHHHHHHH------
Q 004329 598 QNDVLMEMIEKVSSNPTLPANLLTGIRAVTN-LFKNSSWYSWLQKNRSEILDAFSSCYSSSNK--NVQLSYSTL------ 668 (760)
Q Consensus 598 ~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N-~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k--~~~~a~atl------ 668 (760)
++..+..++..-. ...-..++++|.+.- +..|+..|+.++. -.+++++...+....| .+|-+...+
T Consensus 146 g~~vvv~lL~~~~---~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d 220 (461)
T KOG4199|consen 146 AMAVVLKLLALKV---ESEEVTLLTLQWLQKACIMHEVNRQLFME--LKILELILQVLNREGKTRTVRELYDAIRALLTD 220 (461)
T ss_pred cHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC
Confidence 5666666664321 122345677887754 4789999998877 4577777766544433 455433322
Q ss_pred ---------HHHHHhhhhhcCCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcchhHHHHHhhcc-ChHHHHHHH
Q 004329 669 ---------ILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDF-DVGNIARVA 738 (760)
Q Consensus 669 ---------~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~~~~~~~~~~~~-~~~~~~~~~ 738 (760)
++|+|-.+.+. ..+-++.|++.. -.||+.+--++.+|++|....|+-+..-.. +++..++-+
T Consensus 221 DDiRV~fg~ah~hAr~ia~e-------~~l~~L~Eal~A-~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i 292 (461)
T KOG4199|consen 221 DDIRVVFGQAHGHARTIAKE-------GILTALTEALQA-GIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCI 292 (461)
T ss_pred CceeeecchhhHHHHHHHHh-------hhHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 23333332221 134445566653 346899999999999998744433322222 333344444
Q ss_pred hhcCChhHHHHHHHHHHHhh
Q 004329 739 KASKETKIAEVGADIELLAK 758 (760)
Q Consensus 739 ~~~~~~~~~~~~~ei~~ll~ 758 (760)
.++.+.-.++++++.+++||
T Consensus 293 ~d~n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 293 DDSNEQGNRTLAKTCLSLLR 312 (461)
T ss_pred hhhchhhHHHHHHHHHHHHH
Confidence 45666667788888888885
No 463
>PHA02790 Kelch-like protein; Provisional
Probab=63.94 E-value=2.5e+02 Score=31.50 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=49.3
Q ss_pred CCe-EEEEECCC-----eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC--CeEEEEECCC
Q 004329 30 NVG-IATSSRDR-----TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD--TMVLVWDLGS 101 (760)
Q Consensus 30 ~~~-l~tgs~Dg-----~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d--g~I~vwd~~~ 101 (760)
++. ++.||.++ ++..||..++. |.....+....... +++. -++. +.+.||.+ ..+..||..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~---W~~~~~m~~~r~~~-~~v~-~~~~-----iYviGG~~~~~sve~ydp~~ 340 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN---WIPIPPMNSPRLYA-SGVP-ANNK-----LYVVGGLPNPTSVERWFHGD 340 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE---EEECCCCCchhhcc-eEEE-ECCE-----EEEECCcCCCCceEEEECCC
Confidence 345 67777653 46677776443 33333222222112 2222 2333 45666653 4578888766
Q ss_pred CceEEE--EeCCCccEEEEEecCCeEEEEECCC---eEEEEECCcee
Q 004329 102 GEKVQT--LQGHKLQVTGVTLDNEDIVSSSVDS---TLKRWRKGKLV 143 (760)
Q Consensus 102 ~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~dg---~v~vwd~~~~~ 143 (760)
++.... +............++...+.|+.++ .+..||.....
T Consensus 341 n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 543221 2211122223334455566666554 36677765433
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=63.88 E-value=81 Score=36.72 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=46.1
Q ss_pred CCcEEEEEEe--CCC-eEEEEeCCCcEEEEe--C--C--ceEEEEecCCcEEEEEEccCC-----c--EEEEEcCCcEEE
Q 004329 229 TAIVYSIDSH--ASG-LIVSGSEDRFAKIWK--D--G--VCVQSIEHPGCVWDAKFLENG-----D--IVTACSDGVTRI 292 (760)
Q Consensus 229 ~~~v~~v~~~--p~~-~l~s~s~Dg~I~iwd--~--~--~~~~~~~~~~~v~~v~~~~~g-----~--lvt~~~dg~I~v 292 (760)
...+++++++ ... ++|+++....|.||- . . .......+...|-+|+|.++. . +++++=.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 4478888888 555 788888888888885 1 1 111133466689999997743 2 455556999999
Q ss_pred EeC
Q 004329 293 WTV 295 (760)
Q Consensus 293 w~~ 295 (760)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 888
No 465
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=62.39 E-value=20 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeC
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQG 110 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~ 110 (760)
.++.++.+|.|+..|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 467779999999999999999888763
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=61.92 E-value=42 Score=36.05 Aligned_cols=154 Identities=11% Similarity=0.076 Sum_probs=86.4
Q ss_pred eecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCce---EEe-ecCCCc----eE-EEEEeCCCe-EEEEeCCCeEEEE
Q 004329 146 WEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCA---QTF-VGHTDT----VR-GLSVMPGVG-IISASHDCTIRLW 215 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~---~~~-~~h~~~----V~-~l~~~~~~~-l~s~s~dg~I~iw 215 (760)
+......|..+-..|+|+.+-.-....+.+++..+.. +.+ ....+. |+ ++....++. ++.++.||.|.-|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 3344566778888999984333333677777643311 111 111111 11 222233555 8999999999888
Q ss_pred -ecC--Cce----EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccCCcEEEEE
Q 004329 216 -ALT--GQV----LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 216 -d~~--~~~----~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~lvt~~ 285 (760)
|.. +.+ ++.+.-....+..+.-..+. -+++-+..|++..+. .....-.++ .-..+.-+++||++..+..-
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee
Confidence 332 211 11111122333333222222 677788888888887 222222222 22366778999999977777
Q ss_pred cCCcEEEEeCCCCe
Q 004329 286 SDGVTRIWTVHSDK 299 (760)
Q Consensus 286 ~dg~I~vw~~~~~~ 299 (760)
..|.++++.++...
T Consensus 376 ~~gki~~~~l~Nr~ 389 (733)
T COG4590 376 DQGKIRLAQLENRN 389 (733)
T ss_pred cCCceEEEEecCCC
Confidence 88999999987654
No 467
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.91 E-value=1.8e+02 Score=29.30 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=72.7
Q ss_pred cEEEEEec--CCeEEEEE---CCCeEEEEECCceeEEeecCCcCeEEEEEeCCCcEEEE-ECCCcEEEEe-C--CCce-E
Q 004329 114 QVTGVTLD--NEDIVSSS---VDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSG-SSDTTIKLWK-G--KKCA-Q 183 (760)
Q Consensus 114 ~V~~l~~~--~~~l~sgs---~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~l~tg-s~dg~i~iwd-~--~~~~-~ 183 (760)
.+.+.+.+ ++.++... ....++++..+....... ....+..-.|.+++.+.+. ..+...+++. . .... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 45566665 44444444 344566666654443332 2236677788888886554 3455556663 1 1111 1
Q ss_pred Eeec--CCCceEEEEEeCCCe-EEEEe---CCCeEEEEec----CC------ceEEEeecCCCcEEEEEEeCCC-eEEEE
Q 004329 184 TFVG--HTDTVRGLSVMPGVG-IISAS---HDCTIRLWAL----TG------QVLMEMVGHTAIVYSIDSHASG-LIVSG 246 (760)
Q Consensus 184 ~~~~--h~~~V~~l~~~~~~~-l~s~s---~dg~I~iwd~----~~------~~~~~~~~h~~~v~~v~~~p~~-~l~s~ 246 (760)
.... -...|..+.++||+. ++... .++.|.+--+ .+ ............+..+.|.+++ +++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 1211 112899999999876 44333 3567776653 23 1111122335688999999999 44433
Q ss_pred e
Q 004329 247 S 247 (760)
Q Consensus 247 s 247 (760)
.
T Consensus 184 ~ 184 (253)
T PF10647_consen 184 R 184 (253)
T ss_pred C
Confidence 3
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=61.61 E-value=19 Score=38.49 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=28.6
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCC
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSD 51 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~ 51 (760)
+.++.+..-..+|..+-..|||+ +..-+. ..+.++++.+..
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~ 252 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS 252 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc
Confidence 34445666677888888899999 444333 789999987443
No 469
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=60.98 E-value=19 Score=41.60 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCcEEEEECCCcEEEEeCC-CceE-----EeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec------CCceEEEeec
Q 004329 160 PSGEIVSGSSDTTIKLWKGK-KCAQ-----TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL------TGQVLMEMVG 227 (760)
Q Consensus 160 ~~~~l~tgs~dg~i~iwd~~-~~~~-----~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~------~~~~~~~~~~ 227 (760)
+.-.+..|+.++.+.++... .... ........+.++.++++ .+..|.-||++-.+-- .+++...+..
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred CCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-ccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 33447788899999998743 1111 12223445666666643 2555555565555431 1223333334
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCcEEEEeCCceE------EEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeee
Q 004329 228 HTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCV------QSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 228 h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~~~~------~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~ 301 (760)
...+|.+.++..+ ++.++++|.|.++...+.. ....|...|+++.+..+|-+++-.+...++.++..+-...
T Consensus 625 g~lPvrsla~~ed--~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hl 702 (925)
T KOG3522|consen 625 GSLPVRSLAFQED--FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHL 702 (925)
T ss_pred CCccccchhhhhc--eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCc
Confidence 4567778777776 7778899999999822222 2223666899999988877666666666777755544433
No 470
>PHA02790 Kelch-like protein; Provisional
Probab=60.84 E-value=2.3e+02 Score=31.70 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=31.9
Q ss_pred CCe-EEEEECC--CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC---eEEEEECCCCc
Q 004329 30 NVG-IATSSRD--RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT---MVLVWDLGSGE 103 (760)
Q Consensus 30 ~~~-l~tgs~D--g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg---~I~vwd~~~~~ 103 (760)
++. .+.||.+ .++..||..++. |.....+....... +++.. ++. +.+.||.++ .+..||..+.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~---W~~~~~l~~~r~~~-~~~~~-~g~-----IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA---WVNMPSLLKPRCNP-AVASI-NNV-----IYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe---EEECCCCCCCCccc-EEEEE-CCE-----EEEecCcCCCCccEEEEeCCCCE
Confidence 456 6667654 357778765432 43333332111111 22211 233 456666543 46788887664
Q ss_pred e
Q 004329 104 K 104 (760)
Q Consensus 104 ~ 104 (760)
-
T Consensus 388 W 388 (480)
T PHA02790 388 W 388 (480)
T ss_pred E
Confidence 3
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=60.50 E-value=2.8e+02 Score=31.03 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=56.2
Q ss_pred EEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCC---cEEEEEEeCCC-eEEEEe--------------CCCcEEEEe
Q 004329 195 LSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTA---IVYSIDSHASG-LIVSGS--------------EDRFAKIWK 256 (760)
Q Consensus 195 l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~---~v~~v~~~p~~-~l~s~s--------------~Dg~I~iwd 256 (760)
+...+++.++.++. ..++.+|+.|+.+....-... .-..+...|+| +|+.+. .|. |..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC
Confidence 55667777776666 888888988887766543222 13456667787 555444 222 22222
Q ss_pred -CCceEEEEe--------------------------cC--CcEEEEEEcc-CCcEEEEEcC-CcEEEEeCCCCeeechhh
Q 004329 257 -DGVCVQSIE--------------------------HP--GCVWDAKFLE-NGDIVTACSD-GVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 257 -~~~~~~~~~--------------------------~~--~~v~~v~~~~-~g~lvt~~~d-g~I~vw~~~~~~~~~~~~ 305 (760)
+|+.+..+. .. -.++++.+.+ ++.++.++.. ..|...|..+++....+.
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 333333321 01 1589999998 4447666664 488888988888776554
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=59.41 E-value=4e+02 Score=32.41 Aligned_cols=91 Identities=10% Similarity=0.174 Sum_probs=52.3
Q ss_pred EEEeCCCeEEEEECCCCceEEEE--eCCCccEEEEEecCCeEEEEECCCeEEEE--ECC-ceeEEeecC--CcCeEEEEE
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTL--QGHKLQVTGVTLDNEDIVSSSVDSTLKRW--RKG-KLVEFWEAH--NAPIQTVIR 158 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l--~~h~~~V~~l~~~~~~l~sgs~dg~v~vw--d~~-~~~~~~~~~--~~~v~~v~~ 158 (760)
+-++....+++||+...++.+.. +.-...|+.+.+...+++.|...-.+..+ +.+ +.+..+... ...|+++.+
T Consensus 948 ~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~ 1027 (1205)
T KOG1898|consen 948 VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALEL 1027 (1205)
T ss_pred EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEE
Confidence 44556678999999877665443 33467788888888888888766655543 222 222222221 223445555
Q ss_pred eCCCcEEEEECCCcEEEE
Q 004329 159 IPSGEIVSGSSDTTIKLW 176 (760)
Q Consensus 159 ~~~~~l~tgs~dg~i~iw 176 (760)
...+.++.+..-|.+.+.
T Consensus 1028 lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1028 LDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred ecCCceeeccccCcEEEE
Confidence 544555555444444443
No 473
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=58.67 E-value=30 Score=29.10 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcC--CCCCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHH
Q 004329 599 NDVLMEMIEKVSS--NPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTL 668 (760)
Q Consensus 599 ~~~~~~~l~~~~~--~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl 668 (760)
...+..++..+.. ....+..+..++..|-|+. ...+..++.++.+|.+.+......++.+||.|+..|
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~--k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS--KVARGEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
No 474
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=57.90 E-value=2.7e+02 Score=29.89 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=99.4
Q ss_pred EcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE
Q 004329 27 VCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ 106 (760)
Q Consensus 27 ~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 106 (760)
...++++..+..||.|.-.|.+++... |...... ....+.+=.+..++ .++.++.+|.++.+|.++|+.+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~--~~~~~~~~~~~~~G------~i~~g~~~g~~y~ld~~~G~~~W 135 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG--AVAQLSGPILGSDG------KIYVGSWDGKLYALDASTGTLVW 135 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEE-ecccCcC--cceeccCceEEeCC------eEEEecccceEEEEECCCCcEEE
Confidence 445677888888998888888766521 1111100 01112222222244 49999999999999999999988
Q ss_pred EEeCCC-ccE-EEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCC---cCeEEEEEeCCCcEEEEEC--CCcEEEEe
Q 004329 107 TLQGHK-LQV-TGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHN---APIQTVIRIPSGEIVSGSS--DTTIKLWK 177 (760)
Q Consensus 107 ~l~~h~-~~V-~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~---~~v~~v~~~~~~~l~tgs~--dg~i~iwd 177 (760)
...... ..+ ......+..++.++.++.+...+.. .......... ..+..-....++.++.+.. ++.+.-.|
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 136 SRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred EEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEE
Confidence 887665 111 1122235556666677887777654 3333322211 1111111123455555555 55455555
Q ss_pred CCCceEEee-------cCCCc--eEEEEE---eCCCeEEEEeCCCeEEEEec-CCceEEEeecC
Q 004329 178 GKKCAQTFV-------GHTDT--VRGLSV---MPGVGIISASHDCTIRLWAL-TGQVLMEMVGH 228 (760)
Q Consensus 178 ~~~~~~~~~-------~h~~~--V~~l~~---~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h 228 (760)
......... +.... ...+.. .-++.+..++.++.+...|. +++.+..+...
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 433222221 11100 001111 11444667777887777774 57777766543
No 475
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=57.71 E-value=2.2e+02 Score=28.82 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=67.0
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
.+..+.-++.++.|+=.+...+..+-.+..++++.+.+. ..+..+|+|.-.++.|+++-...+.. ....+..+++
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~---l~~~i~~ll~ 141 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHM---LANYIPDLLS 141 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhh---HHhhHHHHHH
Confidence 445577799999999888888877777778888776553 34678999999999999976433221 2223333445
Q ss_pred HhhccccchhHHHHHHHHHhhhcchh
Q 004329 695 IAEEESIEVDSKYRALVAIGTLMLEG 720 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~~~ 720 (760)
++.. .+.++.+..|-.|.+|...+
T Consensus 142 LL~~--G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 142 LLSS--GSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHc--CChHHHHHHHHHHHHhccCH
Confidence 5542 35566667777777776643
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=57.64 E-value=2.4e+02 Score=29.32 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=108.4
Q ss_pred eEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce-------
Q 004329 32 GIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK------- 104 (760)
Q Consensus 32 ~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~------- 104 (760)
.|+.|+.+|...+. ..... ... ....+...|.++...+..+. +++.++....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~-~~~~~---~~~--~kl~~~~~v~q~~v~~~~~l----Li~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 15 WLLVGTEEGLYVLN-ISDQP---GTL--EKLIGRRSVTQIWVLEENNV----LLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred EEEEEeCCceEEEE-cccCC---CCe--EEecCcCceEEEEEEhhhCE----EEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence 49999999876655 44211 011 22235678999999987762 344445555699999832221
Q ss_pred --------EEEEeCCCccEEEEEec-CC--eEEEEECCCeEEEEECCceeEEee----------cCCcCeEEEEEeCC--
Q 004329 105 --------VQTLQGHKLQVTGVTLD-NE--DIVSSSVDSTLKRWRKGKLVEFWE----------AHNAPIQTVIRIPS-- 161 (760)
Q Consensus 105 --------~~~l~~h~~~V~~l~~~-~~--~l~sgs~dg~v~vwd~~~~~~~~~----------~~~~~v~~v~~~~~-- 161 (760)
....-+|.......... +. .+++++...+|.++...+....+. ....++..+..+++
T Consensus 85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T smart00036 85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE 164 (302)
T ss_pred ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence 01112344333333333 22 255666666777653322211111 11223333333333
Q ss_pred -CcEEEEECCCcEEEEeCCCc----eE---E--eecCC-CceEEEEEeCCCeEEEEeCCCeEEEEecCC-ceEEE-eecC
Q 004329 162 -GEIVSGSSDTTIKLWKGKKC----AQ---T--FVGHT-DTVRGLSVMPGVGIISASHDCTIRLWALTG-QVLME-MVGH 228 (760)
Q Consensus 162 -~~l~tgs~dg~i~iwd~~~~----~~---~--~~~h~-~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~-~~~~~-~~~h 228 (760)
..++.|+..+...+++.... .. . ..... .++ ++...+++.++.+-.+. ..+-|..| ..... ...-
T Consensus 165 ~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~w 242 (302)
T smart00036 165 RPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLCYDEF-GVFVNLYGKRRSRNPILHW 242 (302)
T ss_pred ceEEEEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEEECcE-EEEEeCCCCccccceEEEc
Confidence 23667766533333332210 00 0 00111 233 33333345555555444 45556666 32221 1122
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEec
Q 004329 229 TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH 266 (760)
Q Consensus 229 ~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~ 266 (760)
.....++++... ++++-+.+ .|.|++ ++..++++.+
T Consensus 243 ~~~p~~~~~~~p-yll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYHSP-YLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEECC-EEEEEcCC-cEEEEECCCCceEEEEec
Confidence 445567777653 55555544 499998 7788888876
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.43 E-value=4.3e+02 Score=32.14 Aligned_cols=76 Identities=25% Similarity=0.243 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCC------e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC----CcEEEE
Q 004329 19 EDDVRGICVCDNV------G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP----EGGLVS 87 (760)
Q Consensus 19 ~~~V~~v~~~~~~------~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~----~~~l~s 87 (760)
+..|.|+++.++. + ++.++.|+++++..+.... .......++-...+.++.+.+...... .-++.+
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d---~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~ 658 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD---CLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLI 658 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc---eEEEccccccCCCccceEEEEecccCCccceeEEEEe
Confidence 5678899988665 3 8999999999999998433 222333445566677776665543221 125778
Q ss_pred EeCCCeEEEE
Q 004329 88 GGMDTMVLVW 97 (760)
Q Consensus 88 gs~dg~I~vw 97 (760)
|-.+|.+.-.
T Consensus 659 GL~NGvllR~ 668 (1205)
T KOG1898|consen 659 GLRNGVLLRF 668 (1205)
T ss_pred cccccEEEEE
Confidence 8888876544
No 478
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=56.84 E-value=3.3e+02 Score=34.87 Aligned_cols=260 Identities=14% Similarity=0.180 Sum_probs=130.4
Q ss_pred CEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCc---cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 21 DVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKR---KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 21 ~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
.+.+....+++. ++++....++.+|++...... .......+.+......+|.++++ .|++...+|.++
T Consensus 439 ~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d-------rLFvADseGkLY 511 (1774)
T PF11725_consen 439 KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND-------RLFVADSEGKLY 511 (1774)
T ss_pred hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC-------eEEEEeCCCCEE
Confidence 355566678887 778887888899998754211 11122333444446777777665 288899999988
Q ss_pred EEECCCCc---eE-EEEe-----------CCCccEEEEEec-CCe--EEEEECCCeEEE-------------EECCceeE
Q 004329 96 VWDLGSGE---KV-QTLQ-----------GHKLQVTGVTLD-NED--IVSSSVDSTLKR-------------WRKGKLVE 144 (760)
Q Consensus 96 vwd~~~~~---~~-~~l~-----------~h~~~V~~l~~~-~~~--l~sgs~dg~v~v-------------wd~~~~~~ 144 (760)
.=++...+ .. .... ++...|+.+.-. ++. .+.-..-|.++. |++...+.
T Consensus 512 sa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lv 591 (1774)
T PF11725_consen 512 SADLPAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALV 591 (1774)
T ss_pred ecccccccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeE
Confidence 87774321 11 1111 222233322111 111 111111111111 11111111
Q ss_pred Eee--cCC-----cCeEEEEEeCCCcEEEEECCCcEEEEeCCC-ceE-----------------EeecCCCceEEEEEeC
Q 004329 145 FWE--AHN-----APIQTVIRIPSGEIVSGSSDTTIKLWKGKK-CAQ-----------------TFVGHTDTVRGLSVMP 199 (760)
Q Consensus 145 ~~~--~~~-----~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~-~~~-----------------~~~~h~~~V~~l~~~~ 199 (760)
.-. +-. .+-..+.+...|. .|-.||.|..||... +-. -+.-..+.|..+.+++
T Consensus 592 l~N~~GL~~~~~p~~~~~ldl~r~G~--v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~ 669 (1774)
T PF11725_consen 592 LDNTRGLPKPPAPAPHEILDLGRAGL--VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ 669 (1774)
T ss_pred eeccCCCCCCCCCChHHhhccccccc--eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeeccc
Confidence 100 000 0000111111222 344579999998321 110 1122345666666666
Q ss_pred CCeEEEEeCCCeEEEEec-----CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEe---cCCcE
Q 004329 200 GVGIISASHDCTIRLWAL-----TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE---HPGCV 270 (760)
Q Consensus 200 ~~~l~s~s~dg~I~iwd~-----~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~---~~~~v 270 (760)
...=++-+.+..+.+--. -|..+.-+. ...|..+++..+..+++....|.+.... .+.+ ..+. ..+.|
T Consensus 670 ~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~--~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p-~~l~~~gl~G~i 746 (1774)
T PF11725_consen 670 EHPSIAHGDNNVFALPQRRNKVELGDALEGLE--DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRP-VPLSRPGLSGEI 746 (1774)
T ss_pred CCCccccCCCcccccccccCCCCCCccccCCC--cCcceeEEEEcCCceEEeccCCccccccCCCCC-ccCCCCCCCcch
Confidence 332122222222211110 012222222 4577888888777888899999999887 3332 2222 45789
Q ss_pred EEEEEccCCcEEEEEcCCcEEE
Q 004329 271 WDAKFLENGDIVTACSDGVTRI 292 (760)
Q Consensus 271 ~~v~~~~~g~lvt~~~dg~I~v 292 (760)
..++...+..+.+...+|.+.-
T Consensus 747 k~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 747 KDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred hheeeccccceeEecCCCceee
Confidence 9999988877888888887653
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=56.38 E-value=1.5e+02 Score=26.55 Aligned_cols=99 Identities=6% Similarity=0.034 Sum_probs=55.4
Q ss_pred EEEEeCCCeEEEEecCCc--------eEEEeecCCCcEEEEEEeC---CC---eEEEEeCCCcEEEEe--CCceEEEEec
Q 004329 203 IISASHDCTIRLWALTGQ--------VLMEMVGHTAIVYSIDSHA---SG---LIVSGSEDRFAKIWK--DGVCVQSIEH 266 (760)
Q Consensus 203 l~s~s~dg~I~iwd~~~~--------~~~~~~~h~~~v~~v~~~p---~~---~l~s~s~Dg~I~iwd--~~~~~~~~~~ 266 (760)
|++++.-|.|.|++.... .-..+..-...|++++.-+ +. .|+.|+ ...+..|| ...-+..-..
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhhC
Confidence 666666667777664211 1112223345666665333 22 555554 55688999 2222222335
Q ss_pred CCcEEEEEEcc----CCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 267 PGCVWDAKFLE----NGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 267 ~~~v~~v~~~~----~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
++.|.++.+-. +..++..+.+..|.=||.+..+...
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 56777777733 2237777777888888877665544
No 480
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=56.22 E-value=1e+02 Score=33.17 Aligned_cols=107 Identities=14% Similarity=0.051 Sum_probs=62.4
Q ss_pred chHHHHHHHHhhc-CCCCccHHHHHhh--HHHHHHHhhhccCCCCc---hhHHHHHHHHHHHHhhhhhcCCchhhhhHHH
Q 004329 617 ANLLTGIRAVTNL-FKNSSWYSWLQKN--RSEILDAFSSCYSSSNK---NVQLSYSTLILNYAVLLIEKKDEEGQSHVLS 690 (760)
Q Consensus 617 ~~~ml~lR~l~N~-f~~~~~~~~~~~~--~~~i~~~~~~~~~~~~k---~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~ 690 (760)
-...=++|+|.|. +.+..+|..++.. ..-+++.+.......+. ....-+-.++.||..-.. +.+.+++.
T Consensus 102 ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~-----~l~aq~~~ 176 (604)
T KOG4500|consen 102 EVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR-----ELRAQVAD 176 (604)
T ss_pred cHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH-----HHHHHHHh
Confidence 3356689999997 7778888887763 33455665554433332 233334567888875422 23333333
Q ss_pred H-----HHHHhhccccchhHHHHHHHHHhhhcc--hhHHHHHhhc
Q 004329 691 A-----ALEIAEEESIEVDSKYRALVAIGTLML--EGLVKKIALD 728 (760)
Q Consensus 691 ~-----~~~~~~~~~~~~e~~~R~l~alGtl~~--~~~~~~~~~~ 728 (760)
+ +...+.-.-++.+--..+|++.|+|+. ...+.+.+++
T Consensus 177 ~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d 221 (604)
T KOG4500|consen 177 AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD 221 (604)
T ss_pred cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc
Confidence 2 222232234556777899999999987 3344444444
No 481
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=55.25 E-value=54 Score=30.89 Aligned_cols=24 Identities=4% Similarity=0.271 Sum_probs=16.7
Q ss_pred eEEEEEeCCCcEEEEECCCcEEEEe
Q 004329 153 IQTVIRIPSGEIVSGSSDTTIKLWK 177 (760)
Q Consensus 153 v~~v~~~~~~~l~tgs~dg~i~iwd 177 (760)
..+++|+.||+++++..+ .|.|.+
T Consensus 7 ~~~l~WS~Dg~laV~t~~-~v~IL~ 30 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATGE-SVHILD 30 (173)
T ss_pred CcCeeECCCCCEEEEcCC-eEEEEe
Confidence 457889999987776654 455554
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.75 E-value=85 Score=34.56 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=55.8
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEF 145 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~ 145 (760)
.|..+..++.|. .++..|.+|.+..+=.+..-.-..++.....|+|=.+. +..+++.+..
T Consensus 105 eV~~vl~s~~GS-----~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-----HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-------------- 165 (741)
T ss_pred EEEEEEecCCCc-----eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc--------------
Confidence 456666677776 46777777766554433222233344444456555554 4444444321
Q ss_pred eecCCcCeEEEEEeCCC----cEEEEECCCcEEEEeCCCceEEe
Q 004329 146 WEAHNAPIQTVIRIPSG----EIVSGSSDTTIKLWKGKKCAQTF 185 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~----~l~tgs~dg~i~iwd~~~~~~~~ 185 (760)
-.+..+.|+|+. .++.-+.|..||+||..+....+
T Consensus 166 -----ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 166 -----LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred -----eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 124456788764 37788899999999976655443
No 483
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=54.67 E-value=4.6e+02 Score=31.62 Aligned_cols=222 Identities=11% Similarity=0.041 Sum_probs=110.1
Q ss_pred cCCCe-EEEEECCCeEEEEeCCCCCCc----cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC--
Q 004329 28 CDNVG-IATSSRDRTVRFWSLDPSDKR----KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG-- 100 (760)
Q Consensus 28 ~~~~~-l~tgs~Dg~i~iWd~~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~-- 100 (760)
.++.. +++-+.+|.|+--+..+-... .......+.. ...+..+......+ .++..+..|.+......
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d-----~LllfTs~Grv~~l~~~~I 566 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHD-----YLLFFTNRGKVYWLKVYQI 566 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCC-----eEEEEeCCCcEEEEEhhhC
Confidence 34444 888999999998766432110 0001111222 23333333333333 36777777876665442
Q ss_pred -C------CceE---EEEeCCCccEEEEEe---c-CCeEEEEECCCeEEEEECCce---------eEEeecCCcCeEE-E
Q 004329 101 -S------GEKV---QTLQGHKLQVTGVTL---D-NEDIVSSSVDSTLKRWRKGKL---------VEFWEAHNAPIQT-V 156 (760)
Q Consensus 101 -~------~~~~---~~l~~h~~~V~~l~~---~-~~~l~sgs~dg~v~vwd~~~~---------~~~~~~~~~~v~~-v 156 (760)
. |..+ ..+.....-|.++.. . +..++..+.+|.++-.+.... ...+.. .+.+.. +
T Consensus 567 P~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~ 645 (800)
T TIGR01063 567 PEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVR 645 (800)
T ss_pred cCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEE
Confidence 1 1222 122222333445553 3 456999999999998854311 111222 233333 3
Q ss_pred EEeCCCcEEEEECCCcEEEEeCCC---------ceEEee-cCCCceEEEEEeC-CCeEEEEeCCCeEEEEecC-------
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGKK---------CAQTFV-GHTDTVRGLSVMP-GVGIISASHDCTIRLWALT------- 218 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~~---------~~~~~~-~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~------- 218 (760)
.......++..+..|.+..+...+ ..+.+. ...+.|.++...+ +..++..+..|.++...++
T Consensus 646 ~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R 725 (800)
T TIGR01063 646 LTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSR 725 (800)
T ss_pred EeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCC
Confidence 333344577778888777765221 111111 1223344444333 3358888888988887641
Q ss_pred -CceEE--EeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 219 -GQVLM--EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 219 -~~~~~--~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.-+. .+......+..+....+. .++..+.+|.+..++
T Consensus 726 ~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 726 GGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTS 767 (800)
T ss_pred CCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEee
Confidence 11222 222223344444333333 556666677666665
No 484
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=4.7e+02 Score=32.38 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=42.6
Q ss_pred eecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 185 FVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 185 ~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+.-+...+.+..+........+..-+.+..|+.......... .+......+++ .++++-.||.+..||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~h~Dgs~~fWd 262 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY----LPNGQLESRDGSHFVSYHTDGSYAFWD 262 (993)
T ss_pred ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhc----ccccccCccCCceEEEEEecCCEEeee
Confidence 334556666666665666777777788888875443322211 11111116667 899999999999999
No 485
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=53.34 E-value=1.1e+02 Score=35.97 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=37.8
Q ss_pred cchHHHHHHHHhhcCCCCccHHHHHhh--HHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh
Q 004329 616 PANLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 675 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~~~~~~--~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~ 675 (760)
+..+.+++|+|.|+=.++..|..|.+. .+.+++.+ . +.+.+.-+-.+++|+|.-
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL----~--d~~~~~val~iLy~LS~d 400 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELL----K--DPNFREVALKILYNLSMD 400 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHh----C--CCchHHHHHHHHHHhccC
Confidence 345778999999998788888877763 45555554 2 234555566889999873
No 486
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=53.28 E-value=61 Score=37.96 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred HHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhc
Q 004329 619 LLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE 698 (760)
Q Consensus 619 ~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~ 698 (760)
.-+++++|-|+-.+......|.. ..++..+...+...|..+.+++.+++-++|++-..... -....++..+..++..
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~--~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~-m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVN--KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDE-MAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHcCCHHHHHHHhcC
Confidence 34678899999888877666644 56777777888888889999999999999998554211 1122233334445543
Q ss_pred cccchhHHHHHHHHHhhhcchhHHHH
Q 004329 699 ESIEVDSKYRALVAIGTLMLEGLVKK 724 (760)
Q Consensus 699 ~~~~~e~~~R~l~alGtl~~~~~~~~ 724 (760)
++.+.+-=.|-+|.||-++++++.
T Consensus 343 --~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 343 --ENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred --CCHHHHHHHHHHHHHhCcCHHHHH
Confidence 234555556677777777554443
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=51.70 E-value=46 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=13.0
Q ss_pred EEecCCeEEEEECCCeEEEEEC
Q 004329 118 VTLDNEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 118 l~~~~~~l~sgs~dg~v~vwd~ 139 (760)
+...++.++.++.||.+..+|.
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEET
T ss_pred CEEECCEEEEEcCCCEEEEEeC
Confidence 3455666777777777766654
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=50.55 E-value=61 Score=26.56 Aligned_cols=48 Identities=4% Similarity=-0.057 Sum_probs=28.5
Q ss_pred CcEEEEeCCceEEEEecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCC
Q 004329 250 RFAKIWKDGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 250 g~I~iwd~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~ 297 (760)
+.|..||.+++......-...+.|.++|+++ +++....+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3455555444433333334566778888877 45555578888887653
No 489
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=50.50 E-value=1.5e+02 Score=29.84 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=47.6
Q ss_pred CCCeEEEEEeCCCCCC--CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEE---Eec--CCeEEEEECCCeEEEE
Q 004329 65 TSFVGPLAWISPNEEF--PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGV---TLD--NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~--~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l---~~~--~~~l~sgs~dg~v~vw 137 (760)
...|+|++-......- ....++.|..+|.|.+.|.+.......+.-..-++.-. .|+ +-+++.++.||.|++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4578888765543322 23579999999999999998777777666444444211 222 3347788888877653
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=49.77 E-value=1.9e+02 Score=31.82 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=9.5
Q ss_pred EEEEECCCeEEEEeCC
Q 004329 33 IATSSRDRTVRFWSLD 48 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~ 48 (760)
.+.....|.|+.|+--
T Consensus 81 ~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 81 GLVKPKTGRVVFWESI 96 (422)
T ss_dssp EEEE-TT-EEEEES-T
T ss_pred EEEEcCCCCEEecccc
Confidence 4455668999999754
No 491
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=48.63 E-value=45 Score=38.80 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=64.4
Q ss_pred CEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 21 DVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 21 ~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
.+.++.+++.. +..|.-||++-.+--..+......+...+.....+|.+.+|..+ ++.++.+|.|.++...
T Consensus 583 ~v~~l~~ss~S-lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed--------~~was~gG~V~vi~~t 653 (925)
T KOG3522|consen 583 SVKLLLFSSGS-LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQED--------FVWASEGGCVHVIPST 653 (925)
T ss_pred hhhhhhccccc-cccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhc--------eeeeecCCceEEEech
Confidence 34444444332 55555666666554322211111123333445667888877654 6788899999999998
Q ss_pred CCceEEEEeC---CCccEEEEEecCCeEEEEECCCe-EEEEECC
Q 004329 101 SGEKVQTLQG---HKLQVTGVTLDNEDIVSSSVDST-LKRWRKG 140 (760)
Q Consensus 101 ~~~~~~~l~~---h~~~V~~l~~~~~~l~sgs~dg~-v~vwd~~ 140 (760)
+....+.+.. |...|+++.+.++.+..+-..|. ++.++.+
T Consensus 654 t~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 654 TFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTE 697 (925)
T ss_pred hccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccc
Confidence 7766655543 55678888887666544444444 4444443
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=48.52 E-value=3.4e+02 Score=28.26 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=106.7
Q ss_pred EEEEEeCCCeEEEEECCC--CceEEEEeCCCccEEEEEec--CCe-EEEEECCCeEEEEECCcee---------------
Q 004329 84 GLVSGGMDTMVLVWDLGS--GEKVQTLQGHKLQVTGVTLD--NED-IVSSSVDSTLKRWRKGKLV--------------- 143 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~--~~~~~~l~~h~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~~~~--------------- 143 (760)
+++.|+.+|...+. ... ++..+.+ +...|+++... .+. ++.++....++.+++....
T Consensus 15 ~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 15 WLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred EEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 68999998865554 543 2333332 45688888876 333 4444444559999763111
Q ss_pred --EEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCceEEeec----------CCCceEEEEEeCC---CeEEEE
Q 004329 144 --EFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCAQTFVG----------HTDTVRGLSVMPG---VGIISA 206 (760)
Q Consensus 144 --~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~~~~~~----------h~~~V~~l~~~~~---~~l~s~ 206 (760)
...-.|.............. ++++....+|.++...+..+.+.. ...++..+..+++ ..++.|
T Consensus 92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG 171 (302)
T smart00036 92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIG 171 (302)
T ss_pred cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEE
Confidence 11113333333333332222 455556667777643332222111 1123334433432 246666
Q ss_pred eCCCeEEEEecCCceE-------EE-eecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCC-ceE--EEEecCCcEEEEEE
Q 004329 207 SHDCTIRLWALTGQVL-------ME-MVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDG-VCV--QSIEHPGCVWDAKF 275 (760)
Q Consensus 207 s~dg~I~iwd~~~~~~-------~~-~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~-~~~--~~~~~~~~v~~v~~ 275 (760)
+..+...++++....+ .. .........++...+++.++.+-++..+.+=..| ... ..+.....+.++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~ 251 (302)
T smart00036 172 SDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNLYGKRRSRNPILHWEFMPESFAY 251 (302)
T ss_pred EcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEeCCCCccccceEEEcCCcccEEEE
Confidence 6643344444321100 00 0011102333444444544444444444443355 322 23456667778887
Q ss_pred ccCCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 276 LENGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 276 ~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.. ..+.+-.+..|.++++.+++...++.
T Consensus 252 ~~--pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 252 HS--PYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred EC--CEEEEEcCCcEEEEECCCCceEEEEe
Confidence 64 45555567779999999998766553
No 493
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=48.44 E-value=5.6e+02 Score=30.86 Aligned_cols=210 Identities=10% Similarity=0.023 Sum_probs=106.8
Q ss_pred EEEEEeCCCeEEEEECCCCce---------EEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC---c--------e
Q 004329 84 GLVSGGMDTMVLVWDLGSGEK---------VQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG---K--------L 142 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~---------~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~---~--------~ 142 (760)
.+++-+.+|.|+-.+..+... ...++....-...+..+ .+.++..+.+|.+...+.. . .
T Consensus 498 ~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~ 577 (800)
T TIGR01063 498 VVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP 577 (800)
T ss_pred EEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC
Confidence 578888999988776543211 11122222222222233 6668888888887766421 1 1
Q ss_pred e---EEeecCCcCeEEEEE---eCCCcEEEEECCCcEEEEeCCCc-------eE--EeecCCCceEEEEEe-CCCeEEEE
Q 004329 143 V---EFWEAHNAPIQTVIR---IPSGEIVSGSSDTTIKLWKGKKC-------AQ--TFVGHTDTVRGLSVM-PGVGIISA 206 (760)
Q Consensus 143 ~---~~~~~~~~~v~~v~~---~~~~~l~tgs~dg~i~iwd~~~~-------~~--~~~~h~~~V~~l~~~-~~~~l~s~ 206 (760)
+ ..+.....-+.++.. .++..++..+.+|.++-.+.... .. .+.. .+.+..+... .+..++..
T Consensus 578 i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~ 656 (800)
T TIGR01063 578 IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLG 656 (800)
T ss_pred HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEE
Confidence 1 112122222333443 22334889999999998763221 11 1222 3444444333 34457778
Q ss_pred eCCCeEEEEecC----------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-------C--CceEEEEe-
Q 004329 207 SHDCTIRLWALT----------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-------D--GVCVQSIE- 265 (760)
Q Consensus 207 s~dg~I~iwd~~----------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-------~--~~~~~~~~- 265 (760)
++.|.+..+... |.....+. ....|.++...+++ .++..+..|.++... . +..+..+.
T Consensus 657 Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl 735 (800)
T TIGR01063 657 SKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKI 735 (800)
T ss_pred ECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEc
Confidence 888887776631 22222222 22344444444444 788888889888775 1 22233332
Q ss_pred --cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 266 --HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 266 --~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
..+.+..+....+.. ++..+.+|.+..+..
T Consensus 736 ~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~ 768 (800)
T TIGR01063 736 TDRNGQVVGAIAVDDDDELMLITSAGKLIRTSV 768 (800)
T ss_pred cCCCCeEEEEEEecCCCeEEEEecCCeEEEeeH
Confidence 123444433333333 666677777666654
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=48.09 E-value=40 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=13.4
Q ss_pred CCcEEEEEcCCcEEEEeCC
Q 004329 278 NGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 278 ~g~lvt~~~dg~I~vw~~~ 296 (760)
++.++.++.||.++.+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 5557777788888888765
No 495
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.91 E-value=1.8e+02 Score=30.32 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=67.1
Q ss_pred cCCCchhhhhhcccc-hhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHH--HhhHHHHHHHhhhccCCCCc
Q 004329 583 LHPDGASLLLKHVEN-QNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWL--QKNRSEILDAFSSCYSSSNK 659 (760)
Q Consensus 583 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~--~~~~~~i~~~~~~~~~~~~k 659 (760)
-+|.....|...... ....+..++.. ...+ ...-+..++++++++......+..- ......+++.+.+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~fl~l-l~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~ 164 (312)
T PF03224_consen 87 DDPSRVELFLELAKQDDSDPYSPFLKL-LDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDS 164 (312)
T ss_dssp -SSSSHHHHHHHHH-TTH--HHHHHHH--S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCHHHHHHHHHhcccccchhHHHHHHH-hcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCc
Confidence 455555555421111 12255666653 3322 4566889999999998876665433 23345566666665544445
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHh-----hccccchhHHHHHHHHHhhhcchhHH
Q 004329 660 NVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIA-----EEESIEVDSKYRALVAIGTLMLEGLV 722 (760)
Q Consensus 660 ~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~-----~~~~~~~e~~~R~l~alGtl~~~~~~ 722 (760)
+++-.+..++-|+...-. -|..-.....+..+..++ ........-.|-++.++=.|-++++.
T Consensus 165 ~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~ 231 (312)
T PF03224_consen 165 ELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEI 231 (312)
T ss_dssp ---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHH
T ss_pred chHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHH
Confidence 565556666666642111 111001122333333444 22345678999999998888775533
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=46.64 E-value=77 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=20.7
Q ss_pred EeccCCCCEEEEEEcCCCe--EEEEECC--CeEEEE
Q 004329 14 ELRGHEDDVRGICVCDNVG--IATSSRD--RTVRFW 45 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~--l~tgs~D--g~i~iW 45 (760)
.+.-....-.+..|+|||+ +.++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444566778889999998 5555666 666665
No 497
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=45.91 E-value=2.2e+02 Score=31.12 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred CeEEEEecCCceEEEeecCC---CcEEEEEEeCCC----eEEEEeCCCcEEEEe-------CCceEEEEec---------
Q 004329 210 CTIRLWALTGQVLMEMVGHT---AIVYSIDSHASG----LIVSGSEDRFAKIWK-------DGVCVQSIEH--------- 266 (760)
Q Consensus 210 g~I~iwd~~~~~~~~~~~h~---~~v~~v~~~p~~----~l~s~s~Dg~I~iwd-------~~~~~~~~~~--------- 266 (760)
.++.+||+..+.+.+..... .....+.|..+- -++.+.-..+|..|- ..+.+-.+..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Q ss_pred ---------CCcEEEEEEccCCc-EEEEEc-CCcEEEEeCCC
Q 004329 267 ---------PGCVWDAKFLENGD-IVTACS-DGVTRIWTVHS 297 (760)
Q Consensus 267 ---------~~~v~~v~~~~~g~-lvt~~~-dg~I~vw~~~~ 297 (760)
+.-|+.+..|.|.+ |..++. +|.||.||+..
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
No 498
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=45.75 E-value=69 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHH
Q 004329 618 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILN 671 (760)
Q Consensus 618 ~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N 671 (760)
.+--+++.|.|+-.. ....+..+..+++..+...+..++..||.+++-.+=|
T Consensus 3 vR~~A~~aLg~l~~~--~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEG--CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTT--THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcc--cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 345677888884332 2334556778889888888877777899888766544
No 499
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.66 E-value=3.9e+02 Score=32.23 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=36.9
Q ss_pred EEEeCCC-eEEEEeCCCcEEEEe-CCceE--EEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 235 IDSHASG-LIVSGSEDRFAKIWK-DGVCV--QSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~--~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
|...+++ .++.| .|+...+-| .|... .++.......++.+ +..++.+-.++.|.||+..++.++.++
T Consensus 206 I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~--~~PYlIa~~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 206 IKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEVPLSVVV--ESPYLIALLDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred EEEecCCceEEEc-cCceEEEEecCCcccCCCceEecccchhhcc--cCceEEEEccccEEEEeccCHHHhhcc
Confidence 4444555 44444 566555555 44332 12222222222222 334777777889999999998776655
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=45.59 E-value=3.4e+02 Score=27.45 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=46.5
Q ss_pred cCCCcEEEEEE------eCCC--eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEE----Ec-cCCcEEEEEcCCcEE
Q 004329 227 GHTAIVYSIDS------HASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK----FL-ENGDIVTACSDGVTR 291 (760)
Q Consensus 227 ~h~~~v~~v~~------~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~----~~-~~g~lvt~~~dg~I~ 291 (760)
.+...|+|++. .++. .++.|.++|.|.|.| ....+..+..++....++ |. -|.++++++.||.|+
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence 45666676653 3455 899999999999999 446666677665322332 32 455699999999988
Q ss_pred EE
Q 004329 292 IW 293 (760)
Q Consensus 292 vw 293 (760)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
Done!