Query 004329
Match_columns 760
No_of_seqs 974 out of 2815
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pst_A Protein DOA1; protein d 100.0 4.2E-79 1.4E-83 635.1 25.3 383 316-753 23-424 (425)
2 3l3f_X Protein DOA1, DOA1/UFD3 100.0 1E-74 3.5E-79 594.8 23.6 343 360-753 1-361 (362)
3 3ebb_A Phospholipase A2-activa 100.0 1.7E-56 5.8E-61 457.6 23.7 284 454-757 19-304 (304)
4 3gae_A Protein DOA1; UFD3, CDC 100.0 3.2E-43 1.1E-47 350.8 17.8 237 484-753 2-252 (253)
5 1vyh_C Platelet-activating fac 100.0 7.1E-39 2.4E-43 351.7 41.5 276 11-296 100-410 (410)
6 1got_B GT-beta; complex (GTP-b 100.0 9.3E-38 3.2E-42 333.8 46.1 277 8-294 44-340 (340)
7 3ow8_A WD repeat-containing pr 100.0 7.3E-38 2.5E-42 331.7 41.6 278 10-295 23-319 (321)
8 1nr0_A Actin interacting prote 100.0 1.3E-37 4.3E-42 359.9 46.8 328 1-335 41-569 (611)
9 2ynn_A Coatomer subunit beta'; 100.0 2.7E-37 9.1E-42 324.8 43.3 281 8-298 2-303 (304)
10 3frx_A Guanine nucleotide-bind 100.0 2.9E-37 1E-41 326.8 41.5 285 7-298 5-318 (319)
11 2hes_X YDR267CP; beta-propelle 100.0 8.8E-37 3E-41 324.8 42.2 283 6-297 1-328 (330)
12 2ymu_A WD-40 repeat protein; u 100.0 4.1E-36 1.4E-40 344.7 50.1 337 2-352 205-558 (577)
13 3iz6_a 40S ribosomal protein R 100.0 6.6E-38 2.3E-42 340.4 33.0 288 2-299 49-377 (380)
14 2ymu_A WD-40 repeat protein; u 100.0 8E-36 2.7E-40 342.3 51.5 343 10-365 7-416 (577)
15 4aow_A Guanine nucleotide-bind 100.0 2E-36 6.9E-41 322.2 42.8 289 6-299 25-339 (340)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-36 3.5E-41 326.5 40.1 288 8-303 4-341 (345)
17 3odt_A Protein DOA1; ubiquitin 100.0 3E-36 1E-40 316.7 42.8 289 7-306 6-305 (313)
18 2pbi_B Guanine nucleotide-bind 100.0 5.8E-36 2E-40 321.7 44.3 276 9-294 54-354 (354)
19 2xzm_R RACK1; ribosome, transl 100.0 2.5E-36 8.5E-41 323.2 40.2 286 8-298 10-341 (343)
20 4g56_B MGC81050 protein; prote 100.0 9.2E-37 3.2E-41 328.3 35.1 277 15-298 38-344 (357)
21 1nr0_A Actin interacting prote 100.0 1.4E-35 4.6E-40 342.9 46.1 314 9-333 4-397 (611)
22 4gqb_B Methylosome protein 50; 100.0 3.2E-36 1.1E-40 321.9 36.1 278 16-300 27-334 (344)
23 4ery_A WD repeat-containing pr 100.0 1.1E-34 3.8E-39 305.7 42.1 280 7-296 11-311 (312)
24 1erj_A Transcriptional repress 100.0 5.9E-34 2E-38 310.8 41.7 269 17-297 62-389 (393)
25 3dm0_A Maltose-binding peripla 100.0 1.3E-33 4.3E-38 331.6 44.7 282 9-296 372-692 (694)
26 1gxr_A ESG1, transducin-like e 100.0 6.2E-33 2.1E-37 294.4 44.6 287 3-295 35-335 (337)
27 1vyh_C Platelet-activating fac 100.0 9.5E-34 3.2E-38 310.9 35.8 246 1-256 132-408 (410)
28 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-33 1.2E-37 349.5 43.8 358 1-367 639-1160(1249)
29 3zwl_B Eukaryotic translation 100.0 2.1E-32 7.1E-37 294.1 42.6 287 9-307 22-356 (369)
30 1r5m_A SIR4-interacting protei 100.0 2.3E-33 7.7E-38 307.8 35.4 350 3-364 29-424 (425)
31 4gqb_B Methylosome protein 50; 100.0 6.6E-33 2.3E-37 296.2 37.2 234 17-256 80-328 (344)
32 1sq9_A Antiviral protein SKI8; 100.0 6E-33 2.1E-37 302.4 36.9 285 9-299 6-397 (397)
33 1got_B GT-beta; complex (GTP-b 100.0 4.3E-32 1.5E-36 289.9 42.5 243 55-302 45-306 (340)
34 1r5m_A SIR4-interacting protei 100.0 1.8E-32 6.1E-37 300.7 38.4 268 18-296 107-424 (425)
35 3ei3_B DNA damage-binding prot 100.0 1.7E-32 5.9E-37 297.7 37.5 284 3-297 57-382 (383)
36 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-32 2.2E-36 323.1 45.8 280 9-298 3-303 (814)
37 2ynn_A Coatomer subunit beta'; 100.0 5.6E-32 1.9E-36 284.1 39.9 243 57-304 5-266 (304)
38 3sfz_A APAF-1, apoptotic pepti 100.0 1E-31 3.6E-36 336.3 48.8 347 11-367 607-1076(1249)
39 3ow8_A WD repeat-containing pr 100.0 1.9E-32 6.5E-37 290.0 35.6 245 2-256 61-318 (321)
40 3frx_A Guanine nucleotide-bind 100.0 7E-32 2.4E-36 285.5 39.2 289 55-365 7-317 (319)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-31 1E-35 294.3 45.7 283 4-304 103-398 (445)
42 4gga_A P55CDC, cell division c 100.0 2.2E-31 7.7E-36 293.0 43.0 273 21-302 107-400 (420)
43 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-31 1E-35 294.3 42.6 282 1-298 141-443 (445)
44 4e54_B DNA damage-binding prot 100.0 7.5E-33 2.6E-37 306.3 29.3 288 6-300 106-433 (435)
45 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4.3E-36 293.1 38.5 278 14-303 86-386 (401)
46 3v7d_B Cell division control p 100.0 8.9E-31 3E-35 291.9 45.5 279 10-303 112-427 (464)
47 3i2n_A WD repeat-containing pr 100.0 8.1E-32 2.8E-36 288.5 35.4 280 11-299 10-355 (357)
48 3k26_A Polycomb protein EED; W 100.0 6.1E-32 2.1E-36 290.3 34.2 286 9-296 7-365 (366)
49 4ggc_A P55CDC, cell division c 100.0 7.1E-31 2.4E-35 276.4 41.5 268 22-298 28-316 (318)
50 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-32 1.5E-36 292.5 32.9 276 15-299 4-363 (372)
51 2xzm_R RACK1; ribosome, transl 100.0 4.7E-31 1.6E-35 282.1 40.5 293 55-365 11-340 (343)
52 4a11_B DNA excision repair pro 100.0 2E-31 6.8E-36 290.8 36.8 298 3-305 27-373 (408)
53 1pgu_A Actin interacting prote 100.0 7E-31 2.4E-35 303.2 42.3 282 1-301 185-523 (615)
54 2pm7_B Protein transport prote 100.0 2.9E-31 9.9E-36 277.7 34.9 237 12-256 2-282 (297)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-31 1.7E-35 282.2 37.4 291 55-366 5-336 (345)
56 3v7d_B Cell division control p 100.0 1.2E-30 4E-35 291.0 40.7 284 1-294 144-460 (464)
57 4g56_B MGC81050 protein; prote 100.0 1.6E-31 5.5E-36 287.4 32.4 240 11-256 86-340 (357)
58 2hes_X YDR267CP; beta-propelle 100.0 3.4E-31 1.2E-35 281.6 34.4 251 1-256 36-325 (330)
59 3gre_A Serine/threonine-protei 100.0 6.4E-32 2.2E-36 298.7 29.8 281 4-294 48-437 (437)
60 2pbi_B Guanine nucleotide-bind 100.0 3.4E-30 1.2E-34 276.7 42.4 242 56-302 55-320 (354)
61 1gxr_A ESG1, transducin-like e 100.0 2.6E-31 8.9E-36 281.9 32.9 273 18-301 8-300 (337)
62 3dwl_C Actin-related protein 2 100.0 1E-32 3.4E-37 298.7 22.0 272 14-295 6-377 (377)
63 4aow_A Guanine nucleotide-bind 100.0 3.8E-30 1.3E-34 273.6 40.6 310 35-366 9-338 (340)
64 3iz6_a 40S ribosomal protein R 100.0 1.1E-31 3.7E-36 291.4 28.5 284 55-365 56-375 (380)
65 2pm9_A Protein WEB1, protein t 100.0 2.6E-32 9E-37 299.2 23.3 292 1-298 47-415 (416)
66 1pgu_A Actin interacting prote 100.0 1.6E-30 5.5E-35 300.1 39.2 314 8-332 3-365 (615)
67 1p22_A F-BOX/WD-repeat protein 100.0 2E-30 6.7E-35 286.9 37.8 268 15-302 129-419 (435)
68 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-30 1.1E-34 308.3 41.7 357 1-367 37-462 (814)
69 2pm9_A Protein WEB1, protein t 100.0 6.5E-32 2.2E-36 296.0 24.6 277 18-302 11-342 (416)
70 2j04_B YDR362CP, TAU91; beta p 100.0 6.8E-32 2.3E-36 303.4 25.0 292 2-299 186-519 (524)
71 3vl1_A 26S proteasome regulato 100.0 6.2E-31 2.1E-35 288.9 32.0 286 1-297 80-419 (420)
72 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-30 4.2E-35 313.0 36.8 296 1-302 81-610 (902)
73 3bg1_A Protein SEC13 homolog; 100.0 2.1E-31 7.2E-36 281.4 25.9 236 13-256 7-290 (316)
74 1erj_A Transcriptional repress 100.0 7.3E-30 2.5E-34 278.3 37.9 244 2-256 88-386 (393)
75 2pm7_B Protein transport prote 100.0 5.9E-30 2E-34 267.7 35.6 234 59-297 3-285 (297)
76 3vl1_A 26S proteasome regulato 100.0 4.3E-30 1.5E-34 282.2 33.8 266 22-299 59-367 (420)
77 3dm0_A Maltose-binding peripla 100.0 2.5E-29 8.6E-34 295.1 41.9 297 57-364 374-692 (694)
78 1yfq_A Cell cycle arrest prote 100.0 1.4E-29 4.9E-34 269.6 35.6 273 11-294 3-321 (342)
79 3mmy_A MRNA export factor; mRN 100.0 1.7E-29 5.9E-34 271.2 35.8 283 3-296 23-345 (368)
80 3odt_A Protein DOA1; ubiquitin 100.0 7.2E-29 2.5E-33 260.2 39.4 281 55-370 8-301 (313)
81 4ery_A WD repeat-containing pr 100.0 2.3E-28 7.9E-33 257.2 42.7 280 54-363 12-310 (312)
82 3dw8_B Serine/threonine-protei 100.0 1.2E-29 4.1E-34 280.9 33.2 274 18-296 27-445 (447)
83 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-30 5.1E-35 292.4 24.9 266 18-284 132-460 (524)
84 3bg1_A Protein SEC13 homolog; 100.0 5.4E-30 1.9E-34 270.5 26.5 233 59-296 7-292 (316)
85 4h5i_A Guanine nucleotide-exch 100.0 1.2E-28 4.3E-33 265.6 37.5 273 18-298 13-344 (365)
86 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-29 1.3E-33 265.8 33.0 285 12-302 4-342 (351)
87 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-27 4.6E-32 286.7 45.6 272 15-300 13-386 (902)
88 3jrp_A Fusion protein of prote 100.0 1.5E-28 5E-33 265.2 33.4 239 10-256 2-284 (379)
89 3zwl_B Eukaryotic translation 100.0 5.2E-27 1.8E-31 251.9 43.0 281 55-367 22-348 (369)
90 4gga_A P55CDC, cell division c 100.0 9.5E-28 3.3E-32 264.0 36.1 243 1-256 127-392 (420)
91 3k26_A Polycomb protein EED; W 100.0 1.6E-28 5.5E-33 263.5 28.0 245 1-256 46-363 (366)
92 3ei3_B DNA damage-binding prot 100.0 9.7E-28 3.3E-32 260.2 34.1 244 55-304 63-346 (383)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-28 7.4E-33 267.4 28.6 274 20-300 35-345 (402)
94 3dwl_C Actin-related protein 2 100.0 4.7E-29 1.6E-33 269.8 22.2 233 60-298 6-282 (377)
95 1k8k_C P40, ARP2/3 complex 41 100.0 9E-28 3.1E-32 258.7 32.0 248 1-256 32-358 (372)
96 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-28 1.7E-32 267.5 30.6 260 1-277 155-434 (435)
97 3jrp_A Fusion protein of prote 100.0 1.3E-27 4.6E-32 257.7 32.8 237 57-298 3-288 (379)
98 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-28 2.2E-32 259.0 29.8 279 3-299 3-338 (355)
99 2j04_A TAU60, YPL007P, hypothe 100.0 4E-29 1.4E-33 273.9 20.3 304 16-362 12-350 (588)
100 4aez_A CDC20, WD repeat-contai 100.0 3.6E-27 1.2E-31 257.7 35.8 250 1-263 115-386 (401)
101 3i2n_A WD repeat-containing pr 100.0 2.1E-27 7.3E-32 254.0 31.6 299 57-365 10-353 (357)
102 1sq9_A Antiviral protein SKI8; 100.0 1.5E-27 5.2E-32 259.6 30.3 251 1-256 38-392 (397)
103 2k89_A PLA2P, PLAP, phospholip 100.0 5.7E-30 1.9E-34 196.9 6.8 71 381-451 5-75 (80)
104 4ggc_A P55CDC, cell division c 100.0 2E-26 6.9E-31 242.3 36.4 244 1-256 47-312 (318)
105 3gre_A Serine/threonine-protei 100.0 4.7E-28 1.6E-32 267.7 24.1 280 7-305 5-367 (437)
106 3dw8_B Serine/threonine-protei 100.0 8.8E-27 3E-31 257.9 31.1 233 63-302 26-378 (447)
107 4e54_B DNA damage-binding prot 100.0 5.7E-27 1.9E-31 259.1 28.0 243 57-303 111-393 (435)
108 4a11_B DNA excision repair pro 100.0 2.1E-26 7.1E-31 251.0 32.1 286 1-296 68-404 (408)
109 3jro_A Fusion protein of prote 100.0 2.9E-27 9.8E-32 279.6 27.0 237 12-256 2-282 (753)
110 2xyi_A Probable histone-bindin 100.0 2.9E-26 1E-30 252.9 31.8 237 59-299 122-412 (430)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-25 4.8E-30 249.0 36.4 273 19-297 4-391 (450)
112 2xyi_A Probable histone-bindin 100.0 3.3E-26 1.1E-30 252.5 31.1 240 13-256 122-407 (430)
113 3bws_A Protein LP49; two-domai 99.9 1.8E-25 6.2E-30 246.4 35.7 289 2-297 104-432 (433)
114 1yfq_A Cell cycle arrest prote 99.9 9.6E-26 3.3E-30 239.9 31.1 237 60-303 6-288 (342)
115 2aq5_A Coronin-1A; WD40 repeat 99.9 4E-26 1.4E-30 249.4 27.6 250 1-256 59-339 (402)
116 3jro_A Fusion protein of prote 99.9 1.8E-26 6E-31 272.8 26.4 236 59-299 3-287 (753)
117 3vu4_A KMHSV2; beta-propeller 99.9 3.9E-25 1.3E-29 237.4 32.0 231 57-300 11-274 (355)
118 2j04_A TAU60, YPL007P, hypothe 99.9 1.2E-26 4.2E-31 254.3 19.4 220 13-257 46-295 (588)
119 4h5i_A Guanine nucleotide-exch 99.9 5.9E-26 2E-30 244.6 23.5 237 13-256 67-340 (365)
120 1l0q_A Surface layer protein; 99.9 2.1E-23 7.3E-28 226.4 43.2 261 33-306 5-284 (391)
121 3mmy_A MRNA export factor; mRN 99.9 6.7E-25 2.3E-29 235.3 28.2 244 1-256 66-343 (368)
122 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-24 5.5E-29 231.3 24.8 251 29-298 46-334 (343)
123 3f3f_A Nucleoporin SEH1; struc 99.9 5E-24 1.7E-28 226.0 27.4 251 1-256 35-334 (351)
124 4gq1_A NUP37; propeller, trans 99.9 8.3E-25 2.8E-29 238.2 21.5 264 18-295 88-387 (393)
125 1l0q_A Surface layer protein; 99.9 2.4E-22 8.3E-27 218.1 40.4 251 1-265 14-283 (391)
126 3bws_A Protein LP49; two-domai 99.9 1.1E-22 3.8E-27 224.0 37.0 313 18-364 59-431 (433)
127 2w18_A PALB2, fancn, partner a 99.9 2E-22 6.9E-27 207.9 36.1 278 7-295 23-355 (356)
128 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.4E-23 1.2E-27 229.8 31.3 228 17-256 100-388 (450)
129 3lrv_A PRE-mRNA-splicing facto 99.9 4.1E-23 1.4E-27 220.3 26.1 212 84-299 50-294 (343)
130 1nir_A Nitrite reductase; hemo 99.9 5.4E-21 1.8E-25 216.3 34.8 292 1-305 161-522 (543)
131 2w18_A PALB2, fancn, partner a 99.9 4.7E-21 1.6E-25 197.7 27.9 239 8-256 75-354 (356)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 5E-21 1.7E-25 209.7 29.4 266 1-279 95-409 (415)
133 4gq1_A NUP37; propeller, trans 99.9 6.6E-22 2.2E-26 215.3 20.8 232 2-256 114-386 (393)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-20 5.3E-25 205.8 26.8 277 18-299 61-389 (415)
135 1nir_A Nitrite reductase; hemo 99.9 4.7E-19 1.6E-23 200.4 38.0 312 26-367 144-516 (543)
136 1k32_A Tricorn protease; prote 99.8 4.5E-19 1.5E-23 217.3 35.4 340 1-356 35-484 (1045)
137 1k32_A Tricorn protease; prote 99.8 6.5E-19 2.2E-23 215.9 36.3 290 1-301 82-465 (1045)
138 2ecf_A Dipeptidyl peptidase IV 99.8 3.6E-18 1.2E-22 201.8 28.7 286 1-298 66-460 (741)
139 3u4y_A Uncharacterized protein 99.8 2.6E-17 9E-22 173.9 31.1 262 26-300 4-307 (331)
140 2z3z_A Dipeptidyl aminopeptida 99.8 5.3E-18 1.8E-22 199.1 28.3 284 3-299 47-437 (706)
141 2ecf_A Dipeptidyl peptidase IV 99.8 7.1E-18 2.4E-22 199.2 29.1 265 19-297 36-413 (741)
142 2ojh_A Uncharacterized protein 99.8 9.9E-18 3.4E-22 173.1 25.5 241 34-287 16-292 (297)
143 3vgz_A Uncharacterized protein 99.8 2.2E-16 7.5E-21 168.1 34.4 259 18-288 39-335 (353)
144 1ri6_A Putative isomerase YBHE 99.8 9.4E-17 3.2E-21 170.0 31.2 257 33-299 8-312 (343)
145 1pby_B Quinohemoprotein amine 99.8 5.2E-17 1.8E-21 171.5 25.9 258 33-305 4-318 (337)
146 1ri6_A Putative isomerase YBHE 99.8 1.9E-16 6.7E-21 167.5 29.2 266 2-279 18-334 (343)
147 2ojh_A Uncharacterized protein 99.8 2.7E-17 9.3E-22 169.7 21.7 236 1-250 24-293 (297)
148 2z3z_A Dipeptidyl aminopeptida 99.7 1.4E-16 4.8E-21 187.0 28.0 275 7-299 15-393 (706)
149 1jmx_B Amine dehydrogenase; ox 99.7 3.4E-16 1.2E-20 166.2 27.8 260 24-305 4-333 (349)
150 1xfd_A DIP, dipeptidyl aminope 99.7 9.7E-17 3.3E-21 188.8 25.6 291 1-300 39-446 (723)
151 3o4h_A Acylamino-acid-releasin 99.7 5E-17 1.7E-21 186.3 22.5 266 13-297 14-315 (582)
152 3u4y_A Uncharacterized protein 99.7 1.3E-15 4.4E-20 160.8 31.4 265 84-366 12-305 (331)
153 1xfd_A DIP, dipeptidyl aminope 99.7 7.1E-17 2.4E-21 190.0 20.7 266 21-298 18-394 (723)
154 3hfq_A Uncharacterized protein 99.7 4.6E-15 1.6E-19 157.8 32.2 247 2-256 21-314 (347)
155 3hfq_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 157.4 31.0 256 38-301 14-323 (347)
156 3vgz_A Uncharacterized protein 99.7 1.4E-14 4.6E-19 154.2 30.1 235 1-249 71-334 (353)
157 3scy_A Hypothetical bacterial 99.7 5.6E-14 1.9E-18 150.4 35.0 260 33-300 16-342 (361)
158 2oit_A Nucleoporin 214KDA; NH2 99.7 1E-15 3.6E-20 168.1 21.7 196 18-219 35-278 (434)
159 1pby_B Quinohemoprotein amine 99.7 4.9E-15 1.7E-19 156.2 25.8 246 1-265 13-318 (337)
160 2oit_A Nucleoporin 214KDA; NH2 99.7 6.1E-16 2.1E-20 170.0 19.1 199 92-298 23-279 (434)
161 3pe7_A Oligogalacturonate lyas 99.7 1.1E-14 3.7E-19 157.4 27.5 283 4-296 15-381 (388)
162 1z68_A Fibroblast activation p 99.7 1.9E-15 6.6E-20 177.7 20.5 289 1-302 38-448 (719)
163 3scy_A Hypothetical bacterial 99.6 1.5E-13 5.1E-18 147.0 32.0 265 3-276 33-360 (361)
164 1q7f_A NHL, brain tumor CG1071 99.6 7E-13 2.4E-17 136.8 34.1 230 63-298 27-281 (286)
165 1z68_A Fibroblast activation p 99.6 1.7E-14 5.9E-19 169.5 22.9 261 24-297 20-391 (719)
166 3o4h_A Acylamino-acid-releasin 99.6 2.4E-14 8.1E-19 164.0 22.5 225 65-301 21-278 (582)
167 1jmx_B Amine dehydrogenase; ox 99.6 2.6E-13 9E-18 143.7 25.0 244 1-267 23-335 (349)
168 1q7f_A NHL, brain tumor CG1071 99.6 2.1E-12 7.3E-17 133.1 30.2 226 17-256 27-277 (286)
169 2oiz_A Aromatic amine dehydrog 99.6 3.3E-13 1.1E-17 144.5 24.3 262 1-280 33-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.5 2.7E-13 9.3E-18 146.5 21.3 280 4-296 15-381 (396)
171 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.4E-12 8E-17 138.1 28.2 259 33-298 5-342 (365)
172 3fvz_A Peptidyl-glycine alpha- 99.5 1.1E-11 3.8E-16 130.8 32.6 227 65-297 23-322 (329)
173 2dg1_A DRP35, lactonase; beta 99.5 5.3E-12 1.8E-16 133.2 29.8 256 19-288 5-301 (333)
174 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.8E-12 6.1E-17 139.1 25.6 245 4-256 21-338 (365)
175 3pe7_A Oligogalacturonate lyas 99.5 1.2E-11 4.1E-16 133.3 30.7 239 57-300 22-332 (388)
176 2z2n_A Virginiamycin B lyase; 99.5 3.6E-10 1.2E-14 116.6 40.5 274 14-299 9-297 (299)
177 3azo_A Aminopeptidase; POP fam 99.5 5.1E-12 1.8E-16 146.8 28.7 275 14-300 18-372 (662)
178 2oiz_A Aromatic amine dehydrog 99.5 1.2E-11 4.2E-16 132.2 27.0 251 38-303 29-342 (361)
179 4a5s_A Dipeptidyl peptidase 4 99.5 5.4E-12 1.8E-16 148.6 25.6 291 1-303 38-455 (740)
180 4a5s_A Dipeptidyl peptidase 4 99.4 3.6E-12 1.2E-16 150.1 23.3 135 20-168 17-189 (740)
181 3fvz_A Peptidyl-glycine alpha- 99.4 1.7E-10 6E-15 121.5 33.5 227 19-256 23-319 (329)
182 2gop_A Trilobed protease; beta 99.4 1.3E-10 4.5E-15 123.0 30.3 248 20-296 15-330 (347)
183 3e5z_A Putative gluconolactona 99.4 2.7E-10 9.3E-15 117.9 31.9 236 58-301 20-290 (296)
184 3e5z_A Putative gluconolactona 99.4 9.8E-11 3.3E-15 121.3 28.5 228 11-252 19-280 (296)
185 2gop_A Trilobed protease; beta 99.4 6E-11 2.1E-15 125.7 27.0 228 2-256 46-328 (347)
186 3azo_A Aminopeptidase; POP fam 99.4 2.8E-11 9.6E-16 140.6 26.5 235 59-299 17-327 (662)
187 2dg1_A DRP35, lactonase; beta 99.4 2.5E-10 8.7E-15 120.2 31.3 230 10-249 35-300 (333)
188 1qks_A Cytochrome CD1 nitrite 99.4 1.7E-09 5.8E-14 121.8 39.5 293 1-305 179-546 (567)
189 2qc5_A Streptogramin B lactona 99.4 6.3E-09 2.1E-13 107.2 38.1 269 15-295 15-298 (300)
190 3hxj_A Pyrrolo-quinoline quino 99.4 2.9E-11 1E-15 127.1 20.4 279 1-298 42-325 (330)
191 3no2_A Uncharacterized protein 99.3 1.7E-10 5.9E-15 118.1 25.2 219 83-303 6-258 (276)
192 1rwi_B Serine/threonine-protei 99.3 2E-10 6.7E-15 116.9 24.5 229 67-300 25-267 (270)
193 3dsm_A Uncharacterized protein 99.3 9.3E-10 3.2E-14 115.9 29.2 258 3-275 21-319 (328)
194 2bkl_A Prolyl endopeptidase; m 99.3 6.1E-11 2.1E-15 138.5 21.9 229 17-256 118-394 (695)
195 3c5m_A Oligogalacturonate lyas 99.3 2.1E-10 7.2E-15 123.6 24.3 227 67-300 37-332 (396)
196 2xdw_A Prolyl endopeptidase; a 99.3 5.6E-10 1.9E-14 130.8 28.9 228 17-256 122-411 (710)
197 3hxj_A Pyrrolo-quinoline quino 99.3 1.4E-11 4.7E-16 129.6 13.6 282 3-302 3-288 (330)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.1E-09 1.1E-13 110.6 30.2 231 62-297 14-299 (314)
199 2xdw_A Prolyl endopeptidase; a 99.3 2.5E-09 8.5E-14 125.2 31.6 230 63-299 122-416 (710)
200 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.7E-09 9.1E-14 114.6 29.3 279 2-294 66-375 (376)
201 1rwi_B Serine/threonine-protei 99.3 7.6E-10 2.6E-14 112.5 23.7 224 21-256 25-261 (270)
202 3no2_A Uncharacterized protein 99.3 4E-09 1.4E-13 107.9 29.1 205 28-246 3-230 (276)
203 3dsm_A Uncharacterized protein 99.2 3.1E-09 1E-13 111.9 27.1 255 39-305 16-309 (328)
204 2bkl_A Prolyl endopeptidase; m 99.2 1.5E-09 5.2E-14 126.7 27.1 230 63-300 118-400 (695)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.3E-09 1.5E-13 109.5 27.6 233 16-256 14-296 (314)
206 2z2n_A Virginiamycin B lyase; 99.2 7.1E-08 2.4E-12 99.2 35.7 226 63-295 12-253 (299)
207 3sjl_D Methylamine dehydrogena 99.2 4.4E-09 1.5E-13 111.4 25.6 263 1-278 61-384 (386)
208 1qks_A Cytochrome CD1 nitrite 99.2 1.7E-07 5.9E-12 105.5 39.7 257 29-298 165-478 (567)
209 3g4e_A Regucalcin; six bladed 99.1 5.5E-08 1.9E-12 100.6 31.7 217 11-241 4-253 (297)
210 3sjl_D Methylamine dehydrogena 99.1 8.8E-09 3E-13 109.0 25.8 265 26-306 39-372 (386)
211 3g4e_A Regucalcin; six bladed 99.1 5.8E-08 2E-12 100.4 31.8 218 61-285 8-260 (297)
212 3hrp_A Uncharacterized protein 99.1 4.1E-08 1.4E-12 106.4 30.9 196 20-227 131-362 (409)
213 1yr2_A Prolyl oligopeptidase; 99.1 1E-08 3.5E-13 120.5 27.0 231 64-300 161-444 (741)
214 2mad_H Methylamine dehydrogena 99.1 2.7E-07 9.1E-12 98.6 35.3 259 27-303 28-356 (373)
215 3hrp_A Uncharacterized protein 99.1 3.9E-08 1.3E-12 106.7 28.4 222 66-295 131-408 (409)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.6E-08 2.6E-12 103.1 30.3 259 30-304 53-344 (376)
217 2mad_H Methylamine dehydrogena 99.1 2.6E-07 9E-12 98.7 34.0 249 1-264 49-357 (373)
218 4a2l_A BT_4663, two-component 99.1 1.6E-06 5.5E-11 102.7 43.7 271 18-300 213-529 (795)
219 1xip_A Nucleoporin NUP159; bet 99.1 3.4E-09 1.2E-13 112.6 18.5 166 67-245 39-230 (388)
220 1xip_A Nucleoporin NUP159; bet 99.1 4.7E-09 1.6E-13 111.5 19.2 172 21-206 39-230 (388)
221 2ghs_A AGR_C_1268P; regucalcin 99.1 1.2E-07 4.2E-12 99.4 30.1 207 20-241 49-283 (326)
222 1yr2_A Prolyl oligopeptidase; 99.1 8.1E-09 2.8E-13 121.5 23.3 226 18-256 161-438 (741)
223 2qc5_A Streptogramin B lactona 99.0 1.5E-06 5.2E-11 89.1 35.6 228 63-296 17-259 (300)
224 4a2l_A BT_4663, two-component 99.0 7.6E-07 2.6E-11 105.5 36.8 268 22-301 175-484 (795)
225 2ghs_A AGR_C_1268P; regucalcin 99.0 6.4E-07 2.2E-11 93.9 32.3 212 67-286 50-291 (326)
226 3dr2_A Exported gluconolactona 99.0 1.1E-07 3.6E-12 98.8 26.0 224 58-289 37-299 (305)
227 3v9f_A Two-component system se 99.0 2.5E-06 8.7E-11 100.7 40.8 274 19-300 210-527 (781)
228 3v9f_A Two-component system se 99.0 3.7E-06 1.3E-10 99.3 42.2 275 19-300 257-571 (781)
229 3c75_H MADH, methylamine dehyd 98.9 2.3E-07 7.8E-12 100.0 25.1 249 40-304 99-409 (426)
230 3dr2_A Exported gluconolactona 98.9 3.2E-07 1.1E-11 95.2 24.1 225 13-254 38-302 (305)
231 2qe8_A Uncharacterized protein 98.8 1.6E-07 5.4E-12 99.4 20.5 260 9-289 9-313 (343)
232 3c75_H MADH, methylamine dehyd 98.8 7.8E-07 2.7E-11 95.8 25.4 249 1-264 101-409 (426)
233 3iuj_A Prolyl endopeptidase; h 98.8 6.2E-07 2.1E-11 104.4 26.2 229 63-300 126-408 (693)
234 1mda_H Methylamine dehydrogena 98.8 3E-07 1E-11 97.4 21.2 253 33-306 35-355 (368)
235 1kb0_A Quinohemoprotein alcoho 98.8 9.2E-07 3.2E-11 102.2 26.3 264 30-305 77-515 (677)
236 1mda_H Methylamine dehydrogena 98.8 3E-07 1E-11 97.4 19.7 254 2-277 49-366 (368)
237 3iuj_A Prolyl endopeptidase; h 98.7 1.8E-06 6.1E-11 100.5 25.4 225 17-256 126-402 (693)
238 1yiq_A Quinohemoprotein alcoho 98.7 3.5E-06 1.2E-10 97.6 26.5 264 30-305 70-513 (689)
239 1kb0_A Quinohemoprotein alcoho 98.6 3.1E-06 1.1E-10 97.8 25.1 266 2-280 90-532 (677)
240 1yiq_A Quinohemoprotein alcoho 98.6 6.6E-06 2.3E-10 95.2 25.7 269 2-280 83-530 (689)
241 2qe8_A Uncharacterized protein 98.6 1.2E-06 4E-11 92.6 17.5 219 17-256 64-318 (343)
242 1npe_A Nidogen, entactin; glyc 98.5 0.00013 4.5E-09 73.5 31.5 242 33-280 4-263 (267)
243 2hz6_A Endoplasmic reticulum t 98.5 4.3E-08 1.5E-12 104.8 4.6 179 29-225 8-199 (369)
244 2xbg_A YCF48-like protein; pho 98.4 0.0013 4.4E-08 68.5 36.7 267 18-295 34-320 (327)
245 2hz6_A Endoplasmic reticulum t 98.4 2.3E-07 7.9E-12 99.1 5.6 190 83-280 10-216 (369)
246 2fp8_A Strictosidine synthase; 98.3 0.00029 1E-08 73.1 27.7 226 66-298 19-314 (322)
247 1kv9_A Type II quinohemoprotei 98.3 7.5E-05 2.6E-09 86.1 25.1 264 30-305 66-496 (668)
248 2iwa_A Glutamine cyclotransfer 98.2 0.00096 3.3E-08 66.6 27.2 198 8-218 8-236 (266)
249 1npe_A Nidogen, entactin; glyc 98.2 0.0014 4.8E-08 65.8 29.0 218 85-304 4-245 (267)
250 2ad6_A Methanol dehydrogenase 98.2 0.0005 1.7E-08 77.5 27.4 263 30-305 62-502 (571)
251 1w6s_A Methanol dehydrogenase 98.1 0.00097 3.3E-08 75.2 27.8 273 30-305 62-511 (599)
252 2fp8_A Strictosidine synthase; 98.1 0.0013 4.6E-08 68.1 26.9 229 16-256 15-310 (322)
253 1kv9_A Type II quinohemoprotei 98.0 0.00053 1.8E-08 78.9 24.9 267 2-280 79-513 (668)
254 2p4o_A Hypothetical protein; p 98.0 0.0093 3.2E-07 61.1 30.9 219 7-241 20-269 (306)
255 2ece_A 462AA long hypothetical 98.0 0.0024 8.3E-08 68.0 26.1 202 84-285 98-399 (462)
256 3nol_A Glutamine cyclotransfer 98.0 0.0039 1.3E-07 61.5 25.5 185 8-207 30-243 (262)
257 2ad6_A Methanol dehydrogenase 97.9 0.00072 2.5E-08 76.2 23.0 274 2-287 76-526 (571)
258 3ott_A Two-component system se 97.9 0.021 7.1E-07 66.8 36.5 263 19-296 145-447 (758)
259 2xbg_A YCF48-like protein; pho 97.9 0.011 3.6E-07 61.4 30.3 227 65-299 35-280 (327)
260 1flg_A Protein (quinoprotein e 97.9 0.0034 1.2E-07 70.8 27.5 101 2-109 81-201 (582)
261 1fwx_A Nitrous oxide reductase 97.9 0.00073 2.5E-08 74.6 20.3 307 29-363 99-506 (595)
262 1flg_A Protein (quinoprotein e 97.8 0.0044 1.5E-07 69.8 27.2 264 29-305 67-524 (582)
263 3mbr_X Glutamine cyclotransfer 97.8 0.018 6.2E-07 56.2 27.6 185 8-207 8-222 (243)
264 2ece_A 462AA long hypothetical 97.8 0.0034 1.2E-07 66.9 24.1 212 29-247 93-399 (462)
265 3nok_A Glutaminyl cyclase; bet 97.8 0.0065 2.2E-07 60.0 23.8 183 9-206 43-252 (268)
266 1w6s_A Methanol dehydrogenase 97.8 0.0076 2.6E-07 67.9 27.6 268 2-280 76-528 (599)
267 2iwa_A Glutamine cyclotransfer 97.8 0.0086 3E-07 59.6 25.0 183 66-256 21-234 (266)
268 3ott_A Two-component system se 97.8 0.055 1.9E-06 63.2 36.0 259 19-294 21-304 (758)
269 3nol_A Glutamine cyclotransfer 97.7 0.0086 2.9E-07 59.1 23.2 173 65-247 42-243 (262)
270 3v64_C Agrin; beta propeller, 97.7 0.079 2.7E-06 55.3 31.8 236 19-265 33-283 (349)
271 3nok_A Glutaminyl cyclase; bet 97.7 0.002 6.7E-08 63.7 17.8 197 191-400 56-264 (268)
272 1k3i_A Galactose oxidase precu 97.7 0.0046 1.6E-07 71.0 24.1 255 24-286 190-530 (656)
273 3v65_B Low-density lipoprotein 97.7 0.044 1.5E-06 58.2 30.1 232 23-265 80-326 (386)
274 1ijq_A LDL receptor, low-densi 97.6 0.083 2.8E-06 54.3 31.5 217 38-264 8-245 (316)
275 1ijq_A LDL receptor, low-densi 97.5 0.092 3.2E-06 53.9 29.8 210 91-302 9-243 (316)
276 3v64_C Agrin; beta propeller, 97.5 0.1 3.5E-06 54.4 29.4 198 20-226 73-283 (349)
277 3v65_B Low-density lipoprotein 97.5 0.066 2.3E-06 56.8 28.0 199 20-227 116-327 (386)
278 3qqz_A Putative uncharacterize 97.4 0.11 3.6E-06 51.4 27.2 193 59-256 20-250 (255)
279 3mbr_X Glutamine cyclotransfer 97.4 0.02 6.8E-07 55.9 21.5 200 190-402 21-235 (243)
280 3tc9_A Hypothetical hydrolase; 97.4 0.028 9.6E-07 60.7 25.1 223 67-296 138-429 (430)
281 2p4o_A Hypothetical protein; p 97.3 0.17 5.9E-06 51.5 29.9 193 104-300 24-244 (306)
282 3p5b_L Low density lipoprotein 97.3 0.24 8.1E-06 52.8 34.2 223 33-265 85-328 (400)
283 1fwx_A Nitrous oxide reductase 97.3 0.0088 3E-07 66.0 19.1 213 84-297 17-361 (595)
284 3sov_A LRP-6, low-density lipo 97.3 0.11 3.8E-06 53.4 26.4 213 90-302 11-243 (318)
285 2xzh_A Clathrin heavy chain 1; 97.1 0.27 9.3E-06 49.7 30.8 250 40-305 49-340 (365)
286 3sov_A LRP-6, low-density lipo 97.1 0.28 9.5E-06 50.4 27.4 221 37-265 10-246 (318)
287 3qqz_A Putative uncharacterize 97.1 0.24 8.4E-06 48.8 26.3 200 6-216 10-250 (255)
288 4hw6_A Hypothetical protein, I 97.1 0.087 3E-06 56.8 24.3 223 67-296 140-432 (433)
289 2ism_A Putative oxidoreductase 97.1 0.13 4.4E-06 53.8 24.9 106 20-129 31-152 (352)
290 3p5b_L Low density lipoprotein 97.1 0.42 1.4E-05 50.8 31.8 216 18-238 110-340 (400)
291 4hw6_A Hypothetical protein, I 96.9 0.15 5.3E-06 54.8 24.2 222 21-256 140-430 (433)
292 2xe4_A Oligopeptidase B; hydro 96.9 0.1 3.4E-06 60.8 24.2 226 67-299 175-460 (751)
293 3tc9_A Hypothetical hydrolase; 96.8 0.3 1E-05 52.5 25.4 222 21-256 138-427 (430)
294 2p9w_A MAL S 1 allergenic prot 96.8 0.22 7.4E-06 50.8 22.3 201 154-374 16-272 (334)
295 3m0c_C LDL receptor, low-densi 96.8 1.1 3.8E-05 52.0 31.3 214 33-256 397-629 (791)
296 1k3i_A Galactose oxidase precu 96.7 0.036 1.2E-06 63.6 18.5 237 3-248 223-530 (656)
297 3ei3_A DNA damage-binding prot 96.7 1.9 6.3E-05 52.4 34.8 272 19-301 553-917 (1158)
298 3m0c_C LDL receptor, low-densi 96.6 0.97 3.3E-05 52.4 29.1 211 89-301 401-636 (791)
299 4a0p_A LRP6, LRP-6, low-densit 96.6 1.4 4.9E-05 49.7 31.3 212 37-256 12-234 (628)
300 2xe4_A Oligopeptidase B; hydro 96.6 0.17 5.7E-06 58.9 22.6 185 21-217 175-398 (751)
301 3kya_A Putative phosphatase; s 96.5 0.79 2.7E-05 49.7 26.0 229 68-302 141-480 (496)
302 3sre_A PON1, serum paraoxonase 96.4 1 3.5E-05 46.7 24.9 107 171-280 203-326 (355)
303 2ism_A Putative oxidoreductase 96.3 1.2 4.3E-05 46.1 27.7 211 65-286 30-333 (352)
304 4a0p_A LRP6, LRP-6, low-densit 96.3 2.1 7.1E-05 48.3 30.3 192 20-220 37-239 (628)
305 3ei3_A DNA damage-binding prot 96.2 3.3 0.00011 50.2 36.5 214 21-241 515-748 (1158)
306 3amr_A 3-phytase; beta-propell 96.2 1.1 3.8E-05 46.0 23.6 131 164-296 43-209 (355)
307 1bpo_A Protein (clathrin); cla 96.0 1.9 6.6E-05 45.4 33.5 227 70-304 70-338 (494)
308 4db6_A Armadillo repeat protei 95.9 0.043 1.5E-06 52.3 10.8 150 602-757 56-207 (210)
309 2p9w_A MAL S 1 allergenic prot 95.8 0.65 2.2E-05 47.3 19.5 145 112-256 12-212 (334)
310 3a9g_A Putative uncharacterize 95.7 2.3 8E-05 44.1 28.2 146 19-169 28-216 (354)
311 4db8_A Armadillo-repeat protei 95.7 0.045 1.5E-06 54.0 10.4 147 602-754 98-246 (252)
312 3s94_A LRP-6, low-density lipo 95.7 2.3 7.9E-05 47.9 25.6 213 88-301 14-247 (619)
313 3amr_A 3-phytase; beta-propell 95.6 1.9 6.5E-05 44.3 22.1 134 170-304 98-271 (355)
314 1n7d_A LDL receptor, low-densi 95.5 0.029 9.8E-07 64.7 9.3 218 38-265 384-622 (699)
315 4hxt_A De novo protein OR329; 95.3 0.12 4.1E-06 50.5 12.0 137 615-755 99-237 (252)
316 1n7d_A LDL receptor, low-densi 95.3 0.042 1.4E-06 63.3 9.7 202 20-226 406-622 (699)
317 3now_A UNC-45 protein, SD10334 95.1 0.08 2.7E-06 61.1 10.9 139 616-757 637-780 (810)
318 1xi4_A Clathrin heavy chain; a 94.8 1.8 6.2E-05 52.5 21.3 226 71-304 71-338 (1630)
319 3a9g_A Putative uncharacterize 94.8 4.5 0.00015 41.8 28.1 215 64-286 27-330 (354)
320 4hxt_A De novo protein OR329; 94.7 0.25 8.6E-06 48.2 12.5 111 602-718 46-157 (252)
321 3kya_A Putative phosphatase; s 94.7 5.9 0.0002 42.9 26.3 224 21-256 140-472 (496)
322 4db8_A Armadillo-repeat protei 94.6 0.35 1.2E-05 47.3 13.1 112 601-718 55-167 (252)
323 1tl2_A L10, protein (tachylect 94.5 1.5 5.3E-05 41.6 16.2 169 33-212 7-203 (236)
324 3sre_A PON1, serum paraoxonase 94.4 3.1 0.00011 43.0 20.1 144 154-297 53-252 (355)
325 3pbp_A Nucleoporin NUP82; beta 94.2 3.2 0.00011 43.6 19.3 103 152-255 67-208 (452)
326 3pbp_A Nucleoporin NUP82; beta 93.8 3.3 0.00011 43.5 18.5 124 169-293 39-208 (452)
327 2be1_A Serine/threonine-protei 93.7 0.32 1.1E-05 50.1 10.8 103 83-185 11-135 (339)
328 3s94_A LRP-6, low-density lipo 93.2 13 0.00045 41.6 32.3 148 151-298 349-511 (619)
329 3qhy_B Beta-lactamase inhibito 92.7 3 0.0001 41.6 16.2 214 20-256 24-243 (282)
330 4db6_A Armadillo repeat protei 92.3 0.7 2.4E-05 43.6 10.4 100 615-718 25-125 (210)
331 1tl2_A L10, protein (tachylect 92.2 5.8 0.0002 37.7 16.0 144 20-173 41-203 (236)
332 3qhy_B Beta-lactamase inhibito 91.3 6.8 0.00023 39.0 16.9 214 67-298 25-247 (282)
333 2xn4_A Kelch-like protein 2; s 91.3 12 0.0004 37.3 19.0 212 84-299 18-278 (302)
334 1cru_A Protein (soluble quinop 91.0 18 0.00063 38.6 21.0 98 150-247 26-162 (454)
335 2vpj_A Kelch-like protein 12; 88.7 20 0.00068 35.5 21.1 143 30-181 62-232 (301)
336 3das_A Putative oxidoreductase 88.6 24 0.00081 36.2 27.6 84 13-101 25-116 (347)
337 2xn4_A Kelch-like protein 2; s 88.2 22 0.00074 35.2 18.9 102 30-141 61-182 (302)
338 3ii7_A Kelch-like protein 7; p 88.1 22 0.00075 35.3 19.5 212 84-299 14-274 (306)
339 4b8j_A Importin subunit alpha- 87.7 2.8 9.7E-05 46.0 11.8 100 616-719 300-401 (528)
340 2vpj_A Kelch-like protein 12; 87.5 23 0.0008 34.9 21.4 211 33-256 18-275 (301)
341 2be1_A Serine/threonine-protei 87.4 1.2 4.2E-05 45.7 7.8 180 122-302 10-236 (339)
342 1bpo_A Protein (clathrin); cla 86.8 34 0.0012 36.1 29.2 187 27-226 73-297 (494)
343 2g8s_A Glucose/sorbosone dehyd 86.8 30 0.001 35.4 26.6 223 66-295 18-350 (353)
344 4b8j_A Importin subunit alpha- 86.5 2.6 9E-05 46.3 10.7 137 615-755 342-492 (528)
345 2xzh_A Clathrin heavy chain 1; 86.2 31 0.0011 34.9 30.0 214 27-253 74-326 (365)
346 1xqr_A HSPBP1 protein; armadil 86.2 5.9 0.0002 39.7 12.1 100 616-719 139-239 (296)
347 2g8s_A Glucose/sorbosone dehyd 85.5 35 0.0012 34.9 27.4 217 20-244 18-337 (353)
348 3b7f_A Glycosyl hydrolase, BNR 85.1 38 0.0013 35.1 26.3 201 83-285 23-297 (394)
349 3b7f_A Glycosyl hydrolase, BNR 85.1 38 0.0013 35.0 29.8 208 30-246 22-296 (394)
350 1xi4_A Clathrin heavy chain; a 84.9 18 0.00063 44.0 16.9 184 28-224 74-295 (1630)
351 3ul1_B Importin subunit alpha- 84.9 3.6 0.00012 45.1 10.6 99 616-718 288-387 (510)
352 1zgk_A Kelch-like ECH-associat 83.8 32 0.0011 34.2 16.7 140 30-181 70-241 (308)
353 3ii7_A Kelch-like protein 7; p 83.4 37 0.0013 33.5 20.3 211 33-256 15-269 (306)
354 1xqr_A HSPBP1 protein; armadil 83.3 11 0.00036 37.9 12.4 135 573-718 59-196 (296)
355 3tpo_A Importin subunit alpha- 83.3 5.2 0.00018 44.0 11.2 99 616-718 307-406 (529)
356 3opb_A SWI5-dependent HO expre 81.5 0.91 3.1E-05 51.6 4.0 99 617-717 621-727 (778)
357 1wa5_B Importin alpha subunit; 81.2 5.2 0.00018 43.9 10.2 100 615-718 228-328 (530)
358 2z6h_A Catenin beta-1, beta-ca 80.0 5.2 0.00018 45.2 9.8 137 616-755 367-523 (644)
359 2jdq_A Importin alpha-1 subuni 79.6 24 0.00082 37.1 14.7 100 615-718 247-347 (450)
360 1wa5_B Importin alpha subunit; 79.5 11 0.00039 41.1 12.2 100 615-718 186-286 (530)
361 3tpo_A Importin subunit alpha- 79.5 4.9 0.00017 44.2 9.1 95 621-718 228-322 (529)
362 3nmw_A APC variant protein; AR 79.5 13 0.00045 38.3 11.8 190 556-754 129-329 (354)
363 3sbq_A Nitrous-oxide reductase 78.8 57 0.0019 35.6 16.3 172 191-362 324-550 (638)
364 4asc_A Kelch repeat and BTB do 78.6 55 0.0019 32.5 18.7 98 33-141 8-126 (315)
365 3ul1_B Importin subunit alpha- 77.2 3.7 0.00013 45.0 7.2 95 621-718 209-303 (510)
366 1xm9_A Plakophilin 1; armadill 76.9 22 0.00075 38.0 13.2 120 602-728 46-182 (457)
367 3l6x_A Catenin delta-1; cateni 76.8 37 0.0013 37.4 15.0 140 616-757 323-474 (584)
368 2jdq_A Importin alpha-1 subuni 75.7 25 0.00087 37.0 13.4 152 555-718 65-221 (450)
369 2z6g_A B-catenin; FULL-length, 75.1 17 0.00058 42.1 12.4 113 601-718 193-305 (780)
370 1xm9_A Plakophilin 1; armadill 74.4 8.6 0.00029 41.3 9.1 140 616-757 298-447 (457)
371 1cru_A Protein (soluble quinop 73.3 1E+02 0.0034 32.8 20.2 64 9-76 17-87 (454)
372 4asc_A Kelch repeat and BTB do 73.2 75 0.0026 31.4 19.1 88 92-181 117-222 (315)
373 3nmw_A APC variant protein; AR 72.9 31 0.0011 35.4 12.6 100 617-718 99-200 (354)
374 3tt9_A Plakophilin-2; cell adh 72.8 7.6 0.00026 37.3 7.3 114 602-718 10-124 (233)
375 2zwa_A Leucine carboxyl methyl 72.3 1E+02 0.0034 34.9 17.8 173 84-256 400-632 (695)
376 3nmz_A APC variant protein; pr 72.1 14 0.00049 39.5 10.0 135 617-754 302-445 (458)
377 2z6g_A B-catenin; FULL-length, 71.3 23 0.00078 41.0 12.2 100 615-718 163-263 (780)
378 2z6h_A Catenin beta-1, beta-ca 71.1 20 0.0007 40.2 11.6 100 615-718 27-127 (644)
379 1zgk_A Kelch-like ECH-associat 70.4 86 0.0029 30.9 18.0 103 29-141 23-146 (308)
380 1suu_A DNA gyrase subunit A; t 69.3 96 0.0033 31.0 19.1 138 158-297 55-231 (312)
381 2uvk_A YJHT; unknown function, 68.1 1E+02 0.0036 30.9 17.3 58 84-141 22-95 (357)
382 4gq2_M Nucleoporin NUP120; bet 66.9 91 0.0031 36.8 16.3 36 230-265 236-274 (950)
383 3now_A UNC-45 protein, SD10334 65.9 24 0.00084 40.6 10.7 95 620-718 599-694 (810)
384 4fdd_A Transportin-1; heat rep 64.7 81 0.0028 36.6 15.4 100 615-718 372-471 (852)
385 2woz_A Kelch repeat and BTB do 64.7 1.1E+02 0.0039 30.1 18.5 16 356-371 278-293 (318)
386 1jdh_A Beta-catenin; beta-cate 64.4 36 0.0012 36.8 11.6 100 615-718 30-130 (529)
387 1jdh_A Beta-catenin; beta-cate 63.7 55 0.0019 35.2 13.0 100 615-718 73-172 (529)
388 3nmz_A APC variant protein; pr 61.2 53 0.0018 35.0 11.7 101 617-718 215-316 (458)
389 3s25_A Hypothetical 7-bladed b 60.6 1.4E+02 0.0046 29.7 18.7 173 91-280 36-235 (302)
390 3l6x_A Catenin delta-1; cateni 57.8 51 0.0018 36.3 11.1 112 602-718 50-163 (584)
391 2uvk_A YJHT; unknown function, 56.8 1.6E+02 0.0056 29.4 16.0 94 30-131 19-128 (357)
392 2zwa_A Leucine carboxyl methyl 55.8 55 0.0019 37.1 11.4 67 30-103 500-579 (695)
393 3das_A Putative oxidoreductase 55.4 1.8E+02 0.0062 29.5 30.3 221 59-286 25-326 (347)
394 2qk1_A Protein STU2; STU2P, XM 55.1 62 0.0021 31.1 10.2 99 616-718 75-175 (249)
395 4gq2_M Nucleoporin NUP120; bet 53.5 49 0.0017 39.1 10.8 39 66-109 236-274 (950)
396 2agh_C Zinc finger protein HRX 51.3 15 0.0005 21.5 2.7 14 437-450 10-23 (31)
397 3tt9_A Plakophilin-2; cell adh 44.0 1.3E+02 0.0044 28.6 10.2 68 649-718 12-81 (233)
398 3b2a_A TON_1937, putative unch 44.0 1.3E+02 0.0043 28.8 9.5 95 619-718 113-218 (265)
399 3no0_A DNA gyrase subunit A; D 43.8 2.4E+02 0.0081 27.5 17.1 133 162-296 81-245 (276)
400 2woz_A Kelch repeat and BTB do 42.5 2.5E+02 0.0086 27.4 19.4 58 84-141 112-184 (318)
401 3opb_A SWI5-dependent HO expre 42.3 1.5E+02 0.0052 33.7 11.8 97 619-718 576-683 (778)
402 2qk2_A LP04448P; mini spindles 42.2 1.5E+02 0.005 27.9 10.6 88 619-717 74-161 (242)
403 3fbl_A Putative uncharacterize 40.1 21 0.00072 25.4 2.8 27 419-445 55-81 (82)
404 1w63_A Adapter-related protein 36.3 4.7E+02 0.016 28.7 17.3 98 569-675 67-172 (618)
405 3mvd_K Regulator of chromosome 35.8 3.8E+02 0.013 27.6 32.5 109 20-138 75-204 (423)
406 2vgl_B AP-2 complex subunit be 35.0 1.1E+02 0.0037 33.8 9.3 92 614-718 98-189 (591)
407 4fhn_B Nucleoporin NUP120; pro 34.1 68 0.0023 38.8 8.0 37 68-109 240-276 (1139)
408 1suu_A DNA gyrase subunit A; t 32.9 3.7E+02 0.013 26.5 22.8 170 84-256 10-228 (312)
409 3uc1_A DNA gyrase subunit A; D 29.8 4.3E+02 0.015 26.3 20.6 216 33-256 6-276 (327)
410 2wg3_C Hedgehog-interacting pr 29.6 5.2E+02 0.018 27.2 14.8 109 142-250 5-160 (463)
411 4fhn_B Nucleoporin NUP120; pro 27.7 72 0.0025 38.6 6.6 38 269-306 239-277 (1139)
412 2qk1_A Protein STU2; STU2P, XM 25.6 1E+02 0.0034 29.6 6.1 74 643-718 144-220 (249)
413 2zux_A YESW protein; beta-prop 25.2 6.8E+02 0.023 27.2 24.6 189 93-297 293-532 (591)
414 4gmo_A Putative uncharacterize 25.2 83 0.0028 35.5 6.2 70 603-675 37-106 (684)
415 2vgl_A Adaptor protein complex 24.8 6E+02 0.02 27.9 13.2 54 614-675 123-178 (621)
416 3mvd_K Regulator of chromosome 23.1 6.2E+02 0.021 25.9 35.2 212 84-299 86-376 (423)
417 3f7f_A Nucleoporin NUP120; nuc 23.1 1.8E+02 0.0062 32.7 8.1 37 269-306 223-259 (729)
418 3ltj_A Alpharep-4; protein eng 22.1 3.8E+02 0.013 23.7 9.4 79 615-718 89-167 (201)
419 2bpt_A Importin beta-1 subunit 22.1 6.4E+02 0.022 28.5 13.4 99 616-718 383-482 (861)
420 1qgr_A Protein (importin beta 21.4 5.6E+02 0.019 29.1 12.7 100 615-718 379-479 (876)
421 1te4_A Conserved protein MTH18 20.9 3.2E+02 0.011 22.5 7.9 78 614-716 54-131 (131)
422 1zvt_A Topoisomerase IV subuni 20.8 5.5E+02 0.019 24.4 12.0 98 200-297 44-163 (256)
423 2qk2_A LP04448P; mini spindles 20.7 5E+02 0.017 24.0 11.3 106 601-718 99-205 (242)
No 1
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=100.00 E-value=4.2e-79 Score=635.14 Aligned_cols=383 Identities=26% Similarity=0.420 Sum_probs=249.3
Q ss_pred eEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCC-ceEEEEEeccccceeeccceeeCC-CCCCCcccccCccce
Q 004329 316 YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD-NGVAYSWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYD 393 (760)
Q Consensus 316 ~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~-~~~~~~w~~~~~~W~~~g~~~~~~-~~~~~~~~~~g~~yd 393 (760)
+.+..++. +++ +||.+.+..+|++||+++++++++ ...+|+|+ .++|.++|+|+++. +++.+|+.|+|++||
T Consensus 23 sai~~q~v-~i~---lp~~e~l~~~G~~~Gq~~~v~~~~g~v~ay~ws--~~~W~~iG~Vv~~~~~~~~~k~~~~Gk~YD 96 (425)
T 3pst_A 23 SMTGGQQM-GRG---SSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96 (425)
T ss_dssp ---------------------------------------------------------------------CCEEETTEEES
T ss_pred cccchhhc-CCC---CCCHHHhcCCCCCCCeEEEEECCCCCEEEEEEc--CCceeEEeEEecCCCCCCCCceeecCcccc
Confidence 44455555 343 999999999999999999999865 44599999 58999999999863 445689999999999
Q ss_pred EEEEeecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 004329 394 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPS 473 (760)
Q Consensus 394 ~vf~vdi~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~~~~~~ 473 (760)
|||+|||++|+|++|||||.+||||++||+||++|+||++|+|||++||++|+++++.+ +|+++ +.|.+.
T Consensus 97 yvf~Vdi~~g~p~lkLpyN~~~np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~~~~~~------~p~~~---~~~~~~- 166 (425)
T 3pst_A 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLD------QPNDN---ASSSAV- 166 (425)
T ss_dssp EEEEECCSTTCCCEEEEECTTCCHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC---------------------------
T ss_pred eEEEEEcCCCCccccCCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcccC------CCCCC---CCCCCC-
Confidence 99999999999999999999999999999999999999999999999999999987543 35543 223221
Q ss_pred CCCCCCCCCCcceeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhccCCccCCCCch
Q 004329 474 SMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFAD 553 (760)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~~~~~~~~~~~~ 553 (760)
+.++.+.++|||+++|++|+++|+++|++||+|||++. .+|+|+|+..|.+++..++... .
T Consensus 167 ---~~~~~~~~k~lP~~~yl~f~~~n~~~i~~kl~efN~~~--------~~ls~~el~~l~~~l~~~~~~~--------~ 227 (425)
T 3pst_A 167 ---SPSKTSVMKVLPVKQYLIMENYNPDTILNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------E 227 (425)
T ss_dssp ---------CCSSCCCCCCCCCCCCCHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHTSGGGSH--------H
T ss_pred ---CcccCCCCcccCccceeeeecCCHHHHHHHHHHhcccc--------cCCCHHHHHHHHHHhccccccH--------H
Confidence 12244568999999999999999999999999999872 4799999999999876443111 1
Q ss_pred hhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCC
Q 004329 554 VDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS 633 (760)
Q Consensus 554 ~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~ 633 (760)
..+..+.+++.+|| .+||+|||+||+++||++++.+ ..++..+.. +..++|+||++|++||||.++
T Consensus 228 ~l~~~~~kil~~WP--~~FPaLDLLRl~v~~p~~~~~l-----------~~li~~~l~-~~~~an~MltlR~laNlF~~~ 293 (425)
T 3pst_A 228 LLLSFANTIRSNWE--IKTPAYDIVRLIVKKLPYSSDI-----------KDYIEEGLG-NKNITLTMLTVRILVNCFNNE 293 (425)
T ss_dssp HHHHHHHHHHHHCS--CCHHHHHHHHHHGGGCSCGGGG-----------HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC--cccHHHHHHHHHHcCCchHHHH-----------HHHHHHhcC-CCChhHHHHHHHHHHHhcCCc
Confidence 23344568899999 5999999999999999986643 345555544 446789999999999999999
Q ss_pred cc-HHHHHhh--HHHHHHHhhhcc----CCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhh-----c--c
Q 004329 634 SW-YSWLQKN--RSEILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE-----E--E 699 (760)
Q Consensus 634 ~~-~~~~~~~--~~~i~~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~-----~--~ 699 (760)
.+ ++++..+ ++.+++.+...+ ...+||+|+|+|||+||||+++++.+.+ .++++.+.+++. . +
T Consensus 294 ~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~ 370 (425)
T 3pst_A 294 NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEY 370 (425)
T ss_dssp TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHH
T ss_pred chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccc
Confidence 95 5555333 677888776543 3358999999999999999999986643 455555666555 2 2
Q ss_pred ccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh--cCChhHHHHHHHH
Q 004329 700 SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI 753 (760)
Q Consensus 700 ~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ei 753 (760)
++|+||+||+|||||||++ +++++++++.. .+++++++ +.|+||+++++||
T Consensus 371 ~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~---~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 371 QECEEAAYRLTVAYGNLATVEPTLRQFANSV---TWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp HTSHHHHHHHHHHHHHHHHHCHHHHHHHTTC---HHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHHhcCH---HHHHHHHHhcccchHHHHHHHhc
Confidence 4689999999999999999 77899988854 46666654 5789999999998
No 2
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-74 Score=594.85 Aligned_cols=343 Identities=26% Similarity=0.443 Sum_probs=248.2
Q ss_pred EEeccccceeeccceeeCC-CCCCCcccccCccceEEEEeecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHH
Q 004329 360 SWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQI 438 (760)
Q Consensus 360 ~w~~~~~~W~~~g~~~~~~-~~~~~~~~~~g~~yd~vf~vdi~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i 438 (760)
+|+ +++|.++|+|+++. +++.+|+.|+|++|||||+|||+||+|++|||||.+||||++||+||++|+||++|+|||
T Consensus 1 qw~--~~~W~~iG~vv~~~~~~~~~k~~~~g~~yDyvf~vdi~~g~~~~klpyN~~~np~~~A~~F~~~~~l~~~y~~~i 78 (362)
T 3l3f_X 1 QFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQV 78 (362)
T ss_dssp ------------------------CCEEETTEEESEEEEECCSTTSCCEEEEECTTSCHHHHHHHHHHHTTCCGGGHHHH
T ss_pred CCC--CCcceEeEEEECCCCCCCCCceeecCcccceEEEEEcCCCCccccCCCcCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 577 78999999999873 455789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCcceeccCCceeeeccChHHHHHHHHHHHHhhcccc
Q 004329 439 VEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 518 (760)
Q Consensus 439 ~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~~~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~ 518 (760)
++||++|++|++.+ +|+++ +.|.+. +.++.+.++|||+++|++|+++|+++|++||+|||++.
T Consensus 79 ~~fi~~n~~~~~~~------~p~~~---~~~~~~----~~~~~~~~k~lP~~~yl~f~~~n~~~i~~kl~efN~~~---- 141 (362)
T 3l3f_X 79 VQFILKNTNGISLD------QPNDN---ASSSAV----SPSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKINSNE---- 141 (362)
T ss_dssp HHHHHHHCC-------------------------------------CSCCCCCCCCCCCCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHhcCCCcccC------CCCCC---CCCCCC----CCCCCCCCCcCCccceeeeccCCHHHHHHHHHHHcccc----
Confidence 99999999987543 35543 123221 12244568999999999999999999999999999872
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhccCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccch
Q 004329 519 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQ 598 (760)
Q Consensus 519 ~~~~~~l~~~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~ 598 (760)
.+|+|+|+..|.+++..++. -....+..+.+++.+|| .+||+|||+||+++||++++++.
T Consensus 142 ----~~ls~~el~~l~~~l~~~~~--------~~~~l~~~~~~i~~~Wp--~~FP~LDLLRl~v~~~~~~~~l~------ 201 (362)
T 3l3f_X 142 ----KTFDDEILAQIGGALHDIDE--------SWELLLSFANTIRSNWE--IKTPAYDIVRLIVKKLPYSSDIK------ 201 (362)
T ss_dssp ----CCSCHHHHHHHHHHHTCTTT--------CHHHHHHHHHHHHHHCS--CCHHHHHHHHHHGGGCSCGGGGH------
T ss_pred ----cCCCHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHhhCC--ccchHHHHHHHHhcCCChHHHHH------
Confidence 47999999999998763321 11223445668899999 49999999999999999876543
Q ss_pred hHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCcc-HHHHHhh--HHHHHHHhhhcc----CCCCchhHHHHHHHHHH
Q 004329 599 NDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKN--RSEILDAFSSCY----SSSNKNVQLSYSTLILN 671 (760)
Q Consensus 599 ~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~-~~~~~~~--~~~i~~~~~~~~----~~~~k~~~~a~atl~~N 671 (760)
.++..+.. +..++|+||++|++||||.|+.+ ++++..+ ++.+++.+...+ ...|||+|+|+|||+||
T Consensus 202 -----~li~~~~~-~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lN 275 (362)
T 3l3f_X 202 -----DYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFN 275 (362)
T ss_dssp -----HHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHhcC-CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHH
Confidence 35555544 44679999999999999999995 5555443 567777775543 34589999999999999
Q ss_pred HHhhhhhcCCchhhhhHHHHHHHHhh-----cc--ccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh--c
Q 004329 672 YAVLLIEKKDEEGQSHVLSAALEIAE-----EE--SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA--S 741 (760)
Q Consensus 672 ~s~~~~~~~~~~~~~~ll~~~~~~~~-----~~--~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~--~ 741 (760)
||+++++.+.+ .++++.+.+++. .| ++|+||+||+|||||||++ ++++++.++.. .+++++++ +
T Consensus 276 lAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~~---~~~~~~~~~~~ 349 (362)
T 3l3f_X 276 YSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSV---TWLANIKRSYG 349 (362)
T ss_dssp HHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGGC---HHHHHHHHHHT
T ss_pred HHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCH---HHHHHHHHhcc
Confidence 99999986543 455555556555 22 4689999999999999999 77888888864 46666654 5
Q ss_pred CChhHHHHHHHH
Q 004329 742 KETKIAEVGADI 753 (760)
Q Consensus 742 ~~~~~~~~~~ei 753 (760)
.|+||+++++||
T Consensus 350 ~e~R~~~v~~ei 361 (362)
T 3l3f_X 350 NVPRFKDIFDDL 361 (362)
T ss_dssp TSHHHHHHHHHT
T ss_pred cchHHHHHHHhc
Confidence 789999999997
No 3
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-56 Score=457.56 Aligned_cols=284 Identities=25% Similarity=0.370 Sum_probs=230.4
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCCCCcceeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHH
Q 004329 454 NTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRV 533 (760)
Q Consensus 454 ~~~~~~p~~~~~~y~~~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l 533 (760)
++.++|||||++||+||+.++ .++|||+++|++|+++|+++|++||+|||+++. .+.+|+|+|+..|
T Consensus 19 ~~~~~Dp~~~~~~y~p~~~~~--------~~k~~P~~~yl~f~~an~~~i~~KL~EfN~~~~-----~~~~Ls~~el~~L 85 (304)
T 3ebb_A 19 SMAGVDPFTGNSAYRSAASKT--------MNIYFPKKEAVTFDQANPTQILGKLKELNGTAP-----EEKKLTEDDLILL 85 (304)
T ss_dssp -----------------------------CCSSCCCCSCCCCCCCCHHHHHHHHHHHHTTSC-----GGGCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCCCCCC--------CCCcCCCccceehhccCHHHHHHHHHHHHHccc-----cccCcCHHHHHHH
Confidence 344889999999999998432 479999999999999999999999999999853 3578999999999
Q ss_pred HHHHHHhhccCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCC
Q 004329 534 AAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNP 613 (760)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 613 (760)
++++..|++++ ++.+...+++++.|++ +||.+.+||+|||+|++++||+++++|+. +..+..++..++... .++
T Consensus 86 ~~l~~~l~~~s---~~~~~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~-~~~~~~l~~~l~~~~-~~~ 159 (304)
T 3ebb_A 86 EKILSLICNSS---SEKPTVQQLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCN-EKEGAQFSSHLINLL-NPK 159 (304)
T ss_dssp HHHHHHHHTTC---SSCCCHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHS-TTTHHHHHHHHHHTT-CTT
T ss_pred HHHHHHHhccC---CCccchHHHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhc-cccchHHHHHHHHhc-CCC
Confidence 99999998664 3456777899999998 99999999999999999999999999972 333444454565543 445
Q ss_pred CCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 614 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 614 ~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
..|+|+||++|++||||.++.+++++++++++|++.+..++.+.|||+|+|+|||+||||+++++.+..++..++++++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 56889999999999999999999999999999999999998888999999999999999999999887777777777777
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA 757 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ei~~ll 757 (760)
+++. +++|+|++||+|+|||||++ +++++++|+.+++.++++++++ ++++||++|++.|+.+|
T Consensus 240 ~il~-~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 240 TILE-VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHT-TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHh-ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 7665 56789999999999999999 8899999999999999988887 47899999999998764
No 4
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-43 Score=350.76 Aligned_cols=237 Identities=20% Similarity=0.264 Sum_probs=184.8
Q ss_pred cceeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhccCCccCCCCchhhHHHHHHHH
Q 004329 484 FKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL 563 (760)
Q Consensus 484 ~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l 563 (760)
+||||+++|++|+++|+++|++||+|||++. .+|+|+|+..|++++..++.+. ...+..+.+++
T Consensus 2 ~k~lP~~~yl~f~~~n~~~i~~Kl~efN~~~--------~~ls~~el~~l~~~l~~l~~~~--------~~~~~~~~ki~ 65 (253)
T 3gae_A 2 MKVLPVKQYLIMENYNPDTIFNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------ELLLSFANTIR 65 (253)
T ss_dssp CSSCSCCSCCCCCCCCHHHHHHHHHHHHHHH--------CCSCHHHHHHHHHHHTCHHHHH--------HHHHHHHHHHH
T ss_pred CcccCCcceeeeecCCHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHhcccccH--------HHHHHHHHHHH
Confidence 5899999999999999999999999999873 3799999999999887553211 12344566899
Q ss_pred hcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCc-cHHHHHhh
Q 004329 564 KTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQKN 642 (760)
Q Consensus 564 ~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~-~~~~~~~~ 642 (760)
.+|| .+||+|||+|++++||++++.++ .++..+.+ +..|+|+||++|++||||.|+. |++++.++
T Consensus 66 ~~WP--~~fP~lDllRl~~~~~~~~~~l~-----------~~l~~~~~-~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~ 131 (253)
T 3gae_A 66 SNWE--IKTPAYDIVRLIVKKLPYSSDIK-----------DYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESN 131 (253)
T ss_dssp HHCS--CCHHHHHHHHHHGGGCSCGGGGH-----------HHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH
T ss_pred HhCC--ccchHHHHHHHHHcCCchHHHHH-----------HHHHHhcC-CCchhHHHHHHHHHHHcccCCchHHHHHhcc
Confidence 9999 79999999999999999877664 24444444 3467899999999999999999 78888776
Q ss_pred --HHHHHHHhhhccC----CCCchhHHHHHHHHHHHHhhhhhcCC-chhhhhHHHHHHHHhhcc---ccchhHHHHHHHH
Q 004329 643 --RSEILDAFSSCYS----SSNKNVQLSYSTLILNYAVLLIEKKD-EEGQSHVLSAALEIAEEE---SIEVDSKYRALVA 712 (760)
Q Consensus 643 --~~~i~~~~~~~~~----~~~k~~~~a~atl~~N~s~~~~~~~~-~~~~~~ll~~~~~~~~~~---~~~~e~~~R~l~a 712 (760)
++++++.+.+.+. +.|||+|+|+||++||||+++++.+. .+....++.++.+++..+ ++|+||+||+|||
T Consensus 132 ~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvA 211 (253)
T 3gae_A 132 QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVA 211 (253)
T ss_dssp HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 6677777766542 35899999999999999999998654 222233333333322112 4588999999999
Q ss_pred Hhhhcc-hhHHHHHhhccChHHHHHHHhh--cCChhHHHHHHHH
Q 004329 713 IGTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI 753 (760)
Q Consensus 713 lGtl~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ei 753 (760)
||||++ +++++++|+.. .+++++++ +.|+||+++++||
T Consensus 212 lGtL~~~~~~~~~~a~~~---~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 212 YGNLATVEPTLRQFANSV---TWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp HHHHHHHSGGGGCCTTTC---HHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHhccH---HHHHHHHHHcccchHHHHHHHhc
Confidence 999999 77888888864 46666653 4789999999998
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-39 Score=351.70 Aligned_cols=276 Identities=28% Similarity=0.505 Sum_probs=250.3
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
....+.+|.+.|++++|+|++. |++|+.||+|++||+.+++ ....+.+|...|.+++|+|++. ++++|+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~-----~l~sgs 169 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGK-----LLASCS 169 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSS-----EEEEEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCC-----EEEEEe
Confidence 3567889999999999999988 9999999999999998776 5677889999999999999887 799999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
.||+|++||+.+++++..+.+|...|.+++|+ ++.+++|+.|++|++||.. .++..+.+|...|.++.+++++. +
T Consensus 170 ~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 99999999999999999999999999999997 5679999999999999974 67788999999999999999988 7
Q ss_pred EEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCC---------------------CeEEEEeCCCeEEEEec-CCc
Q 004329 165 VSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPG---------------------VGIISASHDCTIRLWAL-TGQ 220 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~---------------------~~l~s~s~dg~I~iwd~-~~~ 220 (760)
++|+.|+.|++||.. .+...+.+|...|.+++|+|+ ..+++|+.|++|++||+ ++.
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 899999999999954 456678899999999999984 34999999999999997 477
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
++..+.+|...|.+++|+|++ +|++|+.|++|++|| .+.++..+. |...|++++|+|++. +++|+.||.|++|++
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 888999999999999999999 999999999999999 666777776 888999999999998 999999999999986
Q ss_pred C
Q 004329 296 H 296 (760)
Q Consensus 296 ~ 296 (760)
+
T Consensus 410 r 410 (410)
T 1vyh_C 410 R 410 (410)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.3e-38 Score=333.81 Aligned_cols=277 Identities=23% Similarity=0.406 Sum_probs=244.9
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
..+...+|.+|.+.|++++|+|++. |++|+.||+|++||..++. ....+..|...|.+++|+|++. +++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~-----~l~ 113 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGN-----YVA 113 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSS-----EEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCC-----EEE
Confidence 3567789999999999999999998 9999999999999998665 5667788999999999999987 799
Q ss_pred EEeCCCeEEEEECCCC----ceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEe
Q 004329 87 SGGMDTMVLVWDLGSG----EKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~ 159 (760)
+|+.|+.|++|++.++ +....+.+|...|.++.|. ++.+++++.|++|++||.. +....+.+|...|.+++|+
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 9999999999999875 3566788999999999997 7779999999999999974 6777888999999999999
Q ss_pred CCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEee--cCCCcE
Q 004329 160 PSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMV--GHTAIV 232 (760)
Q Consensus 160 ~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~--~h~~~v 232 (760)
|++. +++|+.|+.|++||.+ .+...+.+|...|.+++|+|++. +++++.||+|++||+.. +.+..+. .+...|
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 9987 7899999999999965 46678889999999999999766 99999999999999864 4444443 233579
Q ss_pred EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 233 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 233 ~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
.+++|+|++ ++++|+.|+.|++|| .+..+..+. |.+.|++++|+|+|. +++|+.||.|++||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999 999999999999999 566666665 888999999999998 99999999999996
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-38 Score=331.71 Aligned_cols=278 Identities=21% Similarity=0.364 Sum_probs=247.2
Q ss_pred eEeEEeccCCCCEEEEEEcCC----Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 10 QLSSELRGHEDDVRGICVCDN----VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~----~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
.+.+.+++|.+.|++++|+++ +. |+||+.|++|++|++.++. ......+.+|...|.+++|++++. +
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~---~~~~~~l~gh~~~v~~~~~~~~~~-----~ 94 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER---LDLQWSLEGHQLGVVSVDISHTLP-----I 94 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECSSSS-----E
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC---eeeeeeeccCCCCEEEEEECCCCC-----E
Confidence 455778899999999999874 34 9999999999999987443 334556889999999999999887 6
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeC
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~ 160 (760)
+++++.|++|++||+.+++.+..+..|...+.+++|+ +..+++|+.||.+++|+.. +....+..|...|.+++|+|
T Consensus 95 l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT
T ss_pred EEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC
Confidence 9999999999999999999999999999999999997 5679999999999999875 66677788999999999999
Q ss_pred CCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEE
Q 004329 161 SGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSI 235 (760)
Q Consensus 161 ~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v 235 (760)
++. +++|+.||.|++||.. +....+.+|..+|++++|+|++. +++++.|++|++||+. ++....+.+|...|.++
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 254 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE
Confidence 988 7899999999999965 45667889999999999999776 9999999999999974 67788889999999999
Q ss_pred EEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 236 DSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
+|+|++ +|++++.|++|++|| .++++..+. |.+.|++++|+|+|. +++++.||.|++||.
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999 999999999999999 677887775 888999999999998 899999999999996
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-37 Score=359.91 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=252.9
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEe------------------
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL------------------ 61 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~------------------ 61 (760)
|+.||+.+.+...+|.+|.+.|++++|+|+|+ |++|+.||+|+|||+.++... ....+
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCCCE
Confidence 35789888899999999999999999999999 999999999999998644311 11223
Q ss_pred --------------------------eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE
Q 004329 62 --------------------------LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV 115 (760)
Q Consensus 62 --------------------------~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V 115 (760)
.+|...|++++|+|++.. .+++|+.|++|++||..++++...+.+|...|
T Consensus 118 l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~----~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V 193 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF----RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 193 (611)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC----EEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe----EEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence 345555666666655432 59999999999999999999999999999999
Q ss_pred EEEEec--CCeEEEEECCCeEEEEECC--ceeEEee-------cCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCc--
Q 004329 116 TGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWE-------AHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC-- 181 (760)
Q Consensus 116 ~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~-------~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~-- 181 (760)
.+++|+ +..+++|+.|++|++||.. +....+. +|...|.+++|+|++. +++++.|++|++||....
T Consensus 194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 999997 5669999999999999964 5566663 7999999999999987 889999999999996531
Q ss_pred e-------------------------------------------EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec
Q 004329 182 A-------------------------------------------QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL 217 (760)
Q Consensus 182 ~-------------------------------------------~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~ 217 (760)
. ..+.+|...|++++|+|++. +++++.|++|++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 1 23457999999999999776 999999999999997
Q ss_pred CCc-eEEEe-e---------------------------------------------------------------------
Q 004329 218 TGQ-VLMEM-V--------------------------------------------------------------------- 226 (760)
Q Consensus 218 ~~~-~~~~~-~--------------------------------------------------------------------- 226 (760)
... ....+ .
T Consensus 354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence 432 11110 0
Q ss_pred ------------cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCce--EEEEecCCcEEEEEEccCCc-EEEEEcCC
Q 004329 227 ------------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC--VQSIEHPGCVWDAKFLENGD-IVTACSDG 288 (760)
Q Consensus 227 ------------~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~--~~~~~~~~~v~~v~~~~~g~-lvt~~~dg 288 (760)
.|...+.+++|+|+| ++++|+.|++|++|| .+.. .....|...|++++|+|+|+ +++++.|+
T Consensus 434 v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCC
Confidence 123456788899999 999999999999998 3322 34456888999999999998 88888899
Q ss_pred cEEEEeCCC-Ceeechhhh---hhh----hhcc-cceEEeccccCceeeecCCCCc
Q 004329 289 VTRIWTVHS-DKVADSLEL---EAY----ASEL-SQYKLCRKKVGGLKLEDLPGLE 335 (760)
Q Consensus 289 ~I~vw~~~~-~~~~~~~~~---~~~----~~~~-~~~~~~~~~~g~i~~~~l~~~~ 335 (760)
.|++|++.+ ++....... ... ..+. .+..+.+..++.+++|++....
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999887 554332111 111 1111 2455667778899999987543
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-37 Score=324.80 Aligned_cols=281 Identities=22% Similarity=0.336 Sum_probs=245.2
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
++++.++|.+|.+.|++++|+|++. |++|+.||+|++||+.++. ....+..|...|.+++|+|++. +++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~-----~l~ 71 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKN-----WII 71 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----EEE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCC-----EEE
Confidence 3567889999999999999999999 9999999999999998654 5677889999999999999987 799
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCC
Q 004329 87 SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~ 161 (760)
+|+.|+.|++||+.+++.+..+.+|...|.+++|+ +..+++|+.||+|++||.. .....+.+|...|.+++|+|+
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 99999999999999999999999999999999997 5569999999999999975 345678899999999999994
Q ss_pred -Cc-EEEEECCCcEEEEeCCCc--eEEe-ecCCCceEEEEEeC--CC-eEEEEeCCCeEEEEecC-CceEEEeecCCCcE
Q 004329 162 -GE-IVSGSSDTTIKLWKGKKC--AQTF-VGHTDTVRGLSVMP--GV-GIISASHDCTIRLWALT-GQVLMEMVGHTAIV 232 (760)
Q Consensus 162 -~~-l~tgs~dg~i~iwd~~~~--~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v 232 (760)
+. +++|+.|++|++||.+.. ...+ .+|...+..+.++| ++ .+++++.|++|++||+. ++++..+.+|...|
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence 44 889999999999996542 2333 45778899999987 44 49999999999999974 67888999999999
Q ss_pred EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCC
Q 004329 233 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 233 ~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~ 298 (760)
.+++|+|++ .|++|+.||+|++|| .+++.+.+. |...+++++|+|++. +++++.|..+.+|++...
T Consensus 232 ~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 999999999 999999999999999 677888886 667999999999886 466666777888887653
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-37 Score=326.83 Aligned_cols=285 Identities=24% Similarity=0.412 Sum_probs=242.9
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCC-e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNV-G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~-~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
+.+.+..+|.||.+.|++++|+|++ . |+||+.|++|++|++.........+...+.+|...|.+++|+|++. +
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-----~ 79 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-----Y 79 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-----E
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-----E
Confidence 4578889999999999999999865 4 9999999999999987443323345677899999999999999987 7
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEEeCC
Q 004329 85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~ 161 (760)
+++|+.|++|++||+.+++.+..+.+|...|.+++|+ +..+++|+.|++|++||.. .+...+.+|...|.++.+.|.
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence 9999999999999999999999999999999999997 5679999999999999985 677788899999999999985
Q ss_pred C-------cEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeecCCC
Q 004329 162 G-------EIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVGHTA 230 (760)
Q Consensus 162 ~-------~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~ 230 (760)
+ .+++++.|+.|++||... ....+.+|...|.+++|+|++. +++++.||+|++||+.. +.+..+. +..
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~ 238 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQD 238 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CCS
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC
Confidence 3 388999999999999765 4557789999999999999776 99999999999999864 4555554 557
Q ss_pred cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe---------cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 231 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~---------~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
.|.+++|+|++ ++++++. +.+++|+ ....+..+. |...+.+++|+|+|+ +++|+.||.|++|++.+
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 89999999999 6666664 5599999 444444443 355799999999999 89999999999999876
Q ss_pred C
Q 004329 298 D 298 (760)
Q Consensus 298 ~ 298 (760)
+
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-37 Score=324.81 Aligned_cols=283 Identities=24% Similarity=0.419 Sum_probs=230.2
Q ss_pred CCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEe-eC-CCCCeEEEEEeCCCCCCCCc
Q 004329 6 FKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKIL-LG-HTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 6 ~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~~~~~~~~~ 83 (760)
|.++++.++|.+|.+.|.+++|+++ .|++|+.|++|++||+.++. ......+ .+ |...|.+++|+|++.
T Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~---~~~~~~~~~~~h~~~v~~v~~sp~~~----- 71 (330)
T 2hes_X 1 MASINLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDD---FTLIDVLDETAHKKAIRSVAWRPHTS----- 71 (330)
T ss_dssp --CCEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSC---CEEEEEECTTCCCSCEEEEEECTTSS-----
T ss_pred CcccccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCC---eEEEEEEecCCccCCEEEEEECCCCC-----
Confidence 3567889999999999999999988 89999999999999998543 2233444 34 999999999999987
Q ss_pred EEEEEeCCCeEEEEECCC-------CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC------ceeEEeec
Q 004329 84 GLVSGGMDTMVLVWDLGS-------GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG------KLVEFWEA 148 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~------~~~~~~~~ 148 (760)
+|++|+.|++|++||+.. .++...+.+|...|.+++|+ +.+|++|+.|++|++||.. +++..+.+
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 799999999999999853 35677889999999999997 5679999999999999983 34667889
Q ss_pred CCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC----CceEEeecCCCceEEEEEeCC--C-eEEEEeCCCeEEEEecCC-
Q 004329 149 HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK----KCAQTFVGHTDTVRGLSVMPG--V-GIISASHDCTIRLWALTG- 219 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~----~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~I~iwd~~~- 219 (760)
|...|.++.|+|++. +++|+.|++|++||.. .+...+.+|...|.+++|+|+ + .+++++.|++|++||+..
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 999999999999987 8899999999999853 356788899999999999996 4 389999999999999743
Q ss_pred --------ceEEEeec-CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCc--eEEEE--ecCC-cEEEEEEcc--CCc-
Q 004329 220 --------QVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGV--CVQSI--EHPG-CVWDAKFLE--NGD- 280 (760)
Q Consensus 220 --------~~~~~~~~-h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~--~~~~~--~~~~-~v~~v~~~~--~g~- 280 (760)
.+...+.+ |...|++++|++++.+++++.||.|++|| .+. ..... .|.. .|++++|+| ++.
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred CccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 23444444 89999999999888999999999999999 442 23232 3666 899999999 566
Q ss_pred EEEEEcCCcEEEEeCCC
Q 004329 281 IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 281 lvt~~~dg~I~vw~~~~ 297 (760)
+++|+.||.|++|++++
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 89999999999999865
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-36 Score=344.70 Aligned_cols=337 Identities=29% Similarity=0.478 Sum_probs=283.9
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..||. +.++...+.+|...|++++|+|++. |++++.|+.|++||.. ++ ....+.+|...|.+++|+|++.
T Consensus 205 ~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~-----~~~~~~~~~~~v~~v~~~~d~~-- 275 (577)
T 2ymu_A 205 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHSSSVNGVAFRPDGQ-- 275 (577)
T ss_dssp EEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SC-----EEEEECCCSSCEEEEEECTTSS--
T ss_pred EEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-----EEEEEecCCCCEEEEEEcCCCC--
Confidence 46774 5678889999999999999999998 9999999999999975 33 5667889999999999999987
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~ 157 (760)
.+++++.|+.|++||. +++....+.+|...|.+++++ +..+++++.||+|++||.. .....+..|...+.+++
T Consensus 276 ---~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~ 351 (577)
T 2ymu_A 276 ---TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA 351 (577)
T ss_dssp ---EEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred ---EEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEE
Confidence 6999999999999996 467888899999999999997 5569999999999999975 56677889999999999
Q ss_pred EeCCCc-EEEEECCCcEEEEeC-CCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEE
Q 004329 158 RIPSGE-IVSGSSDTTIKLWKG-KKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYS 234 (760)
Q Consensus 158 ~~~~~~-l~tgs~dg~i~iwd~-~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~ 234 (760)
++|++. +++|+.|+.+++||. .+....+.+|...|++++|+|++. +++++.|+.|++||.+++.+..+.+|...|++
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEE
Confidence 999988 789999999999994 456778889999999999999876 99999999999999999999999999999999
Q ss_pred EEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhh-h
Q 004329 235 IDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA-Y 309 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~-~ 309 (760)
++|+|++ ++++++.|+.|++|| .+..+..+. |...|++++|+|+|+ +++++.|+.|++|+. +++....+.... .
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~ 510 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 510 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC
Confidence 9999999 999999999999999 667776665 888999999999999 889999999999996 455554443211 1
Q ss_pred h----hcc-cceEEeccccCceeeecCCCCceeeccCCCcceEEEEee
Q 004329 310 A----SEL-SQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 352 (760)
Q Consensus 310 ~----~~~-~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~ 352 (760)
. .+. .+..+.+..++.+++|+.++.......||.+....+..+
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEc
Confidence 1 111 244556777889999998776555555665544444433
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.6e-38 Score=340.41 Aligned_cols=288 Identities=22% Similarity=0.382 Sum_probs=248.2
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
..|+..+..+.++|.||.+.|++++|+|++. |+||+.||+|++||..++. ....+..|...|.+++|+|++.
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~-- 121 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQ-- 121 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSS--
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCC--
Confidence 3577778889999999999999999999998 9999999999999998665 5677889999999999999987
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc-------eEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEe--
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGE-------KVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFW-- 146 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~-------~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~-- 146 (760)
++++|+.|+.+++||+.+.. ....+.+|...|.++.|. +..+++|+.|++|++||.. +.+..+
T Consensus 122 ---~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 122 ---SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp ---EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred ---EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 79999999999999996532 345678999999999986 3459999999999999975 455555
Q ss_pred ---ecCCcCeEEEEEeC-CCc-EEEEECCCcEEEEeCC---CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec
Q 004329 147 ---EAHNAPIQTVIRIP-SGE-IVSGSSDTTIKLWKGK---KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL 217 (760)
Q Consensus 147 ---~~~~~~v~~v~~~~-~~~-l~tgs~dg~i~iwd~~---~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~ 217 (760)
.+|...|.++.+.+ ++. +++|+.|++|++||.+ .....+.+|...|.+++|+|++. +++++.||+|++||+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence 57899999999987 554 8899999999999965 56778899999999999999766 999999999999997
Q ss_pred C-CceEEEeecCC-------CcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE-----ecCCcEEEEEEccCCc-
Q 004329 218 T-GQVLMEMVGHT-------AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI-----EHPGCVWDAKFLENGD- 280 (760)
Q Consensus 218 ~-~~~~~~~~~h~-------~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~-----~~~~~v~~v~~~~~g~- 280 (760)
. +..+..+..+. ..|.+++|+|+| ++++|+.||.|++|| .++....+ .|.+.|++++|+|+|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 5 55666655432 348999999999 999999999999999 56666665 3888999999999999
Q ss_pred EEEEEcCCcEEEEeCCCCe
Q 004329 281 IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 281 lvt~~~dg~I~vw~~~~~~ 299 (760)
+++|+.||.|++|++...+
T Consensus 359 l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECTTSCEEEEECCSSS
T ss_pred EEEeeCCCCEEEEecCCCc
Confidence 8999999999999998765
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8e-36 Score=342.34 Aligned_cols=343 Identities=29% Similarity=0.516 Sum_probs=279.7
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
+..+.|+||++.|++++|+|+|+ |+||+.|++|+|||.. ++ ....+.+|...|.+++|+|++. +|+++
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-----~~~~l~gh~~~V~~l~fspdg~-----~las~ 75 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHSSSVWGVAFSPDGQ-----TIASA 75 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-----EEEEEECCSSCEEEEEECTTSS-----EEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-----EEEEEeCCCCCEEEEEECCCCC-----EEEEE
Confidence 45578999999999999999999 9999999999999964 44 5678899999999999999987 79999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc-------------------------
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK------------------------- 141 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~------------------------- 141 (760)
+.|++|++||. +++++..+.+|...|.+++|+ +..+++++.|+.+++|+...
T Consensus 76 ~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 154 (577)
T 2ymu_A 76 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 154 (577)
T ss_dssp ETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred eCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccc
Confidence 99999999996 578889999999999999997 56799999999999997421
Q ss_pred -----------------eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCCe
Q 004329 142 -----------------LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGVG 202 (760)
Q Consensus 142 -----------------~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~~ 202 (760)
.......|...|.++.++|++. +++++.|+.|++||.. +....+.+|...|++++|+|++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 155 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp EEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred eecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCC
Confidence 1122345677888999999987 8899999999999944 56678889999999999999776
Q ss_pred -EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccC
Q 004329 203 -IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLEN 278 (760)
Q Consensus 203 -l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~ 278 (760)
+++++.|+.|++||.+++.+..+.+|...|.+++|+|++ .+++++.|+.|++|| .+.....+. |...|++++|+|+
T Consensus 235 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (577)
T 2ymu_A 235 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 314 (577)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCC
Confidence 999999999999999999999999999999999999999 999999999999999 667777665 8889999999999
Q ss_pred Cc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-----cceEEeccccCceeeecCCCCceeeccCCC---------
Q 004329 279 GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-----SQYKLCRKKVGGLKLEDLPGLEALQIPGTN--------- 343 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~--------- 343 (760)
+. +++++.||.|++|+..................+ ....+.+..++.+++|+..+.......++.
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC
Confidence 98 889999999999998876543321111111111 234556677889999998765544444443
Q ss_pred -cceEEEEeeCCceEEEEEeccc
Q 004329 344 -AGQTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 344 -~g~~~~v~~~~~~~~~~w~~~~ 365 (760)
+|...+.. +.++.+++|+...
T Consensus 395 ~dg~~l~~~-~~d~~v~~~~~~~ 416 (577)
T 2ymu_A 395 PDGQTIASA-SDDKTVKLWNRNG 416 (577)
T ss_dssp TTSSCEEEE-ETTSEEEEECTTC
T ss_pred CCCCEEEEE-eCCCEEEEEeCCC
Confidence 44433333 3347788898543
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-36 Score=322.21 Aligned_cols=289 Identities=24% Similarity=0.395 Sum_probs=245.2
Q ss_pred CCCceEeEEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 6 FKEYQLSSELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 6 ~~~~~l~~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
.++.++..+|+||++.|++|+|+|+ +. |+|||.||+|+|||+.+.+.....+...+.+|...|.+++|+|++.
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~----- 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ----- 99 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS-----
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC-----
Confidence 3556788899999999999999987 45 9999999999999998766555556778899999999999999987
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc---eeEEeecCCcCeEEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v~~v~~ 158 (760)
++++|+.|+.|++|+............+...+....+. +..+++++.|+.+++||... .......|...+.++.+
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence 79999999999999999998888888888888888886 66799999999999999753 23344578899999999
Q ss_pred eCCCc---EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcE
Q 004329 159 IPSGE---IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIV 232 (760)
Q Consensus 159 ~~~~~---l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v 232 (760)
++++. +++++.|+.|++||... ....+.+|...|++++|+|++. +++|+.||.|++||+..........+...+
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v 259 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDII 259 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCE
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceE
Confidence 98753 67999999999999654 5667889999999999999776 999999999999998655444444556789
Q ss_pred EEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe----------cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 233 YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE----------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 233 ~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~----------~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.++.++|++.+++++.|+.|++|| .+..+..+. |...|++++|+|+|+ +++|+.||.|++|++.+|.
T Consensus 260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 260 NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999888888999999999 444444442 677999999999999 8999999999999999875
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=326.45 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=239.3
Q ss_pred CceEeEEeccCCC-CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceee-eEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 8 EYQLSSELRGHED-DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSS-KILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 8 ~~~l~~~l~gH~~-~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
.++++.++.+|.+ .|.+++|+|++. |++|+.|++|+|||+.++. .... ....+|...|.+++|+|++. +
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~---~~~~~~~~~~h~~~v~~~~~sp~g~-----~ 75 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS---WICKSVLSEGHQRTVRKVAWSPCGN-----Y 75 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE---EEEEEEECSSCSSCEEEEEECTTSS-----E
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc---ceeeeeeccccCCcEEEEEECCCCC-----E
Confidence 5788999999988 999999999999 9999999999999987543 1122 23368999999999999987 7
Q ss_pred EEEEeCCCeEEEEECCCC--ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-----ceeEEeecCCcCeEE
Q 004329 85 LVSGGMDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHNAPIQT 155 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~v~~ 155 (760)
|++|+.|+.|++|+..++ +++..+.+|...|.+++|+ ++.|++|+.|++|++||.. .+...+..|...|.+
T Consensus 76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 999999999999999876 4577889999999999997 6679999999999999874 345677899999999
Q ss_pred EEEeCCCc-EEEEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC--C--------
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT--G-------- 219 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~-------- 219 (760)
++|+|++. +++|+.|+.|++||... +...+.+|...|.+++|+|++. |++++.|++|++||.. +
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 99999987 88999999999999543 3457889999999999999776 9999999999999951 1
Q ss_pred ------ceEEEeec-CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CC----ce----EEEE--ecCCcEEEEEEccCC
Q 004329 220 ------QVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG----VC----VQSI--EHPGCVWDAKFLENG 279 (760)
Q Consensus 220 ------~~~~~~~~-h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~----~~----~~~~--~~~~~v~~v~~~~~g 279 (760)
.++..+.+ |...|++++|+|++ .+++++.|+.|++|+ .+ .. .... .|...|++++|+|++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 23444554 88999999999999 999999999999998 11 11 1111 378899999999987
Q ss_pred c--EEEEEcCCcEEEEeCCCCeeech
Q 004329 280 D--IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 280 ~--lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
. +++|+.||.|++|++.+++....
T Consensus 316 ~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TTEEEEEETTSCEEEEEECC------
T ss_pred ceEEEEcCCCCcEEEEEecCCCCccc
Confidence 4 88999999999999998876543
No 17
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=316.74 Aligned_cols=289 Identities=36% Similarity=0.554 Sum_probs=258.8
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
..+++.+++.+|.+.|++++| +++. |++|+.||.|++||+.++. ....+..|...|.+++|+|++. ++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~-----~l 74 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKE-----LL 74 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTT-----EE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCC-----EE
Confidence 457899999999999999999 6665 9999999999999997543 5667788999999999999887 79
Q ss_pred EEEeCCCeEEEEECCCC---ceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeC-C
Q 004329 86 VSGGMDTMVLVWDLGSG---EKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIP-S 161 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~---~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~-~ 161 (760)
++|+.||.|++|++... +....+.+|...|.++.|+++.+++++.||.|++||.+.....+..|...+.++.+.+ +
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCC
Confidence 99999999999998654 5677888999999999999999999999999999998899999999999999999988 5
Q ss_pred Cc-EEEEECCCcEEEEeCCCceEEeec-CCCceEEEEEeCCCeEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEe
Q 004329 162 GE-IVSGSSDTTIKLWKGKKCAQTFVG-HTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH 238 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~~~~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~ 238 (760)
+. +++++.||.|++||..+....+.. |...|.+++++|++.+++++.||.|++||+. ++.+..+.+|...|++++|+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 54 889999999999998888888887 9999999999999889999999999999975 78888899999999999999
Q ss_pred CCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhh
Q 004329 239 ASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 239 p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
|++.+++++.||.|++|| .+++...+. |...|++++|+|++++++++.||.|++|++++++.....+.
T Consensus 235 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 235 PNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp TTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC----
T ss_pred cCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhhh
Confidence 999999999999999999 677777776 66699999999999999999999999999999887665543
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-36 Score=321.72 Aligned_cols=276 Identities=24% Similarity=0.391 Sum_probs=240.7
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.+..++|.||.+.|++++|+|++. |+|||.||+|++||..++. ....+..|...|.+++|+|++. ++++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-----~~~~~~~~~~~v~~~~~sp~g~-----~las 123 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----KEHAVTMPCTWVMACAYAPSGC-----AIAC 123 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECSSSCCCEEEECTTSS-----EEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----cceEEecCCCCEEEEEECCCCC-----EEEE
Confidence 456789999999999999999998 9999999999999988665 4566778999999999999998 7999
Q ss_pred EeCCCeEEEEECCCC------ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEE
Q 004329 88 GGMDTMVLVWDLGSG------EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVI 157 (760)
Q Consensus 88 gs~dg~I~vwd~~~~------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~ 157 (760)
|+.|+.+++|++... .....+.+|...|.+++|+ +..+++++.|++|++||.. +.+..+.+|...|.++.
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 999999999998643 3456778899999999997 5579999999999999974 67788999999999999
Q ss_pred EeCC--Cc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCc-eEEEeec--C
Q 004329 158 RIPS--GE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQ-VLMEMVG--H 228 (760)
Q Consensus 158 ~~~~--~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~~--h 228 (760)
++|+ +. +++|+.||.|++||.+ ++...+.+|...|++++|+|++. +++++.|++|++||+... .+..+.. +
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~ 283 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc
Confidence 9874 44 8899999999999954 56778889999999999999765 999999999999998654 4444433 3
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEe
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 294 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~ 294 (760)
...+.+++|+|++ ++++|+.|+.|++|| .+..+..+. |.+.|++++|+|+|. +++|+.||.|++|+
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 4578999999999 999999999999999 666776664 889999999999999 99999999999996
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-36 Score=323.16 Aligned_cols=286 Identities=23% Similarity=0.303 Sum_probs=236.9
Q ss_pred CceEeEEeccCCCCEEEEEE-----cC-CCe-EEEEECCCeEEEEeCCCCCCc--cceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 8 EYQLSSELRGHEDDVRGICV-----CD-NVG-IATSSRDRTVRFWSLDPSDKR--KYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~-----~~-~~~-l~tgs~Dg~i~iWd~~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
.+++..+|+||.+.|++++| ++ ++. |+||+.|++|++||+.+.... .......+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45678899999999999999 66 777 999999999999998754321 1234567889999999999999887
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEee---cCCcC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWE---AHNAP 152 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~---~~~~~ 152 (760)
++++|+.|++|++||+++++.+..+.+|...|.+++|+ ++.+++++.|++|++||.. ....... .|...
T Consensus 90 -----~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 90 -----FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164 (343)
T ss_dssp -----EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred -----EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence 69999999999999999999999999999999999997 5679999999999999985 3333333 68889
Q ss_pred eEEEEEeCCC-----------cEEEEECCCcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-C
Q 004329 153 IQTVIRIPSG-----------EIVSGSSDTTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-T 218 (760)
Q Consensus 153 v~~v~~~~~~-----------~l~tgs~dg~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~ 218 (760)
|.++.|+|++ .+++++.|+.|++||... ....+.+|...|.+++|+|++. +++++.||.|++||+ .
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9999999975 388999999999999543 4557889999999999999776 999999999999998 3
Q ss_pred CceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEE--EE------------ecCCcEEEEEEccCCc-E
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQ--SI------------EHPGCVWDAKFLENGD-I 281 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~--~~------------~~~~~v~~v~~~~~g~-l 281 (760)
.........+...|.+++|+|++.+++++.|+.|++|| .+.... .+ .|...|++++|+|+|+ +
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 33332333456679999999999555566788899999 333222 33 3566899999999999 9
Q ss_pred EEEEcCCcEEEEeCCCC
Q 004329 282 VTACSDGVTRIWTVHSD 298 (760)
Q Consensus 282 vt~~~dg~I~vw~~~~~ 298 (760)
++|+.||.|++|++.++
T Consensus 325 ~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEETTSEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEcc
Confidence 99999999999998765
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.2e-37 Score=328.31 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=227.6
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEEC------CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSR------DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~------Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
..+|+..|++++|+|||+ |++||. |++|++|+..++... ........+|...|.+++|+|++. +++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~s~d~~------~l~ 110 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-ESLCTAGVQTEAGVTDVAWVSEKG------ILV 110 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-GGGCSEEEECSSCEEEEEEETTTE------EEE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-eeEecccCCCCCCEEEEEEcCCCC------EEE
Confidence 357999999999999999 999997 788999998765432 223445567899999999999875 788
Q ss_pred EeCCCeEEEEECCCCceE----EEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEe
Q 004329 88 GGMDTMVLVWDLGSGEKV----QTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~----~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~ 159 (760)
++.||+|++||+.+++.. ....+|...|.+++|+ +.++++|+.||+|++||.. +.+..+..|...|.+++|+
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 999999999999887653 2345899999999997 5679999999999999975 6778889999999999999
Q ss_pred CCCc--EEEEECCCcEEEEeCCCc--eE--EeecCCCceEEEEEeCCC--eEEEEeCCCeEEEEec-CCceEEEeecCCC
Q 004329 160 PSGE--IVSGSSDTTIKLWKGKKC--AQ--TFVGHTDTVRGLSVMPGV--GIISASHDCTIRLWAL-TGQVLMEMVGHTA 230 (760)
Q Consensus 160 ~~~~--l~tgs~dg~i~iwd~~~~--~~--~~~~h~~~V~~l~~~~~~--~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~ 230 (760)
+++. +++++.||.|++||.+.. .. .+..|...+.+++|+|++ .+++|+.|+.|++||+ +++.+..+.+|..
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~ 270 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ 270 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce
Confidence 9864 889999999999996643 22 234577889999999953 3889999999999997 5678888999999
Q ss_pred cEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEcc-CCc-EEEEEcCCcEEEEeCCCC
Q 004329 231 IVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 231 ~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~-~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
.|++++|+|++ +|++|+.|++|+||| .+++++.+.|.+.|++++|+| ++. |++++.||.|++|++.+.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999987 799999999999999 778888888999999999998 677 889999999999999754
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-35 Score=342.89 Aligned_cols=314 Identities=18% Similarity=0.203 Sum_probs=256.4
Q ss_pred ceEeEEec----cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 9 YQLSSELR----GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 9 ~~l~~~l~----gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+++..++. .+.+.+.+++|+|+|+ |++++ +++|++|++.++. ....+.+|...|++++|+|++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~----- 72 (611)
T 1nr0_A 4 FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGY----- 72 (611)
T ss_dssp CEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTTSS-----
T ss_pred cccccEECCCCCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc-----cCeEecCCCCceEEEEECCCCc-----
Confidence 44555544 4577889999999998 88887 6799999997554 5667889999999999999998
Q ss_pred EEEEEeCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec--CCeEEEEECC----CeEEEEECCceeEEeecCCcCeEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD--NEDIVSSSVD----STLKRWRKGKLVEFWEAHNAPIQT 155 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~d----g~v~vwd~~~~~~~~~~~~~~v~~ 155 (760)
++++|+.||+|++||+.+++ ....+.+|...|.+++|+ +..+++++.+ +.|++||.+.....+.+|...|.+
T Consensus 73 ~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~ 152 (611)
T 1nr0_A 73 YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 152 (611)
T ss_dssp EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceE
Confidence 79999999999999997543 456788999999999998 5568888765 489999998888889999999999
Q ss_pred EEEeCCCc--EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEee---
Q 004329 156 VIRIPSGE--IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMV--- 226 (760)
Q Consensus 156 v~~~~~~~--l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~--- 226 (760)
++|+|++. +++|+.|++|++||.. ++...+.+|...|++++|+|++. +++++.|++|++||. +++.+..+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence 99999874 8899999999999955 45668889999999999999776 999999999999996 567777763
Q ss_pred ----cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE-----------------------------------
Q 004329 227 ----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI----------------------------------- 264 (760)
Q Consensus 227 ----~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~----------------------------------- 264 (760)
+|...|++++|+|++ +|++++.|++|++|| .++++..+
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 799999999999999 999999999999999 44444322
Q ss_pred ---------ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh------hhhhhhcccceEEeccccCceee
Q 004329 265 ---------EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE------LEAYASELSQYKLCRKKVGGLKL 328 (760)
Q Consensus 265 ---------~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~i~~ 328 (760)
.|...|++++|+|+|+ +++++.||.|++||+.+++...... +...........+....++.+++
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 3777999999999999 8999999999999999887654331 00001111233445556677888
Q ss_pred ecCCC
Q 004329 329 EDLPG 333 (760)
Q Consensus 329 ~~l~~ 333 (760)
|++.+
T Consensus 393 w~~~~ 397 (611)
T 1nr0_A 393 VPAGG 397 (611)
T ss_dssp ECSSS
T ss_pred eecCC
Confidence 87654
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=321.85 Aligned_cols=278 Identities=18% Similarity=0.191 Sum_probs=224.3
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCC------CCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPS------DKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~------~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
..|...|.+++|+|||+ |++++ |+++|+||.... .............|...|.+++|+|++. +++|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~------l~~~ 99 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG------ILVA 99 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE------EEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe------EEEE
Confidence 36788899999999999 55555 888888873210 0011112223345678899999999864 8999
Q ss_pred eCCCeEEEEECCCCceEEE----EeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeC
Q 004329 89 GMDTMVLVWDLGSGEKVQT----LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~----l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~ 160 (760)
+.||+|++||+.+++.... +.+|...|++++|+ +++|++|+.||+|++||.. +++..+.+|...|.+++|++
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 9999999999998875443 45899999999997 6679999999999999974 77888999999999999999
Q ss_pred CCc--EEEEECCCcEEEEeCCC--ceEEee--cCCCceEEEEEeCC-Ce-EEEEeCCCeEEEEec-CCceEEEeecCCCc
Q 004329 161 SGE--IVSGSSDTTIKLWKGKK--CAQTFV--GHTDTVRGLSVMPG-VG-IISASHDCTIRLWAL-TGQVLMEMVGHTAI 231 (760)
Q Consensus 161 ~~~--l~tgs~dg~i~iwd~~~--~~~~~~--~h~~~V~~l~~~~~-~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~ 231 (760)
++. +++|+.|++|++||.+. ....+. .|...+.+++|+|+ +. +++|+.||+|++||+ +++++..+.+|...
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~ 259 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC 259 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC
Confidence 874 78999999999999654 444443 46667999999984 44 789999999999997 57788999999999
Q ss_pred EEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCee
Q 004329 232 VYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 232 v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~~ 300 (760)
|++++|+|++ +|++|+.|++|+||| .+++.....|.+.|++++|+|++. +++++.||+|++|++.+...
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999999997 799999999999999 666666667999999999999987 56888999999999987643
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-34 Score=305.69 Aligned_cols=280 Identities=29% Similarity=0.496 Sum_probs=242.5
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
+.+.+..++.+|.+.|++++|+|++. |++|+.||.|++|+..+++ ....+.+|...|.+++|+|++. ++
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~-----~l 80 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN-----LL 80 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSS-----EE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCC-----EE
Confidence 45788899999999999999999998 9999999999999998665 5667889999999999999987 79
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~ 161 (760)
++|+.||.|++||+++++++..+.+|...|.++.|+ ++.+++|+.||.|++||.. +....+..|..+|.++.|+|+
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 999999999999999999999999999999999997 5679999999999999975 677788899999999999999
Q ss_pred Cc-EEEEECCCcEEEEeCCC--ceEEe-ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEE-
Q 004329 162 GE-IVSGSSDTTIKLWKGKK--CAQTF-VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYS- 234 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~~--~~~~~-~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~- 234 (760)
+. +++++.||.|++||.+. ....+ ..+...+..++|+|++. +++++.|+.|++||+. ++.+..+.+|...+.+
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 87 78999999999999764 33333 35677899999999776 9999999999999974 6677778888764332
Q ss_pred -EEEe-CCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEE--cCCcEEEEeCC
Q 004329 235 -IDSH-ASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTAC--SDGVTRIWTVH 296 (760)
Q Consensus 235 -v~~~-p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~--~dg~I~vw~~~ 296 (760)
..++ +++ ++++|+.||.|++|| .++.+..+. |...|++++|+|++. +++++ .||.|++|+.+
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2333 455 899999999999999 677777776 888999999999999 66666 59999999965
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-34 Score=310.75 Aligned_cols=269 Identities=23% Similarity=0.426 Sum_probs=227.6
Q ss_pred cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC------------------CCCeEEEEEeCCC
Q 004329 17 GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH------------------TSFVGPLAWISPN 77 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h------------------~~~V~~l~~~~~~ 77 (760)
+|.+.|++++|+|+|. |++|+ |+++++|++.++. ....+..| ...|.+++|+|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS-----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC-----EEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC-----EEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 6999999999999999 77665 7899999998765 22333322 3359999999998
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
. ++++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +..+++++.|++|++||.. +....+ .+...+
T Consensus 136 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v 209 (393)
T 1erj_A 136 K-----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGV 209 (393)
T ss_dssp S-----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCE
T ss_pred C-----EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-EcCCCc
Confidence 7 69999999999999999999999999999999999997 6679999999999999985 333333 456789
Q ss_pred EEEEEeC-CCc-EEEEECCCcEEEEeCCC--ceEEe-------ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC---
Q 004329 154 QTVIRIP-SGE-IVSGSSDTTIKLWKGKK--CAQTF-------VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT--- 218 (760)
Q Consensus 154 ~~v~~~~-~~~-l~tgs~dg~i~iwd~~~--~~~~~-------~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--- 218 (760)
.+++++| ++. +++|+.|+.|++||... ....+ .+|...|.+++|+|++. +++++.|++|++||+.
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999 666 78999999999999654 33333 57999999999999776 9999999999999974
Q ss_pred ----------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEcc------C
Q 004329 219 ----------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLE------N 278 (760)
Q Consensus 219 ----------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~------~ 278 (760)
+.+...+.+|...|.+++++|++ +|++|+.|+.|++|| .+.++..+. |.+.|++++|++ +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 369 (393)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCC
Confidence 24566788999999999999999 999999999999999 677777776 888999999986 5
Q ss_pred Cc-EEEEEcCCcEEEEeCCC
Q 004329 279 GD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~ 297 (760)
+. +++|+.||.|++|++..
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEECCCCcEEECcccc
Confidence 66 89999999999999764
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-33 Score=331.65 Aligned_cols=282 Identities=27% Similarity=0.434 Sum_probs=236.4
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
.++...+++|.+.|++++|++++. |+|||.||+|++|++.+...........+.+|...|.+++|+|++. +++
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-----~l~ 446 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-----FAL 446 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-----EEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-----EEE
Confidence 466678999999999999998753 9999999999999998654333345667899999999999999987 799
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEe----ecCCcCeEEEEEe
Q 004329 87 SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFW----EAHNAPIQTVIRI 159 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~----~~~~~~v~~v~~~ 159 (760)
+|+.||+|++||+.+++....+.+|...|.+++|+ ++.+++|+.|++|++||.. .....+ .+|...|.++.|+
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 99999999999999999999999999999999997 5669999999999999974 333333 3688899999999
Q ss_pred CCC---cEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcE
Q 004329 160 PSG---EIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIV 232 (760)
Q Consensus 160 ~~~---~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v 232 (760)
|++ .+++|+.|++|++||.+. ....+.+|...|++++|+|++. +++|+.||+|++||+. ++.+..+ .+...|
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~-~~~~~v 605 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVI 605 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC-BCSSCE
T ss_pred CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-cCCCcE
Confidence 986 388999999999999654 5667889999999999999776 9999999999999985 4455444 456789
Q ss_pred EEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEec--------------------CCcEEEEEEccCCc-EEEEEcCCc
Q 004329 233 YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH--------------------PGCVWDAKFLENGD-IVTACSDGV 289 (760)
Q Consensus 233 ~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~--------------------~~~v~~v~~~~~g~-lvt~~~dg~ 289 (760)
.+++|+|++.+++++.|+.|++|| .+.++..+.. ...+++++|+|+|+ +++|+.||.
T Consensus 606 ~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 606 HALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 999999999555555677799999 5566655531 11378999999999 899999999
Q ss_pred EEEEeCC
Q 004329 290 TRIWTVH 296 (760)
Q Consensus 290 I~vw~~~ 296 (760)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999985
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-33 Score=294.44 Aligned_cols=287 Identities=15% Similarity=0.260 Sum_probs=243.2
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
.|+.+.........+|.+.|++++|+|++. |++++ ||.|++|++.++............+|...|.+++|+|++.
T Consensus 35 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 110 (337)
T 1gxr_A 35 GPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--- 110 (337)
T ss_dssp STTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---
T ss_pred ccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC---
Confidence 344444444444458999999999999999 77777 9999999998665322222222337999999999999887
Q ss_pred CcEEEEEeCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
++++++.||.|++||+.+++ ....+..|...|.+++|+ ++.+++++.||.|++||.. +....+..|...+.+
T Consensus 111 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 111 --TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp --EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred --EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence 69999999999999999887 567788999999999997 5679999999999999975 667778889999999
Q ss_pred EEEeCCCc-EEEEECCCcEEEEeCCCceE-EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcE
Q 004329 156 VIRIPSGE-IVSGSSDTTIKLWKGKKCAQ-TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIV 232 (760)
Q Consensus 156 v~~~~~~~-l~tgs~dg~i~iwd~~~~~~-~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v 232 (760)
+.|+|++. +++++.||.|++||.+.... ....|...+.+++|+|++. +++++.|+.|++||+.......+..|...|
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v 268 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce
Confidence 99999987 88999999999999765332 2335788999999999776 899999999999999877777888999999
Q ss_pred EEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 233 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 233 ~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
.+++|+|++ ++++++.||.|++|| .++.+....|...|.+++|+|+++ +++++.||.|++|++
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999 999999999999999 667777777999999999999998 899999999999996
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.5e-34 Score=310.88 Aligned_cols=246 Identities=28% Similarity=0.512 Sum_probs=225.3
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|..||+.+.++.+++.+|.+.|++++|+|++. |++|+.||+|++||+.+++ ....+.+|...|.+++|+|++.
T Consensus 132 i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~- 205 (410)
T 1vyh_C 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVSIMPNGD- 205 (410)
T ss_dssp EEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEEEEEECSSSS-
T ss_pred EEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEEeCCCC-
Confidence 46799999999999999999999999999998 9999999999999998654 6677889999999999999987
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
++++|+.|++|++||+.++.++..+.+|...|.++.++ +..+++|+.||+|++||.. .+...+..|...|.+
T Consensus 206 ----~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 206 ----HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281 (410)
T ss_dssp ----EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ----EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEE
Confidence 69999999999999999999999999999999999997 5669999999999999974 677788899999999
Q ss_pred EEEeCC--------------------Cc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCe
Q 004329 156 VIRIPS--------------------GE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCT 211 (760)
Q Consensus 156 v~~~~~--------------------~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~ 211 (760)
+.|+|+ +. +++|+.|+.|++||.. .+...+.+|...|++++|+|++. +++|+.||+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 999985 33 8899999999999965 46678889999999999999776 999999999
Q ss_pred EEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 212 IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 212 I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
|++||+ +++++..+.+|...|++++|+|++ ++++|+.||+|++|+
T Consensus 362 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 999997 467788899999999999999999 999999999999997
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-33 Score=349.53 Aligned_cols=358 Identities=23% Similarity=0.348 Sum_probs=272.2
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|..||..+.+...++.+|.+.|++++|+|++. |++|+.||+|++||+.++. ....+.+|...|.+++|+|++..
T Consensus 639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNH 713 (1249)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSC
T ss_pred EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcCCCCcEEEEEEecCCCc
Confidence 46799999999999999999999999999998 9999999999999998775 67788899999999999997553
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc--eeEE----------
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK--LVEF---------- 145 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~--~~~~---------- 145 (760)
. ++++|+.||.|++||+.++++...+.+|...|.+++|+ +..+++++.||+|++||... ....
T Consensus 714 ~---~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 714 L---LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp C---EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred e---EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 2 79999999999999999999999999999999999997 56799999999999998631 1111
Q ss_pred ---------------------------------------------eecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 004329 146 ---------------------------------------------WEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK 179 (760)
Q Consensus 146 ---------------------------------------------~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~ 179 (760)
..+|...|.++.|+|++. +++++.||.|++||..
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 115677888888888877 6788888999999855
Q ss_pred C--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC--------------------------------------
Q 004329 180 K--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-------------------------------------- 218 (760)
Q Consensus 180 ~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-------------------------------------- 218 (760)
. ....+.+|...|.+++|+|++. +++++.||.|++||+.
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 3 4556778888899999988665 8888888888888732
Q ss_pred ------------------------------------------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEE
Q 004329 219 ------------------------------------------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW 255 (760)
Q Consensus 219 ------------------------------------------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iw 255 (760)
+.....+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22233444677777888888887 78888888888888
Q ss_pred e--CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhh-hhh----cc-cceEEeccccCcee
Q 004329 256 K--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA-YAS----EL-SQYKLCRKKVGGLK 327 (760)
Q Consensus 256 d--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~-~~~----~~-~~~~~~~~~~g~i~ 327 (760)
| .+.......|...|.+++|+|++.+++++.||.|++||+.+++....+.... ... +. ....+.+..++.++
T Consensus 1031 d~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~ 1110 (1249)
T 3sfz_A 1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110 (1249)
T ss_dssp ETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCC
T ss_pred ECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 8 5555554557778888888887778888888888888887777654443111 011 11 23445666778999
Q ss_pred eecCCCCceee-ccCC----------CcceEEEEeeCCceEEEEEeccccc
Q 004329 328 LEDLPGLEALQ-IPGT----------NAGQTKVVREGDNGVAYSWDMKEQK 367 (760)
Q Consensus 328 ~~~l~~~~~l~-~~g~----------~~g~~~~v~~~~~~~~~~w~~~~~~ 367 (760)
+|++.....+. ..++ ++|...++. +.++.+++|+...+.
T Consensus 1111 iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~-~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG-DDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp EECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEE-ETTSCCCEEESSSSC
T ss_pred EEECCCcceeeeeccCCCcEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc
Confidence 99987544332 2233 344444333 344678889877654
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=294.08 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=247.9
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
.....+|.+|.+.|++++|+|++. |++|+.||.|++||+.+++ ....+.+|...|.+++|+|++. ++++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~-----~l~s 91 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTK-----YCVT 91 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSS-----EEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCC-----EEEE
Confidence 345567899999999999999998 9999999999999998665 5677889999999999999887 6999
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC-----CeEEEEECC-------------ceeEEee
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD-----STLKRWRKG-------------KLVEFWE 147 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d-----g~v~vwd~~-------------~~~~~~~ 147 (760)
++.||.|++||+.+++.+..+. |...+.+++|+ +..+++++.+ |.|++||.. .....+.
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 9999999999999999998888 88999999997 5669999998 999999753 2344555
Q ss_pred cCCc--CeEEEEEeCCCc-EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-
Q 004329 148 AHNA--PIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG- 219 (760)
Q Consensus 148 ~~~~--~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~- 219 (760)
.|.. .+.+++|+|++. +++++.||.|++||... ....+..|...|.+++|+|++. +++++.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 6666 899999999987 78999999999999654 5667888999999999999776 99999999999999864
Q ss_pred ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCC--------------cEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-
Q 004329 220 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR--------------FAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD- 280 (760)
Q Consensus 220 ~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg--------------~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~- 280 (760)
+.+..+. +...+.+++|+|++ .+++++.++ .+++|| .+..+..+. |...|++++|+|+|+
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence 4444444 88999999999999 999999888 899999 667777776 888999999999999
Q ss_pred EEEEEcCCcEEEEeCCCCeeechhhhh
Q 004329 281 IVTACSDGVTRIWTVHSDKVADSLELE 307 (760)
Q Consensus 281 lvt~~~dg~I~vw~~~~~~~~~~~~~~ 307 (760)
+++++.||.|++|+++.+.....+..+
T Consensus 330 l~s~~~dg~v~iw~~~~~~~~~~~~~~ 356 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKSYFDFKYDVE 356 (369)
T ss_dssp EEEEETTSEEEEEEECHHHHTCCCHHH
T ss_pred EEEEcCCCeEEEEECccccchhHHHHH
Confidence 899999999999999987765555443
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=307.85 Aligned_cols=350 Identities=15% Similarity=0.170 Sum_probs=259.2
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeC----CCCCCc-cceeeeEeeC----------CC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSL----DPSDKR-KYHSSKILLG----------HT 65 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~----~~~~~~-~~~~~~~~~~----------h~ 65 (760)
.|++...........|.+.|++++|+|++. |++|+.||.|++|++ .++... .......+.. |.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 29 SDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp -----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C
T ss_pred cccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC
Confidence 456555444444456779999999999986 999999999999999 755410 0001122222 68
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--c
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--K 141 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~ 141 (760)
..|.+++|+|++. +|++|+.||.|++|| .+++.+..+.+|...|.+++|+ +..+++++.||.|++||.. +
T Consensus 109 ~~v~~~~~s~~~~-----~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGN-----SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSS-----EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCC-----EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 8999999999887 799999999999999 6788889999999999999997 5669999999999999974 5
Q ss_pred eeEEeecCCcC---------------eEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-E
Q 004329 142 LVEFWEAHNAP---------------IQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-I 203 (760)
Q Consensus 142 ~~~~~~~~~~~---------------v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l 203 (760)
....+..+... +.++.|++++.+++++.+|.|++||.. +....+..|...|.+++|+|++. +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 66667777666 899999999999999999999999955 45667888999999999999765 9
Q ss_pred EEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCC
Q 004329 204 ISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENG 279 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g 279 (760)
++++.||.|++||+. ++.+..+.+|...|.+++|+|++.+++++.|+.|++|| .+.++..+. |...|.+++|+|++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 999999999999974 56778888899999999999999999999999999999 667777776 67899999999999
Q ss_pred c-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCC--ceeeccCCCcceEEEEeeCCce
Q 004329 280 D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGL--EALQIPGTNAGQTKVVREGDNG 356 (760)
Q Consensus 280 ~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~--~~l~~~g~~~g~~~~v~~~~~~ 356 (760)
. +++++.||.|++|++.+++............. ........+........ .+..+..+++|...++.. .++
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg 416 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI-----LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQ 416 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHHC-------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSS
T ss_pred CEEEEEECCCeEEEEECCCCccceeeeecccccc-----cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCc
Confidence 9 88899999999999986652211100000000 00000011222222211 445556677777555544 457
Q ss_pred EEEEEecc
Q 004329 357 VAYSWDMK 364 (760)
Q Consensus 357 ~~~~w~~~ 364 (760)
.+++|+..
T Consensus 417 ~i~iw~~~ 424 (425)
T 1r5m_A 417 EGSVVAIP 424 (425)
T ss_dssp CCEEEECC
T ss_pred eEEEEeec
Confidence 88999864
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=296.17 Aligned_cols=234 Identities=23% Similarity=0.291 Sum_probs=202.9
Q ss_pred cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 17 GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
.|...|++++|+|++.|++|+.||+|+|||+.+++. .........+|.+.|++++|+|++. +|++|+.||+|++
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~spdg~-----~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVLSSGT-----QAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEECTTSS-----EEEEEETTSCEEE
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEECCCCC-----EEEEEeCCCeEEE
Confidence 467789999999999999999999999999987652 2223345678999999999999987 7999999999999
Q ss_pred EECCCCceEEEEeCCCccEEEEEec--C-CeEEEEECCCeEEEEECC--ceeEEee--cCCcCeEEEEEeCCC-c-EEEE
Q 004329 97 WDLGSGEKVQTLQGHKLQVTGVTLD--N-EDIVSSSVDSTLKRWRKG--KLVEFWE--AHNAPIQTVIRIPSG-E-IVSG 167 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~v~vwd~~--~~~~~~~--~~~~~v~~v~~~~~~-~-l~tg 167 (760)
||+.+++++..+.+|...|.+++|+ + ..+++++.||+|++||.. +....+. .|...+.+++|+|++ . +++|
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 9999999999999999999999997 3 358999999999999985 4455543 456679999999964 4 6789
Q ss_pred ECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCC-e-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC--
Q 004329 168 SSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGV-G-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-- 241 (760)
Q Consensus 168 s~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-- 241 (760)
+.||.|++||.+ +++..+.+|...|++++|+|++ . +++|+.|++|++||+....+..+.+|...|++++|+|++
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTT
T ss_pred ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCe
Confidence 999999999954 5778899999999999999975 3 889999999999999877778889999999999999998
Q ss_pred eEEEEeCCCcEEEEe
Q 004329 242 LIVSGSEDRFAKIWK 256 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd 256 (760)
+|+++|.|++|++|+
T Consensus 314 llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEcCCCeEEEEE
Confidence 678999999999999
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6e-33 Score=302.38 Aligned_cols=285 Identities=16% Similarity=0.240 Sum_probs=244.3
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCC-ccceeeeEeeCCCCCeEEEEEeCC----C---CCC
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDK-RKYHSSKILLGHTSFVGPLAWISP----N---EEF 80 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~----~---~~~ 80 (760)
.+....+.+|.+.|++++|+| ..|++|+.||+|++|++.++.. ........+.+|...|.+++|+|+ + .
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-- 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-- 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--
T ss_pred hhhhhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--
Confidence 356778899999999999999 5699999999999999986541 223346677899999999999998 6 5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCce-----EEEEeCC-----CccEEEEEec------CCe-EEEEECCCeEEEEECCc--
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEK-----VQTLQGH-----KLQVTGVTLD------NED-IVSSSVDSTLKRWRKGK-- 141 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~-----~~~l~~h-----~~~V~~l~~~------~~~-l~sgs~dg~v~vwd~~~-- 141 (760)
++++++.||.|++||+.+++. ...+..| ...|.+++|+ +.. +++++.||.|++||...
T Consensus 83 ---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 83 ---LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp ---EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred ---EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 699999999999999998887 8888888 5999999997 667 99999999999998643
Q ss_pred ------eeE-----Ee-------ecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeec---C---CCceEEE
Q 004329 142 ------LVE-----FW-------EAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVG---H---TDTVRGL 195 (760)
Q Consensus 142 ------~~~-----~~-------~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~---h---~~~V~~l 195 (760)
.+. .+ ..|...|.+++|+|++.+++++.||.|++||.+ +....+.. | ...|.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 344 55 448899999999998866789999999999965 45667777 8 9999999
Q ss_pred EEeCCCe-EEEEeCC---CeEEEEec-CCceEEEeec-------------CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 196 SVMPGVG-IISASHD---CTIRLWAL-TGQVLMEMVG-------------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 196 ~~~~~~~-l~s~s~d---g~I~iwd~-~~~~~~~~~~-------------h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+|+|++. +++++.| |.|++||+ +++.+..+.+ |...|.+++|+|++ +|++++.||.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999766 8999999 99999997 5677888888 99999999999999 999999999999999
Q ss_pred --CCceEEEEe-------c---------------CCcEEEEEEccCC----------c-EEEEEcCCcEEEEeCCCCe
Q 004329 257 --DGVCVQSIE-------H---------------PGCVWDAKFLENG----------D-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 257 --~~~~~~~~~-------~---------------~~~v~~v~~~~~g----------~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.++++..+. | ...|++++|+|+| . +++++.||.|++|++.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 677787776 4 7799999999998 5 8999999999999998764
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-32 Score=289.88 Aligned_cols=243 Identities=20% Similarity=0.363 Sum_probs=217.3
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS 132 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg 132 (760)
......+.+|.+.|.+++|+|++. ++++|+.||.|++||..+++.+..+..|...|.+++|+ ++.+++|+.|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-----~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-----LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred chhheeecCCCCceEEEEECCCCC-----EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 345678899999999999999987 79999999999999999999999999999999999997 66799999999
Q ss_pred eEEEEECC------ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-E
Q 004329 133 TLKRWRKG------KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-I 203 (760)
Q Consensus 133 ~v~vwd~~------~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l 203 (760)
.+++|+.. .....+.+|...|.++.|++++.+++++.|++|++||.. +....+.+|...|.+++|+|++. +
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 99999975 245667899999999999999999999999999999965 45667889999999999999776 8
Q ss_pred EEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC---cEEEEEEc
Q 004329 204 ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG---CVWDAKFL 276 (760)
Q Consensus 204 ~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~---~v~~v~~~ 276 (760)
++|+.|+.|++||+ ++.+...+.+|...|.+++|+|++ +|++|+.||+|++|| .+..+..+.|.. .|++++|+
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 99999999999997 567788899999999999999999 999999999999999 556666776543 79999999
Q ss_pred cCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 277 ENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 277 ~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
|+|. +++|+.||.|++||+.+++...
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEee
Confidence 9999 8899999999999998876544
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=300.66 Aligned_cols=268 Identities=17% Similarity=0.281 Sum_probs=236.9
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
|.+.|++++|+|++. |++|+.||.|++||.. +. ....+.+|...|.+++|+|++. ++++++.||.|++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~i 175 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA-----LLNVLNFHRAPIVSVKWNKDGT-----HIISMDVENVTIL 175 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-----EEEEECCCCSCEEEEEECTTSS-----EEEEEETTCCEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-----eeeeccCCCccEEEEEECCCCC-----EEEEEecCCeEEE
Confidence 788999999999998 9999999999999943 43 5667888999999999999887 6999999999999
Q ss_pred EECCCCceEEEEeCCCcc---------------EEEEEec-CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEE
Q 004329 97 WDLGSGEKVQTLQGHKLQ---------------VTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~~~---------------V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~ 158 (760)
||+.+++.+..+..|... +.++.|+ ++.+++++.||.|++||.. +....+..|...|.+++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 999999999998888776 8888887 7789999999999999975 667778899999999999
Q ss_pred eCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEE
Q 004329 159 IPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYS 234 (760)
Q Consensus 159 ~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~ 234 (760)
+|++. +++++.|+.|++||.. +....+..|...|.+++|+|++.+++++.|+.|++||+ +++.+..+..|...|.+
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEE
Confidence 99987 8899999999999955 45677888999999999999889999999999999997 56778888899999999
Q ss_pred EEEeCCC-eEEEEeCCCcEEEEe--CCc--------------------eEEEEe-cCC--cEEEEEEccCCc-EEEEEcC
Q 004329 235 IDSHASG-LIVSGSEDRFAKIWK--DGV--------------------CVQSIE-HPG--CVWDAKFLENGD-IVTACSD 287 (760)
Q Consensus 235 v~~~p~~-~l~s~s~Dg~I~iwd--~~~--------------------~~~~~~-~~~--~v~~v~~~~~g~-lvt~~~d 287 (760)
++|+|++ ++++++.||.|++|| .+. ++..+. |.. .|++++|+|+++ +++++.|
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence 9999999 999999999999999 444 566666 544 999999999998 8899999
Q ss_pred CcEEEEeCC
Q 004329 288 GVTRIWTVH 296 (760)
Q Consensus 288 g~I~vw~~~ 296 (760)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999985
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-32 Score=297.70 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=231.3
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCC-e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNV-G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~-~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
.+++.++++.+++.+|.+.|++++|+|++ . |++|+.||+|++||+.++. ........+|...|.+++|+|++..
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~- 132 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTN- 132 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEE-
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCC-
Confidence 35667899999999999999999999998 5 9999999999999998665 1222223479999999999994322
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeC---CCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQG---HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQ 154 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~---h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~ 154 (760)
++++++.|+.|++||+.+ .....+.. |...|.+++|+ +..+++|+.||.|++||.. +....+..|...|.
T Consensus 133 ---~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 133 ---QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp ---EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEE
T ss_pred ---EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEE
Confidence 699999999999999985 55555544 44889999997 6679999999999999984 67788889999999
Q ss_pred EEEEeCCCc--EEEEECCCcEEEEeCCC------ceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEecC-CceEE
Q 004329 155 TVIRIPSGE--IVSGSSDTTIKLWKGKK------CAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWALT-GQVLM 223 (760)
Q Consensus 155 ~v~~~~~~~--l~tgs~dg~i~iwd~~~------~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~~-~~~~~ 223 (760)
+++|+|++. +++|+.|+.|++||.+. ....+ +|...|.+++|+| ++. +++++.|+.|++||+. ++...
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 999999986 78999999999999653 33344 7999999999999 776 9999999999999974 44444
Q ss_pred EeecCC-----------------CcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe---cCCcEEEEEEccCCc-
Q 004329 224 EMVGHT-----------------AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENGD- 280 (760)
Q Consensus 224 ~~~~h~-----------------~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~---~~~~v~~v~~~~~g~- 280 (760)
.+.+|. ..+..++++|++.+ +++.|+.|++|| .++++..+. |...+.+++|+|+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 554442 34555777777733 788999999999 778888886 456788889999999
Q ss_pred EEEEEcCCcEEEEeCCC
Q 004329 281 IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 281 lvt~~~dg~I~vw~~~~ 297 (760)
+++| +||.|++|++++
T Consensus 367 l~s~-sd~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASG-MGFNILIWNRED 382 (383)
T ss_dssp EEEE-ETTEEEEEECC-
T ss_pred EEEe-cCCcEEEEecCC
Confidence 5555 599999999874
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.3e-32 Score=323.09 Aligned_cols=280 Identities=22% Similarity=0.326 Sum_probs=247.7
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
+++.+.+.+|++.|++++|+|++. |++|+.||.|++||+.++. ....+.+|...|.+++|+|++. +|++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~-----~l~~ 72 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKN-----WIIV 72 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----EEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCC-----EEEE
Confidence 567789999999999999999999 9999999999999998665 5677889999999999999987 6999
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeC-C
Q 004329 88 GGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIP-S 161 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~-~ 161 (760)
|+.||.|++||+.+++.+..+.+|...|.+++|+ +..+++++.||.|++||.. .....+.+|...|.+++|+| +
T Consensus 73 ~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 9999999999999999999999999999999998 5569999999999999864 55677889999999999999 6
Q ss_pred Cc-EEEEECCCcEEEEeCC--CceEEeec-CCCceEEEEEeC--CCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEE
Q 004329 162 GE-IVSGSSDTTIKLWKGK--KCAQTFVG-HTDTVRGLSVMP--GVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVY 233 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~--~~~~~~~~-h~~~V~~l~~~~--~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~ 233 (760)
+. +++++.||.|++||.. .....+.. |...+.+++|+| ++. +++++.||.|++||+ +++.+..+.+|...|.
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 232 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 65 8899999999999964 34445554 448999999998 655 999999999999996 4677888889999999
Q ss_pred EEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCC
Q 004329 234 SIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 234 ~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~ 298 (760)
+++|+|++ .+++++.||.|++|| .+.....+. |...+++++|+|+|. +++++.++.+.+|++..+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999 999999999999999 667777776 667999999999997 688888999999998654
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-32 Score=284.14 Aligned_cols=243 Identities=24% Similarity=0.366 Sum_probs=214.7
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTL 134 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v 134 (760)
....+.+|.+.|.+++|+|++. ++++|+.||.|++||+.+++.+..+..|...|.++.|+ ++.+++|+.|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-----~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-----WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-----EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eEEeecCCCCceEEEEECCCCC-----EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 5667889999999999999998 79999999999999999999999999999999999996 6779999999999
Q ss_pred EEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeC-CC-eEEEE
Q 004329 135 KRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMP-GV-GIISA 206 (760)
Q Consensus 135 ~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~-~~-~l~s~ 206 (760)
++||.. +.+..+.+|...|.+++|+|++. +++|+.|++|++||... ....+.+|...|.+++|+| ++ .+++|
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 999974 77788999999999999999987 78999999999999653 3457889999999999999 44 49999
Q ss_pred eCCCeEEEEecC-CceEEEe-ecCCCcEEEEEEeC--CC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccC
Q 004329 207 SHDCTIRLWALT-GQVLMEM-VGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN 278 (760)
Q Consensus 207 s~dg~I~iwd~~-~~~~~~~-~~h~~~v~~v~~~p--~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~ 278 (760)
+.|++|++||+. +.....+ .+|...+..+.++| ++ ++++++.|++|++|| .+.++..+. |...|.+++|+|+
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 999999999974 3444444 35678899999987 55 999999999999999 677888776 8889999999999
Q ss_pred Cc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 279 GD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+. +++|+.||.|++||..+++....+
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeec
Confidence 98 899999999999999998876544
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-31 Score=336.30 Aligned_cols=347 Identities=18% Similarity=0.242 Sum_probs=282.1
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
....+.+|.+.|++++|+|++. +++|+.||+|++||+.++. ....+.+|...|.+++|+|++. ++++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~-----~l~s~~ 676 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDS-----YIATCS 676 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSS-----EEEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCC-----EEEEEe
Confidence 3457889999999999999998 9999999999999998776 5677889999999999999987 799999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCccEEEEEecC----CeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN----EDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
.||.|++||+.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||.. .+...+.+|...|++++|+|++.
T Consensus 677 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999963 258999999999999874 67788889999999999999987
Q ss_pred -EEEEECCCcEEEEeCCCce--EE-------------------------------------------------------e
Q 004329 164 -IVSGSSDTTIKLWKGKKCA--QT-------------------------------------------------------F 185 (760)
Q Consensus 164 -l~tgs~dg~i~iwd~~~~~--~~-------------------------------------------------------~ 185 (760)
+++|+.||.|++||..... .. .
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 8899999999999854211 11 1
Q ss_pred ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeCCc---
Q 004329 186 VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGV--- 259 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~~~--- 259 (760)
.+|...|.+++|+|++. +++++.||.|++||+. +..+..+.+|...|.+++|+|++ .+++++.||.|++|+...
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 26788899999999766 8999999999999974 67778888999999999999999 999999999999998110
Q ss_pred -----e-----------------------EE---------EEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 260 -----C-----------------------VQ---------SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 260 -----~-----------------------~~---------~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
. .. ...+...+.+++|+|+|. +++|+.||.|++|++.+++..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 0 00 011345799999999999 889999999999999998876
Q ss_pred chhhhhh-----hhhcc-cceEEeccccCceeeecCCCCceeeccCCCcceEE--------EEeeCCceEEEEEeccccc
Q 004329 302 DSLELEA-----YASEL-SQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTK--------VVREGDNGVAYSWDMKEQK 367 (760)
Q Consensus 302 ~~~~~~~-----~~~~~-~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~--------~v~~~~~~~~~~w~~~~~~ 367 (760)
....... ..... ....+++..++.+++|++...+.....++...... ++..+.++.+++|+...++
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc
Confidence 5543211 11111 24566777889999999987766655555433322 2333445788999987664
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=290.01 Aligned_cols=245 Identities=22% Similarity=0.365 Sum_probs=221.2
Q ss_pred ccccCCCc--eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDFKEY--QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~~~~--~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
..||+... .+...+.+|...|.+++|++++. +++|+.|++|++||+.+++ ....+..|...+.+++|+|++.
T Consensus 61 ~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEECTTSS
T ss_pred EEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEECCCCC
Confidence 45776544 45667999999999999999988 9999999999999998665 5667788999999999999988
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
++++|+.||.|++|++++++....+..|...|.+++|+ ++++++|+.||.|++||.. +.+..+.+|..+|.
T Consensus 136 -----~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (321)
T 3ow8_A 136 -----YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210 (321)
T ss_dssp -----EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC
T ss_pred -----EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCcee
Confidence 69999999999999999999999999999999999997 6679999999999999974 67778899999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCC
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHT 229 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~ 229 (760)
+++|+|++. +++|+.|+.|++||.+ +....+.+|...|.+++|+|++. +++++.|++|++||+ +++++..+.+|.
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 999999987 7899999999999965 45668889999999999999766 999999999999997 477888899999
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
..|.+++|+|++ .|++++.|++|++||
T Consensus 291 ~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999 999999999999998
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-32 Score=285.47 Aligned_cols=289 Identities=25% Similarity=0.406 Sum_probs=235.5
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-----CceEEEEeCCCccEEEEEec--CCeEEE
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-----GEKVQTLQGHKLQVTGVTLD--NEDIVS 127 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-----~~~~~~l~~h~~~V~~l~~~--~~~l~s 127 (760)
......+.+|.+.|.+++|+|++.. ++++|+.|++|++|++.. +.++..+.+|...|.+++|+ +.++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~----~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPN----LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTT----EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCcc----EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 4456678999999999999997643 699999999999999864 34567889999999999997 567999
Q ss_pred EECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCC--
Q 004329 128 SSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGV-- 201 (760)
Q Consensus 128 gs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~-- 201 (760)
|+.|++|++||.. +....+.+|...|.++.++|++. +++|+.|++|++||.+ .+...+.+|...|.++.+.|..
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 9999999999974 67788899999999999999987 8899999999999965 4667888999999999999832
Q ss_pred -----eEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEE
Q 004329 202 -----GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 272 (760)
Q Consensus 202 -----~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~ 272 (760)
.+++++.|+.|++||+. ++....+.+|...|.+++|+|++ +|++++.||.|++|| .++++..+.+...|.+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 242 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE
Confidence 49999999999999985 56677788999999999999999 999999999999999 7778888888889999
Q ss_pred EEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEee
Q 004329 273 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 352 (760)
Q Consensus 273 v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~ 352 (760)
++|+|++.+++++.++.+++|+++++.....+...... ...........+..+++|+..+..+
T Consensus 243 ~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 243 LAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG-----------------YSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT-----------------CCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc-----------------cccCcCcceeEEEECCCCCEEEEee
Confidence 99999999766677778999999887665433211000 0000011233455677887766555
Q ss_pred CCceEEEEEeccc
Q 004329 353 GDNGVAYSWDMKE 365 (760)
Q Consensus 353 ~~~~~~~~w~~~~ 365 (760)
. ++.+++|+...
T Consensus 306 ~-Dg~i~vWd~~t 317 (319)
T 3frx_A 306 T-DNVIRVWQVMT 317 (319)
T ss_dssp T-TSCEEEEEEEE
T ss_pred c-CceEEEEEEee
Confidence 4 47899999654
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-31 Score=294.31 Aligned_cols=283 Identities=29% Similarity=0.558 Sum_probs=244.7
Q ss_pred ccCCCceEeEEeccCCCCE-EEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 4 IDFKEYQLSSELRGHEDDV-RGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V-~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
|....++....+.+|.+.| .++.++ +. |++|+.||+|++||+.+++ ....+.+|...|.+++|++ .
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~~~~~~--g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~--~--- 170 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRD--N--- 170 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEET--T---
T ss_pred ccCCCcceeEEecccCCCcEEEEEEc--CCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEecC--C---
Confidence 4445566778899999875 665554 45 9999999999999998765 5677889999999999973 2
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEe
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~ 159 (760)
++++|+.||.|++||+.+++.+..+.+|...|.++.++++.+++|+.||+|++||.. +....+.+|...|.++.+
T Consensus 171 --~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 171 --IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred --EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 599999999999999999999999999999999999999999999999999999874 677888899999999999
Q ss_pred CCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEE
Q 004329 160 PSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID 236 (760)
Q Consensus 160 ~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~ 236 (760)
....+++|+.||.|++||.. +....+.+|...|.++.+ .+..+++++.||.|++||+ +++.+..+.+|...+.++.
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence 33459999999999999954 566788899999999999 4566999999999999997 5778888999999999998
Q ss_pred EeCCCeEEEEeCCCcEEEEe--CCceEEEEe----cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 237 SHASGLIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 237 ~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~----~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
++++ .+++|+.||.|++|| .+.++..+. |...|++++|++ ..+++|+.||.|++||+.+++.+..+
T Consensus 327 ~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 327 LKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeee
Confidence 8644 999999999999999 777888886 677999999963 23899999999999999998876544
No 42
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-31 Score=293.01 Aligned_cols=273 Identities=20% Similarity=0.339 Sum_probs=229.1
Q ss_pred CEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 21 DVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 21 ~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
.++.|+|++++.|++| .|++|+|||..+++ ......+.+|...|++++|+|++. +|++|+.||.|++||++
T Consensus 107 y~~~l~wS~~n~lAvg-ld~tV~lWd~~tg~---~~~~~~~~~~~~~V~sv~fspdg~-----~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGD---ILQLLQMEQPGEYISSVAWIKEGN-----YLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TCBCEEECTTSEEEEE-ETTEEEEEETTTCC---EEEEEECCSTTCCEEEEEECTTSS-----EEEEEETTSCEEEEETT
T ss_pred cceeEEECCCCEEEEE-eCCEEEEEECCCCC---EEEEEEecCCCCcEEEEEECCCCC-----EEEEEECCCeEEEEEcC
Confidence 3567999987756655 59999999999876 222334467888999999999987 79999999999999999
Q ss_pred CCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEE
Q 004329 101 SGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW 176 (760)
Q Consensus 101 ~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iw 176 (760)
+++++..+.+|...+.++++++..+++|+.|+.+++||.. ..+..+.+|...+..+.+.+++. +++++.|+.+++|
T Consensus 178 ~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 178 QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 9999999999999999999999999999999999999875 56677889999999999999988 7899999999999
Q ss_pred eCCC------ceEEeecCCCceEEEEEeCCCe--EEE--EeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEE
Q 004329 177 KGKK------CAQTFVGHTDTVRGLSVMPGVG--IIS--ASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 177 d~~~------~~~~~~~h~~~V~~l~~~~~~~--l~s--~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s 245 (760)
+... .......|...|.+++|+|.+. +++ |+.|++|++||+..........+...+.++.|+|++ .+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence 9543 3456778999999999999543 444 458999999998644444444455678999999998 6665
Q ss_pred Ee--CCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 246 GS--EDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 246 ~s--~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
++ .|+.|+||| +++++..+. |.+.|++++|+|+|. +++|+.||+|++|++.+.....
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 54 799999999 778888886 899999999999998 9999999999999997655433
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-31 Score=294.33 Aligned_cols=282 Identities=25% Similarity=0.452 Sum_probs=249.4
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
|..||+.+.+...++.+|.+.|.+++|+ +..+++|+.||+|++||+.+++ ....+.+|...|.++.|++ .
T Consensus 141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~--~-- 210 (445)
T 2ovr_B 141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRCMHLHE--K-- 210 (445)
T ss_dssp EEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEET--T--
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEEEEecC--C--
Confidence 4679999999999999999999999998 3459999999999999998664 5677889999999999963 2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC--CceeEEeecCCcCeEEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v~~v~~ 158 (760)
.+++|+.||.|++||+.+++.+..+.+|...|.++.++++.+++|+.||.|++||. ++.+..+.+|...|.++.+
T Consensus 211 ---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 211 ---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp ---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred ---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 59999999999999999999999999999999999999999999999999999986 4677888899999999999
Q ss_pred eCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeec---CCCcE
Q 004329 159 IPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVG---HTAIV 232 (760)
Q Consensus 159 ~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~---h~~~v 232 (760)
....+++|+.||.|++||.. +....+.+|...+.++.+. +..+++++.||.|++||+ +++.+..+.+ |...|
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE
Confidence 33448999999999999954 5667888999999999986 457999999999999997 5777788876 88999
Q ss_pred EEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEE------ecCCcEEEEEEccCCc-EEEEEcCCc----EEEEeCCCC
Q 004329 233 YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI------EHPGCVWDAKFLENGD-IVTACSDGV----TRIWTVHSD 298 (760)
Q Consensus 233 ~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~------~~~~~v~~v~~~~~g~-lvt~~~dg~----I~vw~~~~~ 298 (760)
.+++++++ ++++|+.||.|++|| .++.+..+ .|.+.|++++|+|++. +++|+.||. |.+||++..
T Consensus 366 ~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 366 TCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEECCC-EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999643 999999999999999 77788777 4677999999999999 788888998 999999864
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.5e-33 Score=306.30 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=224.0
Q ss_pred CCCceEeEEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 6 FKEYQLSSELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 6 ~~~~~l~~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
+..+++.....+|...|+|++|+|. +. ||+|+.||+|+|||+.+++ ......+.+|.+.|++++|+|.+..
T Consensus 106 ~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p~~~~---- 178 (435)
T 4e54_B 106 LDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD---KPTFIKGIGAGGSITGLKFNPLNTN---- 178 (435)
T ss_dssp TTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS---CCEEECCCSSSCCCCEEEECSSCTT----
T ss_pred ccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC---ceeEEEccCCCCCEEEEEEeCCCCC----
Confidence 4567777888899999999999984 44 9999999999999998665 2234456789999999999985432
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeC--CCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQG--HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~--h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~ 158 (760)
+|++|+.||+|++||++++........ +...+++++|+ +..+++|+.||.|++||.. +.+..+.+|...|.+++|
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeee
Confidence 699999999999999987654443333 34457788886 6679999999999999985 666778899999999999
Q ss_pred eCCCc--EEEEECCCcEEEEeCCCce-----EEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCC
Q 004329 159 IPSGE--IVSGSSDTTIKLWKGKKCA-----QTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHT 229 (760)
Q Consensus 159 ~~~~~--l~tgs~dg~i~iwd~~~~~-----~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~ 229 (760)
+|++. +++|+.|+.|++||.+... ....+|...|++++|+|++. |++++.||.|++||+. +.....+..|.
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 99875 6789999999999965422 23457999999999999766 9999999999999974 56666666554
Q ss_pred C------cEEEEEEeCCC-eEEEEe------------CCCcEEEEe--CCceEEEEe--cCCcEEEE-EEccCCcEEEEE
Q 004329 230 A------IVYSIDSHASG-LIVSGS------------EDRFAKIWK--DGVCVQSIE--HPGCVWDA-KFLENGDIVTAC 285 (760)
Q Consensus 230 ~------~v~~v~~~p~~-~l~s~s------------~Dg~I~iwd--~~~~~~~~~--~~~~v~~v-~~~~~g~lvt~~ 285 (760)
. .+....|+|++ .+++++ .++.|++|| .+.++..+. |...|.++ +|+|+|.+++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA 418 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence 2 23345566666 454443 446899999 677777764 66788887 699999966667
Q ss_pred cCCcEEEEeCCCCee
Q 004329 286 SDGVTRIWTVHSDKV 300 (760)
Q Consensus 286 ~dg~I~vw~~~~~~~ 300 (760)
.|+.|+||++++++.
T Consensus 419 ~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 419 MGYHILIWSQQEART 433 (435)
T ss_dssp CSSEEEECCCC----
T ss_pred cCCcEEEEECCcCee
Confidence 799999999998875
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=293.14 Aligned_cols=278 Identities=19% Similarity=0.322 Sum_probs=229.3
Q ss_pred EeccCCCC--EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 14 ELRGHEDD--VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 14 ~l~gH~~~--V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
...+|... +.+++|+++ .+++++.||.|++||+.++. ....+. .|...|.+++|+|++. ++++|+.
T Consensus 86 ~~~~~~~~~~~~~~~~s~~-~l~~~~~d~~v~lw~~~~~~-----~~~~~~~~~~~~v~~v~~s~~~~-----~l~~~~~ 154 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNL-NVVAVALERNVYVWNADSGS-----VSALAETDESTYVASVKWSHDGS-----FLSVGLG 154 (401)
T ss_dssp ECTTCCCCTTCBCEEECTT-SEEEEEETTEEEEEETTTCC-----EEEEEECCTTCCEEEEEECTTSS-----EEEEEET
T ss_pred eCCCCcCCceEEEEeecCC-CEEEEECCCeEEEeeCCCCc-----EeEeeecCCCCCEEEEEECCCCC-----EEEEECC
Confidence 34477665 445666653 38999999999999998765 333333 3899999999999887 6999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~t 166 (760)
||.|++||+.+++.+..+.+|...|.+++|+++.+++|+.||.|++||.. .....+..|...|.++.|+|++. +++
T Consensus 155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999975 56778889999999999999987 889
Q ss_pred EECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe--EEEEe--CCCeEEEEecC-CceEEEeecCCCcEEEEEEeC
Q 004329 167 GSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG--IISAS--HDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 167 gs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~--l~s~s--~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p 239 (760)
|+.|+.|++||... ....+..|...|.+++|+|++. +++++ .|+.|++||+. ++.+..+ .|...|.+++|+|
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~ 313 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSP 313 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECS
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECC
Confidence 99999999999654 5567788999999999999543 55554 79999999975 4555555 5778999999999
Q ss_pred CC-eEEE--EeCCCcEEEEe--CCceEEEE---ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 240 SG-LIVS--GSEDRFAKIWK--DGVCVQSI---EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 240 ~~-~l~s--~s~Dg~I~iwd--~~~~~~~~---~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
++ .+++ |+.||.|++|| .+...... .|...|.+++|+|+|. +++++.||.|++|++.+++.+..
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99 7777 44899999999 44444433 3888999999999999 88999999999999999886653
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.9e-31 Score=291.94 Aligned_cols=279 Identities=29% Similarity=0.412 Sum_probs=239.0
Q ss_pred eEeEEeccCCCCE-EEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDV-RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V-~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
....++.+|.+.| .++.+. ++.|++|+.||+|++||+.+++ ....+.+|.+.|.+++|++++ .+++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~-~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~------~l~s~ 179 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE-DNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG------ILVSG 179 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT------EEEEE
T ss_pred cceEEEcCCCCCcEEEEEEC-CCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC------EEEEE
Confidence 4567899998885 666664 3459999999999999998665 677788999999999998876 49999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECCc-----------------------
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKGK----------------------- 141 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~----------------------- 141 (760)
+.||+|++||+++++.+..+.+|...|.++++. +..+++|+.||+|++||...
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 999999999999999999999999999999985 35599999999999998752
Q ss_pred --eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEE
Q 004329 142 --LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLW 215 (760)
Q Consensus 142 --~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iw 215 (760)
....+.+|...+.++. +++. +++|+.||.|++||.. +....+.+|...|.+++|+|++. +++++.||.|++|
T Consensus 260 ~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp TTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 2556778888888874 4444 8899999999999965 45667889999999999999765 9999999999999
Q ss_pred ec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEE
Q 004329 216 AL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRI 292 (760)
Q Consensus 216 d~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~v 292 (760)
|+ +++.+..+.+|...|.++.+++ .++++++.||.|++|| .+.......+...+..++|++++.+++++.||.|++
T Consensus 338 d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~i 416 (464)
T 3v7d_B 338 DLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 416 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence 97 5788889999999999999984 3999999999999999 555666666788899999999999555555999999
Q ss_pred EeCCCCeeech
Q 004329 293 WTVHSDKVADS 303 (760)
Q Consensus 293 w~~~~~~~~~~ 303 (760)
||+.+++.+..
T Consensus 417 wd~~~g~~~~~ 427 (464)
T 3v7d_B 417 YNLRSGKLVHA 427 (464)
T ss_dssp EETTTCCEEES
T ss_pred EECCCCcEEeh
Confidence 99999988764
No 47
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=288.47 Aligned_cols=280 Identities=14% Similarity=0.199 Sum_probs=227.0
Q ss_pred EeEEeccCCCCEEEEEEcCCCe--EEEEEC---CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC---CCCCC
Q 004329 11 LSSELRGHEDDVRGICVCDNVG--IATSSR---DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN---EEFPE 82 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~--l~tgs~---Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~~~~ 82 (760)
+...+.+|.+.|++++|+|++. +++|+. ||.|++||+.+++. ......+|...|.+++|+|+. .
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~---- 81 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----KLLREIEKAKPIKCGTFGATSLQQR---- 81 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----EEEEEEEESSCEEEEECTTCCTTTC----
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----cceeeecccCcEEEEEEcCCCCCCc----
Confidence 4455678999999999999885 556665 99999999986651 122334789999999999984 4
Q ss_pred cEEEEEeCCCeEEEEECCCCc-eEEEEeCCCccEEEEEe------c--CCeEEEEECCCeEEEEECC---ceeEEeecCC
Q 004329 83 GGLVSGGMDTMVLVWDLGSGE-KVQTLQGHKLQVTGVTL------D--NEDIVSSSVDSTLKRWRKG---KLVEFWEAHN 150 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~-~~~~l~~h~~~V~~l~~------~--~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~ 150 (760)
++++|+.||.|++||+.+++ .+..+.+|...|.++.| + ++.+++++.||.|++||.. .....+..|.
T Consensus 82 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 82 -YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp -CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred -eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 59999999999999999988 88999999999999965 3 5579999999999999875 2567776655
Q ss_pred c----CeEEEE----EeCCCc-EEEEECCCcEEEEeCCCce-EEeecCCCceEEEEEeC---CCe-EEEEeCCCeEEEEe
Q 004329 151 A----PIQTVI----RIPSGE-IVSGSSDTTIKLWKGKKCA-QTFVGHTDTVRGLSVMP---GVG-IISASHDCTIRLWA 216 (760)
Q Consensus 151 ~----~v~~v~----~~~~~~-l~tgs~dg~i~iwd~~~~~-~~~~~h~~~V~~l~~~~---~~~-l~s~s~dg~I~iwd 216 (760)
. .++++. +++++. +++++.||.|++||.+... .....|...|.+++|+| ++. +++++.||.|++||
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 4 888988 567776 7899999999999976543 34567899999999998 554 99999999999999
Q ss_pred cCC-ceEE-----EeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CC-------------------ceEEEEe-c
Q 004329 217 LTG-QVLM-----EMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DG-------------------VCVQSIE-H 266 (760)
Q Consensus 217 ~~~-~~~~-----~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~-------------------~~~~~~~-~ 266 (760)
+.. +... .+.+|...|++++|+|++ ++++++.||.|++|| .+ .++..+. |
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 743 2222 344899999999999998 799999999999999 21 2444454 8
Q ss_pred CCcEEEEEEccCCc-EE-EEEcCCcEEEEeCCCCe
Q 004329 267 PGCVWDAKFLENGD-IV-TACSDGVTRIWTVHSDK 299 (760)
Q Consensus 267 ~~~v~~v~~~~~g~-lv-t~~~dg~I~vw~~~~~~ 299 (760)
...|++++|+|+|+ ++ +++.||.|++|++.+..
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 88999999999999 76 79999999999998754
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.1e-32 Score=290.29 Aligned_cols=286 Identities=16% Similarity=0.236 Sum_probs=231.3
Q ss_pred ceEeEEe-ccCCCCEEEEEEcCC---Ce--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCC
Q 004329 9 YQLSSEL-RGHEDDVRGICVCDN---VG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 9 ~~l~~~l-~gH~~~V~~v~~~~~---~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 82 (760)
|+....+ .+|.+.|++++|+|+ +. +++++.++.|++||+.++.............|...|.+++|+|+... ..
T Consensus 7 ~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~ 85 (366)
T 3k26_A 7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT-SH 85 (366)
T ss_dssp CEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT-CC
T ss_pred EEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC-CC
Confidence 3433344 489999999999983 33 77788888999999986542111111112237788999999999531 01
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ceeEEe---ecCCcCeE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KLVEFW---EAHNAPIQ 154 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~~~~~---~~~~~~v~ 154 (760)
.++++|+.||.|++||+.+++.+..+.+|...|.+++|+ +..+++++.||.|++||.. +....+ ..|...|.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCcee
Confidence 269999999999999999999999999999999999996 4569999999999999975 555565 57999999
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCc--e----------------------------EEeecCCCceEEEEEeCCCeE
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKC--A----------------------------QTFVGHTDTVRGLSVMPGVGI 203 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~--~----------------------------~~~~~h~~~V~~l~~~~~~~l 203 (760)
+++|+|++. +++++.||.|++||.... . .....|...|.+++|+ +..+
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l 244 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLI 244 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEE
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEE
Confidence 999999987 889999999999997642 1 1223399999999999 6679
Q ss_pred EEEeCCCeEEEEecCC---------------ceEEEeecCCCcEEEEEEeCC--C-eEEEEeCCCcEEEEe--CCc----
Q 004329 204 ISASHDCTIRLWALTG---------------QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV---- 259 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~~---------------~~~~~~~~h~~~v~~v~~~p~--~-~l~s~s~Dg~I~iwd--~~~---- 259 (760)
++++.||.|++||+.. ..+..+.+|...|++++|+|+ + +|++++.||.|++|| .+.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999999999643 347778899999999999999 8 999999999999999 332
Q ss_pred eEEEEe-c--CCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 260 CVQSIE-H--PGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 260 ~~~~~~-~--~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
....+. | ...|++++|+|+++ +++++.||.|++||+.
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 334454 4 67999999999999 8999999999999985
No 49
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.1e-31 Score=276.45 Aligned_cols=268 Identities=20% Similarity=0.334 Sum_probs=230.0
Q ss_pred EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 22 VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 22 V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
.++|+|++++.|++| .|++|+|||+.+++ ........+|...|++++|+|++. ++++|+.||+|++||+++
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~---~~~~~~~~~~~~~V~~v~~~~~~~-----~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGD---ILQLLQMEQPGEYISSVAWIKEGN-----YLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCC---EEEEEECCSTTCCEEEEEECTTSS-----EEEEEETTSEEEEEETTT
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCC---EEEEEEecCCCCeEEEEEECCCCC-----EEEEEECCCcEEEeecCC
Confidence 578999998856555 59999999999776 222233457888999999999988 799999999999999999
Q ss_pred CceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC---ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEe
Q 004329 102 GEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG---KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWK 177 (760)
Q Consensus 102 ~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd 177 (760)
++++..+.+|...+.++.+.+..+++++.++.+++|+.. .....+.+|...+..+.+.+++. +++++.|+.|++||
T Consensus 99 ~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 999999999999999999999999999999999999864 56677889999999999999987 78999999999999
Q ss_pred CCC------ceEEeecCCCceEEEEEeCCCe----EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEE
Q 004329 178 GKK------CAQTFVGHTDTVRGLSVMPGVG----IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSG 246 (760)
Q Consensus 178 ~~~------~~~~~~~h~~~V~~l~~~~~~~----l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~ 246 (760)
... .......|...|.++.++|.+. +++++.+++|++||...........+...+..+.++|++ .++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 258 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258 (318)
T ss_dssp SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEE
Confidence 653 2345667889999999999543 346678999999998877777777888999999999998 55544
Q ss_pred --eCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 247 --SEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 247 --s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+.|+.|++|| +++++..+. |.+.|++++|+|+|. +++|+.||+|++||+.+.
T Consensus 259 sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 4899999999 778888887 889999999999998 999999999999998754
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.4e-32 Score=292.47 Aligned_cols=276 Identities=16% Similarity=0.189 Sum_probs=233.1
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
+..|.+.|++++|+|++. |++|+.||.|++||+.+++ +.....+.+|...|.+++|+|++. ++++++.||.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-----~l~~~~~dg~ 75 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSN-----RIVTCGTDRN 75 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---EEEEEEEECCSSCEEEEEEETTTT-----EEEEEETTSC
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---EEeeeeecCCCCcccEEEEeCCCC-----EEEEEcCCCe
Confidence 456999999999999998 9999999999999998543 335677889999999999999887 6999999999
Q ss_pred EEEEECCCCceEEE--EeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--c----eeEEeecCCcCeEEEEEeCCCc
Q 004329 94 VLVWDLGSGEKVQT--LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--K----LVEFWEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 94 I~vwd~~~~~~~~~--l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~----~~~~~~~~~~~v~~v~~~~~~~ 163 (760)
|++||+.+++.... +..|...|.+++|+ ++.+++++.||.|++||.. . .......|...|.++.|+|++.
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 99999988875544 46799999999997 5679999999999999864 2 2233357899999999999987
Q ss_pred -EEEEECCCcEEEEeC--------------------CCceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCc
Q 004329 164 -IVSGSSDTTIKLWKG--------------------KKCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQ 220 (760)
Q Consensus 164 -l~tgs~dg~i~iwd~--------------------~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~ 220 (760)
+++++.||.|++||. .+....+..|...|.+++|+|++. +++++.||.|++||+ +++
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 889999999999994 356667788999999999999775 999999999999997 578
Q ss_pred eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C--Cce--E--------------------------------
Q 004329 221 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D--GVC--V-------------------------------- 261 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~--~~~--~-------------------------------- 261 (760)
.+..+..|...|.+++|+|++ +++++ .|+.|++|+ . +.. .
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 888999999999999999999 55555 999999999 3 210 0
Q ss_pred ----EEE--ecCCcEEEEEEc-cCC---c-EEEEEcCCcEEEEeCCCCe
Q 004329 262 ----QSI--EHPGCVWDAKFL-ENG---D-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 262 ----~~~--~~~~~v~~v~~~-~~g---~-lvt~~~dg~I~vw~~~~~~ 299 (760)
..+ .|...|++++|+ ++| . +++|+.||.|++|++.+++
T Consensus 315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 315 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 112 488899999976 665 6 8999999999999987654
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-31 Score=282.14 Aligned_cols=293 Identities=21% Similarity=0.298 Sum_probs=230.1
Q ss_pred ceeeeEeeCCCCCeEEEEE-----eC-CCCCCCCcEEEEEeCCCeEEEEECCCC-------ceEEEEeCCCccEEEEEec
Q 004329 55 YHSSKILLGHTSFVGPLAW-----IS-PNEEFPEGGLVSGGMDTMVLVWDLGSG-------EKVQTLQGHKLQVTGVTLD 121 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~-----~~-~~~~~~~~~l~sgs~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~l~~~ 121 (760)
......+.+|.+.|++++| ++ ++. +|++|+.|++|++||+.+. .+...+.+|...|.+++|+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-----~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-----VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS 85 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-----EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-----EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC
Confidence 3456678999999999999 55 444 7999999999999998743 4567789999999999997
Q ss_pred --CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCc-eEEee---cCCCce
Q 004329 122 --NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC-AQTFV---GHTDTV 192 (760)
Q Consensus 122 --~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~-~~~~~---~h~~~V 192 (760)
+..+++|+.|++|++||.. +....+.+|...|.+++|+|++. +++|+.|++|++||.... ..... +|...|
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 5669999999999999974 67788899999999999999987 889999999999997542 22332 688999
Q ss_pred EEEEEeCCC-----------eEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---C
Q 004329 193 RGLSVMPGV-----------GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---D 257 (760)
Q Consensus 193 ~~l~~~~~~-----------~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~ 257 (760)
.+++|+|++ .+++++.||.|++||.+++....+.+|...|.+++|+|++ +|++|+.||.|++|| .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999964 5999999999999998888888899999999999999999 999999999999999 2
Q ss_pred CceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCcee
Q 004329 258 GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL 337 (760)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l 337 (760)
......+.+...|++++|+|++.+++++.|+.|++|++.+++......+.... ... .. . ..-....+.
T Consensus 246 ~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~~------~~-~---~~~~~~~v~ 313 (343)
T 2xzm_R 246 TYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP--ITK------AE-G---QKGKNPQCT 313 (343)
T ss_dssp SSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--GGG------BT-T---BCCSCCCEE
T ss_pred cccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--chh------hh-h---hcCCCCceE
Confidence 33455566777899999999999888889999999999877654311111000 000 00 0 000111234
Q ss_pred eccCCCcceEEEEeeCCceEEEEEeccc
Q 004329 338 QIPGTNAGQTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 338 ~~~g~~~g~~~~v~~~~~~~~~~w~~~~ 365 (760)
.+.++++|...+..+ .++.+++|+...
T Consensus 314 ~~~~sp~g~~l~sg~-~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 314 SLAWNALGKKLFAGF-TDGVIRTFSFET 340 (343)
T ss_dssp EEEECSSSCCEEEEE-TTSEEEEEEEEE
T ss_pred EEEECCCCCeEEEec-CCceEEEEEEEc
Confidence 455677777665544 458899998654
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=290.83 Aligned_cols=298 Identities=15% Similarity=0.240 Sum_probs=233.5
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeE--------eeCCCCCeEEEE
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKI--------LLGHTSFVGPLA 72 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~--------~~~h~~~V~~l~ 72 (760)
.|++...+....+.+|.+.|++++|+| ++. |++|+.||.|++||+.++.......... ..+|...|.+++
T Consensus 27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence 466666777888999999999999999 888 9999999999999998765322211111 135999999999
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-----CCeEEEEECCCeEEEEECC--ceeEE
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-----NEDIVSSSVDSTLKRWRKG--KLVEF 145 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~v~vwd~~--~~~~~ 145 (760)
|+|++.. ++++++.||.|++||+.+++....+. +...+.++.+. +..+++++.||.|++||.. +....
T Consensus 107 ~~~~~~~----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 107 WYPHDTG----MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp ECTTCTT----CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EccCCCc----EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 9995443 59999999999999999998888877 77888898885 2369999999999999874 67788
Q ss_pred eecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC---ceEEe---------------ecCCCceEEEEEeCCCe-EE
Q 004329 146 WEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK---CAQTF---------------VGHTDTVRGLSVMPGVG-II 204 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~---~~~~~---------------~~h~~~V~~l~~~~~~~-l~ 204 (760)
+..|...|.+++|+|++. +++|+.||.|++||.+. ....+ ..|...|.+++|+|++. ++
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 889999999999999986 77999999999999654 22333 57889999999999776 99
Q ss_pred EEeCCCeEEEEecCC-ceEEEeecC------CCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEE
Q 004329 205 SASHDCTIRLWALTG-QVLMEMVGH------TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 274 (760)
Q Consensus 205 s~s~dg~I~iwd~~~-~~~~~~~~h------~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~ 274 (760)
+++.||.|++||+.. +......++ ..........+.+.+++++.|+.|++|| .+.++..+. |.+.|++++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 999999999999753 333222221 1111222222233788888999999999 777888877 888999999
Q ss_pred EccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 275 FLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 275 ~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|+|++. +++++.||.|++|++.+++.+....
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC--------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 999999 8999999999999999988765443
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7e-31 Score=303.15 Aligned_cols=282 Identities=19% Similarity=0.243 Sum_probs=192.1
Q ss_pred CccccCCCceEeEEeccCCC---CEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEe-e---CCCCCeEEE
Q 004329 1 MMDIDFKEYQLSSELRGHED---DVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL-L---GHTSFVGPL 71 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~---~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~---~h~~~V~~l 71 (760)
|..||..++++..++.+|.. .|++++|+|+ +. |++++.||.|++||+.+++ ....+ . .|...|.++
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~v~~~ 259 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-----FLKYIEDDQEPVQGGIFAL 259 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-----EEEECCBTTBCCCSCEEEE
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----EeEEecccccccCCceEEE
Confidence 46799999999999999999 9999999999 88 9999999999999998665 45555 5 899999999
Q ss_pred EEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC----CccEEEEEec-CCeEEEEECCCeEEEEECC--ceeE
Q 004329 72 AWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH----KLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--KLVE 144 (760)
Q Consensus 72 ~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--~~~~ 144 (760)
+|+ ++. ++++++.||.|++||+.+++.+..+..+ ...+.++.+. ++.+++++.||.|++||.. +...
T Consensus 260 ~~~-~~~-----~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 260 SWL-DSQ-----KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp EES-SSS-----EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred EEc-CCC-----EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence 999 665 6999999999999999999999888876 4677888885 7889999999999999985 5666
Q ss_pred EeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-------
Q 004329 145 FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL------- 217 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~------- 217 (760)
.+.+|...|.++++ |+ +++++.||.|++|+.. ... ..|...|.++++.++..+++++.|+.|++||+
T Consensus 334 ~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~-~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 334 TISGHNKGITALTV-NP--LISGSYDGRIMEWSSS-SMH--QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EECCCSSCEEEEET-TT--TEEEETTSCEEETTTT-EEE--CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred EEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEch-hhc--CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 77778888887777 65 6666666666666654 111 44555555555533444555555554444442
Q ss_pred ----------------------------CCceEEEeecCCCcEEEEEEeCCCeEEEEeC-CCcEEEEe--CCceE-EEE-
Q 004329 218 ----------------------------TGQVLMEMVGHTAIVYSIDSHASGLIVSGSE-DRFAKIWK--DGVCV-QSI- 264 (760)
Q Consensus 218 ----------------------------~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~-Dg~I~iwd--~~~~~-~~~- 264 (760)
+++.+..+. |...+.+++++ ..++++++. |+.|++|| .+... ..+
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~ 485 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 485 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSS
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccC
Confidence 444444444 44444555555 334444444 55555554 11111 222
Q ss_pred ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 265 EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 265 ~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.|...|++++|+|+|+ +++++.||.|++|++.+++..
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence 2444455555555544 444444555555555444443
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-31 Score=277.69 Aligned_cols=237 Identities=21% Similarity=0.335 Sum_probs=180.9
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC--CCCCCCcEEEEE
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP--NEEFPEGGLVSG 88 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~~~~~l~sg 88 (760)
+..+.+|.+.|++++|+|+++ |+||+.|++|+|||+.... ......+.+|.+.|.+++|+++ +. +|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---~~~~~~l~gH~~~V~~v~~s~~~~g~-----~l~s~ 73 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGT-----ILASC 73 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---BCCCEEECCCSSCEEEEEECCGGGCS-----EEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---cEEEEEEccccCCeEEEEecCCCcCC-----EEEEE
Confidence 456889999999999999998 9999999999999997432 2356788999999999999875 44 69999
Q ss_pred eCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECCc----eeEEeecCCcCeEEEEE
Q 004329 89 GMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKGK----LVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 89 s~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~v~~v~~ 158 (760)
+.||+|++||+.+++ .+..+.+|...|.+++|+ +..+++++.||+|++||... ....+.+|...|.++.|
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence 999999999998874 566788899999999997 34699999999999998752 24567789999999999
Q ss_pred eCCC--------------cEEEEECCCcEEEEeCCC------ceEEeecCCCceEEEEEeCCC----eEEEEeCCCeEEE
Q 004329 159 IPSG--------------EIVSGSSDTTIKLWKGKK------CAQTFVGHTDTVRGLSVMPGV----GIISASHDCTIRL 214 (760)
Q Consensus 159 ~~~~--------------~l~tgs~dg~i~iwd~~~------~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~I~i 214 (760)
+|++ .+++|+.|++|++||.+. ....+.+|...|++++|+|++ .+++++.|++|++
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 9863 366777777777776432 334566677777777777752 3777777777777
Q ss_pred EecCCc----eEEEe--ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 215 WALTGQ----VLMEM--VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 215 wd~~~~----~~~~~--~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
||++.. ....+ ..|...|.+++|+|++ +|++++.|+.|++|+
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 775431 11222 3456667777777766 667777777777776
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-31 Score=282.20 Aligned_cols=291 Identities=22% Similarity=0.383 Sum_probs=227.5
Q ss_pred ceeeeEeeCCCC-CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE---EEeCCCccEEEEEec--CCeEEEE
Q 004329 55 YHSSKILLGHTS-FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ---TLQGHKLQVTGVTLD--NEDIVSS 128 (760)
Q Consensus 55 ~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~---~l~~h~~~V~~l~~~--~~~l~sg 128 (760)
......+.+|.. .|.+++|+|++. +|++|+.|++|++||+.++.... ...+|...|.+++|+ +++|++|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-----~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-----LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-----CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-----EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence 346677888987 999999999987 69999999999999998876432 236899999999997 5679999
Q ss_pred ECCCeEEEEECC----ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEe
Q 004329 129 SVDSTLKRWRKG----KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 129 s~dg~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~ 198 (760)
+.|+++++|+.. .+...+.+|...|.+++|+|++. +++|+.|++|++||... +...+.+|...|.+++|+
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 999999999864 35677889999999999999987 88999999999999543 345678899999999999
Q ss_pred CCCe-EEEEeCCCeEEEEecCCc---eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC--C-------------
Q 004329 199 PGVG-IISASHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD--G------------- 258 (760)
Q Consensus 199 ~~~~-l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~--~------------- 258 (760)
|++. +++++.|++|++||.... +...+.+|...|++++|+|++ +|++++.|++|++||. .
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9776 999999999999997543 456788999999999999999 9999999999999981 1
Q ss_pred --ceEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCC
Q 004329 259 --VCVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPG 333 (760)
Q Consensus 259 --~~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~ 333 (760)
.++..+. |...|++++|+|++. +++++.|+.|++|+...+...... ...+. ........
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~----------~~~~~------~~~~~~h~ 303 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP----------TFSLT------AHLHQAHS 303 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC----------CEEEE------EEETTSSS
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee----------eEEEE------eeeccccc
Confidence 2333443 777999999999988 999999999999998765421100 00000 00001112
Q ss_pred CceeeccCCCcceEEEEeeCCceEEEEEecccc
Q 004329 334 LEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQ 366 (760)
Q Consensus 334 ~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~ 366 (760)
..+..+.+++++...++..++++.+++|+...+
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 233444556666545666666788999986554
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-30 Score=290.99 Aligned_cols=284 Identities=26% Similarity=0.341 Sum_probs=240.5
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
|..||+.+.+...++.+|.+.|++++|++++.+++|+.||+|++||+.++. ....+.+|...|.+++|++...
T Consensus 144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~-- 216 (464)
T 3v7d_B 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-----CTHVFEGHNSTVRCLDIVEYKN-- 216 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEEESSS--
T ss_pred EEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc-----EEEEECCCCCccEEEEEecCCC--
Confidence 467999999999999999999999999999999999999999999998665 6677889999999999996432
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc-----------------------eEEEEeCCCccEEEEEecCCeEEEEECCCeEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGE-----------------------KVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRW 137 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~-----------------------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vw 137 (760)
..++++|+.||.|++||+.++. ....+.+|...|.++..+++.+++|+.||.|++|
T Consensus 217 -~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 217 -IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp -CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred -CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEE
Confidence 1279999999999999998765 2556789999999999999999999999999999
Q ss_pred ECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeE
Q 004329 138 RKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTI 212 (760)
Q Consensus 138 d~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I 212 (760)
|.. +.+..+.+|...|.++.++|++. +++|+.||.|++||.. +....+.+|...|.+++++ +..+++++.||.|
T Consensus 296 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v 374 (464)
T 3v7d_B 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAADGSI 374 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSEE
T ss_pred ECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcE
Confidence 975 67778889999999999999987 8899999999999964 5667888999999999998 4679999999999
Q ss_pred EEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE--EecCCcEEEEEEccCCcEEEEEcC
Q 004329 213 RLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS--IEHPGCVWDAKFLENGDIVTACSD 287 (760)
Q Consensus 213 ~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~--~~~~~~v~~v~~~~~g~lvt~~~d 287 (760)
++||+..........|...+..+++++++ ++++++ ||.|++|| .++++.. ..|...|++++|+++.-+++++.|
T Consensus 375 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp EEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEET
T ss_pred EEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeC
Confidence 99998654433334577788888999999 888877 99999999 6777765 347789999999732225566667
Q ss_pred CcEEEEe
Q 004329 288 GVTRIWT 294 (760)
Q Consensus 288 g~I~vw~ 294 (760)
|.+.+|-
T Consensus 454 g~~~i~~ 460 (464)
T 3v7d_B 454 GQSFLEI 460 (464)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 7665554
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-31 Score=287.38 Aligned_cols=240 Identities=20% Similarity=0.242 Sum_probs=200.8
Q ss_pred EeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 11 LSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+.....+|...|++++|+|++.+++++.||+|++||+.+++.. ........+|...|.+++|+|++. +|++|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~-----~l~sgs~ 159 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL-LVNKFAKYEHDDIVKTLSVFSDGT-----QAVSGGK 159 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSSS-----EEEEEET
T ss_pred EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecccccee-EEEeeccCCCCCCEEEEEECCCCC-----EEEEEeC
Confidence 3444567999999999999999999999999999999866522 122334568999999999999987 6999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec--C-CeEEEEECCCeEEEEECC--ceeEE--eecCCcCeEEEEEeCCCc
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--N-EDIVSSSVDSTLKRWRKG--KLVEF--WEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~v~vwd~~--~~~~~--~~~~~~~v~~v~~~~~~~ 163 (760)
||.|++||+.+++++..+.+|...|.+++|+ + ..+++++.||+|++||.. ++... ...|...+.+++|+|++.
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 9999999999999999999999999999996 2 359999999999999975 33333 335677899999999753
Q ss_pred --EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCC-e-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEE
Q 004329 164 --IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGV-G-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 164 --l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~ 237 (760)
+++|+.|+.|++||.+ +..+.+.+|...|++++|+|++ . +++|+.|++|++||++...+....+|...|++++|
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 7789999999999965 4677889999999999999965 3 88999999999999877666677799999999999
Q ss_pred eC-CC-eEEEEeCCCcEEEEe
Q 004329 238 HA-SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 238 ~p-~~-~l~s~s~Dg~I~iwd 256 (760)
+| ++ +|++++.||+|++|+
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEE
T ss_pred eCCCCCEEEEEcCCCeEEEEE
Confidence 98 56 999999999999999
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=281.60 Aligned_cols=251 Identities=22% Similarity=0.330 Sum_probs=201.7
Q ss_pred CccccCCC--ceEeEEe-cc-CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC--ccceeeeEeeCCCCCeEEEEE
Q 004329 1 MMDIDFKE--YQLSSEL-RG-HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK--RKYHSSKILLGHTSFVGPLAW 73 (760)
Q Consensus 1 I~~~d~~~--~~l~~~l-~g-H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~--~~~~~~~~~~~h~~~V~~l~~ 73 (760)
|..||+.. +++...+ .+ |.+.|++++|+|++. |++|+.|++|++|++..... ........+.+|...|.+++|
T Consensus 36 i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 115 (330)
T 2hes_X 36 IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115 (330)
T ss_dssp EEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEE
T ss_pred EEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE
Confidence 35677765 4677777 45 999999999999998 99999999999999864321 123456678899999999999
Q ss_pred eCCCCCCCCcEEEEEeCCCeEEEEECCC----CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC----cee
Q 004329 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGS----GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG----KLV 143 (760)
Q Consensus 74 ~~~~~~~~~~~l~sgs~dg~I~vwd~~~----~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~----~~~ 143 (760)
+|++. +|++|+.|++|++||+.. .+++..+.+|...|.+++|+ +..|++|+.|++|++||.. .++
T Consensus 116 sp~g~-----~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 116 SNDGY-----YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190 (330)
T ss_dssp CTTSC-----EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCCCC-----EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE
Confidence 99987 799999999999999943 25677889999999999997 5679999999999999863 467
Q ss_pred EEeecCCcCeEEEEEeCC--Cc-EEEEECCCcEEEEeCCC----------ceEEeec-CCCceEEEEEeCCCeEEEEeCC
Q 004329 144 EFWEAHNAPIQTVIRIPS--GE-IVSGSSDTTIKLWKGKK----------CAQTFVG-HTDTVRGLSVMPGVGIISASHD 209 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~--~~-l~tgs~dg~i~iwd~~~----------~~~~~~~-h~~~V~~l~~~~~~~l~s~s~d 209 (760)
..+.+|...|+++.|+|+ +. +++|+.|++|++||... +...+.. |...|.+++|++++.+++++.|
T Consensus 191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~d 270 (330)
T 2hes_X 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD 270 (330)
T ss_dssp EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETT
T ss_pred EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCC
Confidence 788999999999999998 44 88999999999998542 2334444 8999999999998889999999
Q ss_pred CeEEEEecCCc---eEEE-eecCCC-cEEEEEEeC--CC-eEEEEeCCCcEEEEe
Q 004329 210 CTIRLWALTGQ---VLME-MVGHTA-IVYSIDSHA--SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 210 g~I~iwd~~~~---~~~~-~~~h~~-~v~~v~~~p--~~-~l~s~s~Dg~I~iwd 256 (760)
|.|++||.... .... ..+|.. .|.+++|+| ++ +|++|+.||+|++||
T Consensus 271 g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 271 GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred CEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 99999997543 2322 357887 899999999 56 899999999999998
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-32 Score=298.71 Aligned_cols=281 Identities=12% Similarity=0.219 Sum_probs=225.3
Q ss_pred ccCCCceEeEEe-ccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCC---CCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 4 IDFKEYQLSSEL-RGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDP---SDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 4 ~d~~~~~l~~~l-~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~---~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
|+ .+.+++.++ .+|.+.|++++|+| ++. |++|+.||+|++||+.+ +. ....... .+|...|.+++|+|++
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~-~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VYSSSLT-YDCSSTVTQITMIPNF 123 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CCSCSEE-EECSSCEEEEEECTTS
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--ccceeee-ccCCCCEEEEEEeCCC
Confidence 56 457888888 89999999999999 887 99999999999999875 22 1112222 2599999999999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEECC---CCceEEEEeC------------CCccEEEEEec----CCeEEEEECCCeEEEEE
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLG---SGEKVQTLQG------------HKLQVTGVTLD----NEDIVSSSVDSTLKRWR 138 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~---~~~~~~~l~~------------h~~~V~~l~~~----~~~l~sgs~dg~v~vwd 138 (760)
. ++++|+.||.|++||++ +++....+.+ +...+.++.+. +..+++|+.||.|++||
T Consensus 124 ~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 124 D-----AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp S-----EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEE
T ss_pred C-----EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 7 69999999999999994 5555443332 45566666642 55699999999999999
Q ss_pred CC--ceeEEeec--CCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEee-cCCCceEEEEEeC----CCe-EEE
Q 004329 139 KG--KLVEFWEA--HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFV-GHTDTVRGLSVMP----GVG-IIS 205 (760)
Q Consensus 139 ~~--~~~~~~~~--~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~-~h~~~V~~l~~~~----~~~-l~s 205 (760)
.. +.+..+.. |...|++++|+|++. +++|+.||.|++||.+. +...+. .|...|.+++++| ++. +++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 74 66777777 889999999999987 78999999999999764 445555 7888999997776 454 999
Q ss_pred EeCCCeEEEEecC-CceEEEeec--------------------------CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-
Q 004329 206 ASHDCTIRLWALT-GQVLMEMVG--------------------------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK- 256 (760)
Q Consensus 206 ~s~dg~I~iwd~~-~~~~~~~~~--------------------------h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd- 256 (760)
++.||.|++||+. ++++..+.+ |...|++++|+ ++ +|++|+.|+.|++||
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 9999999999985 666666654 45568889999 55 999999999999999
Q ss_pred -CCceEEEEe--------------------------------------cCCcEEEEEEccC--Cc-EEEEEcCCcEEEEe
Q 004329 257 -DGVCVQSIE--------------------------------------HPGCVWDAKFLEN--GD-IVTACSDGVTRIWT 294 (760)
Q Consensus 257 -~~~~~~~~~--------------------------------------~~~~v~~v~~~~~--g~-lvt~~~dg~I~vw~ 294 (760)
.+++...+. |...|++++|+++ +. +++|+.||.|++|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 444444443 7789999999998 55 89999999999995
No 60
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-30 Score=276.73 Aligned_cols=242 Identities=21% Similarity=0.285 Sum_probs=213.4
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCe
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDST 133 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~ 133 (760)
.....+.+|...|++++|+|++. +|++|+.||+|++||..+++....+..|...|.+++|+ +..+++|+.|+.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-----RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-----EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 35677899999999999999987 79999999999999999999999999999999999997 667999999999
Q ss_pred EEEEECC--------ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCC--
Q 004329 134 LKRWRKG--------KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPG-- 200 (760)
Q Consensus 134 v~vwd~~--------~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~-- 200 (760)
+++|+.. .....+..|...|.++.|+|++. +++++.|++|++||.. +....+.+|...|.+++++|+
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 9999763 34567788999999999999986 8999999999999954 567788999999999999873
Q ss_pred -CeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEec---CCcEEE
Q 004329 201 -VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEH---PGCVWD 272 (760)
Q Consensus 201 -~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~---~~~v~~ 272 (760)
..+++|+.||+|++||+ +++++..+.+|...|.+++|+|++ .+++++.|++|++|| .+..+..+.+ ...+.+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 35999999999999997 577888899999999999999999 999999999999999 4555655553 237899
Q ss_pred EEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 273 AKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 273 v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
++|+|+|. +++|+.||.|++||+.+++.+.
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 99999999 8889999999999998876543
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-31 Score=281.88 Aligned_cols=273 Identities=18% Similarity=0.249 Sum_probs=228.3
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
|.+.|.+++|+|+|+ ++++..++.+..|..... .......+|...|.+++|+|++. ++++++ ||.|++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~-----~l~~~~-dg~i~i 76 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTR-----HVYTGG-KGCVKV 76 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEECSSSS-----EEEEEC-BSEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-----cccceeccCCCceEEEEEecCCc-----EEEEcC-CCeEEE
Confidence 567899999999999 777777777766654322 12334457999999999999987 678887 999999
Q ss_pred EECCCCce---EEEEe--CCCccEEEEEec--CCeEEEEECCCeEEEEECCc----eeEEeecCCcCeEEEEEeCCCc-E
Q 004329 97 WDLGSGEK---VQTLQ--GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK----LVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 97 wd~~~~~~---~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
||+.+++. ...+. +|...|.+++|+ ++.+++++.||.|++||... ....+..|...+.++.|+|++. +
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEE
Confidence 99987653 33343 799999999998 55699999999999999753 4566778999999999999987 7
Q ss_pred EEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC
Q 004329 165 VSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
++++.||.|++||... ....+..|...|.+++|+|++. +++++.||.|++||+..........|...+.+++|+|++
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS
T ss_pred EEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCC
Confidence 8999999999999654 5567788999999999999765 999999999999998755554455688999999999999
Q ss_pred -eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 242 -LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 242 -~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
.+++++.|+.|++|| .+.......|...|.+++|+|+++ +++++.||.|++|++.+++..
T Consensus 237 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 237 EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999 445555556888999999999999 889999999999999988765
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=298.70 Aligned_cols=272 Identities=11% Similarity=0.152 Sum_probs=218.7
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
.++.|.+.|++++|+|++. |++|+.||.|++||+.++. +.....+.+|...|.+++|+|++. +|++|+.||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~s~d~ 77 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---WKHARTFSDHDKIVTCVDWAPKSN-----RIVTCSQDR 77 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---EEECCCBCCCSSCEEEEEECTTTC-----CEEEEETTS
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---eEEEEEEecCCceEEEEEEeCCCC-----EEEEEeCCC
Confidence 3455788999999999998 9999999999999998552 235667889999999999999987 599999999
Q ss_pred eEEEEECCCCc---eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc-----eeEEeec-CCcCeEEEEEeCC
Q 004329 93 MVLVWDLGSGE---KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK-----LVEFWEA-HNAPIQTVIRIPS 161 (760)
Q Consensus 93 ~I~vwd~~~~~---~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~-----~~~~~~~-~~~~v~~v~~~~~ 161 (760)
.|++||+.+++ ....+.+|...|.+++|+ +..+++++.|+.|++||... ....+.. |...|.+++|+|+
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 99999999877 677788999999999997 56699999999999998753 3567777 9999999999999
Q ss_pred Cc-EEEEECCCcEEEEeCC--------------------CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-
Q 004329 162 GE-IVSGSSDTTIKLWKGK--------------------KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT- 218 (760)
Q Consensus 162 ~~-l~tgs~dg~i~iwd~~--------------------~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~- 218 (760)
+. +++++.|+.|++||.. ++...+ +|...|.+++|+|++. +++++.||.|++||+.
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 87 8899999999999963 233445 8999999999999776 9999999999999975
Q ss_pred Cce----EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCce----------------------------E---
Q 004329 219 GQV----LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVC----------------------------V--- 261 (760)
Q Consensus 219 ~~~----~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~----------------------------~--- 261 (760)
++. +..+.+|...|.+++|+|++ ++++++.|+.+ +|+ .... .
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 444 67788999999999999999 77777766655 665 2000 0
Q ss_pred ------EEE-----------------ecCCcEEEEEEccCC-----cEEEEEcCCcEEEEeC
Q 004329 262 ------QSI-----------------EHPGCVWDAKFLENG-----DIVTACSDGVTRIWTV 295 (760)
Q Consensus 262 ------~~~-----------------~~~~~v~~v~~~~~g-----~lvt~~~dg~I~vw~~ 295 (760)
..+ .|.+.|+++++.+.+ .+++++.||.|++||+
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 001 178899999976643 3999999999999985
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.8e-30 Score=273.65 Aligned_cols=310 Identities=21% Similarity=0.343 Sum_probs=233.8
Q ss_pred EEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-----eEEEEe
Q 004329 35 TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-----KVQTLQ 109 (760)
Q Consensus 35 tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-----~~~~l~ 109 (760)
+|...|+-.+|-.... ........++.+|.+.|++|+|+|++.. +|++|+.||+|++||+.+.+ +...+.
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~sp~~~~----~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~ 83 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIATTPQFPD----MILSASRDKTIIMWKLTRDETNYGIPQRALR 83 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTT----EEEEEETTSCEEEEEECCSSSCSEEEEEEEC
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEEeCCCCC----EEEEEcCCCeEEEEECCCCCcccceeeEEEe
Confidence 4444455444432211 1234456678999999999999998643 69999999999999987653 567789
Q ss_pred CCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE-
Q 004329 110 GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ- 183 (760)
Q Consensus 110 ~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~- 183 (760)
+|...|.+++|+ +.++++++.|+.|++|+.. ........+...+....+.+++. +++|+.|+.+++||......
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 999999999997 5669999999999999875 45555667788888999999877 88999999999999664332
Q ss_pred --EeecCCCceEEEEEeCCC---eEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 184 --TFVGHTDTVRGLSVMPGV---GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 184 --~~~~h~~~V~~l~~~~~~---~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
...+|...+..++++++. .+++++.|+.|++||+. ++.+..+.+|...|++++|+|++ +|++|+.|+.|++||
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 345789999999998843 37899999999999975 56778888999999999999999 999999999999999
Q ss_pred --CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCC
Q 004329 257 --DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGL 334 (760)
Q Consensus 257 --~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~ 334 (760)
...++..+.+...|.+++|+|++.+++++.|+.|++||++++.....+....... .......
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~h~~ 307 (340)
T 4aow_A 244 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST----------------SSKAEPP 307 (340)
T ss_dssp TTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-----------------------CCCC
T ss_pred eccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceee----------------eccCCCC
Confidence 7778888888889999999999999999999999999999887765443111000 0011122
Q ss_pred ceeeccCCCcceEEEEeeCCceEEEEEecccc
Q 004329 335 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQ 366 (760)
Q Consensus 335 ~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~ 366 (760)
.+..+..+++|...+.. +.++.+++|+.+.|
T Consensus 308 ~v~~l~~s~dg~~l~sg-s~Dg~v~iW~~~tG 338 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAG-YTDNLVRVWQVTIG 338 (340)
T ss_dssp CEEEEEECTTSSEEEEE-ETTSCEEEEEEEC-
T ss_pred CEEEEEECCCCCEEEEE-eCCCEEEEEeCCCc
Confidence 33344556677765554 44588999997765
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-31 Score=291.41 Aligned_cols=284 Identities=21% Similarity=0.332 Sum_probs=229.5
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS 132 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg 132 (760)
..+...+.+|.+.|++++|+|++. +|++|+.||+|++||..+++....+..|...|.+++|+ +..+++|+.|+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-----~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-----CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eEEeecccccccEEEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 346778999999999999999987 59999999999999999999999999999999999997 66799999999
Q ss_pred eEEEEECCc---------eeEEeecCCcCeEEEEEeCCC--cEEEEECCCcEEEEeCCC--ceEEe-----ecCCCceEE
Q 004329 133 TLKRWRKGK---------LVEFWEAHNAPIQTVIRIPSG--EIVSGSSDTTIKLWKGKK--CAQTF-----VGHTDTVRG 194 (760)
Q Consensus 133 ~v~vwd~~~---------~~~~~~~~~~~v~~v~~~~~~--~l~tgs~dg~i~iwd~~~--~~~~~-----~~h~~~V~~ 194 (760)
.+++|+... ....+.+|...+.++.|.|++ .+++|+.|++|++||..+ ....+ .+|...|.+
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 999998742 345677999999999999964 399999999999999654 34444 579999999
Q ss_pred EEEeC-CC-eEEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEec-
Q 004329 195 LSVMP-GV-GIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEH- 266 (760)
Q Consensus 195 l~~~~-~~-~l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~- 266 (760)
+++++ ++ .+++|+.|++|++||++ +..+..+.+|...|++++|+|++ +|++|+.|++|++|| .+.+++.+..
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 99987 44 49999999999999974 57788899999999999999999 999999999999999 6677777652
Q ss_pred C-------CcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceee
Q 004329 267 P-------GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQ 338 (760)
Q Consensus 267 ~-------~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~ 338 (760)
. ..|++++|+|+|+ +++|+.||.|++||...++....+... ..-....+..
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---------------------~~~h~~~v~~ 349 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL---------------------QNSHEGRISC 349 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS---------------------CSSCCCCCCE
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc---------------------cCCCCCceEE
Confidence 1 2489999999999 888889999999999887765432100 0000111223
Q ss_pred ccCCCcceEEEEeeCCceEEEEEeccc
Q 004329 339 IPGTNAGQTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 339 ~~g~~~g~~~~v~~~~~~~~~~w~~~~ 365 (760)
+..+++|... +..+.++.+.+|+...
T Consensus 350 l~~s~dg~~l-~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 350 LGLSSDGSAL-CTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred EEECCCCCEE-EEeeCCCCEEEEecCC
Confidence 3345566654 4455558888888654
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=299.17 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=239.1
Q ss_pred CccccCCCce---EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 1 MMDIDFKEYQ---LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 1 I~~~d~~~~~---l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
|..||+.+.+ ....+ .|...|++++|+|++. |++|+.||.|++|++.+... .......+.+|...|.+++|+|+
T Consensus 47 v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 47 LELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-AINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-CCCEEEECCCSSSCCCEEEECSS
T ss_pred EEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-cccchhhccCCccceEEEEEcCC
Confidence 4578887664 33434 5899999999999998 99999999999999985221 12256677899999999999998
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCc------eEEE---EeCCCccEEEEEec---CCeEEEEECCCeEEEEECC--ce
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGE------KVQT---LQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG--KL 142 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~------~~~~---l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~--~~ 142 (760)
+.. ++++++.||.|++||+.+++ .... +..|...|.+++|+ +..+++++.||.|++||.. +.
T Consensus 125 ~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 125 QDN----VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp STT----BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred CCC----EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 432 59999999999999998876 3333 36799999999997 3469999999999999975 55
Q ss_pred eEEeecC------CcCeEEEEEeCCCc--EEEEECCC---cEEEEeCCC---ceEEee-cCCCceEEEEEeC-CCe-EEE
Q 004329 143 VEFWEAH------NAPIQTVIRIPSGE--IVSGSSDT---TIKLWKGKK---CAQTFV-GHTDTVRGLSVMP-GVG-IIS 205 (760)
Q Consensus 143 ~~~~~~~------~~~v~~v~~~~~~~--l~tgs~dg---~i~iwd~~~---~~~~~~-~h~~~V~~l~~~~-~~~-l~s 205 (760)
...+..| ...|.+++|+|++. +++++.|+ .|++||.+. ....+. +|...|.+++|+| ++. +++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 6666665 78999999999973 78999998 999999653 456777 8999999999999 655 999
Q ss_pred EeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEE---------------Ee
Q 004329 206 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQS---------------IE 265 (760)
Q Consensus 206 ~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~---------------~~ 265 (760)
++.||.|++||+ +++.+..+.+|...|.+++|+|++ ++++++.|+.|++|| ....... +.
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWN 360 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccc
Confidence 999999999997 577888899999999999999987 899999999999999 2111000 00
Q ss_pred ---------------------cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 266 ---------------------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 266 ---------------------~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
|..++.+++|+|+|+ +++++.||.|++|++.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 361 NVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 455778999999999 677777999999999865
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-30 Score=300.10 Aligned_cols=314 Identities=15% Similarity=0.194 Sum_probs=261.0
Q ss_pred CceEeEEec----cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCC-eEEEEEeC--CCCC
Q 004329 8 EYQLSSELR----GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSF-VGPLAWIS--PNEE 79 (760)
Q Consensus 8 ~~~l~~~l~----gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~--~~~~ 79 (760)
++++...+. .|.+.|.+++|+|+++ |++++ |+.|++|++.++.. .......+.+|... |.+++|+| ++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-~~~~~~~~~~h~~~~v~~~~~sp~~~~~- 79 (615)
T 1pgu_A 3 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-KVPPVVQFTGHGSSVVTTVKFSPIKGSQ- 79 (615)
T ss_dssp CEEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-SSCSEEEECTTTTSCEEEEEECSSTTCC-
T ss_pred ccchhhccCCCCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-ccccceEEecCCCceEEEEEECcCCCCC-
Confidence 445555444 5899999999999998 77777 89999999986611 11256778999999 99999999 887
Q ss_pred CCCcEEEEEeCCCeEEEEECCCC--------ceEEEEeCCCccEEEEEec--CCeEEEEECC----CeEEEEECCceeEE
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSG--------EKVQTLQGHKLQVTGVTLD--NEDIVSSSVD----STLKRWRKGKLVEF 145 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~--------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d----g~v~vwd~~~~~~~ 145 (760)
++++|+.||.|++||+.++ +....+..|...|.+++|+ +..+++++.+ +.|++||.++....
T Consensus 80 ----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~ 155 (615)
T 1pgu_A 80 ----YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE 155 (615)
T ss_dssp ----EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred ----EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCccee
Confidence 7999999999999999754 6777888999999999997 5569999988 79999999999999
Q ss_pred eecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCC--ceEEeecCCC---ceEEEEEeCC-Ce-EEEEeCCCeEEEEe
Q 004329 146 WEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKK--CAQTFVGHTD---TVRGLSVMPG-VG-IISASHDCTIRLWA 216 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~--~~~~~~~h~~---~V~~l~~~~~-~~-l~s~s~dg~I~iwd 216 (760)
+.+|...|.++.|+|++. +++++.|+.|++||... ....+.+|.. .|.+++|+|+ +. +++++.||.|++||
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999985 88999999999999654 5567888999 9999999998 66 89999999999999
Q ss_pred c-CCceEEEe-e---cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecC-----CcEEEEEEccCCc-EE
Q 004329 217 L-TGQVLMEM-V---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-----GCVWDAKFLENGD-IV 282 (760)
Q Consensus 217 ~-~~~~~~~~-~---~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~-----~~v~~v~~~~~g~-lv 282 (760)
+ +++.+..+ . +|...|.+++|+ ++ ++++++.|+.|++|| .++++..+... ..+.++.|. ++. ++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence 7 46777777 5 899999999999 87 999999999999999 67778877744 578888886 555 99
Q ss_pred EEEcCCcEEEEeCCCCeeechhhhhhhhhcccce----EEeccccCceeeecCC
Q 004329 283 TACSDGVTRIWTVHSDKVADSLELEAYASELSQY----KLCRKKVGGLKLEDLP 332 (760)
Q Consensus 283 t~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~i~~~~l~ 332 (760)
+++.||.|++|++.+++....+... ...+... .+.+..+|.+++|++.
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGH--NKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCC--SSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred EEECCCCEEEEECCCCcEEEEEeCC--CCCEEEEEecCcEEECCCCeEEEEEch
Confidence 9999999999999987776554321 1111110 5566778999999976
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-30 Score=286.88 Aligned_cols=268 Identities=29% Similarity=0.486 Sum_probs=226.8
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
..+|...|.|+.+ ++. +++|+.||+|++||+.+++ ....+.+|...|.+++| ++. ++++|+.||.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~-----~l~sg~~dg~ 194 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DER-----VIITGSSDST 194 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSS-----EEEEEETTSC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCC-----EEEEEcCCCe
Confidence 3467788999988 444 9999999999999998765 56778899999999998 443 6999999999
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--cee---EEeecCCcCeEEEEEeCCCcEEEEE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLV---EFWEAHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~---~~~~~~~~~v~~v~~~~~~~l~tgs 168 (760)
|++||+.+++.+..+.+|...|.+++++++.+++|+.||.|++||.. ... ..+.+|...|.++.+ ....+++|+
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~ 273 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSAS 273 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEe
Confidence 99999999999999999999999999999999999999999999975 222 667889999999999 334589999
Q ss_pred CCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEE
Q 004329 169 SDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIV 244 (760)
Q Consensus 169 ~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~ 244 (760)
.||.|++||.. +....+.+|...|.++.+. +..+++|+.||.|++||+. ++++..+.+|...|.++++ ++ +++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~ 350 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIV 350 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEE
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEE
Confidence 99999999955 4677888999999999996 5679999999999999975 7888899999999999999 44 999
Q ss_pred EEeCCCcEEEEe--CCc---------eEEEEe-cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 245 SGSEDRFAKIWK--DGV---------CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 245 s~s~Dg~I~iwd--~~~---------~~~~~~-~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
+|+.||.|++|| .+. ++..+. |.+.|++++| ++. +++++.||.|++||+.++....
T Consensus 351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 999999999999 222 566665 8889999999 555 9999999999999998766443
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-30 Score=308.30 Aligned_cols=357 Identities=19% Similarity=0.227 Sum_probs=279.8
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|..||+.+.+...++.+|.+.|++++|+|++. |++|+.||.|++||+.++. ....+.+|...|.+++|+|++.
T Consensus 37 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~- 110 (814)
T 3mkq_A 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKP- 110 (814)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSS-
T ss_pred EEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEEEEEeCCCC-
Confidence 46799999999999999999999999999998 9999999999999998765 5677889999999999999987
Q ss_pred CCCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEecC---CeEEEEECCCeEEEEECC--ceeEEeecC-CcC
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLDN---EDIVSSSVDSTLKRWRKG--KLVEFWEAH-NAP 152 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~v~vwd~~--~~~~~~~~~-~~~ 152 (760)
++++|+.||.|++||+.++ .....+.+|...|.+++|++ ..+++++.||+|++||.. .....+..+ ...
T Consensus 111 ----~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 111 ----YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp ----EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred ----EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 6999999999999999887 67788899999999999974 459999999999999974 445555544 488
Q ss_pred eEEEEEeC--CCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEe
Q 004329 153 IQTVIRIP--SGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEM 225 (760)
Q Consensus 153 v~~v~~~~--~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~ 225 (760)
+.++.|+| ++. +++++.||.|++||.. +....+.+|...|.+++|+|++. +++++.||.|++||.. ++.+..+
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 99999998 766 8899999999999954 45667888999999999999776 9999999999999975 6788888
Q ss_pred ecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeC------------CceEEE----------------------------
Q 004329 226 VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWKD------------GVCVQS---------------------------- 263 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~------------~~~~~~---------------------------- 263 (760)
..|...+.+++|+|++ .+++++.|+.+.+|+. +..+..
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 8999999999999998 3455556777888871 111110
Q ss_pred ------EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-cceEEeccccCceeeecCCC-C-
Q 004329 264 ------IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-SQYKLCRKKVGGLKLEDLPG-L- 334 (760)
Q Consensus 264 ------~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~~l~~-~- 334 (760)
..+...+.+++|+|+|++++.+.||.+.+|++........-.+....++. ....+....++.+++|+... .
T Consensus 347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~ 426 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT 426 (814)
T ss_dssp CCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT
T ss_pred eeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc
Confidence 01233678999999999555555999999998766554433333333332 23445666778899996532 1
Q ss_pred -ceeeccCCCcce--EEEEeeCCceEEEEEeccccc
Q 004329 335 -EALQIPGTNAGQ--TKVVREGDNGVAYSWDMKEQK 367 (760)
Q Consensus 335 -~~l~~~g~~~g~--~~~v~~~~~~~~~~w~~~~~~ 367 (760)
.......+.+|. ..++..+.++.+++||...+.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~ 462 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT 462 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCc
Confidence 233445666762 123333445789999987653
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-32 Score=296.04 Aligned_cols=277 Identities=15% Similarity=0.207 Sum_probs=231.7
Q ss_pred CCCCEEEEEEcCCCe--EEEE----------ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 18 HEDDVRGICVCDNVG--IATS----------SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 18 H~~~V~~v~~~~~~~--l~tg----------s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
|...|.+++|+|++. |++| +.||.|++||+.++... ... ....|...|.+++|+|++. +|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~-~~~~~~~~v~~~~~s~~~~-----~l 82 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPI-ASLQVDSKFNDLDWSHNNK-----II 82 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCS-CCCCCSSCEEEEEECSSSS-----CE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cEE-EEEecCCceEEEEECCCCC-----eE
Confidence 345788999999985 8888 89999999999865421 112 2235889999999999987 59
Q ss_pred EEEeCCCeEEEEECCC----CceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCcee--------E---Eee
Q 004329 86 VSGGMDTMVLVWDLGS----GEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGKLV--------E---FWE 147 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~----~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~~~--------~---~~~ 147 (760)
++|+.||.|++||+.+ .+.+..+.+|...|.+++|+ +..+++++.||.|++||..... . ...
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence 9999999999999987 45788899999999999997 4569999999999999985322 2 235
Q ss_pred cCCcCeEEEEEeCC-Cc-EEEEECCCcEEEEeCCC--ceEEeecC------CCceEEEEEeCCC--eEEEEeCCC---eE
Q 004329 148 AHNAPIQTVIRIPS-GE-IVSGSSDTTIKLWKGKK--CAQTFVGH------TDTVRGLSVMPGV--GIISASHDC---TI 212 (760)
Q Consensus 148 ~~~~~v~~v~~~~~-~~-l~tgs~dg~i~iwd~~~--~~~~~~~h------~~~V~~l~~~~~~--~l~s~s~dg---~I 212 (760)
.|...|.+++|+|+ +. +++++.|+.|++||... ....+..| ...|.+++|+|++ .+++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 78999999999998 44 78999999999999654 44555555 7899999999975 489999998 99
Q ss_pred EEEecCC--ceEEEee-cCCCcEEEEEEeC-CC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCC-c-EE
Q 004329 213 RLWALTG--QVLMEMV-GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENG-D-IV 282 (760)
Q Consensus 213 ~iwd~~~--~~~~~~~-~h~~~v~~v~~~p-~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g-~-lv 282 (760)
++||+.. ..+..+. +|...|.+++|+| ++ +|++++.|+.|++|| .++++..+. |...|++++|+|++ . ++
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 9999864 5667777 8999999999999 77 999999999999999 677777776 78899999999998 5 88
Q ss_pred EEEcCCcEEEEeCCCCeeec
Q 004329 283 TACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 283 t~~~dg~I~vw~~~~~~~~~ 302 (760)
+++.||.|++|++.+.....
T Consensus 323 s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp ECCSSSEEEEEESCCCCCSS
T ss_pred EEecCCcEEEEEccCCCCCc
Confidence 88999999999999877544
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=303.37 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=218.6
Q ss_pred ccccCCCceE----eEEeccCCCCEEEEEEcCC------Ce-EEEEECCCeEEEEeCCCCCCc------cceeeeEeeCC
Q 004329 2 MDIDFKEYQL----SSELRGHEDDVRGICVCDN------VG-IATSSRDRTVRFWSLDPSDKR------KYHSSKILLGH 64 (760)
Q Consensus 2 ~~~d~~~~~l----~~~l~gH~~~V~~v~~~~~------~~-l~tgs~Dg~i~iWd~~~~~~~------~~~~~~~~~~h 64 (760)
..||+.+.++ ..++.+|.+.|++++|+|+ +. |++|+.||+|++||+.++... ...+...+.+|
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h 265 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC
Confidence 4677755543 3457789999999999986 34 999999999999999865421 01123467889
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEE--Eec--C-CeEEEEECCCeEEEEE
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGV--TLD--N-EDIVSSSVDSTLKRWR 138 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l--~~~--~-~~l~sgs~dg~v~vwd 138 (760)
...|.+++|++++ .|++|+.||+|++||++++ .+...+.+|...|.++ .++ + ..|++|+.|++|++||
T Consensus 266 ~~~v~sv~~s~~~------~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 266 DSLITTFDFLSPT------TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp TTCEEEEEESSSS------EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred CCCEEEEEecCCC------eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 9999999999754 5999999999999999876 4556788999999999 455 3 4699999999999999
Q ss_pred CC--ceeEEeecCCc--CeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEeCCC
Q 004329 139 KG--KLVEFWEAHNA--PIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISASHDC 210 (760)
Q Consensus 139 ~~--~~~~~~~~~~~--~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg 210 (760)
.. ++...+.+|.. .|.+++|+|++. +++++.|++|++||.+. +...+.+|.+.|.+++|+|++. +++|+.||
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 85 44445556643 588999999876 78899999999999654 5578889999999999999776 99999999
Q ss_pred eEEEEecCCceEEEeec-----CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEe-cCCcEEEEEEccCCc---
Q 004329 211 TIRLWALTGQVLMEMVG-----HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD--- 280 (760)
Q Consensus 211 ~I~iwd~~~~~~~~~~~-----h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~--- 280 (760)
+|++||...+.+..... +...+++++|+|++.++....+..+..|+ .+.++..+. |...|++|+|+|++.
T Consensus 420 tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 420 SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGK 499 (524)
T ss_dssp EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTT
T ss_pred EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccH
Confidence 99999986654332211 12257899999998433333333344444 466666665 888999999999963
Q ss_pred -EEEEEcCCcEEEEeCCCCe
Q 004329 281 -IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 281 -lvt~~~dg~I~vw~~~~~~ 299 (760)
+++|+.||.||||++.-..
T Consensus 500 ~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp EEEEECTTSEEEEEECSCC-
T ss_pred HHHhhccCceEEEEEccccc
Confidence 6777778999999987553
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-31 Score=288.89 Aligned_cols=286 Identities=15% Similarity=0.205 Sum_probs=232.9
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
|+.||..+.+....+.+| ..+....|++++. |++|+.||.|++||+.++. ....+.+|...|.+++|+|++.
T Consensus 80 v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~- 152 (420)
T 3vl1_A 80 DFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITKLKFFPSGE- 152 (420)
T ss_dssp EEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEEEEECTTSS-
T ss_pred EEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEEEEECCCCC-
Confidence 357888887777777777 4455557888888 9999999999999998554 4556679999999999999987
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeec---CCcC
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEA---HNAP 152 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~---~~~~ 152 (760)
++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||+|++||.. +....+.. |...
T Consensus 153 ----~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 153 ----ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp ----EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred ----EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence 69999999999999999999999999999999999997 5679999999999999975 55556654 4445
Q ss_pred eEEEEE---------------------eCCCc-EEEEECCCcEEEEeCCCc--eEEe-ecCCCceEEEEEeCCC--eEEE
Q 004329 153 IQTVIR---------------------IPSGE-IVSGSSDTTIKLWKGKKC--AQTF-VGHTDTVRGLSVMPGV--GIIS 205 (760)
Q Consensus 153 v~~v~~---------------------~~~~~-l~tgs~dg~i~iwd~~~~--~~~~-~~h~~~V~~l~~~~~~--~l~s 205 (760)
+.++.+ +|++. +++|+.||.|++||.+.. ...+ ..|...|.+++|+|++ .+++
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 555554 57776 789999999999996643 3333 4588999999999966 4999
Q ss_pred EeCCCeEEEEecCC--ceEEEeec-CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--C----------CceEEEEecCCcE
Q 004329 206 ASHDCTIRLWALTG--QVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--D----------GVCVQSIEHPGCV 270 (760)
Q Consensus 206 ~s~dg~I~iwd~~~--~~~~~~~~-h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~----------~~~~~~~~~~~~v 270 (760)
++.||.|++||+.. ..+..+.+ |...|.++.+.++.+|++++.|+.|++|+ . ........|.+.|
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v 388 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV 388 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce
Confidence 99999999999853 34666766 67788888665433999999999999999 2 1223334577899
Q ss_pred EEEEEccCCc----EEEEEcCCcEEEEeCCC
Q 004329 271 WDAKFLENGD----IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 271 ~~v~~~~~g~----lvt~~~dg~I~vw~~~~ 297 (760)
.+++|+|++. +++++.+|.+.+|+++.
T Consensus 389 ~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 389 SQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999988 99999999999999864
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=313.03 Aligned_cols=296 Identities=11% Similarity=0.068 Sum_probs=219.8
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCcccee-----e-eEeeCCCCCeEEEEE
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHS-----S-KILLGHTSFVGPLAW 73 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~-----~-~~~~~h~~~V~~l~~ 73 (760)
|..||+.+.++..++. |.+.|++++|+|++. |++|+.||+|++||+.++....+.. . ..+.+|.+.|.+++|
T Consensus 81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp EEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 4679999999988886 778999999999999 9999999999999998654211100 0 234679999999999
Q ss_pred eCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC------------------CccEEEEEec--CCeEEEEECCCe
Q 004329 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH------------------KLQVTGVTLD--NEDIVSSSVDST 133 (760)
Q Consensus 74 ~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h------------------~~~V~~l~~~--~~~l~sgs~dg~ 133 (760)
+|++.. .+++|+.||.| +||+++++++..+..| ...|.+++|+ +..|++|+.||+
T Consensus 160 sp~~~~----~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 160 NPRDIG----TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp ETTEEE----EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred ccCCCC----EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 997532 59999999999 9999999998888766 5779999997 567999999999
Q ss_pred EEEEECC--ceeEE--e---ec-------------CCcCeEEEEEeC----CC-c-EEEEECC-----------------
Q 004329 134 LKRWRKG--KLVEF--W---EA-------------HNAPIQTVIRIP----SG-E-IVSGSSD----------------- 170 (760)
Q Consensus 134 v~vwd~~--~~~~~--~---~~-------------~~~~v~~v~~~~----~~-~-l~tgs~d----------------- 170 (760)
|++||.. +++.. + .. |..+|.+++|++ ++ . +++|+.|
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 9999975 33332 1 11 244688888853 32 2 4455443
Q ss_pred -----------------------------------------------------------CcEEEEeCCCceE--------
Q 004329 171 -----------------------------------------------------------TTIKLWKGKKCAQ-------- 183 (760)
Q Consensus 171 -----------------------------------------------------------g~i~iwd~~~~~~-------- 183 (760)
|.|++||......
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~ 394 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP 394 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence 3344444211100
Q ss_pred -EeecCCCceEEE----------------------------------EEeCCCe-EEEEeCCCeEEEEecCCceE-----
Q 004329 184 -TFVGHTDTVRGL----------------------------------SVMPGVG-IISASHDCTIRLWALTGQVL----- 222 (760)
Q Consensus 184 -~~~~h~~~V~~l----------------------------------~~~~~~~-l~s~s~dg~I~iwd~~~~~~----- 222 (760)
.+..|...|+++ +|+|++. +++|+.|++|++||+....+
T Consensus 395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 011122334444 4456555 99999999999999754322
Q ss_pred EE--ee-----cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CC----------------------------------
Q 004329 223 ME--MV-----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG---------------------------------- 258 (760)
Q Consensus 223 ~~--~~-----~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~---------------------------------- 258 (760)
.. +. +|...|++++|+|++ +||+|+.||+|++|| .+
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 11 11 789999999999999 999999999999999 32
Q ss_pred -----------ceEEEEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 259 -----------VCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 259 -----------~~~~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
.++..+. |.+.|++++|+|||.+++|+.||+|++||+++...+.
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEE
Confidence 1345555 8899999999999977888899999999998887654
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-31 Score=281.41 Aligned_cols=236 Identities=24% Similarity=0.344 Sum_probs=186.1
Q ss_pred EEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC--CCCCCCcEEEEEe
Q 004329 13 SELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP--NEEFPEGGLVSGG 89 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~~~~~l~sgs 89 (760)
..+.+|.+.|++++|+|++. |+||+.|++|++||+.++. ......+.+|...|.+++|+++ +. +|++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~~-----~l~s~s 78 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG---QILIADLRGHEGPVWQVAWAHPMYGN-----ILASCS 78 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE---EEEEEEEECCSSCEEEEEECCGGGSS-----CEEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC---cEEEEEEcCCCccEEEEEeCCCCCCC-----EEEEEE
Confidence 35679999999999999998 9999999999999997543 2345678899999999999864 33 599999
Q ss_pred CCCeEEEEECCCC--ceEEEEeCCCccEEEEEecC----CeEEEEECCCeEEEEECCce-----eEEeecCCcCeEEEEE
Q 004329 90 MDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLDN----EDIVSSSVDSTLKRWRKGKL-----VEFWEAHNAPIQTVIR 158 (760)
Q Consensus 90 ~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~v~vwd~~~~-----~~~~~~~~~~v~~v~~ 158 (760)
.|++|++||++++ +....+.+|...|.+++|++ ..+++|+.||+|++||.... ...+..|...|.++.|
T Consensus 79 ~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 9999999999887 45677889999999999973 35999999999999987532 3445678899999999
Q ss_pred eCCC------------------cEEEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEeCCC-----eEEEEeCCC
Q 004329 159 IPSG------------------EIVSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVMPGV-----GIISASHDC 210 (760)
Q Consensus 159 ~~~~------------------~l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg 210 (760)
+|+. .+++|+.|++|++||... ....+.+|...|++++|+|++ .+++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 9872 478888888888888542 345677888888888888853 488888888
Q ss_pred eEEEEecCC----c-eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 211 TIRLWALTG----Q-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 211 ~I~iwd~~~----~-~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+|++|++.. . ....+..|...|++++|+|++ +|++++.|++|++|+
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 888888643 1 223445678888888888888 888888888888887
No 74
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=7.3e-30 Score=278.32 Aligned_cols=244 Identities=30% Similarity=0.511 Sum_probs=210.5
Q ss_pred ccccCCCceEeEEeccCCC------------------CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee
Q 004329 2 MDIDFKEYQLSSELRGHED------------------DVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL 62 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~------------------~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~ 62 (760)
..|++.+.++...+.+|.. .|++++|+|+++ |++|+.||+|++||+.+++ ....+.
T Consensus 88 ~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----~~~~~~ 162 (393)
T 1erj_A 88 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMILQ 162 (393)
T ss_dssp EEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEEC
T ss_pred EEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEc
Confidence 4688888888888887653 399999999998 9999999999999998654 567788
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEEC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~ 139 (760)
+|...|.+++|+|++. ++++|+.|++|++||+.++++...+. +...+.+++++ +..+++|+.||.|++||.
T Consensus 163 ~h~~~v~~~~~~p~~~-----~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 163 GHEQDIYSLDYFPSGD-----KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp CCSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEEcCCCC-----EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 9999999999999987 69999999999999999998887776 56778899886 456999999999999997
Q ss_pred C--ceeEEe-------ecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--------------ceEEeecCCCceEEE
Q 004329 140 G--KLVEFW-------EAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--------------CAQTFVGHTDTVRGL 195 (760)
Q Consensus 140 ~--~~~~~~-------~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--------------~~~~~~~h~~~V~~l 195 (760)
. .....+ .+|...|.+++|+|++. +++|+.|+.|++||... +...+.+|...|.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 316 (393)
T 1erj_A 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316 (393)
T ss_dssp TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence 5 344444 57899999999999987 88999999999999643 345678899999999
Q ss_pred EEeCCCe-EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeC------CC-eEEEEeCCCcEEEEe
Q 004329 196 SVMPGVG-IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA------SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 196 ~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p------~~-~l~s~s~Dg~I~iwd 256 (760)
+++|++. +++++.|+.|++||. +++.+..+.+|...|.++++++ ++ .|++|+.||+|++|+
T Consensus 317 ~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 317 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 9999665 999999999999996 5778888999999999999986 56 899999999999998
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=5.9e-30 Score=267.74 Aligned_cols=234 Identities=18% Similarity=0.324 Sum_probs=200.2
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC--CceEEEEeCCCccEEEEEec----CCeEEEEECCC
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS--GEKVQTLQGHKLQVTGVTLD----NEDIVSSSVDS 132 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~--~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg 132 (760)
..+.+|...|.+++|+|++. +|++|+.|++|++||+.+ .+++..+.+|...|.+++|+ +..|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-----~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-----RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-----EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCC-----EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 45678999999999999988 699999999999999974 36788999999999999995 45799999999
Q ss_pred eEEEEECC----ceeEEeecCCcCeEEEEEeCC--Cc-EEEEECCCcEEEEeCCCc----eEEeecCCCceEEEEEeCC-
Q 004329 133 TLKRWRKG----KLVEFWEAHNAPIQTVIRIPS--GE-IVSGSSDTTIKLWKGKKC----AQTFVGHTDTVRGLSVMPG- 200 (760)
Q Consensus 133 ~v~vwd~~----~~~~~~~~~~~~v~~v~~~~~--~~-l~tgs~dg~i~iwd~~~~----~~~~~~h~~~V~~l~~~~~- 200 (760)
+|++||.. .....+..|...|.+++|+|+ +. +++|+.|+.|++||.+.. ...+.+|...|.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 99999975 245677889999999999997 54 889999999999996542 4567889999999999995
Q ss_pred -------------CeEEEEeCCCeEEEEecCC-c----eEEEeecCCCcEEEEEEeCC---C-eEEEEeCCCcEEEEe--
Q 004329 201 -------------VGIISASHDCTIRLWALTG-Q----VLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 201 -------------~~l~s~s~dg~I~iwd~~~-~----~~~~~~~h~~~v~~v~~~p~---~-~l~s~s~Dg~I~iwd-- 256 (760)
..+++|+.|++|++||++. . ....+.+|...|.+++|+|+ + +|++++.|++|++||
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 3599999999999999743 3 55678899999999999998 4 899999999999999
Q ss_pred CCc---eEEEE---ecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 257 DGV---CVQSI---EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 257 ~~~---~~~~~---~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
... ....+ .|+..|++++|+|+|+ +++++.||.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 211 22233 3677999999999999 89999999999999763
No 76
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=4.3e-30 Score=282.20 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=216.0
Q ss_pred EEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 22 VRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 22 V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
+++++|+|++. |++|+.||.|++||+.++. ....+..| ..+....|++++. ++++|+.||.|++||+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD-----GSKMLKRA-DYTAVDTAKLQMR-----RFILGTTEGDIKVLDSN 127 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEE-----TTTTSCSC-CEEEEEEECSSSC-----EEEEEETTSCEEEECTT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccc-----eeeEEecC-CceEEEEEecCCC-----EEEEEECCCCEEEEeCC
Confidence 44789999998 9999999999999998554 22233344 4455556777776 69999999999999999
Q ss_pred CCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEE
Q 004329 101 SGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKL 175 (760)
Q Consensus 101 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~i 175 (760)
+++....+.+|...|.+++|+ +..+++|+.||+|++||.. +....+.+|...|.+++|+|++. +++++.|+.|++
T Consensus 128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 999988888999999999997 5579999999999999974 67788899999999999999987 889999999999
Q ss_pred EeCCC--ceEEeec---CCCceEEEEE---------------------eCCCe-EEEEeCCCeEEEEecC-CceEEEee-
Q 004329 176 WKGKK--CAQTFVG---HTDTVRGLSV---------------------MPGVG-IISASHDCTIRLWALT-GQVLMEMV- 226 (760)
Q Consensus 176 wd~~~--~~~~~~~---h~~~V~~l~~---------------------~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~- 226 (760)
||.+. ....+.. |...|.++++ +|++. +++++.||.|++||+. ++.+..+.
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 99654 4445553 4455555555 56665 9999999999999974 45555554
Q ss_pred cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CC-ceEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 227 GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DG-VCVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~-~~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
+|...|.+++|+|++ ++++|+.||.|++|| .+ .++..+. |...|+++.+ +++. +++++.||.|++|++...
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 588999999999998 899999999999999 33 3345554 5668888866 4666 899999999999999874
Q ss_pred e
Q 004329 299 K 299 (760)
Q Consensus 299 ~ 299 (760)
.
T Consensus 367 ~ 367 (420)
T 3vl1_A 367 E 367 (420)
T ss_dssp T
T ss_pred C
Confidence 3
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.5e-29 Score=295.06 Aligned_cols=297 Identities=25% Similarity=0.371 Sum_probs=232.9
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC-----ceEEEEeCCCccEEEEEec--CCeEEEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG-----EKVQTLQGHKLQVTGVTLD--NEDIVSSS 129 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~l~~~--~~~l~sgs 129 (760)
....+.+|.+.|++++|++++.. +|++|+.|++|++|++.+. .....+.+|...|.+++|+ ++.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~----~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNAD----IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCS----EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCC----EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 34568899999999999988653 6999999999999999753 3567789999999999997 56799999
Q ss_pred CCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCc-eEEe----ecCCCceEEEEEeCCC
Q 004329 130 VDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKC-AQTF----VGHTDTVRGLSVMPGV 201 (760)
Q Consensus 130 ~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~-~~~~----~~h~~~V~~l~~~~~~ 201 (760)
.||+|++||.. .....+.+|...|.+++|+|++. +++|+.|++|++||.... ...+ .+|...|.+++|+|++
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 99999999975 56778899999999999999987 899999999999996543 2222 3688999999999964
Q ss_pred ---eEEEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEE
Q 004329 202 ---GIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 274 (760)
Q Consensus 202 ---~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~ 274 (760)
.+++++.|++|++||+. ++....+.+|...|++++|+|++ ++++|+.||+|++|| .++++..+.+...|.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence 49999999999999985 56777888999999999999999 999999999999999 677777777888999999
Q ss_pred EccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCC
Q 004329 275 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 354 (760)
Q Consensus 275 ~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~ 354 (760)
|+|++.+++++.|+.|++||+.+++.+..+.......... ....+.. ........+..+.++++|...+..+.
T Consensus 610 ~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~l~~spdg~~l~sgs~- 682 (694)
T 3dm0_A 610 FSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK-----ADNSGPA-ATKRKVIYCTSLNWSADGSTLFSGYT- 682 (694)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------------CCCCEEEEEECTTSSEEEEEET-
T ss_pred EcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc-----ccccccc-cCCceeEEeeeEEEcCCCCEEEEEcC-
Confidence 9999998888888999999999998876554221100000 0000000 00000001233456778876655544
Q ss_pred ceEEEEEecc
Q 004329 355 NGVAYSWDMK 364 (760)
Q Consensus 355 ~~~~~~w~~~ 364 (760)
++.+++|+..
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 5889999964
No 78
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.4e-29 Score=269.56 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=229.0
Q ss_pred EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 11 LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
......+|.+.|++++|+|++. |++++.||.|++|++.++.. ........+|...|.+++|+|++.. ++++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~ 76 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--NVDLLQSLRYKHPLLCCNFIDNTDL----QIYVGT 76 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--EEEEEEEEECSSCEEEEEEEESSSE----EEEEEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--cccceeeeecCCceEEEEECCCCCc----EEEEEc
Confidence 4445569999999999999988 99999999999999985541 2234455689999999999998651 389999
Q ss_pred CCCeEEEEEC-CCCceEEEEeC--CCccEEEEEec-CCeEEEEECCCeEEEEECCc-----------eeEEeecCCcCeE
Q 004329 90 MDTMVLVWDL-GSGEKVQTLQG--HKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-----------LVEFWEAHNAPIQ 154 (760)
Q Consensus 90 ~dg~I~vwd~-~~~~~~~~l~~--h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-----------~~~~~~~~~~~v~ 154 (760)
.||.|++||+ .+++. ..+.+ |...|.+++|+ ++.+++++.|+.|++||... ++..+. |...|.
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEE
T ss_pred CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceE
Confidence 9999999999 77755 67788 99999999998 67899999999999998643 233344 888999
Q ss_pred EEEEeCCCcEEEEECCCcEEEEeCCC-----ceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEecCC-------c
Q 004329 155 TVIRIPSGEIVSGSSDTTIKLWKGKK-----CAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWALTG-------Q 220 (760)
Q Consensus 155 ~v~~~~~~~l~tgs~dg~i~iwd~~~-----~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~~~-------~ 220 (760)
++.+++++ +++++.|+.|++||.+. .......|...|++++|+| ++. +++++.||.|++|+++. .
T Consensus 155 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 155 TMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 99999988 99999999999999765 2334556889999999999 665 99999999999999742 6
Q ss_pred eEEEeecCCC---------cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-c-CCcEEEEEEccCCc-EEEEE
Q 004329 221 VLMEMVGHTA---------IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H-PGCVWDAKFLENGD-IVTAC 285 (760)
Q Consensus 221 ~~~~~~~h~~---------~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~-~~~v~~v~~~~~g~-lvt~~ 285 (760)
....+..|.. .|.+++|+|++ +|++++.||.|++|| .++++..+. | ...|++++ |+|. +++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 6777887765 99999999999 999999999999999 677777776 5 78999999 9988 89999
Q ss_pred cCCc-EEEEe
Q 004329 286 SDGV-TRIWT 294 (760)
Q Consensus 286 ~dg~-I~vw~ 294 (760)
.||. .+.|.
T Consensus 312 ~Dg~~~~~~~ 321 (342)
T 1yfq_A 312 SDDTFKTNAA 321 (342)
T ss_dssp ECTHHHHCSS
T ss_pred cCCccccccc
Confidence 9998 55544
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=271.17 Aligned_cols=283 Identities=15% Similarity=0.175 Sum_probs=230.4
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCC---Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDN---VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~---~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
.++..+++....+.+|.+.|++++|+|+ +. |++|+.||.|++||+.+.. ......+.+|...|.+++|+|++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---QTIPKAQQMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---CEEEEEEEECSSCEEEEEECTTSS
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---ceeEEEeccccCCEEEEEECcCCC
Confidence 3566778888999999999999999999 46 9999999999999998633 223467788999999999999887
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe--c--CCeEEEEECCCeEEEEECC--ceeEEeecCCcC
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--D--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAP 152 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~--~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~ 152 (760)
+|++|+.||.|++||+.+++... +..|...|.+++| + +..+++++.||.|++||.. +.+..+..+. .
T Consensus 100 -----~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 100 -----KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R 172 (368)
T ss_dssp -----EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C
T ss_pred -----EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C
Confidence 69999999999999999888766 5569999999999 5 3459999999999999874 6666676664 5
Q ss_pred eEEEEEeCCCcEEEEECCCcEEEEeCCCceEEee----cCCCceEEEEEeCCCe-----EEEEeCCCeEEEEecCC----
Q 004329 153 IQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFV----GHTDTVRGLSVMPGVG-----IISASHDCTIRLWALTG---- 219 (760)
Q Consensus 153 v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~----~h~~~V~~l~~~~~~~-----l~s~s~dg~I~iwd~~~---- 219 (760)
+.++.+.+ ..+++++.++.+++|+.......+. .+...+.++++.++.. +++++.||.|++||+..
T Consensus 173 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 173 CYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred ceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 66666664 3578899999999999765433222 2445566666655221 99999999999999864
Q ss_pred ceEEEeecCCC------------cEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCc-EE
Q 004329 220 QVLMEMVGHTA------------IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IV 282 (760)
Q Consensus 220 ~~~~~~~~h~~------------~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lv 282 (760)
.....+.+|.. .|.+++|+|++ +|++++.||.|++|| .+.++..+. |...|++++|+|+|. ++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 45667777776 79999999999 999999999999999 667777776 788999999999999 89
Q ss_pred EEEcCCcEEEEeCC
Q 004329 283 TACSDGVTRIWTVH 296 (760)
Q Consensus 283 t~~~dg~I~vw~~~ 296 (760)
+++.|+..+.|++.
T Consensus 332 ~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 332 YASSYDWSKGHEFY 345 (368)
T ss_dssp EEECCCSTTCGGGC
T ss_pred EEeccccccccccc
Confidence 99998866555543
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-29 Score=260.24 Aligned_cols=281 Identities=22% Similarity=0.343 Sum_probs=236.4
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS 132 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg 132 (760)
+.....+.+|.+.|.+++| +++. ++++|+.||.|++||+.+++....+..|...|.+++|+ +..+++++.||
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-----KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-----EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-----EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 4567788999999999999 7776 69999999999999999999999999999999999997 66799999999
Q ss_pred eEEEEECC-----ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeC--CCeEEE
Q 004329 133 TLKRWRKG-----KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMP--GVGIIS 205 (760)
Q Consensus 133 ~v~vwd~~-----~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~--~~~l~s 205 (760)
.+++|+.. +....+..|...|.++.+. .+.+++++.||.|++||..+....+..|...+.++++.| +..+++
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 99999864 4567788999999999993 455899999999999998888889999999999999988 445999
Q ss_pred EeCCCeEEEEecCCceEEEeec-CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccCCcE
Q 004329 206 ASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGDI 281 (760)
Q Consensus 206 ~s~dg~I~iwd~~~~~~~~~~~-h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~l 281 (760)
++.||.|++|| .+.....+.. |...+.+++++|++.+++++.||.|++|| .++++..+. |.+.|++++|+|++.+
T Consensus 161 ~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l 239 (313)
T 3odt_A 161 ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI 239 (313)
T ss_dssp EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCE
T ss_pred EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCE
Confidence 99999999999 5566666766 99999999999999999999999999999 677777776 8889999999999999
Q ss_pred EEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEE
Q 004329 282 VTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSW 361 (760)
Q Consensus 282 vt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w 361 (760)
++++.||.|++||+.+++....+.. +......+..+++|. . +..+.++.+++|
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~-~-~~~~~dg~i~iw 292 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVITL-------------------------PAISIWSVDCMSNGD-I-IVGSSDNLVRIF 292 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEEC-------------------------SSSCEEEEEECTTSC-E-EEEETTSCEEEE
T ss_pred EEEecCCEEEEEECCCCceeEEEec-------------------------cCceEEEEEEccCCC-E-EEEeCCCcEEEE
Confidence 9999999999999998876543321 111233344455665 3 335556889999
Q ss_pred eccccceee
Q 004329 362 DMKEQKWDK 370 (760)
Q Consensus 362 ~~~~~~W~~ 370 (760)
+...++|..
T Consensus 293 ~~~~~~~~~ 301 (313)
T 3odt_A 293 SQEKSRWAS 301 (313)
T ss_dssp ESCGGGCCC
T ss_pred eCCCCceee
Confidence 988776654
No 81
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.3e-28 Score=257.24 Aligned_cols=280 Identities=25% Similarity=0.431 Sum_probs=226.5
Q ss_pred cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC
Q 004329 54 KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD 131 (760)
Q Consensus 54 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d 131 (760)
.+.....+.+|...|++++|+|++. ++++|+.||.|++|+..+++....+.+|...|.+++|+ ++.+++++.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~-----~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGE-----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceeEEEEcccCCcEEEEEECCCCC-----EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 3456677889999999999999987 69999999999999999999999999999999999997 5679999999
Q ss_pred CeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCe-EEE
Q 004329 132 STLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVG-IIS 205 (760)
Q Consensus 132 g~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~-l~s 205 (760)
|.|++||.. +.+..+.+|...|.++.|+|++. +++|+.|+.|++||.+ +....+..|..+|.+++|+|++. +++
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 999999975 67788899999999999999987 7899999999999965 45677888999999999999766 999
Q ss_pred EeCCCeEEEEecC-CceEEEee-cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcE--EEEEEc-
Q 004329 206 ASHDCTIRLWALT-GQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV--WDAKFL- 276 (760)
Q Consensus 206 ~s~dg~I~iwd~~-~~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v--~~v~~~- 276 (760)
++.||.|++||+. ++.+..+. .+...+.+++|+|++ ++++++.|+.|++|| .+.++..+. |...+ ....++
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9999999999975 55555554 567789999999999 999999999999999 666777665 44322 223343
Q ss_pred cCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEee-CC
Q 004329 277 ENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE-GD 354 (760)
Q Consensus 277 ~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~-~~ 354 (760)
+++. +++|+.||.|++||+.+++.+..+.. ....+..+..++++...+..+ ++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~~~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-------------------------HTDVVISTACHPTENIIASAALEN 301 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECC-------------------------CSSCEEEEEECSSSSEEEEEECTT
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhc-------------------------cCCcEEEEeecCcCCceEEEEccC
Confidence 5666 88899999999999998876543321 111223344555666555554 34
Q ss_pred ceEEEEEec
Q 004329 355 NGVAYSWDM 363 (760)
Q Consensus 355 ~~~~~~w~~ 363 (760)
++.+.+|+.
T Consensus 302 d~~i~~W~~ 310 (312)
T 4ery_A 302 DKTIKLWKS 310 (312)
T ss_dssp TCCEEEEEC
T ss_pred CccEEEecC
Confidence 577888874
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=280.93 Aligned_cols=274 Identities=13% Similarity=0.262 Sum_probs=215.8
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC------ccceeeeEeeCCC------------CCeEEEEEeCCCC
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK------RKYHSSKILLGHT------------SFVGPLAWISPNE 78 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~------~~~~~~~~~~~h~------------~~V~~l~~~~~~~ 78 (760)
|.+.|++++|+|++. |++|+.||.|+||++.++.. ..+.....+.+|. ..|.+++|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 689999999999998 99999999999999986541 2334567788998 8899999999973
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EeCCCccEEEE
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKV---------------------------------------QT-LQGHKLQVTGV 118 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~---------------------------------------~~-l~~h~~~V~~l 118 (760)
. ..+++++.||.|++||+.+++.. .. ..+|...|.++
T Consensus 107 ~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 107 A---AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp S---SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred c---ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 1 16999999999999998764432 12 36899999999
Q ss_pred Eec--CCeEEEEECCCeEEEEECCcee---E-------EeecCCcCeEEEEEeCCC-c-EEEEECCCcEEEEeCCC--c-
Q 004329 119 TLD--NEDIVSSSVDSTLKRWRKGKLV---E-------FWEAHNAPIQTVIRIPSG-E-IVSGSSDTTIKLWKGKK--C- 181 (760)
Q Consensus 119 ~~~--~~~l~sgs~dg~v~vwd~~~~~---~-------~~~~~~~~v~~v~~~~~~-~-l~tgs~dg~i~iwd~~~--~- 181 (760)
+|+ +..+++| .||.|++||..... . .+..|...|.+++|+|++ . +++|+.||.|++||.+. .
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 997 5568887 89999999987322 2 145789999999999997 5 88999999999999654 2
Q ss_pred ---eEEeecCCC------------ceEEEEEeCCCe-EEEEeCCCeEEEEecC--CceEEEeecCCCc------------
Q 004329 182 ---AQTFVGHTD------------TVRGLSVMPGVG-IISASHDCTIRLWALT--GQVLMEMVGHTAI------------ 231 (760)
Q Consensus 182 ---~~~~~~h~~------------~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~------------ 231 (760)
...+..|.. .|.+++|+|++. +++++. +.|++||+. ++++..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 467778876 899999999877 777777 999999974 6777788887532
Q ss_pred ---EEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEE---------------------------------ecCCcEEE
Q 004329 232 ---VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI---------------------------------EHPGCVWD 272 (760)
Q Consensus 232 ---v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~---------------------------------~~~~~v~~ 272 (760)
+..++|+|++ +|++|+.||.|++|| .++.+... .+...|..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 3359999999 999999999999999 44444322 23347899
Q ss_pred EEEccCCcEEEEEcCCcEEEEeCC
Q 004329 273 AKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 273 v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
++|+|++.+++.+..+.+++|..+
T Consensus 422 ~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EEECSSSSEEEEECSSCEEEEECC
T ss_pred EEECCCCCEEEEEecceeeeeccc
Confidence 999999995555555568888743
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=292.42 Aligned_cols=266 Identities=12% Similarity=0.097 Sum_probs=204.9
Q ss_pred CCCCEEEEEEcCCC---------e-EEE-------------------EECCCeEEEEeCCCCCCccceeeeEeeCCCCCe
Q 004329 18 HEDDVRGICVCDNV---------G-IAT-------------------SSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFV 68 (760)
Q Consensus 18 H~~~V~~v~~~~~~---------~-l~t-------------------gs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V 68 (760)
+.+.|.+|+|+|++ + ||+ ++.|++|+||++.+++. .......+.+|.+.|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~-~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL-HCVKVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-CEEEEEEEEECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-CceEEEEEEecCCcE
Confidence 57788888888775 4 444 56889999999976542 122234466788999
Q ss_pred EEEEEeCCCCCCC-CcEEEEEeCCCeEEEEECCCCce-----------EEEEeCCCccEEEEEec-CCeEEEEECCCeEE
Q 004329 69 GPLAWISPNEEFP-EGGLVSGGMDTMVLVWDLGSGEK-----------VQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLK 135 (760)
Q Consensus 69 ~~l~~~~~~~~~~-~~~l~sgs~dg~I~vwd~~~~~~-----------~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~ 135 (760)
.+++|+|++...+ .++|++|+.||+|++||+.++.. ...+.+|...|++++|+ ++.|++|+.||+|+
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~ 290 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVA 290 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEE
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEE
Confidence 9999999732111 23799999999999999986632 34678999999999997 66899999999999
Q ss_pred EEECC---ceeEEeecCCcCeEEE--EEeCCC-c-EEEEECCCcEEEEeCCC--ceEEeecCCC--ceEEEEEeCCCe-E
Q 004329 136 RWRKG---KLVEFWEAHNAPIQTV--IRIPSG-E-IVSGSSDTTIKLWKGKK--CAQTFVGHTD--TVRGLSVMPGVG-I 203 (760)
Q Consensus 136 vwd~~---~~~~~~~~~~~~v~~v--~~~~~~-~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~--~V~~l~~~~~~~-l 203 (760)
+||.. .+...+.+|...|.++ .+++++ . +++|+.|++|++||.+. +...+.+|.. .|.+++|+|++. +
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 99985 3456688999999999 567776 5 78999999999999764 4446666653 588999999665 8
Q ss_pred EEEeCCCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEE------ecCCcEEEEE
Q 004329 204 ISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSI------EHPGCVWDAK 274 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~------~~~~~v~~v~ 274 (760)
++++.|++|++||++ +.++..+.+|...|++++|+|++ .|++|+.||+|++|| ....+... .+...+++++
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~ 450 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD 450 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECB
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEec
Confidence 999999999999974 56678888999999999999999 999999999999999 22222211 1222688999
Q ss_pred EccCCcEEEE
Q 004329 275 FLENGDIVTA 284 (760)
Q Consensus 275 ~~~~g~lvt~ 284 (760)
|+|+|..+..
T Consensus 451 ~sp~g~~~~~ 460 (524)
T 2j04_B 451 YSIKDDKYRI 460 (524)
T ss_dssp CCSSSCEEEE
T ss_pred cCCCCCeEEc
Confidence 9999985543
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=5.4e-30 Score=270.55 Aligned_cols=233 Identities=21% Similarity=0.270 Sum_probs=193.7
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec----CCeEEEEECCC
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD----NEDIVSSSVDS 132 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg 132 (760)
..+.+|.+.|++++|+|++. +|++|+.|++|++||+.+++ .+..+.+|...|.+++|+ ++.|++|+.|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-----~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-----RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp -------CCEEEEEECGGGC-----EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred eecccccCeEEEeeEcCCCC-----EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 34578999999999999987 79999999999999998774 467889999999999995 46799999999
Q ss_pred eEEEEECCc----eeEEeecCCcCeEEEEEeCC--Cc-EEEEECCCcEEEEeCCCc-----eEEeecCCCceEEEEEeCC
Q 004329 133 TLKRWRKGK----LVEFWEAHNAPIQTVIRIPS--GE-IVSGSSDTTIKLWKGKKC-----AQTFVGHTDTVRGLSVMPG 200 (760)
Q Consensus 133 ~v~vwd~~~----~~~~~~~~~~~v~~v~~~~~--~~-l~tgs~dg~i~iwd~~~~-----~~~~~~h~~~V~~l~~~~~ 200 (760)
+|++||... ....+.+|...|.+++|+|+ +. +++|+.|+.|++||.... ...+.+|...|.+++|+|+
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 999999752 45667889999999999997 54 889999999999996542 2345679999999999986
Q ss_pred ------------------CeEEEEeCCCeEEEEecCC----ceEEEeecCCCcEEEEEEeCCC-----eEEEEeCCCcEE
Q 004329 201 ------------------VGIISASHDCTIRLWALTG----QVLMEMVGHTAIVYSIDSHASG-----LIVSGSEDRFAK 253 (760)
Q Consensus 201 ------------------~~l~s~s~dg~I~iwd~~~----~~~~~~~~h~~~v~~v~~~p~~-----~l~s~s~Dg~I~ 253 (760)
..+++|+.|++|++||+.. ..+..+.+|...|.+++|+|++ .|++++.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 3599999999999999863 3566788999999999999973 799999999999
Q ss_pred EEeCCc------eEEE-EecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 254 IWKDGV------CVQS-IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 254 iwd~~~------~~~~-~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
+|+... .... -.|.+.|++++|+|+|. +++++.||.|++|+..
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999211 1122 34788999999999998 8999999999999976
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.2e-28 Score=265.59 Aligned_cols=273 Identities=11% Similarity=0.083 Sum_probs=205.7
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCC-------eEEEEeCCCCCCccc-----eeeeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDR-------TVRFWSLDPSDKRKY-----HSSKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg-------~i~iWd~~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
-.-+|+|++|+|+++ |++|+.|. .|++|++........ .....+.+|...|.++++..+ .
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-------~ 85 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-------I 85 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-------E
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-------E
Confidence 456899999999999 88887543 599999875543211 112346688889999987653 2
Q ss_pred EEEE-----------eCCCeEEEEECCCCceE----EEE-----eCCCccEEEEEec--CCeEE--EEECCCeEEEEECC
Q 004329 85 LVSG-----------GMDTMVLVWDLGSGEKV----QTL-----QGHKLQVTGVTLD--NEDIV--SSSVDSTLKRWRKG 140 (760)
Q Consensus 85 l~sg-----------s~dg~I~vwd~~~~~~~----~~l-----~~h~~~V~~l~~~--~~~l~--sgs~dg~v~vwd~~ 140 (760)
+++| +.|+.+++|++.+.... ... ..+...+.+++|+ +.+++ +++.|++|++||..
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 4554 45788999998665322 111 1344568889997 44555 44579999999985
Q ss_pred --ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC--ce--EEeecCCCceEEEEEeCCCe-EEEEeCCC---
Q 004329 141 --KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK--CA--QTFVGHTDTVRGLSVMPGVG-IISASHDC--- 210 (760)
Q Consensus 141 --~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~--~~--~~~~~h~~~V~~l~~~~~~~-l~s~s~dg--- 210 (760)
+++..+ .|...|.+++|+|+|++++.+.++.+++|+... .. .....|...|++++|+|++. +++++.|+
T Consensus 166 ~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 166 DLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp TTEEEEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred CCcEEEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 444444 477889999999999955444566666666332 22 23456889999999999887 88888887
Q ss_pred -eEEEEecCCc-----eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe--cCCcEEEEEEccCC
Q 004329 211 -TIRLWALTGQ-----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG 279 (760)
Q Consensus 211 -~I~iwd~~~~-----~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~--~~~~v~~v~~~~~g 279 (760)
.+++|++... ....+.+|...|++++|+|+| +|++|+.|++|+||| +++++..+. |...|++++|+|||
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 6888986432 234567899999999999999 999999999999999 677888763 89999999999999
Q ss_pred c-EEEEEcCCcEEEEeCCCC
Q 004329 280 D-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 280 ~-lvt~~~dg~I~vw~~~~~ 298 (760)
+ |++|+.|++||||++.+.
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 9 899999999999999654
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.7e-29 Score=265.77 Aligned_cols=285 Identities=21% Similarity=0.315 Sum_probs=208.2
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC--CCCCCCcEEEEE
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP--NEEFPEGGLVSG 88 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~~~~~l~sg 88 (760)
...+.+|.+.|++++|+|++. |++|+.||+|++||+.++. ........+.+|...|.+++|+|. +. ++++|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~-----~l~s~ 77 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGR-----IIASA 77 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCS-----EEEEE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-CcceecceeccCCCcEEEEEEcCCCCCC-----EEEEE
Confidence 345789999999999999998 9999999999999998543 233456778899999999999994 54 69999
Q ss_pred eCCCeEEEEECCCC---------ceEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECC--ceeEEe-------
Q 004329 89 GMDTMVLVWDLGSG---------EKVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKG--KLVEFW------- 146 (760)
Q Consensus 89 s~dg~I~vwd~~~~---------~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~--~~~~~~------- 146 (760)
+.||.|++||+.++ +.+..+.+|...|.+++|+ +..+++++.||.|++||.. +....+
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 99999999999887 5678888999999999997 3469999999999999974 221111
Q ss_pred ------ecCCcCeEEEEEeCC---Cc-EEEEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCCC-----eEEEEe
Q 004329 147 ------EAHNAPIQTVIRIPS---GE-IVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPGV-----GIISAS 207 (760)
Q Consensus 147 ------~~~~~~v~~v~~~~~---~~-l~tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~~-----~l~s~s 207 (760)
..|...+.++.|+|+ +. +++++.++.+.+|+... ....+.+|...|++++|+|++ .+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 257788999999996 44 88999999998887443 255677899999999999985 499999
Q ss_pred CCCeEEEEecCCc-eEEEeecCCCcEEEEEEeCCC-eEEEE----eCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccC
Q 004329 208 HDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASG-LIVSG----SEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN 278 (760)
Q Consensus 208 ~dg~I~iwd~~~~-~~~~~~~h~~~v~~v~~~p~~-~l~s~----s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~ 278 (760)
.||.|++||+... .......+..........+.. .+..+ .....+.+|+ ....+..+. |...|++++|+|+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 9999999997532 222222233333333333333 33332 3344455565 344555555 7889999999999
Q ss_pred Cc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 279 GD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 279 g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
++ +++++.||.|++|++.+++...
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCEEEEecCCCcEEEEecCcCcchh
Confidence 98 9999999999999999876544
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-27 Score=286.67 Aligned_cols=272 Identities=14% Similarity=0.104 Sum_probs=216.4
Q ss_pred eccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 15 LRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
..||.+.|++++|+|++. ||+|+.||+|++|+..+.+ . .....|...|.+++|+| +. +|++++.|++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-----~-~~~~~~~~~V~~l~fsp-g~-----~L~S~s~D~~ 80 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----V-VIKLEDRSAIKEMRFVK-GI-----YLVVINAKDT 80 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-----E-EEECSSCCCEEEEEEET-TT-----EEEEEETTCE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-----E-EEEcCCCCCEEEEEEcC-CC-----EEEEEECcCe
Confidence 348999999999999998 9999999999999986432 2 22345788999999999 55 6999999999
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCcee-------------EEeecCCcCeEEEEE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLV-------------EFWEAHNAPIQTVIR 158 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~-------------~~~~~~~~~v~~v~~ 158 (760)
|++||+.+++++..+. |...|++++|+ ++++++|+.||+|++||..... ..+.+|..+|++++|
T Consensus 81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp EEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 9999999999988886 77899999997 6679999999999999986322 123568899999999
Q ss_pred eCCC--cEEEEECCCcEEEEeCCC--ceEEeecC------------------CCceEEEEEeCCCe-EEEEeCCCeEEEE
Q 004329 159 IPSG--EIVSGSSDTTIKLWKGKK--CAQTFVGH------------------TDTVRGLSVMPGVG-IISASHDCTIRLW 215 (760)
Q Consensus 159 ~~~~--~l~tgs~dg~i~iwd~~~--~~~~~~~h------------------~~~V~~l~~~~~~~-l~s~s~dg~I~iw 215 (760)
+|++ .+++|+.||.| +||.+. ..+.+..| ...|++++|+|++. |++++.||+|++|
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 9974 48899999999 999664 44455544 57899999999776 9999999999999
Q ss_pred ecC-CceEEE--e---ec-------------CCCcEEEEEEe----CCC--eEEEEeCC-----CcEEEEeC--------
Q 004329 216 ALT-GQVLME--M---VG-------------HTAIVYSIDSH----ASG--LIVSGSED-----RFAKIWKD-------- 257 (760)
Q Consensus 216 d~~-~~~~~~--~---~~-------------h~~~v~~v~~~----p~~--~l~s~s~D-----g~I~iwd~-------- 257 (760)
|+. ++++.. + .. |...|++++|+ |++ .+++|+.| ..+++|+.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 984 555543 2 12 34579999995 554 67788776 37889882
Q ss_pred ------------CceEEEEe--cCCcEEEEEEcc----------CCc-EEEEEcCCcEEEEeCCCCee
Q 004329 258 ------------GVCVQSIE--HPGCVWDAKFLE----------NGD-IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 258 ------------~~~~~~~~--~~~~v~~v~~~~----------~g~-lvt~~~dg~I~vw~~~~~~~ 300 (760)
..+.+.+. +.+.|.++.+.+ +.. +++++.||.|++|++.++..
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 13344443 567899998866 232 78889999999999987753
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=265.21 Aligned_cols=239 Identities=21% Similarity=0.335 Sum_probs=192.0
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC--CCCCCCcEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP--NEEFPEGGLV 86 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~~~~~l~ 86 (760)
++...+.+|.+.|++++|+|++. |++|+.||.|++|++.... ......+.+|...|.+++|+++ +. +++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~-----~l~ 73 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGT-----ILA 73 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCS-----EEE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCC-----EEE
Confidence 45678899999999999999998 9999999999999997332 3466778899999999999977 54 799
Q ss_pred EEeCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECCc----eeEEeecCCcCeEEE
Q 004329 87 SGGMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKGK----LVEFWEAHNAPIQTV 156 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~v~~v 156 (760)
+|+.||.|++||+.+++ ....+..|...|.+++|+ +..+++++.||.|++||... ....+..|...|.++
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence 99999999999999887 677788899999999997 34699999999999998752 344667888999999
Q ss_pred EEeC-------------CCc-EEEEECCCcEEEEeCCC------ceEEeecCCCceEEEEEeCC---Ce-EEEEeCCCeE
Q 004329 157 IRIP-------------SGE-IVSGSSDTTIKLWKGKK------CAQTFVGHTDTVRGLSVMPG---VG-IISASHDCTI 212 (760)
Q Consensus 157 ~~~~-------------~~~-l~tgs~dg~i~iwd~~~------~~~~~~~h~~~V~~l~~~~~---~~-l~s~s~dg~I 212 (760)
.|+| ++. +++|+.||.|++||.+. ....+.+|...|.+++|+|+ +. +++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9998 344 77888888888888432 33456678888888888887 55 8888888888
Q ss_pred EEEecCCc----eEEEe--ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 213 RLWALTGQ----VLMEM--VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 213 ~iwd~~~~----~~~~~--~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
++||+... ..... ..|...|.+++|+|++ +|++++.||.|++|+
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 88886542 22222 2377788888888888 888888888888888
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-27 Score=251.88 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=231.5
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS 132 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg 132 (760)
......+.+|...|++++|+|++. ++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGD-----LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSC-----EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred ccccEEEEEeeceEEEEEEcCCCC-----EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence 445567899999999999999987 79999999999999999999999999999999999997 56799999999
Q ss_pred eEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEECC-----CcEEEEeCCC-------------ceEEeecCCC-
Q 004329 133 TLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSD-----TTIKLWKGKK-------------CAQTFVGHTD- 190 (760)
Q Consensus 133 ~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~d-----g~i~iwd~~~-------------~~~~~~~h~~- 190 (760)
.|++||.. +....+. +...+.++.|+|++. +++++.+ +.|++||... ....+..|..
T Consensus 97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999974 5555665 888999999999988 7788888 9999998432 3345556666
Q ss_pred -ceEEEEEeCCCe-EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE
Q 004329 191 -TVRGLSVMPGVG-IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS 263 (760)
Q Consensus 191 -~V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~ 263 (760)
.+.+++|+|++. +++++.||.|++||+. +..+..+..|...|.+++|+|++ +|++++.|+.|++|| .+..+..
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 999999999765 9999999999999986 47788888999999999999999 999999999999999 7788888
Q ss_pred EecCCcEEEEEEccCCc-EEEEEcCC--------------cEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceee
Q 004329 264 IEHPGCVWDAKFLENGD-IVTACSDG--------------VTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKL 328 (760)
Q Consensus 264 ~~~~~~v~~v~~~~~g~-lvt~~~dg--------------~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 328 (760)
+.+...+.+++|+|++. +++++.++ .+++|+..+++....+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------------------- 312 (369)
T 3zwl_B 256 YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----------------------- 312 (369)
T ss_dssp EECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-----------------------
T ss_pred ecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-----------------------
Confidence 88999999999999999 78888888 78888887776544321
Q ss_pred ecCCCCceeeccCCCcceEEEEeeCCceEEEEEeccccc
Q 004329 329 EDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK 367 (760)
Q Consensus 329 ~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~ 367 (760)
-....+..+..+++|...+.. +.++.+++|+...+.
T Consensus 313 --~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 313 --GHFGPLNTVAISPQGTSYASG-GEDGFIRLHHFEKSY 348 (369)
T ss_dssp --CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEECHHH
T ss_pred --cccCcEEEEEECCCCCEEEEE-cCCCeEEEEECcccc
Confidence 011122333445566655444 445889999976653
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=9.5e-28 Score=264.00 Aligned_cols=243 Identities=20% Similarity=0.373 Sum_probs=207.1
Q ss_pred CccccCCCceEeEEec--cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQLSSELR--GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~--gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
|+.||..+.++.+.+. +|...|++|+|+|+|. |++|+.||+|++||+.+++ ....+.+|...+.++.+.+
T Consensus 127 V~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----~~~~~~~h~~~v~~~s~~~-- 199 (420)
T 4gga_A 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVGSLSWNS-- 199 (420)
T ss_dssp EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEET--
T ss_pred EEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCCceEEEeeCC--
Confidence 5789999998887665 6788999999999998 9999999999999998665 6778889999999998864
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC------ceeEEeec
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG------KLVEFWEA 148 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~------~~~~~~~~ 148 (760)
. ++++|+.|+.+++||.... ..+..+.+|...++++.+. +..+++++.|+.+++|+.. ..+.....
T Consensus 200 ~-----~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 200 Y-----ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp T-----EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred C-----EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 2 5999999999999998765 5567889999999999997 6679999999999999864 24567788
Q ss_pred CCcCeEEEEEeCCCc--EEE--EECCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEEe--CCCeEEEEec-C
Q 004329 149 HNAPIQTVIRIPSGE--IVS--GSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISAS--HDCTIRLWAL-T 218 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~--l~t--gs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~s--~dg~I~iwd~-~ 218 (760)
|...|.+++|+|.+. +++ |+.|++|++||..+ +...+. +...+.++.|++++. +++++ .|+.|++||+ +
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 999999999999765 444 45799999999664 334444 446788999999655 66554 7999999997 5
Q ss_pred CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
++++..+.+|...|++++|+|+| +|++|+.|++|++||
T Consensus 354 ~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 78899999999999999999999 999999999999999
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.6e-28 Score=263.54 Aligned_cols=245 Identities=16% Similarity=0.237 Sum_probs=209.0
Q ss_pred CccccCCCceEeEEecc-----CCCCEEEEEEcCC----Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE
Q 004329 1 MMDIDFKEYQLSSELRG-----HEDDVRGICVCDN----VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP 70 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~g-----H~~~V~~v~~~~~----~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~ 70 (760)
|..||+.+.+....+.. |...|++++|+|+ +. |++|+.||.|++||+.+++ ....+.+|...|.+
T Consensus 46 v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i~~ 120 (366)
T 3k26_A 46 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHGNAINE 120 (366)
T ss_dssp EEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCCSCEEE
T ss_pred EEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCCCcEEE
Confidence 45788887777777664 5578999999988 56 9999999999999998665 56678899999999
Q ss_pred EEEeC-CCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE---eCCCccEEEEEec--CCeEEEEECCCeEEEEECCc--e
Q 004329 71 LAWIS-PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL---QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK--L 142 (760)
Q Consensus 71 l~~~~-~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~--~ 142 (760)
++|+| ++. ++++|+.||.|++||+.+++.+..+ .+|...|.+++|+ ++.+++++.||.|++||... .
T Consensus 121 ~~~~~~~~~-----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 121 LKFHPRDPN-----LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195 (366)
T ss_dssp EEECSSCTT-----EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred EEECCCCCC-----EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence 99999 555 6999999999999999999998888 6899999999997 56799999999999999752 1
Q ss_pred e----------------------------EEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC--------------
Q 004329 143 V----------------------------EFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK-------------- 180 (760)
Q Consensus 143 ~----------------------------~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~-------------- 180 (760)
. .....|...|.++.|+ ...+++++.|+.|++||...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 196 MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 1 2223489999999999 45688999999999999543
Q ss_pred --ceEEeecCCCceEEEEEeCC--Ce-EEEEeCCCeEEEEecCCc-----eEEEeecC--CCcEEEEEEeCCC-eEEEEe
Q 004329 181 --CAQTFVGHTDTVRGLSVMPG--VG-IISASHDCTIRLWALTGQ-----VLMEMVGH--TAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 181 --~~~~~~~h~~~V~~l~~~~~--~~-l~s~s~dg~I~iwd~~~~-----~~~~~~~h--~~~v~~v~~~p~~-~l~s~s 247 (760)
....+..|...|.+++|+|+ +. +++++.||.|++||+... ....+.+| ...|.+++|+|++ +|++++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 25677789999999999997 66 889999999999998642 45567777 7999999999999 999999
Q ss_pred CCCcEEEEe
Q 004329 248 EDRFAKIWK 256 (760)
Q Consensus 248 ~Dg~I~iwd 256 (760)
.||.|++||
T Consensus 355 ~dg~i~iwd 363 (366)
T 3k26_A 355 DDASIWRWD 363 (366)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999998
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=9.7e-28 Score=260.21 Aligned_cols=244 Identities=16% Similarity=0.211 Sum_probs=201.2
Q ss_pred ceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe--CCCccEEEEEecC---CeEEEEE
Q 004329 55 YHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ--GHKLQVTGVTLDN---EDIVSSS 129 (760)
Q Consensus 55 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~~~---~~l~sgs 129 (760)
......+.+|...|.+++|+|++.. ++++|+.||.|++||+.+++....+. +|...|.+++|++ +.+++++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT----TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT----EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC----EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3456678899999999999999832 69999999999999999888877765 6999999999974 5699999
Q ss_pred CCCeEEEEECC-ceeEEeecC---CcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCC--
Q 004329 130 VDSTLKRWRKG-KLVEFWEAH---NAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGV-- 201 (760)
Q Consensus 130 ~dg~v~vwd~~-~~~~~~~~~---~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~-- 201 (760)
.|+.|++||.. .....+..+ ...|.+++|+|++. +++|+.|+.|++||.. +....+.+|...|.+++|+|++
T Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCC
Confidence 99999999986 444455444 47899999999987 7899999999999964 4667888999999999999976
Q ss_pred eEEEEeCCCeEEEEecC-----CceEEEeecCCCcEEEEEEeC-CC-eEEEEeCCCcEEEEe--CCceEEEEe-cC----
Q 004329 202 GIISASHDCTIRLWALT-----GQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HP---- 267 (760)
Q Consensus 202 ~l~s~s~dg~I~iwd~~-----~~~~~~~~~h~~~v~~v~~~p-~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~---- 267 (760)
.+++++.|+.|++||+. +..+..+ +|...|.+++|+| ++ +|++++.|+.|++|| .+.....+. |.
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 48999999999999975 3444444 7999999999999 88 999999999999999 344433332 21
Q ss_pred -------------CcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 268 -------------GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 268 -------------~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+.+..++|+|+|++ +++.||.|++||+.+++.+..+
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEE
T ss_pred ccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeee
Confidence 34555777777777 7788999999999998876544
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.2e-28 Score=267.42 Aligned_cols=274 Identities=18% Similarity=0.250 Sum_probs=219.4
Q ss_pred CCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeC-CCCCCCCcEEEEEeCCCeEEE
Q 004329 20 DDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWIS-PNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 20 ~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~~~~~l~sgs~dg~I~v 96 (760)
.....++++|+.. +++++.||.|+||++..... .......+.+|.+.|.+++|+| ++. ++++|+.||.|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-~~~~~~~~~~h~~~V~~~~~~p~~~~-----~l~s~s~dg~v~v 108 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-VDKNVPLVCGHTAPVLDIAWCPHNDN-----VIASGSEDCTVMV 108 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-CCTTCCCBCCCSSCEEEEEECTTCTT-----EEEEEETTSEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-CCCCCceEecCCCCEEEEEeCCCCCC-----EEEEEeCCCeEEE
Confidence 3455688888876 45689999999999864321 1123456788999999999999 555 6999999999999
Q ss_pred EECCCC-------ceEEEEeCCCccEEEEEec--C-CeEEEEECCCeEEEEECC--ceeEEe--ecCCcCeEEEEEeCCC
Q 004329 97 WDLGSG-------EKVQTLQGHKLQVTGVTLD--N-EDIVSSSVDSTLKRWRKG--KLVEFW--EAHNAPIQTVIRIPSG 162 (760)
Q Consensus 97 wd~~~~-------~~~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~v~vwd~~--~~~~~~--~~~~~~v~~v~~~~~~ 162 (760)
||+.++ +++..+.+|...|.+++|+ + +.+++++.||.|++||.. +....+ ..|...|.+++|+|++
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 188 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS
T ss_pred EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC
Confidence 999987 6788899999999999998 2 469999999999999975 566677 7899999999999998
Q ss_pred c-EEEEECCCcEEEEeCCC--ceEEe-ecCCCc-eEEEEEeCCCe-EEEE---eCCCeEEEEecCC-ce-EEEe-ecCCC
Q 004329 163 E-IVSGSSDTTIKLWKGKK--CAQTF-VGHTDT-VRGLSVMPGVG-IISA---SHDCTIRLWALTG-QV-LMEM-VGHTA 230 (760)
Q Consensus 163 ~-l~tgs~dg~i~iwd~~~--~~~~~-~~h~~~-V~~l~~~~~~~-l~s~---s~dg~I~iwd~~~-~~-~~~~-~~h~~ 230 (760)
. +++++.||.|++||.+. ....+ ..|.+. +.++.|+|++. +++| +.|+.|++||+.. .. +... ..|..
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 268 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS 268 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC
Confidence 7 88999999999999664 44556 678776 89999999888 5566 5899999999854 22 3332 36788
Q ss_pred cEEEEEEeCCC-eEE-EEeCCCcEEEEe--CCce-EEE---EecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCee
Q 004329 231 IVYSIDSHASG-LIV-SGSEDRFAKIWK--DGVC-VQS---IEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 231 ~v~~v~~~p~~-~l~-s~s~Dg~I~iwd--~~~~-~~~---~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~ 300 (760)
.+.+++|+|++ .++ +|+.|+.|++|| .+.. +.. +.|...|++++|+|++.+++ +.++.+++|++.+++.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~-s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV-NKCEIARFYKLHERKC 345 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG-GGTEEEEEEEEETTEE
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce-ecceeEEEEEcCCCcE
Confidence 89999999999 664 566899999999 4441 333 34568999999999998543 3677999999988764
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.7e-29 Score=269.77 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=194.3
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC--ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEE
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLK 135 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~ 135 (760)
....|.+.|++++|+|++. ++++|+.||.|++||+.++ +.+..+.+|...|.+++|+ ++++++++.||+|+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~-----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRT-----EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp EEEECSSCCSCCEECSSSS-----EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred eEecCCCcEEEEEECCCCC-----EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3445678999999999987 6999999999999999988 7778889999999999997 56799999999999
Q ss_pred EEECCc-----eeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC-----ceEEeec-CCCceEEEEEeCCCe-
Q 004329 136 RWRKGK-----LVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK-----CAQTFVG-HTDTVRGLSVMPGVG- 202 (760)
Q Consensus 136 vwd~~~-----~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~-----~~~~~~~-h~~~V~~l~~~~~~~- 202 (760)
+||... ....+..|...|.+++|+|++. +++|+.|+.|++||... ....+.. |...|.+++|+|++.
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 998753 4667778999999999999987 88999999999999654 3567777 999999999999766
Q ss_pred EEEEeCCCeEEEEecC-------------------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCce
Q 004329 203 IISASHDCTIRLWALT-------------------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC 260 (760)
Q Consensus 203 l~s~s~dg~I~iwd~~-------------------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~ 260 (760)
+++++.|+.|++||+. ++++..+ +|...|++++|+|++ +|++++.||.|++|| .+.+
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 9999999999999974 4455666 999999999999999 999999999999999 4444
Q ss_pred ----EEEEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCC
Q 004329 261 ----VQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 261 ----~~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~ 298 (760)
+..+. |...|++++|+|+|++++++.++.+.+|+....
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 282 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES 282 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC-
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCC
Confidence 44444 778999999999999666666666778887643
No 95
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=9e-28 Score=258.65 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=210.4
Q ss_pred CccccCCCce--EeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQ--LSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~--l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
|..||+.+.+ ...++.+|...|++++|+|++. |++++.||.|++||+.+++ ......+..|...|.+++|+|++
T Consensus 32 v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~ 108 (372)
T 1k8k_C 32 VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT---WKPTLVILRINRAARCVRWAPNE 108 (372)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE---EEEEEECCCCSSCEEEEEECTTS
T ss_pred EEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe---eeeeEEeecCCCceeEEEECCCC
Confidence 4568887766 8899999999999999999988 9999999999999997553 22344457799999999999998
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCce---EEE-EeCCCccEEEEEec--CCeEEEEECCCeEEEEEC------------
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSGEK---VQT-LQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK------------ 139 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~~~---~~~-l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~------------ 139 (760)
. ++++++.||.|++||+..++. ... ..+|...|.+++|+ +..+++++.||.|++||.
T Consensus 109 ~-----~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 109 K-----KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp S-----EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred C-----EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 7 699999999999999988763 233 35789999999997 557999999999999994
Q ss_pred --------CceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeC--CCceEEeecCCCceEEEEEeCCCeEEEEeC
Q 004329 140 --------GKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKG--KKCAQTFVGHTDTVRGLSVMPGVGIISASH 208 (760)
Q Consensus 140 --------~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~--~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~ 208 (760)
++....+..|...|.+++|+|++. +++++.|+.|++||. .+....+..|...|.+++|+|++.+++++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 263 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 263 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEe
Confidence 467778889999999999999986 889999999999995 456778889999999999999988776779
Q ss_pred CCeEEEEecCC--ce---E------------------------------------EEe-ecCCCcEEEEEEe-CC----C
Q 004329 209 DCTIRLWALTG--QV---L------------------------------------MEM-VGHTAIVYSIDSH-AS----G 241 (760)
Q Consensus 209 dg~I~iwd~~~--~~---~------------------------------------~~~-~~h~~~v~~v~~~-p~----~ 241 (760)
|+.|++|++.. .. + ..+ .+|...|++++|+ ++ .
T Consensus 264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 99999999754 21 0 222 3899999999966 55 4
Q ss_pred eEEEEeCCCcEEEEe
Q 004329 242 LIVSGSEDRFAKIWK 256 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd 256 (760)
+|++|+.||.|++||
T Consensus 344 ~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred eEEEecCCCceEEEE
Confidence 999999999999999
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=5.1e-28 Score=267.46 Aligned_cols=260 Identities=28% Similarity=0.435 Sum_probs=210.6
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
|..||..+.+...++.+|.+.|.+++| .+..|++|+.||+|++||+.+++ ....+.+|...|.+++|++.
T Consensus 155 i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~~---- 224 (435)
T 1p22_A 155 IKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGE-----MLNTLIHHCEAVLHLRFNNG---- 224 (435)
T ss_dssp EEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCC-----EEEEECCCCSCEEEEECCTT----
T ss_pred EEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCc-----EEEEEcCCCCcEEEEEEcCC----
Confidence 467999999999999999999999999 33349999999999999998775 56778899999999999642
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceE---EEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKV---QTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQT 155 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~---~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~ 155 (760)
.+++|+.||.|++||+.+++.. ..+.+|...|.+++++++.+++|+.||.|++||.. +.+..+.+|...|.+
T Consensus 225 ---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 225 ---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301 (435)
T ss_dssp ---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE
Confidence 5999999999999999887655 67789999999999999999999999999999975 677888999999999
Q ss_pred EEEeCCCcEEEEECCCcEEEEeCC--CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-Cc---------eEE
Q 004329 156 VIRIPSGEIVSGSSDTTIKLWKGK--KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQ---------VLM 223 (760)
Q Consensus 156 v~~~~~~~l~tgs~dg~i~iwd~~--~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~---------~~~ 223 (760)
+.+. ...+++|+.||.|++||.. ++...+.+|...|.++++ .+..+++|+.||.|++||+. +. ++.
T Consensus 302 ~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 379 (435)
T 1p22_A 302 LQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379 (435)
T ss_dssp EEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred EEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence 9985 3458999999999999954 567788899999999999 35569999999999999973 22 788
Q ss_pred EeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEcc
Q 004329 224 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE 277 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~ 277 (760)
.+.+|...|.+++| ++ .+++++.||.|++|| ............+..++.|.+
T Consensus 380 ~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 380 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp EECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred eccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 88999999999999 45 899999999999999 333333333444556665543
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=257.69 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=202.2
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC--CCceEEEEeCCCccEEEEEec----CCeEEEEEC
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG--SGEKVQTLQGHKLQVTGVTLD----NEDIVSSSV 130 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~ 130 (760)
....+.+|...|.+++|+|++. +|++|+.||.|++||+. +++.+..+.+|...|++++|+ +..+++++.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-----EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccEEecCCcccEEEEEEcCCCC-----EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 3456789999999999999987 69999999999999998 556778899999999999996 567999999
Q ss_pred CCeEEEEECC--c--eeEEeecCCcCeEEEEEeCC--Cc-EEEEECCCcEEEEeCCC----ceEEeecCCCceEEEEEeC
Q 004329 131 DSTLKRWRKG--K--LVEFWEAHNAPIQTVIRIPS--GE-IVSGSSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMP 199 (760)
Q Consensus 131 dg~v~vwd~~--~--~~~~~~~~~~~v~~v~~~~~--~~-l~tgs~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~ 199 (760)
||.|++||.. + ....+..|...|.+++|+|+ +. +++++.|+.|++||... ....+..|...|.+++|+|
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 9999999874 2 66777789999999999998 65 88999999999999654 3446678999999999999
Q ss_pred -------------CC-eEEEEeCCCeEEEEecCC-----ceEEEeecCCCcEEEEEEeCC---C-eEEEEeCCCcEEEEe
Q 004329 200 -------------GV-GIISASHDCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 200 -------------~~-~l~s~s~dg~I~iwd~~~-----~~~~~~~~h~~~v~~v~~~p~---~-~l~s~s~Dg~I~iwd 256 (760)
++ .+++++.||.|++||+.. .....+.+|...|.+++|+|+ + ++++++.||.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 34 499999999999999742 245677789999999999999 8 999999999999999
Q ss_pred --CCc---eEEEEe---cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCC
Q 004329 257 --DGV---CVQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 257 --~~~---~~~~~~---~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
.+. ...... |...|++++|+|+|. +++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 221 223322 777999999999999 899999999999998754
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.6e-28 Score=258.97 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=203.6
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 81 (760)
.|++.+.+.+.++.+|.+.|++++|+|++. |++|+.| .+++|+..+.. ..... +...+..+++.+++..
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~-- 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVA-----HIMSQ--EMRHLSKVRMLHRTNY-- 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEE-----EEEEE--ECSCCCEEEECTTSSE--
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcc-----eeeee--ecCCeEEEEEcCCCCE--
Confidence 466777788888899999999999999999 6666655 58999987443 22222 2234778888887762
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCc---eeEEeecCCcCeEEEEE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGK---LVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~v~~v~~ 158 (760)
++++|+.|+.|++||..+++++..+. |...|.++.++++.++++ .|+.|++||... .+..+.. +...+++
T Consensus 73 --~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 73 --VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp --EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred --EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 34678889999999999999998887 677999999997776665 488999999753 3333333 3444556
Q ss_pred eCCCcEEE--EECCCcEEEEeCCCc------------------eEEeecCCCceEEEEEeCCCe-EEEEeCCCe-EEEEe
Q 004329 159 IPSGEIVS--GSSDTTIKLWKGKKC------------------AQTFVGHTDTVRGLSVMPGVG-IISASHDCT-IRLWA 216 (760)
Q Consensus 159 ~~~~~l~t--gs~dg~i~iwd~~~~------------------~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~-I~iwd 216 (760)
++ +.++. |+.||.|++||.... ...+.+|...|++++|+|++. +++|+.|++ |++||
T Consensus 146 s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 146 SN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred Ec-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 66 55554 689999999997642 678899999999999999776 999999998 99999
Q ss_pred cC-CceEEEee-c-CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCc--eEEE--------------------Ee--c
Q 004329 217 LT-GQVLMEMV-G-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV--CVQS--------------------IE--H 266 (760)
Q Consensus 217 ~~-~~~~~~~~-~-h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~--~~~~--------------------~~--~ 266 (760)
+. ++++..+. + |...|++++|+|++ +|++++.|++|++|| .+. .... +. .
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 74 78888888 5 99999999999999 999999999999999 211 1111 11 1
Q ss_pred CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 267 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 267 ~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
......++|+++|. +++++.||.+++|++..+.
T Consensus 305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 12346789999998 8899999999999986543
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-29 Score=273.90 Aligned_cols=304 Identities=8% Similarity=-0.009 Sum_probs=227.4
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
+.-...|.+++|+|||+ +||+|.|++|+ |...++ .+.+|...|.+++|+|++ .++.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------~l~gh~~~v~~V~FsPdg------------~~~~~ 69 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------DINCNSKNLFHVKEFPLE------------FENKL 69 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------CCSSBGGGTEEEEEECCC------------CCCTT
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc--------eecCCCccEEEEEECCCC------------CcceE
Confidence 34568999999999999 99999999999 644332 336899999999999976 35555
Q ss_pred EEEECCCCceEEEEe-CCCccEEEEEec--CCeEEEEECCCeEEEEECCceeEEeecCCc-----CeEEEEEeCCCc-EE
Q 004329 95 LVWDLGSGEKVQTLQ-GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKLVEFWEAHNA-----PIQTVIRIPSGE-IV 165 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-----~v~~v~~~~~~~-l~ 165 (760)
.+|+.+ ....+. .|...|.+++|+ +..+++++.||+|++||...++..+. |.. .+.+++|+|+|+ ++
T Consensus 70 ~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 70 DFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp TTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred EEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence 555543 222232 468899999998 66699999999999999877777777 665 599999999998 88
Q ss_pred EEECCCcEEEEeCCCc---------eEEe----ecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceE----EEe-ec
Q 004329 166 SGSSDTTIKLWKGKKC---------AQTF----VGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVL----MEM-VG 227 (760)
Q Consensus 166 tgs~dg~i~iwd~~~~---------~~~~----~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~----~~~-~~ 227 (760)
+|+.||+|++||.... ..++ .+|.+.|.+++|+|++ +++++.|++|++||+.++.. .++ .+
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 9999999999995543 3555 5688899999999999 99999999999999876543 456 37
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-C-Cce-EEEEecCCcEEEEEE--ccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 228 HTAIVYSIDSHASGLIVSGSEDRFAKIWK-D-GVC-VQSIEHPGCVWDAKF--LENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 228 h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~-~~~-~~~~~~~~~v~~v~~--~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
|...|.+++|+ +..+++++ +++|++|| . +.. ....+|.+.|++++| +|++. +++++.||. ++|..+.-.
T Consensus 225 h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~-- 299 (588)
T 2j04_A 225 SRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH-- 299 (588)
T ss_dssp CSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE--
T ss_pred ccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE--
Confidence 88999999999 44888887 69999999 3 333 333368889999999 99998 788888999 999987211
Q ss_pred chhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCce-EEEEEe
Q 004329 302 DSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNG-VAYSWD 362 (760)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~-~~~~w~ 362 (760)
..... .+.+..++.+++|+..+.+.....+ .....-+..+.|+. .+...+
T Consensus 300 ---------~spd~-~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 300 ---------VTADN-IIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---------EECCC-SSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ---------ECCCc-eEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 01111 1111236789999988776443333 22223355555542 344444
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.6e-27 Score=257.69 Aligned_cols=250 Identities=20% Similarity=0.326 Sum_probs=208.5
Q ss_pred CccccCCCceEeEEecc-CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRG-HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~g-H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|+.||..+.+....+.. |...|++++|+|++. |++|+.||.|++||+.+++ ....+.+|...|.+++|.+ .
T Consensus 115 v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~--~ 187 (401)
T 4aez_A 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQARVGCLSWNR--H 187 (401)
T ss_dssp EEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEEET--T
T ss_pred EEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----EEEEecCCCCceEEEEECC--C
Confidence 46799999998888876 899999999999998 9999999999999998665 5667789999999999943 2
Q ss_pred CCCCcEEEEEeCCCeEEEEECC-CCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLG-SGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~-~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
++++|+.||.|++||+. .+.....+.+|...|++++|+ +..+++|+.||.|++||.. .....+..|...|
T Consensus 188 -----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 188 -----VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp -----EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred -----EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 59999999999999998 567788899999999999997 5679999999999999985 5667788899999
Q ss_pred EEEEEeCCCc--EEEEE--CCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EEEE--eCCCeEEEEecCCc---e
Q 004329 154 QTVIRIPSGE--IVSGS--SDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-IISA--SHDCTIRLWALTGQ---V 221 (760)
Q Consensus 154 ~~v~~~~~~~--l~tgs--~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~s~--s~dg~I~iwd~~~~---~ 221 (760)
.+++|+|++. +++|+ .|+.|++||... ....+ .+...|.+++|+|++. ++++ +.||.|++||+... .
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 9999999765 44554 699999999654 34444 4678899999999776 6664 48999999997542 3
Q ss_pred EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEE
Q 004329 222 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS 263 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~ 263 (760)
...+.+|...|.+++|+|++ ++++++.||.|++|+ .++.+..
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 34467899999999999999 999999999999999 4444443
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=254.02 Aligned_cols=299 Identities=14% Similarity=0.157 Sum_probs=222.2
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC---CCeEEEEECCCCceEEEE-eCCCccEEEEEec-C----CeEEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM---DTMVLVWDLGSGEKVQTL-QGHKLQVTGVTLD-N----EDIVS 127 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~---dg~I~vwd~~~~~~~~~l-~~h~~~V~~l~~~-~----~~l~s 127 (760)
......+|...|.+++|+|++.. ++++|+. ||.|++||+.+++..... .+|...|.+++|+ + ..+++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~----l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAK----FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSE----EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hhhhccCCCCceEEEEEcCCCce----EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 44556789999999999998863 4667766 999999999988765443 3799999999997 3 56999
Q ss_pred EECCCeEEEEECC--c-eeEEeecCCcCeEEEEE------eCCCc-EEEEECCCcEEEEeCCC---ceEEeecCCC----
Q 004329 128 SSVDSTLKRWRKG--K-LVEFWEAHNAPIQTVIR------IPSGE-IVSGSSDTTIKLWKGKK---CAQTFVGHTD---- 190 (760)
Q Consensus 128 gs~dg~v~vwd~~--~-~~~~~~~~~~~v~~v~~------~~~~~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~---- 190 (760)
|+.||.|++||.. + ....+.+|...|.++.+ ++++. +++++.||.|++||... ....+..|..
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999875 4 67888999999999966 45665 88999999999999654 4566666554
Q ss_pred ceEEEE----EeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeC---CC-eEEEEeCCCcEEEEe--CCc
Q 004329 191 TVRGLS----VMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA---SG-LIVSGSEDRFAKIWK--DGV 259 (760)
Q Consensus 191 ~V~~l~----~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p---~~-~l~s~s~Dg~I~iwd--~~~ 259 (760)
.+.+++ |+|++. +++++.||.|++||+..........|...|.+++|+| ++ .+++++.||.|++|| .+.
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 899998 566555 9999999999999998777677788999999999999 77 999999999999999 222
Q ss_pred eEEEE------ecCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecC
Q 004329 260 CVQSI------EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDL 331 (760)
Q Consensus 260 ~~~~~------~~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l 331 (760)
....+ .|...|++++|+|++. +++++.||.|++|++..+.................. ...+.....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~ 319 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS------VSLLQNVTL 319 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE------EEEEEEEEC
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc------cceeecccc
Confidence 22111 4888999999999987 788999999999999876543322111100000000 001111122
Q ss_pred CCCceeeccCCCcceEEEEeeCCceEEEEEeccc
Q 004329 332 PGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKE 365 (760)
Q Consensus 332 ~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~ 365 (760)
....+..+.++++|...++..+.++.+++|+...
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 2233445556778877776666668999999654
No 102
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.5e-27 Score=259.59 Aligned_cols=251 Identities=17% Similarity=0.182 Sum_probs=213.5
Q ss_pred CccccCCCce------EeEEeccCCCCEEEEEEcCC----C---e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCC--
Q 004329 1 MMDIDFKEYQ------LSSELRGHEDDVRGICVCDN----V---G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-- 64 (760)
Q Consensus 1 I~~~d~~~~~------l~~~l~gH~~~V~~v~~~~~----~---~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-- 64 (760)
|..||+.+.+ +...+.+|...|++++|+|+ + . |++++.||.|++|++.++..........+..|
T Consensus 38 i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 117 (397)
T 1sq9_A 38 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 117 (397)
T ss_dssp EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCT
T ss_pred EEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccc
Confidence 4578887766 88999999999999999999 8 7 99999999999999986653222236677778
Q ss_pred ---CCCeEEEEEe----CCCCCCCCcE-EEEEeCCCeEEEEECCC------CceEE-----EE-------eCCCccEEEE
Q 004329 65 ---TSFVGPLAWI----SPNEEFPEGG-LVSGGMDTMVLVWDLGS------GEKVQ-----TL-------QGHKLQVTGV 118 (760)
Q Consensus 65 ---~~~V~~l~~~----~~~~~~~~~~-l~sgs~dg~I~vwd~~~------~~~~~-----~l-------~~h~~~V~~l 118 (760)
...|.+++|+ |++. + +++++.||.|++||+.+ ++.+. .+ ..|...|.++
T Consensus 118 ~~~~~~v~~~~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 118 DMKKHSFWALKWGASNDRLLS-----HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp TGGGSCEEEEEEECCC----C-----EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccCCCcEEEEEEeeccCCCCc-----eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE
Confidence 5999999999 8877 7 89999999999999988 66555 66 4488999999
Q ss_pred Eec-CCeEEEEECCCeEEEEECC--ceeEEeec---C---CcCeEEEEEeCCCc-EEEEECC---CcEEEEeCC--CceE
Q 004329 119 TLD-NEDIVSSSVDSTLKRWRKG--KLVEFWEA---H---NAPIQTVIRIPSGE-IVSGSSD---TTIKLWKGK--KCAQ 183 (760)
Q Consensus 119 ~~~-~~~l~sgs~dg~v~vwd~~--~~~~~~~~---~---~~~v~~v~~~~~~~-l~tgs~d---g~i~iwd~~--~~~~ 183 (760)
+|+ ++.+++++.||.|++||.. +.+..+.. | ...|.+++|+|++. +++++.| +.|++||.. +...
T Consensus 193 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 193 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 272 (397)
T ss_dssp EECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence 998 2289999999999999975 66777888 8 99999999999987 7789999 999999964 4566
Q ss_pred Eeec-------------CCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceEEEee------cC--------------
Q 004329 184 TFVG-------------HTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVLMEMV------GH-------------- 228 (760)
Q Consensus 184 ~~~~-------------h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~~~~~------~h-------------- 228 (760)
.+.+ |...|.+++|+|++. +++++.||.|++||+ +++.+..+. +|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 352 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 352 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccc
Confidence 7777 999999999999766 999999999999997 567788888 78
Q ss_pred -CCcEEEEEEeCCC-----------eEEEEeCCCcEEEEe
Q 004329 229 -TAIVYSIDSHASG-----------LIVSGSEDRFAKIWK 256 (760)
Q Consensus 229 -~~~v~~v~~~p~~-----------~l~s~s~Dg~I~iwd 256 (760)
...|++++|+|++ +|++++.||.|++|+
T Consensus 353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999999999995 899999999999998
No 103
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=99.96 E-value=5.7e-30 Score=196.89 Aligned_cols=71 Identities=35% Similarity=0.707 Sum_probs=67.8
Q ss_pred CCCcccccCccceEEEEeecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCC
Q 004329 381 GMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF 451 (760)
Q Consensus 381 ~~~~~~~~g~~yd~vf~vdi~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~~ 451 (760)
+.+|..|+|++|||||+|||++|.|++|||||.+||||+|||+||++|+||++|+|||++||++|+++.++
T Consensus 5 ~~~k~~~~GkeYDyVFdVdi~dG~~~lkLpyN~~dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~~~~~ 75 (80)
T 2k89_A 5 TSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQML 75 (80)
T ss_dssp SSSCEEETTEEESEEEEECCSSSCSCEEEEECTTSCHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHSTTTT
T ss_pred CCCceeecCccccEEEEEEcCCCCcccccCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999998764
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=2e-26 Score=242.28 Aligned_cols=244 Identities=20% Similarity=0.350 Sum_probs=206.9
Q ss_pred CccccCCCceEeEEec--cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQLSSELR--GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~--gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
|+.||+.+.++.+.++ +|...|++++|+|+++ |++|+.||+|++|++.+++ ....+.+|...+.++.+.+
T Consensus 47 V~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----~~~~~~~h~~~~~~~~~~~-- 119 (318)
T 4ggc_A 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVGSLSWNS-- 119 (318)
T ss_dssp EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEET--
T ss_pred EEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----eEEEecCccceEEEeecCC--
Confidence 4689999999888775 6788899999999999 9999999999999998765 6677889999998877654
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCC-ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC------ceeEEeec
Q 004329 78 EEFPEGGLVSGGMDTMVLVWDLGSG-EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG------KLVEFWEA 148 (760)
Q Consensus 78 ~~~~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~------~~~~~~~~ 148 (760)
. .+++|+.++.+++|+.... ..+..+.+|...+.++.+. +..+++++.||+|++||.. ........
T Consensus 120 ~-----~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 120 Y-----ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp T-----EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred C-----EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 3 5999999999999999876 4567788999999999997 6679999999999999975 23455667
Q ss_pred CCcCeEEEEEeCCCc-E---EEEECCCcEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEE--eCCCeEEEEec-CC
Q 004329 149 HNAPIQTVIRIPSGE-I---VSGSSDTTIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISA--SHDCTIRLWAL-TG 219 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l---~tgs~dg~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~--s~dg~I~iwd~-~~ 219 (760)
+...|.++.+.+.+. + ++++.++.|++||.... ......+...+..+.++|++. ++++ +.|+.|++||+ ++
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 888999999999765 2 35678899999996543 334556788899999999655 5544 47999999997 57
Q ss_pred ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 220 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 220 ~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+++..+.+|...|++++|+|++ +|++|+.||+|+|||
T Consensus 275 ~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 8899999999999999999999 999999999999998
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-28 Score=267.69 Aligned_cols=280 Identities=14% Similarity=0.203 Sum_probs=209.8
Q ss_pred CCceEeEEeccCCCCEEEEEEcC----------CCe-EEEEECCCeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEEEe
Q 004329 7 KEYQLSSELRGHEDDVRGICVCD----------NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLAWI 74 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~----------~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~~~ 74 (760)
++++...++..|..-+..+.+.| ++. +++++ .|+.. ++ ....+ .+|.+.|++++|+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~~~-g~-----~~~~~~~~h~~~V~~~~~s 72 (437)
T 3gre_A 5 HHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGNLR-GK-----LIATLMENEPNSITSSAVS 72 (437)
T ss_dssp ---------CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGGCC-CC-----EEEEECTTTTSCEEEEEEE
T ss_pred ccccCCCChhHHHHHhccCCCCCChhchhhcCCccccccccc------ccccc-ce-----EEeeeccCCCCceEEEEEC
Confidence 45666666666666666665544 444 44433 48754 33 55666 8899999999999
Q ss_pred C-CCCCCCCcEEEEEeCCCeEEEEECCC---Cc---eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-----
Q 004329 75 S-PNEEFPEGGLVSGGMDTMVLVWDLGS---GE---KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG----- 140 (760)
Q Consensus 75 ~-~~~~~~~~~l~sgs~dg~I~vwd~~~---~~---~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~----- 140 (760)
| ++. +|++|+.||.|++||+.+ +. ....+ +|...|.+++|+ ++.+++|+.||+|++||..
T Consensus 73 ~~~~~-----~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 146 (437)
T 3gre_A 73 PGETP-----YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE 146 (437)
T ss_dssp CSSSC-----EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET
T ss_pred CCCCC-----EEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC
Confidence 9 776 699999999999999876 33 23333 499999999997 5669999999999999763
Q ss_pred ceeEEeec------------CCcCeEEEE--EeCCCc-EEEEECCCcEEEEeCC--CceEEeec--CCCceEEEEEeCCC
Q 004329 141 KLVEFWEA------------HNAPIQTVI--RIPSGE-IVSGSSDTTIKLWKGK--KCAQTFVG--HTDTVRGLSVMPGV 201 (760)
Q Consensus 141 ~~~~~~~~------------~~~~v~~v~--~~~~~~-l~tgs~dg~i~iwd~~--~~~~~~~~--h~~~V~~l~~~~~~ 201 (760)
+....... +...+.++. +++++. +++|+.|+.|++||.+ +....+.+ |...|++++|+|++
T Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 147 SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence 22222221 445566666 446666 8899999999999965 45667777 89999999999976
Q ss_pred e-EEEEeCCCeEEEEecC-CceEEEee-cCCCcEEEEEEeC----CC-eEEEEeCCCcEEEEe--CCceEEEEe------
Q 004329 202 G-IISASHDCTIRLWALT-GQVLMEMV-GHTAIVYSIDSHA----SG-LIVSGSEDRFAKIWK--DGVCVQSIE------ 265 (760)
Q Consensus 202 ~-l~s~s~dg~I~iwd~~-~~~~~~~~-~h~~~v~~v~~~p----~~-~l~s~s~Dg~I~iwd--~~~~~~~~~------ 265 (760)
. +++|+.||.|++||+. ++++..+. .|...|.+++++| ++ ++++++.||.|++|| .+.++..+.
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 6 9999999999999975 56666665 7888999996665 56 999999999999999 577777765
Q ss_pred ---------------------cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 266 ---------------------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 266 ---------------------~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|...|++++|+ ++. +++|+.||.|++||+.+++....+.
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 44568999999 666 8999999999999999988765543
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=8.8e-27 Score=257.85 Aligned_cols=233 Identities=15% Similarity=0.241 Sum_probs=190.9
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEEeCCC------------ccEEEEE
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-----------KVQTLQGHK------------LQVTGVT 119 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-----------~~~~l~~h~------------~~V~~l~ 119 (760)
.|.+.|.+++|+|++. +|++|+.||.|++||+.+++ ....+.+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~-----~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-----LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSS-----EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCC-----EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 3678999999999987 79999999999999998876 577889998 8899999
Q ss_pred ec--C--CeEEEEECCCeEEEEECCceeE-----------------------------------------E-eecCCcCe
Q 004329 120 LD--N--EDIVSSSVDSTLKRWRKGKLVE-----------------------------------------F-WEAHNAPI 153 (760)
Q Consensus 120 ~~--~--~~l~sgs~dg~v~vwd~~~~~~-----------------------------------------~-~~~~~~~v 153 (760)
|+ + ..+++++.||+|++||...... . ..+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 97 2 4699999999999998643111 2 35799999
Q ss_pred EEEEEeCCCc-EEEEECCCcEEEEeCCCceE----------EeecCCCceEEEEEeCCC--eEEEEeCCCeEEEEecCC-
Q 004329 154 QTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ----------TFVGHTDTVRGLSVMPGV--GIISASHDCTIRLWALTG- 219 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~----------~~~~h~~~V~~l~~~~~~--~l~s~s~dg~I~iwd~~~- 219 (760)
.+++|+|++. +++| .|+.|++||...... .+.+|...|.+++|+|++ .+++++.||.|++||+..
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 9999999988 5566 899999999874322 245799999999999975 499999999999999754
Q ss_pred ce----EEEeecCCC------------cEEEEEEeCCC-eEEEEeCCCcEEEEe--C-CceEEEEecCCc----------
Q 004329 220 QV----LMEMVGHTA------------IVYSIDSHASG-LIVSGSEDRFAKIWK--D-GVCVQSIEHPGC---------- 269 (760)
Q Consensus 220 ~~----~~~~~~h~~------------~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~-~~~~~~~~~~~~---------- 269 (760)
+. ...+.+|.. .|.+++|+|++ +|++++. +.|++|| . +.++..+.....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 33 577878876 99999999999 8999888 9999999 3 666666653232
Q ss_pred ------EEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 270 ------VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 270 ------v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
+..++|+|+|. +++|+.||.|++||+.+++...
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 33499999999 8899999999999999988753
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=5.7e-27 Score=259.06 Aligned_cols=243 Identities=16% Similarity=0.226 Sum_probs=189.1
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce--EEEEeCCCccEEEEEec---CCeEEEEECC
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK--VQTLQGHKLQVTGVTLD---NEDIVSSSVD 131 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~~---~~~l~sgs~d 131 (760)
......+|...|+|++|+|.... +|++|+.||.|++||+.+++. ...+.+|...|++++|+ ++.|++|+.|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~----~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPS----TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTT----CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred ecccCCCCCCCEEEEEEeCCCCC----EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 34456778999999999997654 599999999999999987754 34456899999999996 4579999999
Q ss_pred CeEEEEECCc-eeEEeec---CCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCCe--E
Q 004329 132 STLKRWRKGK-LVEFWEA---HNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGVG--I 203 (760)
Q Consensus 132 g~v~vwd~~~-~~~~~~~---~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~~--l 203 (760)
|+|++||... ....+.. +...+.++.+++++. +++|+.||.|++||.. +....+.+|...|.+++|+|++. +
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEE
Confidence 9999999863 3333332 344678899999987 7899999999999964 45667889999999999999653 7
Q ss_pred EEEeCCCeEEEEecCC-c---eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCC------c
Q 004329 204 ISASHDCTIRLWALTG-Q---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG------C 269 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~~-~---~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~------~ 269 (760)
++++.|+.|++||+.. + .+....+|...|++++|+|++ +|++++.||.|++|| .+.+...+. |.. .
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 8999999999999743 2 223345799999999999999 999999999999999 455554442 321 3
Q ss_pred EEEEEEccCCc-EEEEE------------cCCcEEEEeCCCCeeech
Q 004329 270 VWDAKFLENGD-IVTAC------------SDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 270 v~~v~~~~~g~-lvt~~------------~dg~I~vw~~~~~~~~~~ 303 (760)
+....|+|++. +++++ .++.|++||..+++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 34556777666 44443 245799999988876543
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=250.99 Aligned_cols=286 Identities=18% Similarity=0.237 Sum_probs=198.9
Q ss_pred CccccCCCceEeEEec-------------cCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC
Q 004329 1 MMDIDFKEYQLSSELR-------------GHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~-------------gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~ 65 (760)
|..||+.+.+....+. +|...|.+++|+| ++. |++++.||.|++||+.++. ....+ .+.
T Consensus 68 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~-~~~ 141 (408)
T 4a11_B 68 IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-----TADVF-NFE 141 (408)
T ss_dssp EEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-----EEEEE-ECS
T ss_pred EEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-----cceec-cCC
Confidence 3567776655544443 6999999999999 555 9999999999999998654 33333 378
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CC-eEEEEECCCeEEEEECCc-
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NE-DIVSSSVDSTLKRWRKGK- 141 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~v~vwd~~~- 141 (760)
..+.++.|++.+.. ..++++|+.||.|++||+.+++.+..+.+|...|.+++|+ +. .+++++.||.|++||...
T Consensus 142 ~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 142 ETVYSHHMSPVSTK--HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219 (408)
T ss_dssp SCEEEEEECSSCSS--CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred CceeeeEeecCCCC--CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence 88999999997642 2379999999999999999999999999999999999997 34 488999999999999852
Q ss_pred --eeEEe---------------ecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCceE--EeecC------CCceEEE
Q 004329 142 --LVEFW---------------EAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ--TFVGH------TDTVRGL 195 (760)
Q Consensus 142 --~~~~~---------------~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~--~~~~h------~~~V~~l 195 (760)
....+ ..|...|.+++|+|++. +++++.||.|++||...... ....+ .......
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence 33333 56889999999999987 88999999999999664332 11111 1112222
Q ss_pred EEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEE
Q 004329 196 SVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVW 271 (760)
Q Consensus 196 ~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~ 271 (760)
....+..+++++.|+.|++||+ +++.+..+.+|...|++++|+|++ +|++++.||.|++|| .++.+.........
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~- 378 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK- 378 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-
Confidence 2233556889999999999996 578888899999999999999999 999999999999999 44444433322222
Q ss_pred EEEEccCCc--EEEEEcCCcEEEEeCC
Q 004329 272 DAKFLENGD--IVTACSDGVTRIWTVH 296 (760)
Q Consensus 272 ~v~~~~~g~--lvt~~~dg~I~vw~~~ 296 (760)
..+.+... +.+.+.++.+++|+..
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------
T ss_pred -cccccccceeecccCccCceeecCCc
Confidence 22333222 6677789999999864
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-27 Score=279.58 Aligned_cols=237 Identities=22% Similarity=0.346 Sum_probs=199.4
Q ss_pred eEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC--CCCCCCcEEEEE
Q 004329 12 SSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP--NEEFPEGGLVSG 88 (760)
Q Consensus 12 ~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~~~~~l~sg 88 (760)
...+.+|.+.|++++|+|++. |++|+.||+|++||+.++. ......+.+|.+.|.+++|+++ +. ++++|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~-----~l~s~ 73 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGT-----ILASC 73 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCS-----EEEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---CccceeccCCcCceEEEEecCCCCCC-----EEEEE
Confidence 467889999999999999998 9999999999999987432 3466788899999999999988 54 79999
Q ss_pred eCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec----CCeEEEEECCCeEEEEECCc----eeEEeecCCcCeEEEEE
Q 004329 89 GMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD----NEDIVSSSVDSTLKRWRKGK----LVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 89 s~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~v~~v~~ 158 (760)
+.||.|++||+.+++ ....+.+|...|.+++|+ ++.+++|+.||.|++||... ....+..|...|.++.|
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 999999999999886 677888999999999997 34699999999999999753 35567789999999999
Q ss_pred eCC-------------Cc-EEEEECCCcEEEEeCC------CceEEeecCCCceEEEEEeCC---Ce-EEEEeCCCeEEE
Q 004329 159 IPS-------------GE-IVSGSSDTTIKLWKGK------KCAQTFVGHTDTVRGLSVMPG---VG-IISASHDCTIRL 214 (760)
Q Consensus 159 ~~~-------------~~-l~tgs~dg~i~iwd~~------~~~~~~~~h~~~V~~l~~~~~---~~-l~s~s~dg~I~i 214 (760)
+|. +. +++|+.||.|++||.+ .....+.+|...|.+++|+|+ +. +++++.||.|++
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 993 44 8999999999999854 234567789999999999998 66 999999999999
Q ss_pred EecCCc------eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 215 WALTGQ------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 215 wd~~~~------~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
||+... ......+|...|++++|+|++ ++++++.||.|++|+
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 997543 333344688899999999999 999999999999999
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.9e-26 Score=252.92 Aligned_cols=237 Identities=21% Similarity=0.324 Sum_probs=202.2
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC----------CceEEEEeCCCccEEEEEec--CC-eE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS----------GEKVQTLQGHKLQVTGVTLD--NE-DI 125 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~----------~~~~~~l~~h~~~V~~l~~~--~~-~l 125 (760)
.....|.+.|++++|+|++.. ++++++.||.|++||+.+ .+....+.+|...|++++|+ +. .+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~----~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNAC----VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEE----EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred EEEEcCCCcEEEEEECCCCCc----EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 455679999999999997432 699999999999999976 57788899999999999997 33 79
Q ss_pred EEEECCCeEEEEECCc---------eeEEeecCCcCeEEEEEeCC-Cc-EEEEECCCcEEEEeCC-----CceEEeecCC
Q 004329 126 VSSSVDSTLKRWRKGK---------LVEFWEAHNAPIQTVIRIPS-GE-IVSGSSDTTIKLWKGK-----KCAQTFVGHT 189 (760)
Q Consensus 126 ~sgs~dg~v~vwd~~~---------~~~~~~~~~~~v~~v~~~~~-~~-l~tgs~dg~i~iwd~~-----~~~~~~~~h~ 189 (760)
++|+.||.|++|+... ....+..|...|.+++|+|+ +. +++++.||.|++||.+ .....+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999753 14567789999999999994 44 7799999999999966 3556778999
Q ss_pred CceEEEEEeCCCe--EEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--C----
Q 004329 190 DTVRGLSVMPGVG--IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--D---- 257 (760)
Q Consensus 190 ~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~---- 257 (760)
..|++++|+|++. +++|+.||.|++||++ +..+..+.+|...|.+++|+|++ ++++++.|+.|++|| .
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999654 8899999999999986 46788888999999999999998 699999999999999 2
Q ss_pred ----------CceEEEEe-cCCcEEEEEEccCCc--EEEEEcCCcEEEEeCCCCe
Q 004329 258 ----------GVCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 258 ----------~~~~~~~~-~~~~v~~v~~~~~g~--lvt~~~dg~I~vw~~~~~~ 299 (760)
...+.... |...|++++|+|++. +++++.||.|++|++....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 14444443 777999999999998 7888899999999987543
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-25 Score=249.01 Aligned_cols=273 Identities=13% Similarity=0.088 Sum_probs=215.1
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCC---Cc-cce--------------------------------------
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSD---KR-KYH-------------------------------------- 56 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~---~~-~~~-------------------------------------- 56 (760)
..++.+++|+++|.++.++.++.|++||+.+++ .. .+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357899999999996667778999999988775 10 000
Q ss_pred ----------eeeEeeCCCCCeEEEEEeCCCCCCCCcE-EEEEeCCCeEEEEECC--CCceEEEEe--CCCccEEEEEec
Q 004329 57 ----------SSKILLGHTSFVGPLAWISPNEEFPEGG-LVSGGMDTMVLVWDLG--SGEKVQTLQ--GHKLQVTGVTLD 121 (760)
Q Consensus 57 ----------~~~~~~~h~~~V~~l~~~~~~~~~~~~~-l~sgs~dg~I~vwd~~--~~~~~~~l~--~h~~~V~~l~~~ 121 (760)
......+|.+.|.+++|+|++. + +++|+.||.|++||+. +++.+..+. .|...|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-----~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-----RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS-----EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC-----EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 0001124556899999999987 4 4899999999999999 888888876 577899999997
Q ss_pred --CCeEEEEECCCeEEEEECCc------eeEEeecCCcCeEEEEEeCC---Cc-EEEEECCCcEEEEeCC--CceEE-ee
Q 004329 122 --NEDIVSSSVDSTLKRWRKGK------LVEFWEAHNAPIQTVIRIPS---GE-IVSGSSDTTIKLWKGK--KCAQT-FV 186 (760)
Q Consensus 122 --~~~l~sgs~dg~v~vwd~~~------~~~~~~~~~~~v~~v~~~~~---~~-l~tgs~dg~i~iwd~~--~~~~~-~~ 186 (760)
+..+++|+.||.+++|+... ....+.+|...|++++|+|+ +. +++|+.|+.|++||.. +.... +.
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 56799999999999998742 33367789999999999999 76 8899999999999954 44555 55
Q ss_pred cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeec-------------------------CCCcEEEEEEeC
Q 004329 187 GHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVG-------------------------HTAIVYSIDSHA 239 (760)
Q Consensus 187 ~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~-------------------------h~~~v~~v~~~p 239 (760)
+|...|.+++|+ ++. +++++.|+.|++||+. ++++..+.. +...|.+++++|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 899999999999 665 9999999999999974 566666652 245799999999
Q ss_pred CC-eEEEEe-CCCcEEEEeC----C---ceEEEEecCCcEEEEEEccCCcEEEEEc-------CCcEEEEeCCC
Q 004329 240 SG-LIVSGS-EDRFAKIWKD----G---VCVQSIEHPGCVWDAKFLENGDIVTACS-------DGVTRIWTVHS 297 (760)
Q Consensus 240 ~~-~l~s~s-~Dg~I~iwd~----~---~~~~~~~~~~~v~~v~~~~~g~lvt~~~-------dg~I~vw~~~~ 297 (760)
++ ++++++ .|+.|++|+. + ..++.+...+.|++++|+|++.+++.+. +..|++|.++.
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99 888888 8999999994 2 4556666558999999999655555544 45588887653
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.3e-26 Score=252.47 Aligned_cols=240 Identities=24% Similarity=0.351 Sum_probs=205.9
Q ss_pred EEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCC-----ccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 13 SELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDK-----RKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~-----~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
..+.+|.+.|++++|+|+ +. |++++.||.|++|++.+... ........+.+|...|.+++|+|++.. +|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----~l 197 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG----YL 197 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT----EE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC----eE
Confidence 445689999999999997 45 99999999999999975211 113456778899999999999998763 59
Q ss_pred EEEeCCCeEEEEECCCCce-------EEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECC-----ceeEEeecCC
Q 004329 86 VSGGMDTMVLVWDLGSGEK-------VQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKG-----KLVEFWEAHN 150 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~-------~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~ 150 (760)
++|+.||.|++|++.++.. ...+.+|...|.+++|+ +..+++++.||.|++||.+ .....+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999987422 45677899999999996 4458999999999999985 4567788999
Q ss_pred cCeEEEEEeCCCc--EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCC----
Q 004329 151 APIQTVIRIPSGE--IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTG---- 219 (760)
Q Consensus 151 ~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~---- 219 (760)
..|++++|+|++. +++|+.||.|++||.+. ....+..|...|.+++|+|++. +++++.||.|++||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999876 77999999999999653 5678889999999999999663 89999999999999854
Q ss_pred -----------ceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 220 -----------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 220 -----------~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
..+..+.+|...|++++|+|++ ++++++.||.|++|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 6777888999999999999998 799999999999998
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.8e-25 Score=246.39 Aligned_cols=289 Identities=11% Similarity=0.056 Sum_probs=225.4
Q ss_pred ccccC--CCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 2 MDIDF--KEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 2 ~~~d~--~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
+.+|. .+++....+..|. .+.+++|+|++. +++++.|+.|++||+.+++.........+.+|...|.+++|++++.
T Consensus 104 ~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (433)
T 3bws_A 104 IALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE 182 (433)
T ss_dssp EECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE
T ss_pred EEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE
Confidence 34555 3447777777664 455999999777 7777888999999998766221111113457899999999988876
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
++++++.|+.|++||+++++.+..+..|...+.+++|+ ++.+ ++++.|+.|++||.. +....+.. ...+
T Consensus 183 -----~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~ 256 (433)
T 3bws_A 183 -----LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLP 256 (433)
T ss_dssp -----EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEE
T ss_pred -----EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCc
Confidence 68999999999999999999999999999999999997 4455 455589999999975 44444444 3458
Q ss_pred EEEEEeCCCc-EEEEE--------CCCcEEEEeCCCc-eEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCce
Q 004329 154 QTVIRIPSGE-IVSGS--------SDTTIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQV 221 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs--------~dg~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~~ 221 (760)
.+++++|++. +++++ .|+.|++||.... ......|...+.+++|+|++. +++++.|+.|++||+....
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 9999999986 66666 5889999996543 223345667899999999774 5677899999999986544
Q ss_pred EEEeecCCCcEEEEEEeCCC-eEEEEeC---------------CCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EE
Q 004329 222 LMEMVGHTAIVYSIDSHASG-LIVSGSE---------------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV 282 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~~-~l~s~s~---------------Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lv 282 (760)
......+...+.+++|+|++ .+++++. ||.|++|| .++.+..+.+...+.+++|+|+|+ ++
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEE
Confidence 44444578889999999999 7777776 57999999 677888888877999999999998 66
Q ss_pred EEEc-CCcEEEEeCCC
Q 004329 283 TACS-DGVTRIWTVHS 297 (760)
Q Consensus 283 t~~~-dg~I~vw~~~~ 297 (760)
+++. |+.|++|+++.
T Consensus 417 ~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEETT
T ss_pred EEECCCCeEEEEEecC
Confidence 6665 99999999863
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=9.6e-26 Score=239.87 Aligned_cols=237 Identities=13% Similarity=0.130 Sum_probs=199.8
Q ss_pred EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc---eEEEEeCCCccEEEEEec--CC-eEEEEECCCe
Q 004329 60 ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE---KVQTLQGHKLQVTGVTLD--NE-DIVSSSVDST 133 (760)
Q Consensus 60 ~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~ 133 (760)
...+|.+.|.+++|+|++. ++++++.||.|++|++.+++ ....+.+|...|.+++|+ +. .+++|+.||.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~-----~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKS-----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGT-----EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred cccCCCCcEEEEEEcCCCC-----EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 3457999999999999887 69999999999999998877 345566899999999997 66 7999999999
Q ss_pred EEEEEC-C-ceeEEeec--CCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC-----------ceEEeecCCCceEEEEEe
Q 004329 134 LKRWRK-G-KLVEFWEA--HNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK-----------CAQTFVGHTDTVRGLSVM 198 (760)
Q Consensus 134 v~vwd~-~-~~~~~~~~--~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~-----------~~~~~~~h~~~V~~l~~~ 198 (760)
|++||. . .....+.. |...|.++.|+|.+.+++++.|+.|++||.+. +...+. |...|.+++|+
T Consensus 81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 999998 5 45567778 99999999999933488999999999999443 334444 88999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCC---c-eEEEeecCCCcEEEEEEeC-CC-eEEEEeCCCcEEEEe--CC------ceEEEE
Q 004329 199 PGVGIISASHDCTIRLWALTG---Q-VLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DG------VCVQSI 264 (760)
Q Consensus 199 ~~~~l~s~s~dg~I~iwd~~~---~-~~~~~~~h~~~v~~v~~~p-~~-~l~s~s~Dg~I~iwd--~~------~~~~~~ 264 (760)
|++ +++++.|+.|++||+.. . .......|...+.+++|+| ++ .+++++.||.|++|+ .. .....+
T Consensus 160 ~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 160 SSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred CCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 877 99999999999999865 2 2334557889999999999 88 999999999999999 33 556666
Q ss_pred e-cCC---------cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeech
Q 004329 265 E-HPG---------CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 265 ~-~~~---------~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~ 303 (760)
. |.. .|++++|+|++. +++++.||.|++||+.+++.+..
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 5 543 999999999998 89999999999999998876543
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=4e-26 Score=249.42 Aligned_cols=250 Identities=24% Similarity=0.335 Sum_probs=201.3
Q ss_pred CccccCCCc----eEeEEeccCCCCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCc--cceeeeEeeCCCCCeEEEE
Q 004329 1 MMDIDFKEY----QLSSELRGHEDDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKR--KYHSSKILLGHTSFVGPLA 72 (760)
Q Consensus 1 I~~~d~~~~----~l~~~l~gH~~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~--~~~~~~~~~~h~~~V~~l~ 72 (760)
|.+||+... +....+.+|.+.|++++|+| ++. |++|+.||+|++||+.++... .......+.+|...|.+++
T Consensus 59 i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 59 FLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp EEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred EEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 346776443 24456789999999999999 776 999999999999999866321 1135677889999999999
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE--eCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEe
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL--QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFW 146 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~ 146 (760)
|+|++.. ++++|+.||.|++||+.+++.+..+ .+|...|.+++|+ +..+++++.||.|++||.. +.+..+
T Consensus 139 ~~p~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 139 WHPTAQN----VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp ECSSBTT----EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECcCCCC----EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 9999743 6999999999999999999999999 8899999999997 5679999999999999975 556666
Q ss_pred -ecCCcC-eEEEEEeCCCcE-EEE---ECCCcEEEEeCCCc---eEEee-cCCCceEEEEEeCCCe-EE-EEeCCCeEEE
Q 004329 147 -EAHNAP-IQTVIRIPSGEI-VSG---SSDTTIKLWKGKKC---AQTFV-GHTDTVRGLSVMPGVG-II-SASHDCTIRL 214 (760)
Q Consensus 147 -~~~~~~-v~~v~~~~~~~l-~tg---s~dg~i~iwd~~~~---~~~~~-~h~~~V~~l~~~~~~~-l~-s~s~dg~I~i 214 (760)
..|... +.++.|+|++.+ ++| +.|+.|++||.+.. ..... .|...+.+++|+|++. ++ +++.||.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 678765 899999999985 455 58999999996642 22333 5778899999999776 54 5567999999
Q ss_pred EecCCce--EEEeec--CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 215 WALTGQV--LMEMVG--HTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 215 wd~~~~~--~~~~~~--h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
||+.... +..+.. |...|.+++|+|++ ++++ .++.+++|+
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9986433 445444 56899999999999 5553 567999999
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-26 Score=272.82 Aligned_cols=236 Identities=19% Similarity=0.333 Sum_probs=198.9
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC--CCceEEEEeCCCccEEEEEec----CCeEEEEECCC
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG--SGEKVQTLQGHKLQVTGVTLD----NEDIVSSSVDS 132 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg 132 (760)
..+.+|.+.|++++|+|++. ++++|+.||.|++||+. +++....+.+|...|.+++|+ ++.+++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-----~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSC-----CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCC-----eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 45789999999999999987 59999999999999997 456778899999999999996 45699999999
Q ss_pred eEEEEECC--c--eeEEeecCCcCeEEEEEeCC--Cc-EEEEECCCcEEEEeCCCc----eEEeecCCCceEEEEEeCC-
Q 004329 133 TLKRWRKG--K--LVEFWEAHNAPIQTVIRIPS--GE-IVSGSSDTTIKLWKGKKC----AQTFVGHTDTVRGLSVMPG- 200 (760)
Q Consensus 133 ~v~vwd~~--~--~~~~~~~~~~~v~~v~~~~~--~~-l~tgs~dg~i~iwd~~~~----~~~~~~h~~~V~~l~~~~~- 200 (760)
.|++||.. . ....+..|...|.++.|+|+ +. +++|+.||.|++||.+.. ...+.+|...|.+++|+|.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 99999864 2 56777889999999999998 66 889999999999996543 4567789999999999993
Q ss_pred -------------CeEEEEeCCCeEEEEecCC-----ceEEEeecCCCcEEEEEEeCC---C-eEEEEeCCCcEEEEe--
Q 004329 201 -------------VGIISASHDCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 201 -------------~~l~s~s~dg~I~iwd~~~-----~~~~~~~~h~~~v~~v~~~p~---~-~l~s~s~Dg~I~iwd-- 256 (760)
..+++|+.||.|++||+.. .....+.+|...|++++|+|+ + .+++++.||.|++||
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 4499999999999999743 456677899999999999999 8 999999999999999
Q ss_pred CCc------eEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCe
Q 004329 257 DGV------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 257 ~~~------~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~ 299 (760)
.+. ......|.+.|++++|+|+|. +++++.||.|++|++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 221 111123777999999999999 8999999999999998643
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=3.9e-25 Score=237.35 Aligned_cols=231 Identities=12% Similarity=0.120 Sum_probs=174.6
Q ss_pred eeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeE-EEEECCCeEE
Q 004329 57 SSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDI-VSSSVDSTLK 135 (760)
Q Consensus 57 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l-~sgs~dg~v~ 135 (760)
.......|...|.+++|+|++. ++++|+.++ +++|+..+++.......+...+.++.++++.+ ++++.|++|+
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-----~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-----CLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp --------CCCCCEEEECTTSS-----EEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred CccccccCCCceEEEEECCCCC-----EEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 3445678999999999999998 577777664 78999988776665544433344444445554 6788899999
Q ss_pred EEECC--ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCc---eEEeecCCCceEEEEEeCCCeEEE--EeC
Q 004329 136 RWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC---AQTFVGHTDTVRGLSVMPGVGIIS--ASH 208 (760)
Q Consensus 136 vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~---~~~~~~h~~~V~~l~~~~~~~l~s--~s~ 208 (760)
+||.. +.+..+. +...|.++.++++..++ +.|+.|++||.... ...+.. +...+++++ ..++. |+.
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~ 157 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFN 157 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSC
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCc
Confidence 99974 5555555 66789999998765333 34889999996643 333333 445566676 55554 689
Q ss_pred CCeEEEEecCCce-----------------EEEeecCCCcEEEEEEeCCC-eEEEEeCCCc-EEEEe--CCceEEEEe--
Q 004329 209 DCTIRLWALTGQV-----------------LMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE-- 265 (760)
Q Consensus 209 dg~I~iwd~~~~~-----------------~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~-I~iwd--~~~~~~~~~-- 265 (760)
||.|++||+.... +..+.+|...|++++|+|++ +|++|+.|++ |++|| .++++..+.
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999986532 77889999999999999999 9999999998 99999 688888887
Q ss_pred -cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCee
Q 004329 266 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 300 (760)
Q Consensus 266 -~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~ 300 (760)
|.+.|++++|+|+|. +++++.||.|++||+..+..
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 888999999999999 89999999999999987643
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-26 Score=254.27 Aligned_cols=220 Identities=8% Similarity=0.047 Sum_probs=179.8
Q ss_pred EEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 13 SELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
+.+.+|...|.+|+|+|+| .++++.+|+.+... ... ..|...|.+++|+|++. .+++++.||
T Consensus 46 ~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~------~~~-~~~~~~V~~vawSPdG~-----~LAs~s~dg 107 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE------FENKLDFELAQQNG------LLN-SQPVCYPRVCKPSPIDD-----WMAVLSNNG 107 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSSC------SST-TSCSCCEEEEEECSSSS-----CEEEEETTS
T ss_pred ceecCCCccEEEEEECCCC------CcceEEEEeCCCce------Eee-cCCCCcEEEEEECCCCC-----EEEEEeCCC
Confidence 4458999999999999999 56666666543111 111 14588999999999998 599999999
Q ss_pred eEEEEECCCCceEEEEeCCCc-----cEEEEEec--CCeEEEEECCCeEEEEECCce---------eEEe----ecCCcC
Q 004329 93 MVLVWDLGSGEKVQTLQGHKL-----QVTGVTLD--NEDIVSSSVDSTLKRWRKGKL---------VEFW----EAHNAP 152 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~h~~-----~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~---------~~~~----~~~~~~ 152 (760)
.|++||.++ ++..+. |.. .|.+++|+ ++.+++|+.||+|++||.... +..+ .+|...
T Consensus 108 ~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~ 184 (588)
T 2j04_A 108 NVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW 184 (588)
T ss_dssp CEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC
T ss_pred cEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccccc
Confidence 999999654 666667 665 59999998 666999999999999997532 4565 567789
Q ss_pred eEEEEEeCCCcEEEEECCCcEEEEeCCCce-----EEe-ecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEee
Q 004329 153 IQTVIRIPSGEIVSGSSDTTIKLWKGKKCA-----QTF-VGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMV 226 (760)
Q Consensus 153 v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~-----~~~-~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 226 (760)
|.+++|+|+| +++++.|+++++||..... +++ .+|...|.+++|+ ++.+++++ +++|++||+.+.....+.
T Consensus 185 V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 185 VTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 9999999999 9999999999999965422 456 4788999999999 66788887 799999999877774544
Q ss_pred -cCCCcEEEEEE--eCCC-eEEEEeCCCcEEEEeC
Q 004329 227 -GHTAIVYSIDS--HASG-LIVSGSEDRFAKIWKD 257 (760)
Q Consensus 227 -~h~~~v~~v~~--~p~~-~l~s~s~Dg~I~iwd~ 257 (760)
+|...++++.+ +|++ .++++++||+ ++|..
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 99999999999 9999 9999999999 99983
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=5.9e-26 Score=244.61 Aligned_cols=237 Identities=12% Similarity=0.102 Sum_probs=181.6
Q ss_pred EEeccCCCCEEEEEEcCCCeEEE-----------EECCCeEEEEeCCCCCCccceeeeE-----eeCCCCCeEEEEEeCC
Q 004329 13 SELRGHEDDVRGICVCDNVGIAT-----------SSRDRTVRFWSLDPSDKRKYHSSKI-----LLGHTSFVGPLAWISP 76 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~l~t-----------gs~Dg~i~iWd~~~~~~~~~~~~~~-----~~~h~~~V~~l~~~~~ 76 (760)
.+|.+|.+.|.++++..+. +++ ++.|+++|+|++.+.... ...... ...+...+.+++|+|+
T Consensus 67 ~~l~~~~~~v~s~~~~~~~-~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKGI-ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-LEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEETTE-EEEECCCCHHHHHHTSCCCCEEEEEEETTTTE-EEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeCCCE-EEEEECCCccEEEEecCCCcEEEEEecCCCce-EEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3577899999999886542 444 456889999998754421 111111 2234567999999999
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEEC--Ccee--EEeecCC
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRK--GKLV--EFWEAHN 150 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~--~~~~--~~~~~~~ 150 (760)
+... .+++++.|++|++||+++++++..+. |...|.+++|+ +.++++++.++ +++|+. +... .....|.
T Consensus 145 g~~l---a~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 4h5i_A 145 GTVA---AIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKN 219 (365)
T ss_dssp SSCE---EEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTT
T ss_pred CCEE---EEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCC
Confidence 9831 12345579999999999999988886 77889999998 44577776555 555543 2332 2345688
Q ss_pred cCeEEEEEeCCCc-EEEEECCC----cEEEEeCCCc------eEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-
Q 004329 151 APIQTVIRIPSGE-IVSGSSDT----TIKLWKGKKC------AQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL- 217 (760)
Q Consensus 151 ~~v~~v~~~~~~~-l~tgs~dg----~i~iwd~~~~------~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~- 217 (760)
..|.+++|+|++. +++++.|+ .++.|+.... .+.+.+|...|++++|+|++. +++|+.|++|++||+
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 8999999999998 67888776 5788885432 345678999999999999877 899999999999997
Q ss_pred CCceEEEe-ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 218 TGQVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 218 ~~~~~~~~-~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+++++..+ .+|...|++++|+|+| +|++||.|++|||||
T Consensus 300 ~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 300 DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 46777775 6899999999999999 999999999999999
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.1e-23 Score=226.45 Aligned_cols=261 Identities=11% Similarity=0.118 Sum_probs=208.3
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
+++++.|+.|++||+.+++ ....+..|. .+.+++|+|++.. ++++++.|+.|++||+.+++.+..+..+.
T Consensus 5 ~vs~~~d~~v~v~d~~~~~-----~~~~~~~~~-~~~~~~~s~dg~~----l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNK-----VTATIPVGS-NPMGAVISPDGTK----VYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEETTTTEEEEEETTTTE-----EEEEEECSS-SEEEEEECTTSSE----EEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCCEEEEEECCCCe-----EEEEeecCC-CcceEEECCCCCE----EEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 8899999999999998664 455566564 5899999999873 24677799999999999999988888665
Q ss_pred ccEEEEEec--CCeE-EEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-E-EEEECCCcEEEEeCCC--ceE
Q 004329 113 LQVTGVTLD--NEDI-VSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-I-VSGSSDTTIKLWKGKK--CAQ 183 (760)
Q Consensus 113 ~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l-~tgs~dg~i~iwd~~~--~~~ 183 (760)
.+.+++|+ ++++ ++++.++.|++||.. +....+.. ...+.+++|+|++. + ++++.++.|++||... ...
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 89999997 4455 455577999999985 44444444 45789999999987 5 5788899999999654 444
Q ss_pred EeecCCCceEEEEEeCCCe-E-EEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEe---CCCcEEEEe-
Q 004329 184 TFVGHTDTVRGLSVMPGVG-I-ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS---EDRFAKIWK- 256 (760)
Q Consensus 184 ~~~~h~~~V~~l~~~~~~~-l-~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s---~Dg~I~iwd- 256 (760)
.+..| ..+.+++|+|++. + ++++.|+.|++||+..........+...+.+++|+|++ .+++++ .++.|++||
T Consensus 153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 55444 5579999999775 4 67788999999998765555555677889999999999 777776 799999999
Q ss_pred -CCceEEEEecCCcEEEEEEccCCc-E-EEEEcCCcEEEEeCCCCeeechhhh
Q 004329 257 -DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 257 -~~~~~~~~~~~~~v~~v~~~~~g~-l-vt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
.++.+..+.....+.+++|+|+|+ + ++++.|+.|++||+.+++....+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 232 GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 677788887767789999999998 5 5667799999999999988776553
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=6.7e-25 Score=235.29 Aligned_cols=244 Identities=16% Similarity=0.227 Sum_probs=200.8
Q ss_pred CccccCCC--ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEE--eC
Q 004329 1 MMDIDFKE--YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW--IS 75 (760)
Q Consensus 1 I~~~d~~~--~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~ 75 (760)
|..||+.+ ..+...+.+|.+.|++++|+|++. |++|+.||.|++||+.++. ......|...|.+++| ++
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ------AIQIAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EEEEEECSSCEEEEEEEECS
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC------ceeeccccCceEEEEEEeCC
Confidence 45788875 344488999999999999999998 9999999999999998654 2335679999999999 66
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEe----ecCCc
Q 004329 76 PNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFW----EAHNA 151 (760)
Q Consensus 76 ~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~~~~~ 151 (760)
++. ++++++.||.|++||+++++.+..+..|. .+.++.+....+++++.++.+++|+.......+ ..+..
T Consensus 140 ~~~-----~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 213 (368)
T 3mmy_A 140 NYS-----CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKH 213 (368)
T ss_dssp SCE-----EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS
T ss_pred CCC-----EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccC
Confidence 665 69999999999999999999998888665 677888888899999999999999986432222 23345
Q ss_pred CeEEEEEeCCCc-----EEEEECCCcEEEEeCCC-----ceEEeecCCC------------ceEEEEEeCCCe-EEEEeC
Q 004329 152 PIQTVIRIPSGE-----IVSGSSDTTIKLWKGKK-----CAQTFVGHTD------------TVRGLSVMPGVG-IISASH 208 (760)
Q Consensus 152 ~v~~v~~~~~~~-----l~tgs~dg~i~iwd~~~-----~~~~~~~h~~------------~V~~l~~~~~~~-l~s~s~ 208 (760)
.+.++.+.++.. +++++.||.|++||... ....+.+|.. .|++++|+|++. +++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 293 (368)
T 3mmy_A 214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293 (368)
T ss_dssp CEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET
T ss_pred CCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc
Confidence 556666655432 89999999999999654 3456777766 799999999775 999999
Q ss_pred CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 209 DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 209 dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
||.|++||+. ++++..+.+|...|.+++|+|++ +|++++.|+..+.|+
T Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 9999999975 67888899999999999999999 999999988655554
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-24 Score=231.32 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=185.5
Q ss_pred CCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC-------
Q 004329 29 DNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG------- 100 (760)
Q Consensus 29 ~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~------- 100 (760)
+++. +++|+.||+|++||+.+++ ....+. ...|.++.|+|. +++++.|++|++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~-----~~~~~~--~~~v~~~~~~~~--------~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSK-----TITTIT--TPNPRTGGEHPA--------IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSS-----CEEEEE--EECCCTTCCCCS--------EEEECSTTEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCc-----EEEEEe--cCCceeeeeCCc--------eEEecCCCeEEEEEccCceEEee
Confidence 4555 9999999999999998765 222332 355666666654 7999999999999665
Q ss_pred --CCceEEEEe-CCCccEEEEEecC----CeEEEEECCCeEEEEECC--ceeEEe-ecCCcCeEEEEEeCCCc-EEEEEC
Q 004329 101 --SGEKVQTLQ-GHKLQVTGVTLDN----EDIVSSSVDSTLKRWRKG--KLVEFW-EAHNAPIQTVIRIPSGE-IVSGSS 169 (760)
Q Consensus 101 --~~~~~~~l~-~h~~~V~~l~~~~----~~l~sgs~dg~v~vwd~~--~~~~~~-~~~~~~v~~v~~~~~~~-l~tgs~ 169 (760)
+++.+..+. +|...|.++++++ +.+++++.||+|++||.. +..... ..|...+.+++|+|++. +++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence 555455544 7778999999964 569999999999999975 444444 34566899999999988 678899
Q ss_pred CCcEEEEeCCC--ce-EEeec-CCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeec---CCCcE--EEEEEe
Q 004329 170 DTTIKLWKGKK--CA-QTFVG-HTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVG---HTAIV--YSIDSH 238 (760)
Q Consensus 170 dg~i~iwd~~~--~~-~~~~~-h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~---h~~~v--~~v~~~ 238 (760)
||.|++||.+. .. ..+.. |..+|++++|+|++. +++++ |+.|++||++. +.+..+.. |...+ .+++|+
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 99999999654 33 56777 999999999999877 77777 55999999853 33333322 33344 369999
Q ss_pred CCC-eEEEEeC-CCcEEEEe--CCceEEEEecCCcEEEEEEcc---CCc-EEEEEcCCcEEEEeCCCC
Q 004329 239 ASG-LIVSGSE-DRFAKIWK--DGVCVQSIEHPGCVWDAKFLE---NGD-IVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 239 p~~-~l~s~s~-Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~---~g~-lvt~~~dg~I~vw~~~~~ 298 (760)
|++ ++++++. |+.|++|+ ........ .++..++|.+ ++. +++++.||.++++-....
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred CCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 999 8999888 99999998 22211111 5677888888 666 899999999998865544
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=5e-24 Score=226.05 Aligned_cols=251 Identities=18% Similarity=0.271 Sum_probs=182.5
Q ss_pred CccccCCCc----eEeEEeccCCCCEEEEEEcC--CCe-EEEEECCCeEEEEeCCCCCC----ccceeeeEeeCCCCCeE
Q 004329 1 MMDIDFKEY----QLSSELRGHEDDVRGICVCD--NVG-IATSSRDRTVRFWSLDPSDK----RKYHSSKILLGHTSFVG 69 (760)
Q Consensus 1 I~~~d~~~~----~l~~~l~gH~~~V~~v~~~~--~~~-l~tgs~Dg~i~iWd~~~~~~----~~~~~~~~~~~h~~~V~ 69 (760)
|..||+.+. ++...+.+|...|++++|+| ++. |++|+.||+|++||+.++.. ..+.....+..|...|.
T Consensus 35 i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 114 (351)
T 3f3f_A 35 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY 114 (351)
T ss_dssp EEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE
T ss_pred EEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee
Confidence 356777654 68888999999999999998 466 99999999999999986532 12245677889999999
Q ss_pred EEEEeCC--CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-------------CCCccEEEEEec-----CCeEEEEE
Q 004329 70 PLAWISP--NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-------------GHKLQVTGVTLD-----NEDIVSSS 129 (760)
Q Consensus 70 ~l~~~~~--~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-------------~h~~~V~~l~~~-----~~~l~sgs 129 (760)
+++|+|+ +. ++++++.||.|++||+.+++.+..+. .|...+.++.|+ +..+++++
T Consensus 115 ~~~~~~~~~~~-----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 115 SVKFAPAHLGL-----KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp EEEECCGGGCS-----EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred EEEEcCCCCCc-----EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 9999998 65 69999999999999998876543322 678899999996 45699999
Q ss_pred CCCeEEEEECC--c--eeEEeecCCcCeEEEEEeCCC----c-EEEEECCCcEEEEeCCCceEEee--cCCCceEEEEEe
Q 004329 130 VDSTLKRWRKG--K--LVEFWEAHNAPIQTVIRIPSG----E-IVSGSSDTTIKLWKGKKCAQTFV--GHTDTVRGLSVM 198 (760)
Q Consensus 130 ~dg~v~vwd~~--~--~~~~~~~~~~~v~~v~~~~~~----~-l~tgs~dg~i~iwd~~~~~~~~~--~h~~~V~~l~~~ 198 (760)
.|+.+.+|+.. . ....+.+|...|.+++|+|++ . +++|+.||.|++||......... .+...+......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 99999888654 2 366677899999999999997 4 88999999999999654333222 222222222222
Q ss_pred CCCe-----EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 199 PGVG-----IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 199 ~~~~-----l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+... ...+.....+.+|+. ..+.+..+.+|...|++++|+|++ +|++++.||.|++||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 2221 222233444555553 456778888999999999999999 999999999999999
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=8.3e-25 Score=238.22 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=160.8
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC---CCcEEEEEeCCCe
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF---PEGGLVSGGMDTM 93 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~---~~~~l~sgs~dg~ 93 (760)
|...+....+.+++. |++|+.|++|++||..++..........+.+|.+.|++++|+|..... ...+|++|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 333333344445555 999999999999999866533333445678999999999999821100 0127999999999
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEecC---CeEEEEECCCeEEEEECCceeEE--eecCCcCeEEEEEeCCCcEEEEE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLDN---EDIVSSSVDSTLKRWRKGKLVEF--WEAHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~v~vwd~~~~~~~--~~~~~~~v~~v~~~~~~~l~tgs 168 (760)
|++||+.++.+...+.+|...|.+++|++ ..+++|+.||+|++||....... ...+....... .++..
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-------~~s~~ 240 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-------LLTLN 240 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC-------SEEEE
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce-------EEecc
Confidence 99999998888888888999999999972 35999999999999998633221 11111110000 01111
Q ss_pred CCCcEEEEeCCCceEEeecCCCceEEEEEe-CCCe-EEEEeCCCeEEEEecC-CceEEEeecCCCcEEEE----------
Q 004329 169 SDTTIKLWKGKKCAQTFVGHTDTVRGLSVM-PGVG-IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSI---------- 235 (760)
Q Consensus 169 ~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~-~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~v~~v---------- 235 (760)
.... .......+|...+.++.|. +++. +++++.|+++++||+. +.....+..|...+..+
T Consensus 241 ~~~~-------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 241 TLPL-------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp SGGG-------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred cccc-------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 1000 1112234677888888886 4444 8888888888888863 33333333343333322
Q ss_pred --------EEeC--CC-eEEEEeCCCcEEEEe--CCceE-EEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeC
Q 004329 236 --------DSHA--SG-LIVSGSEDRFAKIWK--DGVCV-QSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 236 --------~~~p--~~-~l~s~s~Dg~I~iwd--~~~~~-~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~ 295 (760)
.++| ++ ++++|+.||.|++|| .+.+. ....|..+|++++|+|||++++.++++.+.+|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 2333 23 677888999999999 44444 4456888999999999999444445555666664
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=2.4e-22 Score=218.09 Aligned_cols=251 Identities=11% Similarity=0.096 Sum_probs=197.3
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-E-EEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-I-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l-~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
|..||+.+.++...+.+|.. +.+++|+|++. + ++++.|++|++||+.+++ ....+..+. .+.+++|+|++.
T Consensus 14 v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-----~~~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 14 ISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----VIATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp EEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----EEEEEECSS-SEEEEEECTTSS
T ss_pred EEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe-----EEEEEECCC-CccceEECCCCC
Confidence 46899999999999998864 89999999997 4 677799999999998665 444555444 899999999987
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECC--ceeEEeecCCcCe
Q 004329 79 EFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKG--KLVEFWEAHNAPI 153 (760)
Q Consensus 79 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~--~~~~~~~~~~~~v 153 (760)
. ++++++.++.|++||+.+++.+..+..| ..+.+++|+ ++.+ ++++.|+.|++||.. +....+..+ ..+
T Consensus 87 ~----l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~ 160 (391)
T 1l0q_A 87 Q----VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (391)
T ss_dssp E----EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred E----EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCc
Confidence 3 2355667799999999999988888755 468899997 4445 788889999999975 455555554 456
Q ss_pred EEEEEeCCCc-E-EEEECCCcEEEEeCCCceE-EeecCCCceEEEEEeCCCe-EEEEe---CCCeEEEEecC-CceEEEe
Q 004329 154 QTVIRIPSGE-I-VSGSSDTTIKLWKGKKCAQ-TFVGHTDTVRGLSVMPGVG-IISAS---HDCTIRLWALT-GQVLMEM 225 (760)
Q Consensus 154 ~~v~~~~~~~-l-~tgs~dg~i~iwd~~~~~~-~~~~h~~~V~~l~~~~~~~-l~s~s---~dg~I~iwd~~-~~~~~~~ 225 (760)
.+++|+|++. + ++++.++.|++||...... ....+...+.+++|+|++. +++++ .++.|++||+. ++.+..+
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 8999999987 4 5777899999999765332 2334667899999999776 66666 68999999975 5566666
Q ss_pred ecCCCcEEEEEEeCCC-eE-EEEeCCCcEEEEe--CCceEEEEe
Q 004329 226 VGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 226 ~~h~~~v~~v~~~p~~-~l-~s~s~Dg~I~iwd--~~~~~~~~~ 265 (760)
..|. .+.+++|+|++ .+ ++++.|+.|++|| .++.+..+.
T Consensus 241 ~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 241 PVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 6554 57999999999 55 6778999999999 677777775
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=1.1e-22 Score=223.97 Aligned_cols=313 Identities=12% Similarity=0.070 Sum_probs=230.0
Q ss_pred CCCCEEEEE---EcCCCe-EEEE--------------ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCC
Q 004329 18 HEDDVRGIC---VCDNVG-IATS--------------SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEE 79 (760)
Q Consensus 18 H~~~V~~v~---~~~~~~-l~tg--------------s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 79 (760)
+...+..++ |+|++. ++.. +.|+.+++|.++... ........+..+ ..+.+++|+|++.
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~-~~~~~~~~s~~~~- 135 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEG-ITHRFISRFKTG-FQPKSVRFIDNTR- 135 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTT-CSEEEEEEEECS-SCBCCCEESSSSE-
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCC-CcceEEEEEcCC-CCceEEEEeCCCe-
Confidence 445677778 777765 4332 233333555554211 112344445444 4466999999443
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEE-----EEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCC
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEKVQ-----TLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHN 150 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~~~-----~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~ 150 (760)
++++++.++.|++||+.+++... .+.+|...|.+++|+ +..+++++.|+.|++||.. +....+..|.
T Consensus 136 ----~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 136 ----LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp ----EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred ----EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence 57777888999999999998877 345788999999996 5558899999999999975 6677778899
Q ss_pred cCeEEEEEeCCCc-E-EEEECCCcEEEEeCCCc--eEEeecCCCceEEEEEeCCCe-EEEEe--------CCCeEEEEec
Q 004329 151 APIQTVIRIPSGE-I-VSGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGVG-IISAS--------HDCTIRLWAL 217 (760)
Q Consensus 151 ~~v~~v~~~~~~~-l-~tgs~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~-l~s~s--------~dg~I~iwd~ 217 (760)
..+.+++|+|++. + ++++.|+.|++||.... ...+.. ...+.+++++|++. +++++ .||.|++||+
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999987 4 35558999999996543 333433 45699999999775 77776 4899999998
Q ss_pred CCceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEc------
Q 004329 218 TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACS------ 286 (760)
Q Consensus 218 ~~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~------ 286 (760)
..........|...+.+++|+|++ .+++++.|+.|++|| .++....+.+...+.+++|+|+|+ +++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 291 DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp TTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred CCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 655555555677789999999998 567779999999999 677888888888999999999998 666665
Q ss_pred ---------CCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCceE
Q 004329 287 ---------DGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGV 357 (760)
Q Consensus 287 ---------dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~ 357 (760)
||.|++||..+++....+.. +.....+..+++|...++.+.+++.
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEA--------------------------GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEEEC--------------------------SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred cccccccccceEEEEEECCCCcEEEEecC--------------------------CCCCceEEEcCCCCEEEEEECCCCe
Confidence 57999999998876553321 1112233345677777777666688
Q ss_pred EEEEecc
Q 004329 358 AYSWDMK 364 (760)
Q Consensus 358 ~~~w~~~ 364 (760)
+++|+..
T Consensus 425 i~v~~~~ 431 (433)
T 3bws_A 425 IRVYRRD 431 (433)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 9999864
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=2e-22 Score=207.85 Aligned_cols=278 Identities=15% Similarity=0.096 Sum_probs=195.1
Q ss_pred CCceEeEEeccCCC----CEEEEEEcC-CCe---EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 7 KEYQLSSELRGHED----DVRGICVCD-NVG---IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 7 ~~~~l~~~l~gH~~----~V~~v~~~~-~~~---l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
...+++.+|+.-++ ++.++-|-. +.+ +++++. .+|++|+..++ ..++...++..|+.+|..+.+.|+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVY 99 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCC--ccceeeEEEeccCceeEEEEEcCccc
Confidence 45678888886544 345555553 332 777775 69999999865 46788999999999999999999876
Q ss_pred CCCCcEEEEEeCC-CeEEEEEC--CCC----ceEEEEeCCCccEEEEEecCCeEEEEEC---CCeEEEEEC---CceeEE
Q 004329 79 EFPEGGLVSGGMD-TMVLVWDL--GSG----EKVQTLQGHKLQVTGVTLDNEDIVSSSV---DSTLKRWRK---GKLVEF 145 (760)
Q Consensus 79 ~~~~~~l~sgs~d-g~I~vwd~--~~~----~~~~~l~~h~~~V~~l~~~~~~l~sgs~---dg~v~vwd~---~~~~~~ 145 (760)
.+ ++.+-.+ ..-.++-+ ... .....-.+|...|..+ .+++++..+. |+.|++|+. ++.+..
T Consensus 100 ~~----~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 100 NL----VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp SC----EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEE
T ss_pred ce----eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeee
Confidence 43 3333221 11112211 111 1222223455555543 5677777664 999999987 466777
Q ss_pred eecCCcCeEEEEEeC---CCc-EEEEECCCcEEEEeCC--CceEEeecCC---CceEEEEEeCCCe-E------------
Q 004329 146 WEAHNAPIQTVIRIP---SGE-IVSGSSDTTIKLWKGK--KCAQTFVGHT---DTVRGLSVMPGVG-I------------ 203 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~---~~~-l~tgs~dg~i~iwd~~--~~~~~~~~h~---~~V~~l~~~~~~~-l------------ 203 (760)
+..|...+..++|++ ++. +++|+.|++|++||.. ++++++.+|. ..+.+++|+|++. +
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 889999999999988 445 8899999999999954 5678887654 4677889999887 3
Q ss_pred EEEeCCCeEEEEecC-CceEEEe-----ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEE-E
Q 004329 204 ISASHDCTIRLWALT-GQVLMEM-----VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW-D 272 (760)
Q Consensus 204 ~s~s~dg~I~iwd~~-~~~~~~~-----~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~-~ 272 (760)
++|+.|++|++||.. ++.+..+ .+|...+.+..++ + .+++++.|++|+||| .+++++++. |...+. +
T Consensus 254 aSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 254 SLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp ----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred eccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 568899999999975 4454443 3676666555554 5 899999999999999 888999997 666555 6
Q ss_pred EEEccCCc-EEEEEcCCcEEEEeC
Q 004329 273 AKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 273 v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
++|+|||+ +++|+.|++|+|||+
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 89999999 889999999999985
No 128
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.4e-23 Score=229.76 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=183.0
Q ss_pred cCCCCEEEEEEcCCCe-E-EEEECCCeEEEEeCC--CCCCccceeeeEee--CCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 17 GHEDDVRGICVCDNVG-I-ATSSRDRTVRFWSLD--PSDKRKYHSSKILL--GHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l-~tgs~Dg~i~iWd~~--~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+|.+.|++++|+|++. | ++|+.||+|++||+. ++. ....+. .|...|.+++|+|++. +|++|+.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~ 169 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----VLKLRKRFCFSKRPNAISIAEDDT-----TVIIADK 169 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----CEEEEEEEECSSCEEEEEECTTSS-----EEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----eeeeeecccCCCCceEEEEcCCCC-----EEEEEeC
Confidence 4555899999999998 5 889999999999998 554 333443 6789999999999987 6999999
Q ss_pred CCeEEEEECCCCceEE----EEeCCCccEEEEEecC----C-eEEEEECCCeEEEEECC--ceeEE-eecCCcCeEEEEE
Q 004329 91 DTMVLVWDLGSGEKVQ----TLQGHKLQVTGVTLDN----E-DIVSSSVDSTLKRWRKG--KLVEF-WEAHNAPIQTVIR 158 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~----~l~~h~~~V~~l~~~~----~-~l~sgs~dg~v~vwd~~--~~~~~-~~~~~~~v~~v~~ 158 (760)
+|.|++|++.+++... .+.+|...|.+++|++ + .+++|+.|++|++||.. ..+.. +.+|...|.+++|
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE
Confidence 9999999998876543 7788999999999973 3 69999999999999874 45555 5689999999999
Q ss_pred eCCCc-EEEEECCCcEEEEeCCC--ceEEeec-------------------------CCCceEEEEEeCCCe-EEEEe-C
Q 004329 159 IPSGE-IVSGSSDTTIKLWKGKK--CAQTFVG-------------------------HTDTVRGLSVMPGVG-IISAS-H 208 (760)
Q Consensus 159 ~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~-------------------------h~~~V~~l~~~~~~~-l~s~s-~ 208 (760)
+ ++. +++|+.|+.|++||... ....+.. +...|.+++++|++. +++++ .
T Consensus 250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 9 876 88999999999999653 4444442 235789999999776 77777 8
Q ss_pred CCeEEEEec--C-C---ceEEEeecCCCcEEEEEEeCCCeEEEEeC-------CCcEEEEe
Q 004329 209 DCTIRLWAL--T-G---QVLMEMVGHTAIVYSIDSHASGLIVSGSE-------DRFAKIWK 256 (760)
Q Consensus 209 dg~I~iwd~--~-~---~~~~~~~~h~~~v~~v~~~p~~~l~s~s~-------Dg~I~iwd 256 (760)
|+.|++|++ . + ..+..+..| ..|.+++|+|++.+++.+. ++.|.+|.
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 999999998 3 3 456667777 8999999999775555433 45577775
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-23 Score=220.34 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=166.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCce-----------eEEee-cCCc
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKL-----------VEFWE-AHNA 151 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~-----------~~~~~-~~~~ 151 (760)
++++|+.||.|++||+.+++.+..+. ...|.++.+++. +++++.|+++++|+.... +.... .|..
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 69999999999999999998888776 456667777766 999999999999976532 22222 5668
Q ss_pred CeEEEEEeC--CCc-EEEEECCCcEEEEeCCCc--eEEe-ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceE-
Q 004329 152 PIQTVIRIP--SGE-IVSGSSDTTIKLWKGKKC--AQTF-VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVL- 222 (760)
Q Consensus 152 ~v~~v~~~~--~~~-l~tgs~dg~i~iwd~~~~--~~~~-~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~- 222 (760)
+|.++.++| ++. +++|+.||+|++||.... .... ..|...|.+++|+|++. +++|+.||.|++||++ ++.+
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~ 206 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS 206 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence 899999999 877 778999999999996543 3333 24566899999999777 8889999999999975 4555
Q ss_pred EEeec-CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe----cCCcE--EEEEEccCCc-EEEEEc-CCcE
Q 004329 223 MEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCV--WDAKFLENGD-IVTACS-DGVT 290 (760)
Q Consensus 223 ~~~~~-h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~----~~~~v--~~v~~~~~g~-lvt~~~-dg~I 290 (760)
..+.+ |...|++++|+|++ +|++++ |+.|++|| .+.+...+. |...+ .+++|+|+|+ +++++. |+.|
T Consensus 207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 207 SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 67787 99999999999999 899998 55999999 344333332 22233 4699999999 777777 9999
Q ss_pred EEEeCCCCe
Q 004329 291 RIWTVHSDK 299 (760)
Q Consensus 291 ~vw~~~~~~ 299 (760)
++|++..+.
T Consensus 286 ~v~~~~~~~ 294 (343)
T 3lrv_A 286 TIYKFDKKT 294 (343)
T ss_dssp EEEEECTTT
T ss_pred EEEEEcccc
Confidence 999997654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.4e-21 Score=216.28 Aligned_cols=292 Identities=10% Similarity=0.047 Sum_probs=222.5
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeC--CCCCCccceeeeEeeCCCCCeEEEEEeC--
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSL--DPSDKRKYHSSKILLGHTSFVGPLAWIS-- 75 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~--~~~~~~~~~~~~~~~~h~~~V~~l~~~~-- 75 (760)
|..||..+.+++.++..+.. +.+++|+|+++ |++++.|++|++||+ .+++ ....+. +...+.+++|+|
T Consensus 161 V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~ 233 (543)
T 1nir_A 161 IALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFK 233 (543)
T ss_dssp EEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCST
T ss_pred EEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCc
Confidence 45789999999999984333 89999999998 999999999999999 5433 444555 455689999999
Q ss_pred --CCCCCCCcEEEEEe-CCCeEEEEECCCCceEEEEeCC----------C-ccEEEEEec--CCe-EEEEECCCeEEEEE
Q 004329 76 --PNEEFPEGGLVSGG-MDTMVLVWDLGSGEKVQTLQGH----------K-LQVTGVTLD--NED-IVSSSVDSTLKRWR 138 (760)
Q Consensus 76 --~~~~~~~~~l~sgs-~dg~I~vwd~~~~~~~~~l~~h----------~-~~V~~l~~~--~~~-l~sgs~dg~v~vwd 138 (760)
+++ ++++++ .+++|.+||..+++++.++..+ . ..+.++.++ ++. +++...++.|.+||
T Consensus 234 ~~dg~-----~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 234 GYEDR-----YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp TCTTT-----EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred CCCCC-----EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 887 577776 5899999999999999888652 2 378888887 333 77888899999999
Q ss_pred CCc--eeE-EeecCCcCeEEEEEeCCCc-EEE-EECCCcEEEEeCCC--ceEEeec----CCCceEEEEEeCC-Ce-EEE
Q 004329 139 KGK--LVE-FWEAHNAPIQTVIRIPSGE-IVS-GSSDTTIKLWKGKK--CAQTFVG----HTDTVRGLSVMPG-VG-IIS 205 (760)
Q Consensus 139 ~~~--~~~-~~~~~~~~v~~v~~~~~~~-l~t-gs~dg~i~iwd~~~--~~~~~~~----h~~~V~~l~~~~~-~~-l~s 205 (760)
... .+. ....+...+.++.|+|+++ +++ +..+++|.+||..+ +...+.. |.+....+ ++|+ +. +++
T Consensus 309 ~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 309 YKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp CTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred ecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence 753 222 1223566688899999998 444 44689999999654 4445543 55444343 4665 55 555
Q ss_pred Ee-CCCeEEEEecC--------CceEEEeecCCCcEEEEEEeCCC-eEEEEe-------CCCcEEEEe--CCceE-EEE-
Q 004329 206 AS-HDCTIRLWALT--------GQVLMEMVGHTAIVYSIDSHASG-LIVSGS-------EDRFAKIWK--DGVCV-QSI- 264 (760)
Q Consensus 206 ~s-~dg~I~iwd~~--------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s-------~Dg~I~iwd--~~~~~-~~~- 264 (760)
+. .|++|.+||.. .++++++.+|...+..++++|++ .|++++ .+++|.+|| ++++. ..+
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 467 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 467 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee
Confidence 54 58999999974 57899999999999999999999 888876 278999999 45555 444
Q ss_pred --------ecCCcEEEEEEccCCc-EEEEE-----cCCcEEEEeCCCCeeechhh
Q 004329 265 --------EHPGCVWDAKFLENGD-IVTAC-----SDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 265 --------~~~~~v~~v~~~~~g~-lvt~~-----~dg~I~vw~~~~~~~~~~~~ 305 (760)
.+...++.+.|+|+|+ ++++. .|+.|.|||..++++...+.
T Consensus 468 v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 468 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 2466999999999999 44432 37999999999999877654
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=4.7e-21 Score=197.69 Aligned_cols=239 Identities=15% Similarity=0.116 Sum_probs=166.3
Q ss_pred CceEeEEeccCCCCEEEEEEcCCCe-EEEEEC--CCeEEEEeCCCCCC-ccceeeeEeeCCCCCeEEEEEeCCCCCCCCc
Q 004329 8 EYQLSSELRGHEDDVRGICVCDNVG-IATSSR--DRTVRFWSLDPSDK-RKYHSSKILLGHTSFVGPLAWISPNEEFPEG 83 (760)
Q Consensus 8 ~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~--Dg~i~iWd~~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 83 (760)
++++.+++++|+.+|..|.+.||.. |+...- =..-.++.+.-... ..+.....-.+|...|.++ +.+.
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~----- 146 (356)
T 2w18_A 75 QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR----- 146 (356)
T ss_dssp BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE-----
T ss_pred cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc-----
Confidence 3599999999999999999999766 332221 11112222221110 0111222223455555554 4433
Q ss_pred EEEEEe---CCCeEEEEEC-CCCceEEEEeCCCccEEEEEec-----CCeEEEEECCCeEEEEEC--CceeEEeecCC--
Q 004329 84 GLVSGG---MDTMVLVWDL-GSGEKVQTLQGHKLQVTGVTLD-----NEDIVSSSVDSTLKRWRK--GKLVEFWEAHN-- 150 (760)
Q Consensus 84 ~l~sgs---~dg~I~vwd~-~~~~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~-- 150 (760)
++.++ .|+.|++|++ .+++.+..+.+|...+..++|+ +..+++++.|++|++||. ++++.++.+|.
T Consensus 147 -lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 147 -LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp -EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred -EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 55554 5999999999 5588888888888877776664 367999999999999987 47778887653
Q ss_pred -cCeEEEEEeCCCcE-------------EEEECCCcEEEEeCCCc--eEEe-----ecCCCceEEEEEeCCCeEEEEeCC
Q 004329 151 -APIQTVIRIPSGEI-------------VSGSSDTTIKLWKGKKC--AQTF-----VGHTDTVRGLSVMPGVGIISASHD 209 (760)
Q Consensus 151 -~~v~~v~~~~~~~l-------------~tgs~dg~i~iwd~~~~--~~~~-----~~h~~~V~~l~~~~~~~l~s~s~d 209 (760)
..+.+++|+|+|.+ ++|+.|++|++||..+. ...+ .+|...+.+..++ +..+++++.|
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~D 304 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTS 304 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETT
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCC
Confidence 46778899999873 46888999999996543 3333 3666665555554 4558999999
Q ss_pred CeEEEEec-CCceEEEeecCCCcEE-EEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 210 CTIRLWAL-TGQVLMEMVGHTAIVY-SIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 210 g~I~iwd~-~~~~~~~~~~h~~~v~-~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
++|++||+ +++++.++.+|...+. +++|+|+| +|++|+.|++|+|||
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 99999997 5788899999987665 58999999 999999999999998
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=5e-21 Score=209.72 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=208.3
Q ss_pred CccccC--CCceEe--EEeccCCCCEEEEEEcC---------------CCeEEEEECC------CeEEEEeCCCCCCccc
Q 004329 1 MMDIDF--KEYQLS--SELRGHEDDVRGICVCD---------------NVGIATSSRD------RTVRFWSLDPSDKRKY 55 (760)
Q Consensus 1 I~~~d~--~~~~l~--~~l~gH~~~V~~v~~~~---------------~~~l~tgs~D------g~i~iWd~~~~~~~~~ 55 (760)
|..||+ .+.+.+ .++.+|...++.+++.+ +.+++.++.+ ++|++||++. .
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~---- 169 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y---- 169 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C----
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C----
Confidence 357898 787766 56899999999888775 5557777664 7999999973 3
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC---eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEE-EEE
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT---MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIV-SSS 129 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg---~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~-sgs 129 (760)
....+.+|...|.+++|+|++. .+++++.++ .|++||+.+++.. .+..|...+.+++|+ ++.++ +++
T Consensus 170 -~~~~l~~~~~~v~~~~~Spdg~-----~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~ 242 (415)
T 2hqs_A 170 -NQFVVHRSPQPLMSPAWSPDGS-----KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALS 242 (415)
T ss_dssp -SCEEEEEESSCEEEEEECTTSS-----EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred -CCEEEeCCCCcceeeEEcCCCC-----EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEe
Confidence 2456677899999999999998 588888875 9999999988775 567788899999998 44466 666
Q ss_pred CCCe--EEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EEEEEC-CC--cEEEEeCCC-ceEEeecCCCceEEEEEeCCC
Q 004329 130 VDST--LKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IVSGSS-DT--TIKLWKGKK-CAQTFVGHTDTVRGLSVMPGV 201 (760)
Q Consensus 130 ~dg~--v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~-dg--~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~ 201 (760)
.++. |++||.. .....+..|...+.++.|+|+|+ +++++. ++ .|++||... ....+..|...+.+++|+|++
T Consensus 243 ~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 243 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred cCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCC
Confidence 6665 8889975 34466778888999999999998 666665 45 577778554 344556677889999999987
Q ss_pred e-EEEEeCC---CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCC---cEEEEe-CCceEEEEe-cCCcEE
Q 004329 202 G-IISASHD---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR---FAKIWK-DGVCVQSIE-HPGCVW 271 (760)
Q Consensus 202 ~-l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg---~I~iwd-~~~~~~~~~-~~~~v~ 271 (760)
. +++++.+ ..|++||+.+.....+..|. .+.+++|+|+| .|++++.++ .|++|| .+.....+. |.+.|+
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred CEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 7 6666654 58999998766666666665 89999999999 788877776 799999 666666665 778999
Q ss_pred EEEEccCC
Q 004329 272 DAKFLENG 279 (760)
Q Consensus 272 ~v~~~~~g 279 (760)
+++|+|.-
T Consensus 402 ~~~~~~~~ 409 (415)
T 2hqs_A 402 FPAWSPYL 409 (415)
T ss_dssp EEEECCCC
T ss_pred CCcccccc
Confidence 99999964
No 133
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=6.6e-22 Score=215.26 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=147.4
Q ss_pred ccccCCCceE-----eEEeccCCCCEEEEEEcC--------CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCC
Q 004329 2 MDIDFKEYQL-----SSELRGHEDDVRGICVCD--------NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSF 67 (760)
Q Consensus 2 ~~~d~~~~~l-----~~~l~gH~~~V~~v~~~~--------~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~ 67 (760)
..||....+. ...+.||++.|++++|+| +++ |+|||.|++|||||+.++. +...+..|...
T Consensus 114 ~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-----~~~~~~~~~~~ 188 (393)
T 4gq1_A 114 RLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-----PILAGYPLSSP 188 (393)
T ss_dssp EEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-----EEEEEEECSSC
T ss_pred EEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-----eeeeecCCCCC
Confidence 4577665543 345789999999999997 677 9999999999999997554 45667788999
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEee
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWE 147 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~ 147 (760)
|.+++|+|++.. ++++|+.||+|++||+.+++.......+....... .++...... .......
T Consensus 189 v~~v~~~p~~~~----~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------~~s~~~~~~-------~~~~~~~ 251 (393)
T 4gq1_A 189 GISVQFRPSNPN----QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------LLTLNTLPL-------VNTCHSS 251 (393)
T ss_dssp EEEEEEETTEEE----EEEEEETTSEEEEEETTCCC----------CSCCC------SEEEESGGG-------C------
T ss_pred cEEEEECCCCCc----eEEecCCCCEEEEEECCCCcccccccccCCcccce------EEecccccc-------eeeeecc
Confidence 999999998753 59999999999999999887655443222111000 000000000 0111223
Q ss_pred cCCcCeEEEEEe-CCCc-EEEEECCCcEEEEeCCC--ceEEeecCCCceE------------------EEEEeC--CCe-
Q 004329 148 AHNAPIQTVIRI-PSGE-IVSGSSDTTIKLWKGKK--CAQTFVGHTDTVR------------------GLSVMP--GVG- 202 (760)
Q Consensus 148 ~~~~~v~~v~~~-~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~------------------~l~~~~--~~~- 202 (760)
+|...+.++.|. +++. +++++.|+++++||... ....+..|...+. ...++| ++.
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 566666666665 4555 66677777777776432 2222222222222 223333 344
Q ss_pred EEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 203 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 203 l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
+++|+.||+|++||. +++......+|...|.+++|+|+| +|++++++| +.+|+
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 667888999999997 467778888999999999999999 999998877 55554
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=1.6e-20 Score=205.83 Aligned_cols=277 Identities=9% Similarity=0.025 Sum_probs=205.7
Q ss_pred CCCCEEEEEEcCCCe--EEEEE----CCC----eEEEEeC--CCCCCccceeeeEeeCCCCCeEEEEEeCC--------C
Q 004329 18 HEDDVRGICVCDNVG--IATSS----RDR----TVRFWSL--DPSDKRKYHSSKILLGHTSFVGPLAWISP--------N 77 (760)
Q Consensus 18 H~~~V~~v~~~~~~~--l~tgs----~Dg----~i~iWd~--~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--------~ 77 (760)
+...|....|.+.+. +++|+ .|| ++++||+ .+++ ......+.+|...+..+++.+. +
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcC
Confidence 334677778888776 66886 568 9999999 7665 2223557788888887777641 0
Q ss_pred CC-CCCcEEEEEeCC------CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC---eEEEEECC-ceeE
Q 004329 78 EE-FPEGGLVSGGMD------TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS---TLKRWRKG-KLVE 144 (760)
Q Consensus 78 ~~-~~~~~l~sgs~d------g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg---~v~vwd~~-~~~~ 144 (760)
.. .....++.++.+ +.|++||+. +.....+.+|...+.+++|+ ++.+++++.++ .|++||.. ....
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 00 001235555554 799999997 45567778899999999998 55699999885 99999975 3334
Q ss_pred EeecCCcCeEEEEEeCCCc-EE-EEECCCc--EEEEeCCC-ceEEeecCCCceEEEEEeCCCe-EEEEeC-CC--eEEEE
Q 004329 145 FWEAHNAPIQTVIRIPSGE-IV-SGSSDTT--IKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-IISASH-DC--TIRLW 215 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~-l~-tgs~dg~--i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l~s~s~-dg--~I~iw 215 (760)
.+..|...+.+++|+|+|+ ++ +++.++. |++||... ....+..|...+.+++|+|++. +++++. ++ .|.+|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 5677888999999999998 55 5666655 89999653 4466778889999999999887 777765 45 67788
Q ss_pred ecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCC---CcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCC
Q 004329 216 ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG 288 (760)
Q Consensus 216 d~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~D---g~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg 288 (760)
|+.+.....+..|...+.+++|+|+| +|++++.+ ..|++|| .+.. ..+.....+.+++|+|+|+ +++++.++
T Consensus 297 d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 297 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred ECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence 98776666777788899999999999 77776654 5899999 4444 3444334899999999999 77777766
Q ss_pred ---cEEEEeCCCCe
Q 004329 289 ---VTRIWTVHSDK 299 (760)
Q Consensus 289 ---~I~vw~~~~~~ 299 (760)
.|++|+++.+.
T Consensus 376 ~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 376 MGSVLNLVSTDGRF 389 (415)
T ss_dssp TEEEEEEEETTSCC
T ss_pred CccEEEEEECCCCc
Confidence 79999987544
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=4.7e-19 Score=200.35 Aligned_cols=312 Identities=12% Similarity=0.044 Sum_probs=224.8
Q ss_pred EEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC--CCC
Q 004329 26 CVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL--GSG 102 (760)
Q Consensus 26 ~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~--~~~ 102 (760)
.++|++. +++++.|++|++||..+++ ....+..+.. +.+++|+|+++ ++++++.|+.|++||+ .++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-----~~~~i~~g~~-~~~v~~spdg~-----~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK-----IVKVIDTGYA-VHISRMSASGR-----YLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC-----EEEEEECSTT-EEEEEECTTSC-----EEEEEETTSEEEEEETTSSSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce-----EEEEEecCcc-cceEEECCCCC-----EEEEECCCCeEEEEECcCCCC
Confidence 3788888 8899999999999998776 4556653333 88999999998 6999999999999999 888
Q ss_pred ceEEEEeCCCccEEEEEecC------CeEEEEE-CCCeEEEEECC--ceeEEeec----------C-CcCeEEEEEeCCC
Q 004329 103 EKVQTLQGHKLQVTGVTLDN------EDIVSSS-VDSTLKRWRKG--KLVEFWEA----------H-NAPIQTVIRIPSG 162 (760)
Q Consensus 103 ~~~~~l~~h~~~V~~l~~~~------~~l~sgs-~dg~v~vwd~~--~~~~~~~~----------~-~~~v~~v~~~~~~ 162 (760)
+++.++.. ...+..++|+. +++++++ .+++|.+||.. +++..+.. | ...+.++.+++++
T Consensus 213 ~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 213 TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 88888884 45678888863 4577776 58999999874 55665554 2 2368899999976
Q ss_pred c--EEEEECCCcEEEEeCCC--ceE-EeecCCCceEEEEEeCCCe-EEE-EeCCCeEEEEec-CCceEEEeec----CCC
Q 004329 163 E--IVSGSSDTTIKLWKGKK--CAQ-TFVGHTDTVRGLSVMPGVG-IIS-ASHDCTIRLWAL-TGQVLMEMVG----HTA 230 (760)
Q Consensus 163 ~--l~tgs~dg~i~iwd~~~--~~~-~~~~h~~~V~~l~~~~~~~-l~s-~s~dg~I~iwd~-~~~~~~~~~~----h~~ 230 (760)
. +++...++.|.+||... ... ....+...++++.|+|+++ +++ +..+++|.+||. +++++..+.. |..
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 6 56778899999999654 222 2224667788999999877 554 456899999997 4666666653 654
Q ss_pred cEEEEEEeCC-C-eEEEEe-CCCcEEEEe--C-------CceEEEEe-cCCcEEEEEEccCCc-EEEEE-------cCCc
Q 004329 231 IVYSIDSHAS-G-LIVSGS-EDRFAKIWK--D-------GVCVQSIE-HPGCVWDAKFLENGD-IVTAC-------SDGV 289 (760)
Q Consensus 231 ~v~~v~~~p~-~-~l~s~s-~Dg~I~iwd--~-------~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~-------~dg~ 289 (760)
....+ ++|+ + .++++. .|++|.+|| . .++++++. |.+.+..++++|+|+ +.+++ .+++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 44443 5777 4 666665 689999999 4 68889998 556889999999999 55554 2789
Q ss_pred EEEEeCCCCeee-chhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEee--C--CceEEEEEecc
Q 004329 290 TRIWTVHSDKVA-DSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE--G--DNGVAYSWDMK 364 (760)
Q Consensus 290 I~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~--~--~~~~~~~w~~~ 364 (760)
|.+||+.+++.. ..+.+...... .-.+........+++|....+.. + +++.+.+||.+
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADL-----------------GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCC-----------------CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEEECCCCCCCeEEeechhhccc-----------------CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 999999988754 22221111000 00122344555677888777663 2 35778889987
Q ss_pred ccc
Q 004329 365 EQK 367 (760)
Q Consensus 365 ~~~ 367 (760)
.++
T Consensus 514 t~~ 516 (543)
T 1nir_A 514 TLK 516 (543)
T ss_dssp TTE
T ss_pred Cce
Confidence 764
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.5e-19 Score=217.34 Aligned_cols=340 Identities=10% Similarity=0.049 Sum_probs=238.1
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC------CeEEEEeCCCCCCccceeeeEeeCCCCCe-----
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD------RTVRFWSLDPSDKRKYHSSKILLGHTSFV----- 68 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D------g~i~iWd~~~~~~~~~~~~~~~~~h~~~V----- 68 (760)
|+.|+....+ .+.+.+|...|.+++|+|||+ |++++.+ ..|++|++.++. ...+..|...+
T Consensus 35 l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~------~~~lt~~~~~~~~~~~ 107 (1045)
T 1k32_A 35 LWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE------IKRITYFSGKSTGRRM 107 (1045)
T ss_dssp EEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE------EEECCCCCEEEETTEE
T ss_pred EEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC------eEEcccCCCccccccc
Confidence 4678887665 467889999999999999999 8877643 379999987543 45667788888
Q ss_pred --EEEEEeCCCCCCCCcEEEEEeCC------CeEEEEECCCCceE-----------------------------------
Q 004329 69 --GPLAWISPNEEFPEGGLVSGGMD------TMVLVWDLGSGEKV----------------------------------- 105 (760)
Q Consensus 69 --~~l~~~~~~~~~~~~~l~sgs~d------g~I~vwd~~~~~~~----------------------------------- 105 (760)
.+++|+|++. ++++++.+ ..|+.|++.+++..
T Consensus 108 ~~~~~~~SpDg~-----ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~ 182 (1045)
T 1k32_A 108 FTDVAGFDPDGN-----LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGG 182 (1045)
T ss_dssp CSEEEEECTTCC-----EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCST
T ss_pred ccccccCCCCCE-----EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCC
Confidence 9999999997 47777754 46888887655422
Q ss_pred --------------EEEeCCCccEEEEEecCCe-EEEEECCCeEEEEEC---CceeEEeecCCcCeEEEEEeCCCc-EEE
Q 004329 106 --------------QTLQGHKLQVTGVTLDNED-IVSSSVDSTLKRWRK---GKLVEFWEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 106 --------------~~l~~h~~~V~~l~~~~~~-l~sgs~dg~v~vwd~---~~~~~~~~~~~~~v~~v~~~~~~~-l~t 166 (760)
..+.+|...+.++.|+++. +++++.|+++++|.. +.....+..|. .+....|+|+|+ ++.
T Consensus 183 ~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~ 261 (1045)
T 1k32_A 183 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILF 261 (1045)
T ss_dssp TCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEE
T ss_pred CcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEE
Confidence 1234567778888888555 566778899999953 34455555554 356679999998 555
Q ss_pred EECCCcEEEEeCCC-ceEEeec-----------CCCceEEEEEe-CCCe-EEEEeCCCeEEEEecCCceEEEeecCCC-c
Q 004329 167 GSSDTTIKLWKGKK-CAQTFVG-----------HTDTVRGLSVM-PGVG-IISASHDCTIRLWALTGQVLMEMVGHTA-I 231 (760)
Q Consensus 167 gs~dg~i~iwd~~~-~~~~~~~-----------h~~~V~~l~~~-~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~-~ 231 (760)
+ .++.|++||... .+..+.. |...+.+++|+ |++. +++++ ++.|.+|+..+.....+..|.. .
T Consensus 262 ~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 339 (1045)
T 1k32_A 262 S-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIR 339 (1045)
T ss_dssp E-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEE
T ss_pred E-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcce
Confidence 4 689999999632 2223332 34478999999 9887 66666 8999999987766667777887 8
Q ss_pred EEEEEEeCCC-eEEEEeCCCcEE-EEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhh
Q 004329 232 VYSIDSHASG-LIVSGSEDRFAK-IWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~Dg~I~-iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
+.+++|+ +| .++.++.++.+. +|+ .+.......|...+..++|+|||+ +++++.++.|++||+.+++.......
T Consensus 340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence 9999999 88 888888888888 888 333333334667899999999999 88889999999999999876554321
Q ss_pred -----hhhhhccc-ceEEecccc----------CceeeecCCCCceeeccCCCcceEEEEeeCCce
Q 004329 307 -----EAYASELS-QYKLCRKKV----------GGLKLEDLPGLEALQIPGTNAGQTKVVREGDNG 356 (760)
Q Consensus 307 -----~~~~~~~~-~~~~~~~~~----------g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~ 356 (760)
....++.. +..+..... +.+.+|++.+.+...+.++......+..+.++.
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCC
Confidence 11112222 222232222 378888887666544444444444444444433
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=6.5e-19 Score=215.88 Aligned_cols=290 Identities=8% Similarity=-0.017 Sum_probs=215.9
Q ss_pred CccccCCCceEeEEeccCCCCE-------EEEEEcCCCe-EEEEECC------CeEEEEeCCCCCCccc-----------
Q 004329 1 MMDIDFKEYQLSSELRGHEDDV-------RGICVCDNVG-IATSSRD------RTVRFWSLDPSDKRKY----------- 55 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V-------~~v~~~~~~~-l~tgs~D------g~i~iWd~~~~~~~~~----------- 55 (760)
|+.||..+.+ .+.|.+|...+ .+++|+|||+ +++++.+ ..|.+|++.++.....
T Consensus 82 i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~s 160 (1045)
T 1k32_A 82 LYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFA 160 (1045)
T ss_dssp EEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEE
T ss_pred EEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeC
Confidence 4678887766 57899999998 9999999998 6677654 3577777654321100
Q ss_pred ---------------------------------eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-
Q 004329 56 ---------------------------------HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS- 101 (760)
Q Consensus 56 ---------------------------------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~- 101 (760)
.....+.+|...+.++.|+++ . ++++++.|+.+.+|.+..
T Consensus 161 pG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~-----l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 161 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R-----IYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E-----EEEEECTTSSCEEEEEETT
T ss_pred CCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E-----EEEEEeccCceEEEEEeCC
Confidence 011234678888999999887 3 577888899999997653
Q ss_pred CceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEeec-----------CCcCeEEEEEe-CCCc-EE
Q 004329 102 GEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFWEA-----------HNAPIQTVIRI-PSGE-IV 165 (760)
Q Consensus 102 ~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~~~-----------~~~~v~~v~~~-~~~~-l~ 165 (760)
+.....+..|.. +...+|+ ++.++.+ .++.|++|+.. ..+..+.. |...+.++.|+ |+|+ ++
T Consensus 235 g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la 312 (1045)
T 1k32_A 235 GKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA 312 (1045)
T ss_dssp SCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred CCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence 344455555543 3444554 5567776 58999999874 22233333 33468899999 9998 55
Q ss_pred EEECCCcEEEEeCCC-ceEEeecCCC-ceEEEEEeCCCe-EEEEeCCCeEE-EEecCCceEEEeecCCCcEEEEEEeCCC
Q 004329 166 SGSSDTTIKLWKGKK-CAQTFVGHTD-TVRGLSVMPGVG-IISASHDCTIR-LWALTGQVLMEMVGHTAIVYSIDSHASG 241 (760)
Q Consensus 166 tgs~dg~i~iwd~~~-~~~~~~~h~~-~V~~l~~~~~~~-l~s~s~dg~I~-iwd~~~~~~~~~~~h~~~v~~v~~~p~~ 241 (760)
+++ ++.+++|+... ....+..|.. .+..++|+ ++. +++++.++.+. +||..+.....+.+|...+.+++|+|+|
T Consensus 313 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG 390 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG 390 (1045)
T ss_dssp EEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS
T ss_pred EEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC
Confidence 555 88999999653 3445667777 89999999 776 88888888888 9998777666677888899999999999
Q ss_pred -eEEEEeCCCcEEEEe--CCceEEEE-ecCCcEEEEEEccCCc-EEEEEcCC----------cEEEEeCCCCeee
Q 004329 242 -LIVSGSEDRFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDG----------VTRIWTVHSDKVA 301 (760)
Q Consensus 242 -~l~s~s~Dg~I~iwd--~~~~~~~~-~~~~~v~~v~~~~~g~-lvt~~~dg----------~I~vw~~~~~~~~ 301 (760)
.+++++.++.|++|| .++..... .|.+.+.+++|+|||+ +++++.++ .|++||+.+++..
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 999999999999999 66666666 5778899999999999 66666644 9999999988743
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=3.6e-18 Score=201.75 Aligned_cols=286 Identities=11% Similarity=0.053 Sum_probs=207.4
Q ss_pred CccccCCCceEeEEeccCCCC------------------------EEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccc
Q 004329 1 MMDIDFKEYQLSSELRGHEDD------------------------VRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKY 55 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~------------------------V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~ 55 (760)
|+.||..+.+....+..|... |.+++|+|||+ |++++. +.|++||+.++...
T Consensus 66 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-- 142 (741)
T 2ecf_A 66 LWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-- 142 (741)
T ss_dssp EEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--
T ss_pred EEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--
Confidence 467888888887777765443 88999999999 787776 99999999866100
Q ss_pred eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCcc----------------EEEEE
Q 004329 56 HSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQ----------------VTGVT 119 (760)
Q Consensus 56 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~----------------V~~l~ 119 (760)
....+..|...+.+++|+|+++ .|+.++ ++.|++||+.+++.......+... +.+++
T Consensus 143 -~~~~l~~~~~~~~~~~~SPDG~-----~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 215 (741)
T 2ecf_A 143 -AVRQLTHGEGFATDAKLSPKGG-----FVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYW 215 (741)
T ss_dssp -SCCBCCCSSSCEEEEEECTTSS-----EEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred -eEEEcccCCcccccccCCCCCC-----EEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceE
Confidence 1234556788899999999998 466666 569999999988776555544432 36788
Q ss_pred ec--CCeEEEEECCC---------------------------------eEEEEECCc---eeEEee--cCCcCeEEEEEe
Q 004329 120 LD--NEDIVSSSVDS---------------------------------TLKRWRKGK---LVEFWE--AHNAPIQTVIRI 159 (760)
Q Consensus 120 ~~--~~~l~sgs~dg---------------------------------~v~vwd~~~---~~~~~~--~~~~~v~~v~~~ 159 (760)
|+ ++.|++++.|+ .|++||... ...... .|...+..++|
T Consensus 216 ~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (741)
T 2ecf_A 216 WAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW- 294 (741)
T ss_dssp ECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-
T ss_pred ECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-
Confidence 87 55688887765 788888643 222222 47788999999
Q ss_pred CCCc-EEEEEC-----CCcEEEEeCCC--ceEEeecCCC----ceEEEEEeCCCe-EEEEeCCCeEEEEec--CCceEEE
Q 004329 160 PSGE-IVSGSS-----DTTIKLWKGKK--CAQTFVGHTD----TVRGLSVMPGVG-IISASHDCTIRLWAL--TGQVLME 224 (760)
Q Consensus 160 ~~~~-l~tgs~-----dg~i~iwd~~~--~~~~~~~h~~----~V~~l~~~~~~~-l~s~s~dg~I~iwd~--~~~~~~~ 224 (760)
|+|+ +++++. +..|++||... ....+..+.. .+.+++|+|++. +++++.||.+++|.+ ++. ...
T Consensus 295 pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 295 RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 9998 554432 56799999553 3444444443 456899999887 677888887777764 566 777
Q ss_pred eecCCCcEEEE-EEeCCC-eE-EEEeCCC--cEEEEe---CCceEEEEecCCcEEEEEEccCCc-EEEEEcC----CcEE
Q 004329 225 MVGHTAIVYSI-DSHASG-LI-VSGSEDR--FAKIWK---DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD----GVTR 291 (760)
Q Consensus 225 ~~~h~~~v~~v-~~~p~~-~l-~s~s~Dg--~I~iwd---~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~d----g~I~ 291 (760)
+..|...+.++ .|+|++ .+ ++++.++ .+++|+ .+.....+.....+.+++|+|||+ ++...++ +.+.
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~ 453 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIE 453 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEE
Confidence 88888889887 599999 55 5555565 899998 456566776667889999999999 5444332 5688
Q ss_pred EEeCCCC
Q 004329 292 IWTVHSD 298 (760)
Q Consensus 292 vw~~~~~ 298 (760)
+|+...+
T Consensus 454 l~~~~~~ 460 (741)
T 2ecf_A 454 LFRANGE 460 (741)
T ss_dssp EEETTSC
T ss_pred EEEcCCC
Confidence 8887544
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=2.6e-17 Score=173.86 Aligned_cols=262 Identities=13% Similarity=0.117 Sum_probs=182.3
Q ss_pred EEcCCC-e-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE-eCCCeEEEEECCCC
Q 004329 26 CVCDNV-G-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG-GMDTMVLVWDLGSG 102 (760)
Q Consensus 26 ~~~~~~-~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg-s~dg~I~vwd~~~~ 102 (760)
.|.+++ . +++++.++.|++||..+++ ....+..+...+ +++|+|++. +++++ ..++.|.+||+.++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~-~~~~s~dg~-----~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE-----ILNQITLGYDFV-DTAITSDCS-----NVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC-----EEEEEECCCCEE-EEEECSSSC-----EEEEEESTTCEEEEEECSSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc-----eeeeEEccCCcc-eEEEcCCCC-----EEEEEeCCCCeEEEEECCCC
Confidence 344443 4 8888999999999998776 344444555666 999999987 35544 44899999999999
Q ss_pred ce-EEEEeCCCccEEEEEec--CCeEEEEECCC---eEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EE-EEECCCc
Q 004329 103 EK-VQTLQGHKLQVTGVTLD--NEDIVSSSVDS---TLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IV-SGSSDTT 172 (760)
Q Consensus 103 ~~-~~~l~~h~~~V~~l~~~--~~~l~sgs~dg---~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~-tgs~dg~ 172 (760)
+. ...+..+..+..+++++ +++++++..++ .|.+||.. +.+..+.. .....+++|+|+|+ ++ ++..++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTT
T ss_pred ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCc
Confidence 87 77777776666658887 55577555553 89999975 44444443 34568999999987 54 5566688
Q ss_pred -EEEEeCCC--ce----EEeecCCCceEEEEEeCCCe-E-EEEeCCCeEEEEecC-Cce---EEEeecCCCcEEEEEEeC
Q 004329 173 -IKLWKGKK--CA----QTFVGHTDTVRGLSVMPGVG-I-ISASHDCTIRLWALT-GQV---LMEMVGHTAIVYSIDSHA 239 (760)
Q Consensus 173 -i~iwd~~~--~~----~~~~~h~~~V~~l~~~~~~~-l-~s~s~dg~I~iwd~~-~~~---~~~~~~h~~~v~~v~~~p 239 (760)
+.+|+... .. .....+...+..++|+|++. + +++..++.|++||+. ++. +..+. +...+.+++|+|
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~sp 230 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSR 230 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECT
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECC
Confidence 99998543 11 12223445689999999886 4 455568999999975 454 55554 346778999999
Q ss_pred CC-eEEEE-eCCCcEEEEe--CCce--EEEEec-----CC---cEEEEEEccCCc-EEEEE-cCCcEEEEeCCCCee
Q 004329 240 SG-LIVSG-SEDRFAKIWK--DGVC--VQSIEH-----PG---CVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKV 300 (760)
Q Consensus 240 ~~-~l~s~-s~Dg~I~iwd--~~~~--~~~~~~-----~~---~v~~v~~~~~g~-lvt~~-~dg~I~vw~~~~~~~ 300 (760)
+| +++.+ ..++.|.+|| .++. +..+.. +. ....++|+|+|+ +++++ .++.|++|++.....
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 99 55544 4678899999 4444 333331 22 235589999999 54444 467999999987654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=5.3e-18 Score=199.11 Aligned_cols=284 Identities=7% Similarity=0.046 Sum_probs=199.8
Q ss_pred cccCCCceEe-EEeccCC-----------------CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC
Q 004329 3 DIDFKEYQLS-SELRGHE-----------------DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64 (760)
Q Consensus 3 ~~d~~~~~l~-~~l~gH~-----------------~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h 64 (760)
.||..+.+.. ..+..|. ..|.+++|+|++.++.+ .|+.|++||+.+++ ...+..+
T Consensus 47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~------~~~l~~~ 119 (706)
T 2z3z_A 47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARK------VTYLFDT 119 (706)
T ss_dssp EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTTE------EEEEECC
T ss_pred EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCCc------eEEccCC
Confidence 5777777663 4444443 56999999999555555 46999999998653 2344556
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-----CceEEEEeCCCcc--------------EEEEEec--CC
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-----GEKVQTLQGHKLQ--------------VTGVTLD--NE 123 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-----~~~~~~l~~h~~~--------------V~~l~~~--~~ 123 (760)
...+.+++|+|+++ .+++ +.++.|++||+.+ ++.......+... +.++.|+ ++
T Consensus 120 ~~~~~~~~~SpdG~-----~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 120 NEETASLDFSPVGD-----RVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp TTCCTTCEECTTSS-----EEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred cccccCCcCCCCCC-----EEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 77889999999998 4666 4789999999998 7766554444443 3788887 55
Q ss_pred eEEEEE---------------------------------CCCeEEEEECCcee-EEee---cCCcCeEEEEEeCCCc-EE
Q 004329 124 DIVSSS---------------------------------VDSTLKRWRKGKLV-EFWE---AHNAPIQTVIRIPSGE-IV 165 (760)
Q Consensus 124 ~l~sgs---------------------------------~dg~v~vwd~~~~~-~~~~---~~~~~v~~v~~~~~~~-l~ 165 (760)
+|++++ .+..|++||..... ..+. .|...+.++.|+|+|+ ++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 688887 44679999975322 2222 4667799999999998 66
Q ss_pred EEECCC-----cEEEEeCCCc--eEEee--cCCC---ceEEEEEeC--CCe-EEEEeCCCeEEEEec--CCceEEEeecC
Q 004329 166 SGSSDT-----TIKLWKGKKC--AQTFV--GHTD---TVRGLSVMP--GVG-IISASHDCTIRLWAL--TGQVLMEMVGH 228 (760)
Q Consensus 166 tgs~dg-----~i~iwd~~~~--~~~~~--~h~~---~V~~l~~~~--~~~-l~s~s~dg~I~iwd~--~~~~~~~~~~h 228 (760)
+++.++ .|++||.... ...+. .+.. .+.+++|+| ++. +++++.|+.+++|++ ++..+..+..|
T Consensus 274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 766665 8999996543 23332 2222 346789999 887 677788999999875 57778888888
Q ss_pred CCcEEE-EEEeCCC-eEE-EEeCCC----cEEEEe-CCceEEEEecCCcEEEEEEccCCc-EEEEEcC----CcEEEEeC
Q 004329 229 TAIVYS-IDSHASG-LIV-SGSEDR----FAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD----GVTRIWTV 295 (760)
Q Consensus 229 ~~~v~~-v~~~p~~-~l~-s~s~Dg----~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~d----g~I~vw~~ 295 (760)
...+.+ ++|+|++ .++ +++.++ .|..|| .+.....+.+...+.+++|+|||+ ++.++++ +.|++||+
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 888877 7999999 554 455554 566666 333355666777899999999999 5555443 56999999
Q ss_pred CCCe
Q 004329 296 HSDK 299 (760)
Q Consensus 296 ~~~~ 299 (760)
.+++
T Consensus 434 ~~~~ 437 (706)
T 2z3z_A 434 GKGS 437 (706)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 8876
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.80 E-value=7.1e-18 Score=199.19 Aligned_cols=265 Identities=10% Similarity=0.049 Sum_probs=190.5
Q ss_pred CCCEEEEEEcCCCe-EEEEEC-CC-----eEEEEeCCCCCCccceeeeEeeCCC------------------------CC
Q 004329 19 EDDVRGICVCDNVG-IATSSR-DR-----TVRFWSLDPSDKRKYHSSKILLGHT------------------------SF 67 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~-Dg-----~i~iWd~~~~~~~~~~~~~~~~~h~------------------------~~ 67 (760)
...|.+++|+|||+ |++++. |+ .|++||+.+++ ....+..+. ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-----TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-----EEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-----eeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 45799999999999 999998 88 99999998765 222333322 23
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc--eEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc--
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE--KVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK-- 141 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~-- 141 (760)
|.+++|+|+++ +|++++. +.|++||+.++. ....+..|...+.+++|+ ++.++.++ ++.|++||...
T Consensus 111 v~~~~~SpDg~-----~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQ-----RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSS-----EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cceeEECCCCC-----EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 78999999998 5777776 999999998873 445577788889999998 44577666 56999999752
Q ss_pred eeEEeecCCcC----------------eEEEEEeCCCc-EEEEECCC---------------------------------
Q 004329 142 LVEFWEAHNAP----------------IQTVIRIPSGE-IVSGSSDT--------------------------------- 171 (760)
Q Consensus 142 ~~~~~~~~~~~----------------v~~v~~~~~~~-l~tgs~dg--------------------------------- 171 (760)
.......+... +.++.|+|||+ +++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 22222233322 47799999998 77776655
Q ss_pred cEEEEeCCC---ceEEee--cCCCceEEEEEeCCCe-EEEEeC-----CCeEEEEecC-CceEEEeecCCC----cEEEE
Q 004329 172 TIKLWKGKK---CAQTFV--GHTDTVRGLSVMPGVG-IISASH-----DCTIRLWALT-GQVLMEMVGHTA----IVYSI 235 (760)
Q Consensus 172 ~i~iwd~~~---~~~~~~--~h~~~V~~l~~~~~~~-l~s~s~-----dg~I~iwd~~-~~~~~~~~~h~~----~v~~v 235 (760)
.|++||... ...... .|...+.+++| |++. +++++. +..|++||+. ++....+..+.. .+.++
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 788888543 222222 47788999999 9776 665543 5789999975 444444444433 45688
Q ss_pred EEeCCC-eEEEEeCCCcEEEEe---CCceEEEEe-cCCcEEEE-EEccCCc-EEE-EEcCC--cEEEEeCCC
Q 004329 236 DSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA-KFLENGD-IVT-ACSDG--VTRIWTVHS 297 (760)
Q Consensus 236 ~~~p~~-~l~s~s~Dg~I~iwd---~~~~~~~~~-~~~~v~~v-~~~~~g~-lvt-~~~dg--~I~vw~~~~ 297 (760)
+|+|+| ++++++.||.++||. .+. ...+. +...+.++ .|+|+|+ ++. ++.++ .+++|+++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 999999 888999999888886 444 55554 55678887 5999998 544 44455 899999864
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=9.9e-18 Score=173.07 Aligned_cols=241 Identities=11% Similarity=0.132 Sum_probs=180.2
Q ss_pred EEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-CceEEEEeCC-
Q 004329 34 ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-GEKVQTLQGH- 111 (760)
Q Consensus 34 ~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~h- 111 (760)
.+++.|++|++||+.+++ ...+..|...|.+++|+|++. ++++++ ++.|++||+.+ ++.......|
T Consensus 16 ~~~~~~~~i~~~d~~~~~------~~~~~~~~~~v~~~~~spdg~-----~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRK------MRVVWQTPELFEAPNWSPDGK-----YLLLNS-EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp --CCCCEEEEEEETTTTE------EEEEEEESSCCEEEEECTTSS-----EEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred CCCCcceeEEEEeCCCCc------eeeeccCCcceEeeEECCCCC-----EEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence 345678999999998654 234556889999999999998 566665 88999999999 8777666666
Q ss_pred CccEEEEEec--CCeEEEEE--CCCeEEEE--ECC-ceeEEeecCCcCeEEEEEeCCCc-EE-EEECCCcEEEEe--CC-
Q 004329 112 KLQVTGVTLD--NEDIVSSS--VDSTLKRW--RKG-KLVEFWEAHNAPIQTVIRIPSGE-IV-SGSSDTTIKLWK--GK- 179 (760)
Q Consensus 112 ~~~V~~l~~~--~~~l~sgs--~dg~v~vw--d~~-~~~~~~~~~~~~v~~v~~~~~~~-l~-tgs~dg~i~iwd--~~- 179 (760)
...+.+++|+ +..+++++ .++..++| +.. .....+..+ ..+..+.|+|+++ ++ +++.++.+++|+ ..
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence 3678888897 55688888 33455555 543 333444333 3488899999988 44 788899999997 32
Q ss_pred CceEEeecCCCceEEEEEeCCCe-EEEEe-CCCeEEEEec--CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCC-----
Q 004329 180 KCAQTFVGHTDTVRGLSVMPGVG-IISAS-HDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----- 249 (760)
Q Consensus 180 ~~~~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg~I~iwd~--~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~D----- 249 (760)
.....+..|...+.+++|+|++. ++.++ .++.+++|++ .+.....+..|...+.++.|+|++ +|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 34556677888999999999876 55555 5899999985 567778888888899999999999 77777665
Q ss_pred ------CcEEEEe--CCce--EEEE-ecCCcEEEEEEccCCc-EEEEEcC
Q 004329 250 ------RFAKIWK--DGVC--VQSI-EHPGCVWDAKFLENGD-IVTACSD 287 (760)
Q Consensus 250 ------g~I~iwd--~~~~--~~~~-~~~~~v~~v~~~~~g~-lvt~~~d 287 (760)
+.|++|| .++. +..+ .|...+.+++|+|+|+ +++++.+
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 5699999 3333 2222 4777999999999999 6666654
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=2.2e-16 Score=168.08 Aligned_cols=259 Identities=8% Similarity=0.021 Sum_probs=191.9
Q ss_pred CCCCEEEEEEcCCCe-EEEEEC-------CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 18 HEDDVRGICVCDNVG-IATSSR-------DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~-------Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
+...+..++|+|++. +++++. ++.|.+||..+++ ....+.. ...+.+++|+|++.. +++++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-----~~~~~~~-~~~~~~~~~s~dg~~----l~v~~~ 108 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-----VTQAIHN-DLKPFGATINNTTQT----LWFGNT 108 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-----EEEEEEE-SSCCCSEEEETTTTE----EEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-----EEEEEec-CCCcceEEECCCCCE----EEEEec
Confidence 456788999999987 666663 5789999998765 3333332 345778999999873 355666
Q ss_pred CCCeEEEEECCCCceEEEEeCCCcc---------EEEEEec--CCeEEEEE--CCCeEEEEECC--ceeEEeecCCcCeE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHKLQ---------VTGVTLD--NEDIVSSS--VDSTLKRWRKG--KLVEFWEAHNAPIQ 154 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~~~---------V~~l~~~--~~~l~sgs--~dg~v~vwd~~--~~~~~~~~~~~~v~ 154 (760)
.++.|.+||..+++.+..+..+... +.++.++ ++.+++++ .++.|.+||.. +....+..+...+.
T Consensus 109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST 188 (353)
T ss_dssp TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence 6899999999999988888765422 6788886 55666665 48899999975 45555554566688
Q ss_pred EEEEeCCCc-EEEEECCCcEEEEeCCCc--eEEeec----CCCceEEEEEeCCCe-EEEEe-CCCeEEEEec-CCceEEE
Q 004329 155 TVIRIPSGE-IVSGSSDTTIKLWKGKKC--AQTFVG----HTDTVRGLSVMPGVG-IISAS-HDCTIRLWAL-TGQVLME 224 (760)
Q Consensus 155 ~v~~~~~~~-l~tgs~dg~i~iwd~~~~--~~~~~~----h~~~V~~l~~~~~~~-l~s~s-~dg~I~iwd~-~~~~~~~ 224 (760)
++.++|++. +++++.++.|.+||.... ...+.. +...+.+++++|++. +++++ .++.|.+||. +++.+..
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 899999987 778888999999996543 333332 456688999999766 55444 5599999997 4566666
Q ss_pred eecCCCcEEEEEEeCCC-eE-EEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCC
Q 004329 225 MVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG 288 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~-~l-~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg 288 (760)
+..+.. .+++|+|++ .+ ++...++.|.+|| .++.+..+.....+++++|+|+|+ ++++..++
T Consensus 269 ~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 269 VAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 554332 578999998 44 4555799999999 677888888878899999999998 66655553
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=9.4e-17 Score=169.98 Aligned_cols=257 Identities=11% Similarity=0.135 Sum_probs=177.3
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC-CeEEEEECC--CCc--eEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD-TMVLVWDLG--SGE--KVQT 107 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d-g~I~vwd~~--~~~--~~~~ 107 (760)
+++++.|+.|++|+++... ...... ...|...+.+++|+|++. ++++++.+ +.|.+|++. +++ .+..
T Consensus 8 ~~~~~~~~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~spdg~-----~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEG--ALTLTQ-VVDVPGQVQPMVVSPDKR-----YLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEGGGTEEEEEEECTTS--CEEEEE-EEECSSCCCCEEECTTSS-----EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCC--cEEEee-eEecCCCCceEEECCCCC-----EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 5555789999999996322 122222 234777899999999987 57777776 999999997 554 3445
Q ss_pred EeCCCccEEEEEec--CCeEEEEE-CCCeEEEEEC---C--ceeEEeecCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEe
Q 004329 108 LQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRK---G--KLVEFWEAHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWK 177 (760)
Q Consensus 108 l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~---~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd 177 (760)
+..+. .+.+++|+ ++.+++++ .++.|.+||. . .....+. ....+.+++|+|++. +++++ .++.|++||
T Consensus 80 ~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 80 SALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp EECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred cccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 55444 77888887 44566665 4889999987 2 2223333 334588899999987 66666 899999999
Q ss_pred CCC-c-eE-----Eeec-CCCceEEEEEeCCCe-EEE-EeCCCeEEEEecCC---ce--EEEee----cC--CCcEEEEE
Q 004329 178 GKK-C-AQ-----TFVG-HTDTVRGLSVMPGVG-IIS-ASHDCTIRLWALTG---QV--LMEMV----GH--TAIVYSID 236 (760)
Q Consensus 178 ~~~-~-~~-----~~~~-h~~~V~~l~~~~~~~-l~s-~s~dg~I~iwd~~~---~~--~~~~~----~h--~~~v~~v~ 236 (760)
... . .. .... ....++.++|+|++. +++ +..++.|++|++.. .. ..... ++ ...+.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 543 2 21 2222 345788999999876 544 45899999999842 21 22222 11 34677899
Q ss_pred EeCCC-eEE-EEeCCCcEEEEe-C--C---ceEEEEecCCcEEEEEEccCCc-EEEEE-cCCcEEEEeCC--CCe
Q 004329 237 SHASG-LIV-SGSEDRFAKIWK-D--G---VCVQSIEHPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVH--SDK 299 (760)
Q Consensus 237 ~~p~~-~l~-s~s~Dg~I~iwd-~--~---~~~~~~~~~~~v~~v~~~~~g~-lvt~~-~dg~I~vw~~~--~~~ 299 (760)
|+|++ .++ ++..++.|++|| . + +.+..+.....+.+++|+|+|+ +++++ .++.|.+|+++ +++
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 99999 555 566899999999 3 2 2344444445689999999999 66666 58999999654 554
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=5.2e-17 Score=171.49 Aligned_cols=258 Identities=8% Similarity=0.062 Sum_probs=185.1
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEee-CCCC-CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTS-FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG 110 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~-~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~ 110 (760)
+++++.+++|++||..+++ ....+. ++.. .+.+++|+|++.. ++++++.++.|.+||+.+++.+..+..
T Consensus 4 ~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~----l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMA-----VDKVITIADAGPTPMVPMVAPGGRI----AYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEETTTEEEEEETTTTE-----EEEEEECTTCTTCCCCEEECTTSSE----EEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCc-----EEEEEEcCCCCCCccceEEcCCCCE----EEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 8999999999999998654 333333 2222 4789999999863 356667789999999999988877663
Q ss_pred -C----CccEEEEEec--CCeEEEEE------------CCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCc-EEEEE
Q 004329 111 -H----KLQVTGVTLD--NEDIVSSS------------VDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGE-IVSGS 168 (760)
Q Consensus 111 -h----~~~V~~l~~~--~~~l~sgs------------~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~-l~tgs 168 (760)
+ ...+.+++++ ++.+++++ .++.|.+||.. +....+.. ...+.++.++|+++ ++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence 2 1256678887 45677775 57999999985 34444443 44577889999988 5555
Q ss_pred CCCcEEEEeCCCc--eEEeecCCCceEEEEEeCCCe-EEEEe-CCC-----------------------eEEEEecCCce
Q 004329 169 SDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGVG-IISAS-HDC-----------------------TIRLWALTGQV 221 (760)
Q Consensus 169 ~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg-----------------------~I~iwd~~~~~ 221 (760)
++.|++||.... ...+..+.. ...+.++|++. ++..+ .++ .|.+||.....
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 789999996543 333433320 11236677655 33322 233 46899975443
Q ss_pred E--EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329 222 L--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTV 295 (760)
Q Consensus 222 ~--~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~ 295 (760)
+ ..+..+...+.+++|+|++ +++++ ++.|++|| .++.+..+.....+.+++|+|+|+ +++++.++.|++||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 3 2344567788999999999 77766 79999999 667777787777889999999998 777788999999999
Q ss_pred CCCeeechhh
Q 004329 296 HSDKVADSLE 305 (760)
Q Consensus 296 ~~~~~~~~~~ 305 (760)
.+++.+..+.
T Consensus 309 ~~~~~~~~~~ 318 (337)
T 1pby_B 309 ETLEKKGQVD 318 (337)
T ss_dssp TTCCEEEEEE
T ss_pred cCCcEEEEEE
Confidence 9988766544
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.76 E-value=1.9e-16 Score=167.54 Aligned_cols=266 Identities=11% Similarity=0.082 Sum_probs=179.9
Q ss_pred ccccCC---CceEeEEeccCCCCEEEEEEcCCCe-EEEEECC-CeEEEEeCC--CCCCccceeeeEeeCCCCCeEEEEEe
Q 004329 2 MDIDFK---EYQLSSELRGHEDDVRGICVCDNVG-IATSSRD-RTVRFWSLD--PSDKRKYHSSKILLGHTSFVGPLAWI 74 (760)
Q Consensus 2 ~~~d~~---~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D-g~i~iWd~~--~~~~~~~~~~~~~~~h~~~V~~l~~~ 74 (760)
..||+. +.+....+ .|...+.+++|+|+++ |++++.+ +.|++|+++ ++. ......+..+. .+.+++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 18 HVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA---LTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp EEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---EEEEEEEECSS-CCSEEEEC
T ss_pred EEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc---eeeccccccCC-CCcEEEEc
Confidence 457663 23444443 5778899999999998 8888876 999999997 333 22333444444 78899999
Q ss_pred CCCCCCCCcEEEEEe-CCCeEEEEECC---CCceEEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEECCc---eeE
Q 004329 75 SPNEEFPEGGLVSGG-MDTMVLVWDLG---SGEKVQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKGK---LVE 144 (760)
Q Consensus 75 ~~~~~~~~~~l~sgs-~dg~I~vwd~~---~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~~---~~~ 144 (760)
|++. ++++++ .++.|.+||+. +.+....+..+ ..+.+++|+ ++.+++++ .++.|++||... ...
T Consensus 93 ~dg~-----~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 93 HQGQ-----FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp TTSS-----EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred CCCC-----EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 9987 455554 58999999994 33444555443 457788887 44677776 899999998642 221
Q ss_pred ----Eeec-CCcCeEEEEEeCCCc-EEE-EECCCcEEEEeCCC----c--eEEeec----C--CCceEEEEEeCCCe-EE
Q 004329 145 ----FWEA-HNAPIQTVIRIPSGE-IVS-GSSDTTIKLWKGKK----C--AQTFVG----H--TDTVRGLSVMPGVG-II 204 (760)
Q Consensus 145 ----~~~~-~~~~v~~v~~~~~~~-l~t-gs~dg~i~iwd~~~----~--~~~~~~----h--~~~V~~l~~~~~~~-l~ 204 (760)
.... ....+.+++|+|++. +++ +..++.|++|+... . ...... + ...+..++|+|++. ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 2222 345788999999998 544 44789999999642 1 122221 1 23567899999875 44
Q ss_pred -EEeCCCeEEEEecC--C---ceEEEeecCCCcEEEEEEeCCC-eEEEEe-CCCcEEEEe----CCc--eEEEEecCCcE
Q 004329 205 -SASHDCTIRLWALT--G---QVLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK----DGV--CVQSIEHPGCV 270 (760)
Q Consensus 205 -s~s~dg~I~iwd~~--~---~~~~~~~~h~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd----~~~--~~~~~~~~~~v 270 (760)
++..++.|++||+. + +.+..+..+.. +.+++|+|++ ++++++ .++.|.+|+ .+. .+..+......
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p 325 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGP 325 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred EEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCC
Confidence 55579999999986 2 23334444444 8899999999 677666 689999995 332 33344444566
Q ss_pred EEEEEccCC
Q 004329 271 WDAKFLENG 279 (760)
Q Consensus 271 ~~v~~~~~g 279 (760)
.+++|.++.
T Consensus 326 ~~i~~~~~~ 334 (343)
T 1ri6_A 326 MWVVVNAHE 334 (343)
T ss_dssp CEEEEEEEC
T ss_pred eeEEEEccc
Confidence 777777643
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=2.7e-17 Score=169.75 Aligned_cols=236 Identities=9% Similarity=0.036 Sum_probs=174.5
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCC-CCCccceeeeEeeCC-CCCeEEEEEeCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDP-SDKRKYHSSKILLGH-TSFVGPLAWISPN 77 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~-~~~~~~~~~~~~~~h-~~~V~~l~~~~~~ 77 (760)
|+.||+.+.+.. .+..|...|.+++|+|+++ |++++ ++.|++||+.+ ++ .......| ...+.+++|+|++
T Consensus 24 i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 24 IEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-----PEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp EEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-----CEECCCTTCCCBCSCCEECTTS
T ss_pred EEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-----ceEeccccccccccceEECCCC
Confidence 467888887765 5667999999999999999 66665 88999999986 54 22333444 4778999999999
Q ss_pred CCCCCcEEEEEe--CC--CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEE-EEECCCeEEEEEC--C-ceeEEee
Q 004329 78 EEFPEGGLVSGG--MD--TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIV-SSSVDSTLKRWRK--G-KLVEFWE 147 (760)
Q Consensus 78 ~~~~~~~l~sgs--~d--g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~-sgs~dg~v~vwd~--~-~~~~~~~ 147 (760)
. ++++++ .+ ..|..|+..+++ ...+..+. .+.+++|+ ++.++ +++.++.+++|+. . .....+.
T Consensus 97 ~-----~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 97 A-----LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp S-----EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred C-----EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 8 577777 33 455555655554 34444343 48888897 44455 7889999999973 2 4556667
Q ss_pred cCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEeC---CCceEEeecCCCceEEEEEeCCCe-EEEEeCC-----------C
Q 004329 148 AHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWKG---KKCAQTFVGHTDTVRGLSVMPGVG-IISASHD-----------C 210 (760)
Q Consensus 148 ~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd~---~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~d-----------g 210 (760)
.+...+.++.|+|++. ++.++ .++.+++|+. ......+..|...+.+++|+|++. +++++.+ +
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 7888999999999998 55555 5899999973 345667777888899999999876 6676665 5
Q ss_pred eEEEEecCCce---EEEeecCCCcEEEEEEeCCC-eEEEEeCCC
Q 004329 211 TIRLWALTGQV---LMEMVGHTAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 211 ~I~iwd~~~~~---~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
.|++||+.+.. +..+.+|...+.+++|+|++ .|++++.+.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 69999986543 34445788899999999999 677666543
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.75 E-value=1.4e-16 Score=187.00 Aligned_cols=275 Identities=9% Similarity=0.035 Sum_probs=178.0
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC-----------------CCCeE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-----------------TSFVG 69 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-----------------~~~V~ 69 (760)
+..++...+..+. +..+.|. ++.+++++.|+ | +||+.+++.. ...+..| ...|.
T Consensus 15 ~~~~~~~~~~~~~--~~~~~w~-g~~~~~~~~~~-i-~~d~~tg~~~----~~~l~~~~~~~~~l~~~~~~~~~~~~~v~ 85 (706)
T 2z3z_A 15 PGGKEFYNFYPEY--VVGLQWM-GDNYVFIEGDD-L-VFNKANGKSA----QTTRFSAADLNALMPEGCKFQTTDAFPSF 85 (706)
T ss_dssp ---------------CTTCEEE-TTEEEEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCE
T ss_pred CCccccccccccc--CCCCcCc-CCeEEEEeCCc-E-EEECCCCcEe----eEEeechhHhhhhccchhccccccccCce
Confidence 3344455555443 4556777 55688888888 8 9999877630 0112222 15699
Q ss_pred EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc------
Q 004329 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK------ 141 (760)
Q Consensus 70 ~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~------ 141 (760)
+++|+|+ . .++.+ .++.|++||+.+++... +..+...+.+++|+ ++.+++ +.|+.|++|+...
T Consensus 86 ~~~~spd-~-----~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 86 RTLDAGR-G-----LVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp EEEETTT-T-----EEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCC
T ss_pred eEEECCC-C-----eEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCC
Confidence 9999999 5 24444 46999999998886644 44566778888887 445666 5789999998643
Q ss_pred -eeEEeecCCcC--------------eEEEEEeCCCc-EEEEE---------------------------------CCCc
Q 004329 142 -LVEFWEAHNAP--------------IQTVIRIPSGE-IVSGS---------------------------------SDTT 172 (760)
Q Consensus 142 -~~~~~~~~~~~--------------v~~v~~~~~~~-l~tgs---------------------------------~dg~ 172 (760)
.......+... +.++.|+|+|+ +++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 23222333332 47899999998 66666 4467
Q ss_pred EEEEeCCCceE-Eee---cCCCceEEEEEeCCCe-EEEEeCCC-----eEEEEecCCc-eEEEee--cCCC---cEEEEE
Q 004329 173 IKLWKGKKCAQ-TFV---GHTDTVRGLSVMPGVG-IISASHDC-----TIRLWALTGQ-VLMEMV--GHTA---IVYSID 236 (760)
Q Consensus 173 i~iwd~~~~~~-~~~---~h~~~V~~l~~~~~~~-l~s~s~dg-----~I~iwd~~~~-~~~~~~--~h~~---~v~~v~ 236 (760)
|++||...... .+. .|...+.+++|+|++. +++++.++ .|++||.... ....+. .+.. .+.++.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 99999765332 222 4667899999999887 77777775 8999998654 544443 2222 246789
Q ss_pred EeC--CC-eEEEEeCCCcEEEEe---CCceEEEEe-cCCcEEE-EEEccCCc-EEEEEc-CC----cEEEEeCCCCe
Q 004329 237 SHA--SG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWD-AKFLENGD-IVTACS-DG----VTRIWTVHSDK 299 (760)
Q Consensus 237 ~~p--~~-~l~s~s~Dg~I~iwd---~~~~~~~~~-~~~~v~~-v~~~~~g~-lvt~~~-dg----~I~vw~~~~~~ 299 (760)
|+| +| ++++++.|+.+++|+ .+.....+. +...+.+ ++|+|+|+ ++.++. ++ .|..|+..+++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 99 888899999999997 556666665 5556776 79999998 555554 44 56666766654
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=3.4e-16 Score=166.20 Aligned_cols=260 Identities=7% Similarity=0.012 Sum_probs=180.4
Q ss_pred EEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCC-CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 24 GICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT-SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 24 ~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
++++++++. +++++.+++|++||+.+++ ....+..+. ..+..++|+|++.. +++++..++.|.+||+.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~----~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRT----AYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-----EEEEEECSSCCSSCEEEECTTSSE----EEEEETTTTEEEEEETTT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-----EEEEEecCCCCCCceeEECCCCCE----EEEEeCCCCcEEEEeCCC
Confidence 456778888 8999999999999998664 333444332 25789999999863 245666789999999999
Q ss_pred CceEEEEeCCC------ccEEEEEec--CCeEEEEECC------------CeEEEEECCc-----eeEEeecCCcCeEEE
Q 004329 102 GEKVQTLQGHK------LQVTGVTLD--NEDIVSSSVD------------STLKRWRKGK-----LVEFWEAHNAPIQTV 156 (760)
Q Consensus 102 ~~~~~~l~~h~------~~V~~l~~~--~~~l~sgs~d------------g~v~vwd~~~-----~~~~~~~~~~~v~~v 156 (760)
++....+..+. ..+.+++|+ ++++++++.+ +.|.+||... .+..+. +...+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 98887776332 236677886 5568887765 8999999742 223333 33468889
Q ss_pred EEeCCCcEEEEECCCcEEEEeCCC--ceEEeecCC-C-----------------------ceEEEEEeCCCe--------
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHT-D-----------------------TVRGLSVMPGVG-------- 202 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~~--~~~~~~~h~-~-----------------------~V~~l~~~~~~~-------- 202 (760)
+++|++++++++ +.|++||... ....+..+. . ....+++++++.
T Consensus 154 ~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 154 RAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp EECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred eECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999966654 4499999653 333333221 0 234455554321
Q ss_pred ----EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeC-CC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEE
Q 004329 203 ----IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 274 (760)
Q Consensus 203 ----l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p-~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~ 274 (760)
+.....++.+++|+. ..+...+.+++++| ++ +++++ ++.|.+|| .++.+..+.....+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 301 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEF--------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVA 301 (349)
T ss_dssp EEEEEEEETTTCCEEEEEE--------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred ceeEEEEeccCCcEEeccc--------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceE
Confidence 112223344444443 23667889999999 98 66666 88999999 667777777777788999
Q ss_pred EccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 275 FLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 275 ~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|+|+|+ +++++.++.|++||..+++.+..+.
T Consensus 302 ~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp ECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999998 7778889999999999988766543
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=9.7e-17 Score=188.82 Aligned_cols=291 Identities=10% Similarity=0.024 Sum_probs=199.0
Q ss_pred CccccCCCceEeEEeccCCC---CEEEEEEcCCCe-EEEEECC---------CeEEEEeCCCCCCccceeeeEeeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHED---DVRGICVCDNVG-IATSSRD---------RTVRFWSLDPSDKRKYHSSKILLGHTSF 67 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~---~V~~v~~~~~~~-l~tgs~D---------g~i~iWd~~~~~~~~~~~~~~~~~h~~~ 67 (760)
|+.||..+.+....+.+|.. .|.+++|+|||+ |++++.+ +.+++||+.+++. .......+|...
T Consensus 39 i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~ 115 (723)
T 1xfd_A 39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---QSLDPPEVSNAK 115 (723)
T ss_dssp EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---EECCCTTCCSCC
T ss_pred EEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce---EeccCCcccccc
Confidence 46799999998888888876 499999999999 8888775 7888999987652 122223345566
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE------------------EEEEec--CCeEEE
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV------------------TGVTLD--NEDIVS 127 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V------------------~~l~~~--~~~l~s 127 (760)
+.+++|+|+++ .|+.++. +.|++||+.+++.......+...+ .+++|+ ++.|++
T Consensus 116 ~~~~~~SPdG~-----~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 116 LQYAGWGPKGQ-----QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CSBCCBCSSTT-----CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred ccccEECCCCC-----EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 88999999998 4777765 899999999988776666544433 788997 556888
Q ss_pred EECCC----------------------------------eEEEEECC--ceeEEeecC------CcCeEEEEEeCCCcEE
Q 004329 128 SSVDS----------------------------------TLKRWRKG--KLVEFWEAH------NAPIQTVIRIPSGEIV 165 (760)
Q Consensus 128 gs~dg----------------------------------~v~vwd~~--~~~~~~~~~------~~~v~~v~~~~~~~l~ 165 (760)
++.|+ .|++||.. +....+..+ ...+..+.|+|||+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l 269 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA 269 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEE
Confidence 77553 78999875 323455543 5678999999999844
Q ss_pred -EEEC----CCcEEEEeCCC--ceEEeec-CCCceE----EEEEeCCCe-EEE--EeCCC------eEEEEe-cCCce--
Q 004329 166 -SGSS----DTTIKLWKGKK--CAQTFVG-HTDTVR----GLSVMPGVG-IIS--ASHDC------TIRLWA-LTGQV-- 221 (760)
Q Consensus 166 -tgs~----dg~i~iwd~~~--~~~~~~~-h~~~V~----~l~~~~~~~-l~s--~s~dg------~I~iwd-~~~~~-- 221 (760)
+.+. +..|++||... ....+.. +...+. .++|+|++. ++. +..++ .|.+|| ..+..
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 4432 35799999543 3334333 344443 789999877 553 55677 577777 45544
Q ss_pred -EEEeecCCCcEEE-EEEeCCC-eEEEEeCC---CcEEEEe---CCc-eEEEEe----cCCcEEEEEEccCCc-EEEEEc
Q 004329 222 -LMEMVGHTAIVYS-IDSHASG-LIVSGSED---RFAKIWK---DGV-CVQSIE----HPGCVWDAKFLENGD-IVTACS 286 (760)
Q Consensus 222 -~~~~~~h~~~v~~-v~~~p~~-~l~s~s~D---g~I~iwd---~~~-~~~~~~----~~~~v~~v~~~~~g~-lvt~~~ 286 (760)
...+..+...+.. ++|+|+| .|+..+.+ +.+++|+ .+. ....+. |...+..++|+|+|+ ++..++
T Consensus 350 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 5555544444554 6999999 66555444 7899998 221 333343 456789999999999 444333
Q ss_pred -CC--cEEEEeCCCCee
Q 004329 287 -DG--VTRIWTVHSDKV 300 (760)
Q Consensus 287 -dg--~I~vw~~~~~~~ 300 (760)
.+ ...+++..++..
T Consensus 430 ~~~~p~~~~~~~~~~~~ 446 (723)
T 1xfd_A 430 GPGVPMVTVHNTTDKKK 446 (723)
T ss_dssp SSSSCCEEEEETTTCCE
T ss_pred CCCCCeEEEEECCCCCE
Confidence 22 334556555443
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=5e-17 Score=186.27 Aligned_cols=266 Identities=10% Similarity=0.047 Sum_probs=186.4
Q ss_pred EEecc-CCCCEEEEEEcCCCe-EEEEEC-CCeEEEEeCCCCCCccceeeeEeeCCC-CCeEEEEEeCCCCCCCCcEEEEE
Q 004329 13 SELRG-HEDDVRGICVCDNVG-IATSSR-DRTVRFWSLDPSDKRKYHSSKILLGHT-SFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 13 ~~l~g-H~~~V~~v~~~~~~~-l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
+.+.. +..+|.+++|+|||+ |++++. ||+++||+++++. ...+..|. ..+.+++|+|+ . +++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~------~~~lt~~~~~~~~~~~~spd-~-----~l~~~ 81 (582)
T 3o4h_A 14 RDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE------TVKLNREPINSVLDPHYGVG-R-----VILVR 81 (582)
T ss_dssp HHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE------EEECCSSCCSEECEECTTCS-E-----EEEEE
T ss_pred HHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCC------cEeeecccccccccccCCCC-e-----EEEEe
Confidence 34443 366899999999998 888877 9999999986443 23444454 68999999988 4 47777
Q ss_pred eC---CCeEEEEECCC---CceEEEEe-CCCccEEEEEecCCe-EEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEE
Q 004329 89 GM---DTMVLVWDLGS---GEKVQTLQ-GHKLQVTGVTLDNED-IVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 89 s~---dg~I~vwd~~~---~~~~~~l~-~h~~~V~~l~~~~~~-l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~ 158 (760)
+. +....+|.+.. +... .+. .+...+.+++++++. +++.+.++.+.+||.. +...... +.. .++.|
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~ 157 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVS 157 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEE
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEE
Confidence 65 45455554432 3322 332 223335566666543 4455555555699863 3333333 333 78999
Q ss_pred eCCCc-EEEEECC----CcEEEEeCC-CceEEeecCCCceEEEEEeCCCe-EEEEeCCC--eEEEEecCCceEEEeecCC
Q 004329 159 IPSGE-IVSGSSD----TTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGVG-IISASHDC--TIRLWALTGQVLMEMVGHT 229 (760)
Q Consensus 159 ~~~~~-l~tgs~d----g~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg--~I~iwd~~~~~~~~~~~h~ 229 (760)
+|||+ +++++.+ +.|++||.. ...+.+..|...+..++|+||++ ++++..++ .|++||+.+.....+.+|.
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 237 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPS 237 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCC
Confidence 99999 5556666 779999954 44557788999999999999887 77778888 8999998765444666777
Q ss_pred CcEEEEE--------EeCCC-eEEEEeCCCcEEEEeCCceEEEEecCCcEEEEEEccCCc-EEEEEcCC---cEEEEeCC
Q 004329 230 AIVYSID--------SHASG-LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG---VTRIWTVH 296 (760)
Q Consensus 230 ~~v~~v~--------~~p~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg---~I~vw~~~ 296 (760)
..+..+. |+|+| .+++++.|+++++|+.++... ...+.+.+++|+ +|+ +++++++. .+.+|+..
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 7777777 99999 889999999999999843332 345689999999 888 66666664 46666654
Q ss_pred C
Q 004329 297 S 297 (760)
Q Consensus 297 ~ 297 (760)
.
T Consensus 315 ~ 315 (582)
T 3o4h_A 315 E 315 (582)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=1.3e-15 Score=160.78 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=183.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEEC-CCeEEEEECC--ce-eEEeecCCcCeEEEE
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSV-DSTLKRWRKG--KL-VEFWEAHNAPIQTVI 157 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~v~vwd~~--~~-~~~~~~~~~~v~~v~ 157 (760)
.+++++.++.|.+||..+++....+..+...+ +++++ ++.+++++. ++.|.+||.. +. ...+..+..+..+++
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD 90 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence 47888899999999999999988887766667 89997 445665555 8999999874 44 556666666666699
Q ss_pred EeCCCc-EEEEECCC---cEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EE-EEeCCCe-EEEEecCC--ceE---E
Q 004329 158 RIPSGE-IVSGSSDT---TIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-II-SASHDCT-IRLWALTG--QVL---M 223 (760)
Q Consensus 158 ~~~~~~-l~tgs~dg---~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~-s~s~dg~-I~iwd~~~--~~~---~ 223 (760)
++|+++ ++++..++ .|++||... ....+. +.....+++|+|++. ++ +...++. |.+|++.. ... .
T Consensus 91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 999998 45433342 899999654 333443 345578999999875 44 4556688 99999753 121 2
Q ss_pred EeecCCCcEEEEEEeCCC-eE-EEEeCCCcEEEEe--CCce---EEEEecCCcEEEEEEccCCc-EEEEE-cCCcEEEEe
Q 004329 224 EMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVC---VQSIEHPGCVWDAKFLENGD-IVTAC-SDGVTRIWT 294 (760)
Q Consensus 224 ~~~~h~~~v~~v~~~p~~-~l-~s~s~Dg~I~iwd--~~~~---~~~~~~~~~v~~v~~~~~g~-lvt~~-~dg~I~vw~ 294 (760)
....+.....+++|+|+| ++ +++..++.|++|| .++. +..+.....+..++|+|+|+ +++++ .++.|.+||
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 222445668999999999 44 5555789999999 5666 77777777889999999999 54444 478899999
Q ss_pred CCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEEecccc
Q 004329 295 VHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQ 366 (760)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~ 366 (760)
..+++........ ..+.+...+......+..+++|...++.+.+.+.+.+|+....
T Consensus 250 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 250 QLSGTLSFVKSFG----------------HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TTTTEEEEEEEEE----------------CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCceeeecccc----------------cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9988763211000 0000000000000112346688888788888889999998764
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=7.1e-17 Score=190.01 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=181.0
Q ss_pred CEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC---CeEEEEEeCCCCCCCCcEEEEEeCC------
Q 004329 21 DVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS---FVGPLAWISPNEEFPEGGLVSGGMD------ 91 (760)
Q Consensus 21 ~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~l~sgs~d------ 91 (760)
.+.+++|+|||+++..+.||+|++||+.+++ ....+..|.. .|.+++|+|+++ +|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~-----~~~~~~~~~~~~~~v~~~~~SpDg~-----~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNT-----STVLIEGKKIESLRAIRYEISPDRE-----YALFSYNVEPIYQH 87 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCC-----CEEEECTTTTTTTTCSEEEECTTSS-----EEEEEESCCCCSSS
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCc-----EEEEeccccccccccceEEECCCCC-----EEEEEecCccceee
Confidence 4678899999994445889999999998775 3345555554 499999999998 57887764
Q ss_pred ---CeEEEEECCCCceEEEEe---CCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCe--------
Q 004329 92 ---TMVLVWDLGSGEKVQTLQ---GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPI-------- 153 (760)
Q Consensus 92 ---g~I~vwd~~~~~~~~~l~---~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v-------- 153 (760)
+.|++||+.+++. ..+. +|...+.+++|+ ++.++.++. +.|++||.. +.......+...+
T Consensus 88 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred cceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 7889999998876 3333 344558888887 556777776 799999864 4444444433333
Q ss_pred ----------EEEEEeCCCc-EEEEECCC----------------------------------cEEEEeCCCc--eEEee
Q 004329 154 ----------QTVIRIPSGE-IVSGSSDT----------------------------------TIKLWKGKKC--AQTFV 186 (760)
Q Consensus 154 ----------~~v~~~~~~~-l~tgs~dg----------------------------------~i~iwd~~~~--~~~~~ 186 (760)
.++.|+|||+ +++++.|+ .|++||.... ...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 7899999998 66665442 7888986543 34454
Q ss_pred cC------CCceEEEEEeCCCe-EEEEeC----CCeEEEEecCC-ceEEEeec-CCCcEE----EEEEeCCC-eEEE--E
Q 004329 187 GH------TDTVRGLSVMPGVG-IISASH----DCTIRLWALTG-QVLMEMVG-HTAIVY----SIDSHASG-LIVS--G 246 (760)
Q Consensus 187 ~h------~~~V~~l~~~~~~~-l~s~s~----dg~I~iwd~~~-~~~~~~~~-h~~~v~----~v~~~p~~-~l~s--~ 246 (760)
.+ ...+.+++|+|+++ +++.+. +..|++||+.+ +....+.. +...+. .++|+|+| .|+. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 43 56789999999887 444433 35789999754 44443333 334443 78999999 4443 5
Q ss_pred eCCC------cEEEEe--CCce---EEEEe-cCCcEEE-EEEccCCc-EEEEEcC---CcEEEEeCCCC
Q 004329 247 SEDR------FAKIWK--DGVC---VQSIE-HPGCVWD-AKFLENGD-IVTACSD---GVTRIWTVHSD 298 (760)
Q Consensus 247 s~Dg------~I~iwd--~~~~---~~~~~-~~~~v~~-v~~~~~g~-lvt~~~d---g~I~vw~~~~~ 298 (760)
..++ .|.+|| .+.. ...+. +...+.. ++|+|||+ ++..+.+ +.+++|+++.+
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5677 566676 3333 44444 2334554 68999998 5555554 78899988643
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=4.6e-15 Score=157.85 Aligned_cols=247 Identities=12% Similarity=0.131 Sum_probs=169.6
Q ss_pred ccccCCCceEeE-EeccCCCCEEEEEEcCCCeEEEEEC---CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 2 MDIDFKEYQLSS-ELRGHEDDVRGICVCDNVGIATSSR---DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 2 ~~~d~~~~~l~~-~l~gH~~~V~~v~~~~~~~l~tgs~---Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
+.||..+.++.. ....+...+..++|+|+++|++++. ++.|++|++.++. ......+..+...+..++|+|++
T Consensus 21 ~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~p~~~a~spdg 97 (347)
T 3hfq_A 21 GTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT---AHKLNTVVAPGTPPAYVAVDEAR 97 (347)
T ss_dssp EEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE---EEEEEEEEEESCCCSEEEEETTT
T ss_pred EEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc---EEEeeeeecCCCCCEEEEECCCC
Confidence 456666666544 3445667788999999999555554 6899999996543 23344445577788999999999
Q ss_pred CCCCCcEEEEEe-CCCeEEEEECC-CCc--eEEEEeC---------CCccEEEEEec--CCeEEEEECCCeEEEEECC--
Q 004329 78 EEFPEGGLVSGG-MDTMVLVWDLG-SGE--KVQTLQG---------HKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-- 140 (760)
Q Consensus 78 ~~~~~~~l~sgs-~dg~I~vwd~~-~~~--~~~~l~~---------h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-- 140 (760)
. ++++++ .++.|.+|++. ++. .+..+.. +...+.+++|+ ++.+++...++.|++|+..
T Consensus 98 ~-----~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 98 Q-----LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp T-----EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred C-----EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 8 567666 78999999995 332 3333322 12348889997 4445555568899999865
Q ss_pred -cee--EEeecC-CcCeEEEEEeCCCc-EE-EEECCCcEEEEeCCC--c----eEEeecCC------CceEEEEEeCCCe
Q 004329 141 -KLV--EFWEAH-NAPIQTVIRIPSGE-IV-SGSSDTTIKLWKGKK--C----AQTFVGHT------DTVRGLSVMPGVG 202 (760)
Q Consensus 141 -~~~--~~~~~~-~~~v~~v~~~~~~~-l~-tgs~dg~i~iwd~~~--~----~~~~~~h~------~~V~~l~~~~~~~ 202 (760)
... ..+..+ ...+..++|+|+|+ ++ ++..++.+++|+... . ...+.... ..+..++|+|+++
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 211 122222 33677899999998 44 456788999998442 1 12222222 4588999999886
Q ss_pred -E-EEEeCCCeEEEEecC--C--ceEEEeecCCCcEEEEEEeCCC-eEEEEeC-CCcEEEEe
Q 004329 203 -I-ISASHDCTIRLWALT--G--QVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK 256 (760)
Q Consensus 203 -l-~s~s~dg~I~iwd~~--~--~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~-Dg~I~iwd 256 (760)
+ ++...++.|.+|++. + ..+..+..+...+.+++|+|+| +|++++. ++.|.+|+
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 4 566678999999975 2 3445555666778999999999 6777665 58999995
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=5.2e-15 Score=157.43 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=170.5
Q ss_pred CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC---CCeEEEEECCCCc--eEEEEeCCC
Q 004329 38 RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM---DTMVLVWDLGSGE--KVQTLQGHK 112 (760)
Q Consensus 38 ~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~---dg~I~vwd~~~~~--~~~~l~~h~ 112 (760)
.++.|.+|+++... ...... ....+...+..++|+|++. +++++. ++.|++|++.+++ .+..+..+.
T Consensus 14 ~~~~i~v~~~d~~t-g~~~~~-~~~~~~~~p~~~a~spdg~------l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~ 85 (347)
T 3hfq_A 14 TSQGIYQGTLDTTA-KTLTND-GLLAATQNPTYLALSAKDC------LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG 85 (347)
T ss_dssp SCCEEEEEEEETTT-TEEEEE-EEEEECSCCCCEEECTTCE------EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES
T ss_pred CCCCEEEEEEcCCC-CeEEEe-eeeeccCCcceEEEccCCe------EEEEEecCCCceEEEEEecCCcEEEeeeeecCC
Confidence 35678888876322 112222 2334556778899999886 444433 6899999997775 344445567
Q ss_pred ccEEEEEec--CCeEEEEE-CCCeEEEEECC---ce--eEEeec---------CCcCeEEEEEeCCCcEE-EEECCCcEE
Q 004329 113 LQVTGVTLD--NEDIVSSS-VDSTLKRWRKG---KL--VEFWEA---------HNAPIQTVIRIPSGEIV-SGSSDTTIK 174 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~---~~--~~~~~~---------~~~~v~~v~~~~~~~l~-tgs~dg~i~ 174 (760)
..+..++++ ++.+++++ .++.+.+|+.. .. +..+.. +...+.+++++|+|+++ +...++.|+
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 778888887 55677777 78999999874 22 222221 12248889999999854 445678999
Q ss_pred EEeCC-C-ceE---Eeec-CCCceEEEEEeCCCe-EE-EEeCCCeEEEEecC---Cce--EEEeecCC------CcEEEE
Q 004329 175 LWKGK-K-CAQ---TFVG-HTDTVRGLSVMPGVG-II-SASHDCTIRLWALT---GQV--LMEMVGHT------AIVYSI 235 (760)
Q Consensus 175 iwd~~-~-~~~---~~~~-h~~~V~~l~~~~~~~-l~-s~s~dg~I~iwd~~---~~~--~~~~~~h~------~~v~~v 235 (760)
+|+.. . ... .+.. ....++.++|+|++. ++ ++..++.|.+|++. ++. +..+.... ..+..+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 99965 2 111 1222 233678899999887 44 45678999999975 332 22333322 458899
Q ss_pred EEeCCC-eE-EEEeCCCcEEEEe-C--C--ceEEEEe-cCCcEEEEEEccCCc-EEEEEc-CCcEEEEeC--CCCeee
Q 004329 236 DSHASG-LI-VSGSEDRFAKIWK-D--G--VCVQSIE-HPGCVWDAKFLENGD-IVTACS-DGVTRIWTV--HSDKVA 301 (760)
Q Consensus 236 ~~~p~~-~l-~s~s~Dg~I~iwd-~--~--~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~-dg~I~vw~~--~~~~~~ 301 (760)
+|+|+| ++ ++...++.|.+|+ . + ..+..+. +...+.+++|+|+|+ +++++. ++.|.+|++ .++++.
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999 55 6667799999999 2 2 3344444 345789999999999 666665 589999955 455543
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.69 E-value=1.4e-14 Score=154.15 Aligned_cols=235 Identities=9% Similarity=0.080 Sum_probs=171.3
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-E-EEEECCCeEEEEeCCCCCCccceeeeEeeCCCC---------CeE
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-I-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS---------FVG 69 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l-~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~---------~V~ 69 (760)
|+.||..+.+....+... ..+.+++|+++++ + +++..++.|.+||..+++ ....+..+.. .+.
T Consensus 71 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE-----VKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp EEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC-----EEEEEESCCCCCCSSCCCCEEE
T ss_pred EEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe-----eEEEEecCCCccccccCCCCCc
Confidence 467899999988888754 4478899999987 4 555668999999998765 3334443322 278
Q ss_pred EEEEeCCCCCCCCcEEEEEe--CCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--cee
Q 004329 70 PLAWISPNEEFPEGGLVSGG--MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLV 143 (760)
Q Consensus 70 ~l~~~~~~~~~~~~~l~sgs--~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~ 143 (760)
+++|+|++. .+++++ .++.|.+||..+++.+..+..+...+.+++++ ++.+++++.++.+.+||.. +..
T Consensus 145 ~~~~s~dg~-----~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 145 ELVADDATN-----TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL 219 (353)
T ss_dssp EEEEETTTT-----EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred eEEECCCCC-----EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence 999999987 355544 58899999999999988887666667778886 6679999999999999975 444
Q ss_pred EEeec----CCcCeEEEEEeCCCc-EEEEE-CCCcEEEEeCCC--ceEEeecCCCceEEEEEeCCCe-EE-EEeCCCeEE
Q 004329 144 EFWEA----HNAPIQTVIRIPSGE-IVSGS-SDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMPGVG-II-SASHDCTIR 213 (760)
Q Consensus 144 ~~~~~----~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~~~~-l~-s~s~dg~I~ 213 (760)
..+.. +...+..++++|++. +++++ .++.|.+||... ....+..+. ...++|+|++. ++ +...++.|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence 44443 455688899999987 55444 459999999654 334444332 35799999776 44 444799999
Q ss_pred EEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEEeCC
Q 004329 214 LWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSED 249 (760)
Q Consensus 214 iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~D 249 (760)
+||.. ++.+..+. ....+.+++|+|+| .++.+..+
T Consensus 298 ~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 298 VIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEcc
Confidence 99985 45555544 45578999999999 56555544
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=5.6e-14 Score=150.39 Aligned_cols=260 Identities=12% Similarity=0.099 Sum_probs=173.8
Q ss_pred EEEEE----CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC----CeEEEEECCC--C
Q 004329 33 IATSS----RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD----TMVLVWDLGS--G 102 (760)
Q Consensus 33 l~tgs----~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d----g~I~vwd~~~--~ 102 (760)
++.|+ .++.|.+|+++... ......... +...+..++|+|++. +|++++.+ +.|.+|++.. +
T Consensus 16 ~~vg~y~~~~~~~i~~~~~d~~~-g~~~~~~~~--~~~~p~~l~~spdg~-----~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 16 MLVGTYTSGNSKGIYTFRFNEET-GESLPLSDA--EVANPSYLIPSADGK-----FVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEECCSSSCCEEEEEEEETTT-CCEEEEEEE--ECSCCCSEEECTTSS-----EEEEEECCSSTTCEEEEEEEETTTT
T ss_pred EEEEeccCCCCCCEEEEEEeCCC-CCEEEeecc--cCCCCceEEECCCCC-----EEEEEEccCCCCCcEEEEEEeCCCC
Confidence 66664 45789999875321 112222233 677788899999987 57887775 8999998865 4
Q ss_pred c--eEEEEeCCCccEEEEEecCCeEEEEE-CCCeEEEEECC--cee----EEe--ec--------CCcCeEEEEEeCCCc
Q 004329 103 E--KVQTLQGHKLQVTGVTLDNEDIVSSS-VDSTLKRWRKG--KLV----EFW--EA--------HNAPIQTVIRIPSGE 163 (760)
Q Consensus 103 ~--~~~~l~~h~~~V~~l~~~~~~l~sgs-~dg~v~vwd~~--~~~----~~~--~~--------~~~~v~~v~~~~~~~ 163 (760)
+ .+.....+....+.++++++.+++++ .++.+.+|+.. ..+ ... .+ +...+.+++|+|+|+
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred cEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 3 33444556667888888766666666 68899999864 111 111 11 123457899999998
Q ss_pred -EEEEE-CCCcEEEEeCC--Cc------e-------EEeecCCCceEEEEEeCCCe-EEEEe-CCCeEEEEecCCceE--
Q 004329 164 -IVSGS-SDTTIKLWKGK--KC------A-------QTFVGHTDTVRGLSVMPGVG-IISAS-HDCTIRLWALTGQVL-- 222 (760)
Q Consensus 164 -l~tgs-~dg~i~iwd~~--~~------~-------~~~~~h~~~V~~l~~~~~~~-l~s~s-~dg~I~iwd~~~~~~-- 222 (760)
+++++ .++.|++|+.. .. . .....+...++.++|+|+++ +++++ .++.|.+|++....+
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 54444 58899999743 21 1 11223456688999999886 55555 689999999854332
Q ss_pred -EEee---cCCCcEEEEEEeCCC-eEEEEeC--CCcEEEEe-C---Cc--eEEEEecCCcEEEEEEccCCc-EEEEE-cC
Q 004329 223 -MEMV---GHTAIVYSIDSHASG-LIVSGSE--DRFAKIWK-D---GV--CVQSIEHPGCVWDAKFLENGD-IVTAC-SD 287 (760)
Q Consensus 223 -~~~~---~h~~~v~~v~~~p~~-~l~s~s~--Dg~I~iwd-~---~~--~~~~~~~~~~v~~v~~~~~g~-lvt~~-~d 287 (760)
..+. .+.....+++|+|+| +|+++.. ++.|.+|+ . +. .+..+.....+.+++|+|+|+ +++++ .+
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence 2222 234567899999999 6655554 58999998 2 33 333444444788999999999 66666 57
Q ss_pred CcEEEEeCC--CCee
Q 004329 288 GVTRIWTVH--SDKV 300 (760)
Q Consensus 288 g~I~vw~~~--~~~~ 300 (760)
+.|.+|+++ ++++
T Consensus 328 ~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 328 NVIQIFERDQATGLL 342 (361)
T ss_dssp TEEEEEEECTTTCCE
T ss_pred CCEEEEEEECCCCcE
Confidence 999997654 5554
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=1e-15 Score=168.12 Aligned_cols=196 Identities=12% Similarity=0.091 Sum_probs=142.5
Q ss_pred CCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCC--------ccc--eeeeEeeCCCCCeEEEEEeCCCCCCCCcEEE
Q 004329 18 HEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDK--------RKY--HSSKILLGHTSFVGPLAWISPNEEFPEGGLV 86 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~--------~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~ 86 (760)
+...++.+++++++. +++++.|+ +++|+...... ... ........|...|.+++|+|++. +|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-----~la 108 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-----TLS 108 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-----EEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-----EEE
Confidence 344688999998777 88888887 89987531100 000 01112234677899999999987 577
Q ss_pred ----EEeCCCeEEEEECCCC--------ce---EEEEeCCCccEEEEEec---CCeEEEEECCCeEEEEECCc--eeEEe
Q 004329 87 ----SGGMDTMVLVWDLGSG--------EK---VQTLQGHKLQVTGVTLD---NEDIVSSSVDSTLKRWRKGK--LVEFW 146 (760)
Q Consensus 87 ----sgs~dg~I~vwd~~~~--------~~---~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vwd~~~--~~~~~ 146 (760)
+|+.|+.|++||+.++ +. ...+.+|...|.+++|+ +..+++++.||+|++||... .....
T Consensus 109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999998654 22 45566799999999997 34599999999999999863 34445
Q ss_pred ecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC-CceEEeecC-------CCceEEEEEeCCCeEE--EEeCCC-----
Q 004329 147 EAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK-KCAQTFVGH-------TDTVRGLSVMPGVGII--SASHDC----- 210 (760)
Q Consensus 147 ~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~-~~~~~~~~h-------~~~V~~l~~~~~~~l~--s~s~dg----- 210 (760)
.+|...|++++|+|+|. +++|+.||.|++||.+ +....+..| ...|.+++|+++..++ .++.||
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 67888999999999987 8899999999999977 344444433 3378999999877744 233443
Q ss_pred -eEEEEecCC
Q 004329 211 -TIRLWALTG 219 (760)
Q Consensus 211 -~I~iwd~~~ 219 (760)
.+++|++..
T Consensus 269 ~~v~i~~l~~ 278 (434)
T 2oit_A 269 PDVVMALLPK 278 (434)
T ss_dssp CEEEEEECCC
T ss_pred CceEEEEecc
Confidence 388999753
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.68 E-value=4.9e-15 Score=156.23 Aligned_cols=246 Identities=11% Similarity=0.019 Sum_probs=174.5
Q ss_pred CccccCCCceEeEEecc-CCC-CEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEee-CC----CCCeEEE
Q 004329 1 MMDIDFKEYQLSSELRG-HED-DVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GH----TSFVGPL 71 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~g-H~~-~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h----~~~V~~l 71 (760)
|..||..+.+...++.. +.. .+.+++|+|+++ +++++.++.|.+||+.+++ ....+. ++ ...+.++
T Consensus 13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-----TLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-----EEEEEECCBTTEEEECTTCE
T ss_pred EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-----eEeeEEcCCcccccccccce
Confidence 45789999999888873 322 588999999996 4566678999999998665 222222 11 2257789
Q ss_pred EEeCCCCCCCCcEEEEEe------------CCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEE
Q 004329 72 AWISPNEEFPEGGLVSGG------------MDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 72 ~~~~~~~~~~~~~l~sgs------------~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vw 137 (760)
+|+|++. .+++++ .++.|.+||+.+++....+.. ...+.+++|+ +++++++ ++.+.+|
T Consensus 88 ~~s~dg~-----~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 88 ALSPDGK-----TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp EECTTSS-----EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred EECCCCC-----EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 9999987 466665 579999999999888877764 3456777887 4457666 7899999
Q ss_pred ECC--ceeEEeecCC--cCeEEEEEeCCCc-EEEEE-CCC-----------------------cEEEEeCCCce---EEe
Q 004329 138 RKG--KLVEFWEAHN--APIQTVIRIPSGE-IVSGS-SDT-----------------------TIKLWKGKKCA---QTF 185 (760)
Q Consensus 138 d~~--~~~~~~~~~~--~~v~~v~~~~~~~-l~tgs-~dg-----------------------~i~iwd~~~~~---~~~ 185 (760)
|.. +....+..+. .+ +.++|++. ++..+ .++ .|.+||..... ..+
T Consensus 160 d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp ETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred ECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 975 4444444333 22 26677776 33222 222 46888865432 234
Q ss_pred ecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCce
Q 004329 186 VGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC 260 (760)
Q Consensus 186 ~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~ 260 (760)
..+...+.+++|+|++. ++++ ++.|++||+.. +.+..+. ....+.+++|+|++ ++++++.++.|++|| .++.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 55677888999999887 5555 79999999864 4444444 44567899999999 788888999999999 6667
Q ss_pred EEEEe
Q 004329 261 VQSIE 265 (760)
Q Consensus 261 ~~~~~ 265 (760)
+..+.
T Consensus 314 ~~~~~ 318 (337)
T 1pby_B 314 KGQVD 318 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=6.1e-16 Score=170.00 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=145.9
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECCc------------eeE-----EeecCCcC
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGK------------LVE-----FWEAHNAP 152 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~------------~~~-----~~~~~~~~ 152 (760)
+.+++|+... . + +...+..++++ ++.+++++.|+ +++|+... ... ....+...
T Consensus 23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4677776431 1 1 23345566665 77788898888 88885321 111 11234567
Q ss_pred eEEEEEeCCCc-EE----EEECCCcEEEEeCCCc-------------eEEeecCCCceEEEEEeCC-Ce-EEEEeCCCeE
Q 004329 153 IQTVIRIPSGE-IV----SGSSDTTIKLWKGKKC-------------AQTFVGHTDTVRGLSVMPG-VG-IISASHDCTI 212 (760)
Q Consensus 153 v~~v~~~~~~~-l~----tgs~dg~i~iwd~~~~-------------~~~~~~h~~~V~~l~~~~~-~~-l~s~s~dg~I 212 (760)
|.+++|+|++. ++ +|+.|+.|++||.... ...+.+|...|++++|+|+ +. +++++.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999988 55 5778999999984322 3456679999999999996 44 9999999999
Q ss_pred EEEecCC-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe-c-------CCcEEEEEEccCCcE
Q 004329 213 RLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-H-------PGCVWDAKFLENGDI 281 (760)
Q Consensus 213 ~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~-~-------~~~v~~v~~~~~g~l 281 (760)
++||++. .......+|...|++++|+|+| +|++|+.||.|++|| .+.....+. | ...|.+++|++++.+
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 9999854 4555667889999999999999 999999999999999 435555553 2 238999999998885
Q ss_pred EE--EEcCCc------EEEEeCCCC
Q 004329 282 VT--ACSDGV------TRIWTVHSD 298 (760)
Q Consensus 282 vt--~~~dg~------I~vw~~~~~ 298 (760)
++ ++.||. +++|++...
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEccCCCccCCCCceEEEEeccC
Confidence 43 333443 899999764
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=1.1e-14 Score=157.38 Aligned_cols=283 Identities=12% Similarity=0.025 Sum_probs=188.2
Q ss_pred ccCCCceEeEEeccCCCCEEE-----EEEcCCCe-EEEEEC-CCe--EEEEeCCCCCCccceeeeEeeCCCCCeEEEEEe
Q 004329 4 IDFKEYQLSSELRGHEDDVRG-----ICVCDNVG-IATSSR-DRT--VRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWI 74 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~V~~-----v~~~~~~~-l~tgs~-Dg~--i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 74 (760)
+|..+......+..|...+.. .+|+|||+ |+.++. +|. |.+||+.+++ ......++...+.+..|+
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEEC
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEc
Confidence 355667788889988887777 88999999 888877 674 8888887654 333345555555577899
Q ss_pred CCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe--c--CCeEEEE----------------------
Q 004329 75 SPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--D--NEDIVSS---------------------- 128 (760)
Q Consensus 75 ~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~--~--~~~l~sg---------------------- 128 (760)
|+++ .|+.++.++.|++||+.+++.......+...+....+ + +..++..
T Consensus 90 pdg~-----~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 90 PDDD-----ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTSS-----EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCCC-----EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 9998 6888899999999999999887777766665544433 3 3334322
Q ss_pred ECCCeEEEEECC-ceeEEeecCCcCeEEEEEeC-CCc-EEEEECC------CcEEEEeCC-CceEEeecCC--CceEEEE
Q 004329 129 SVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIP-SGE-IVSGSSD------TTIKLWKGK-KCAQTFVGHT--DTVRGLS 196 (760)
Q Consensus 129 s~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~-~~~-l~tgs~d------g~i~iwd~~-~~~~~~~~h~--~~V~~l~ 196 (760)
..++.|.+||.. .....+..+...+..+.|+| +|. ++.++.+ ..|.++|.. ...+.+..+. ..+....
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 244678899874 34445556667789999999 887 5555543 378888854 3444555544 3578899
Q ss_pred EeCCCe-EEEEeC-CC----eEEEEecCCceEEEeecCCC---c---EEEEEEeCCC-eEEEE---------eCCCcEEE
Q 004329 197 VMPGVG-IISASH-DC----TIRLWALTGQVLMEMVGHTA---I---VYSIDSHASG-LIVSG---------SEDRFAKI 254 (760)
Q Consensus 197 ~~~~~~-l~s~s~-dg----~I~iwd~~~~~~~~~~~h~~---~---v~~v~~~p~~-~l~s~---------s~Dg~I~i 254 (760)
|+|++. ++..+. ++ .|++||+.+.....+..... . ...+.|+|+| .++.. ..+..|++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 999877 654433 22 39999986543333322111 0 1113688998 45432 55678999
Q ss_pred Ee--CCceEEEEecCC-----------cEEEEEEccCCc-EEEEE-cCCcEEEEeCC
Q 004329 255 WK--DGVCVQSIEHPG-----------CVWDAKFLENGD-IVTAC-SDGVTRIWTVH 296 (760)
Q Consensus 255 wd--~~~~~~~~~~~~-----------~v~~v~~~~~g~-lvt~~-~dg~I~vw~~~ 296 (760)
|| .+.......+.. .+.+++|+|||+ ++.++ .+|...+|.++
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99 344433334554 578899999998 55444 47777777654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=177.65 Aligned_cols=289 Identities=8% Similarity=0.011 Sum_probs=196.9
Q ss_pred CccccCCCceEeEEeccCCC---CEEEEEEcCCCe-EEEEEC---------CCeEEEEeCCCCCCccceeeeEeeCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHED---DVRGICVCDNVG-IATSSR---------DRTVRFWSLDPSDKRKYHSSKILLGHTSF 67 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~---~V~~v~~~~~~~-l~tgs~---------Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~ 67 (760)
|+.||..+.+....+.+|.. .|.+++|+|||+ |++++. |+.|++||+.+++.... ..+ ...
T Consensus 38 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---~~l---~~~ 111 (719)
T 1z68_A 38 IVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---NEL---PRP 111 (719)
T ss_dssp EEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---SCC---CSS
T ss_pred EEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---eec---Ccc
Confidence 46789999888887877755 499999999999 888776 79999999986652000 111 246
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE-eCCCccE-----------------EEEEec--CCeEEE
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-QGHKLQV-----------------TGVTLD--NEDIVS 127 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-~~h~~~V-----------------~~l~~~--~~~l~s 127 (760)
+.+++|+|+++ .|+.+. ++.|++|++.+++..... .++...| .+++|+ ++.|++
T Consensus 112 ~~~~~~SPDG~-----~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 112 IQYLCWSPVGS-----KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp BCCEEECSSTT-----CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cccceECCCCC-----EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 88999999998 366664 789999999888765433 2333323 378887 556888
Q ss_pred EECCC----------------------------------eEEEEECCceeE----E------eecCCcCeEEEEEeCCCc
Q 004329 128 SSVDS----------------------------------TLKRWRKGKLVE----F------WEAHNAPIQTVIRIPSGE 163 (760)
Q Consensus 128 gs~dg----------------------------------~v~vwd~~~~~~----~------~~~~~~~v~~v~~~~~~~ 163 (760)
++.|. .+++||...... . +..|...+..++|+|+++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 87652 788998753221 1 235778899999999988
Q ss_pred EE-EEECC----CcEEEEe----CCC--ceEEe----ecCCCceE-----EEEEeCCCe-EE--EEeCCC--eEEEEecC
Q 004329 164 IV-SGSSD----TTIKLWK----GKK--CAQTF----VGHTDTVR-----GLSVMPGVG-II--SASHDC--TIRLWALT 218 (760)
Q Consensus 164 l~-tgs~d----g~i~iwd----~~~--~~~~~----~~h~~~V~-----~l~~~~~~~-l~--s~s~dg--~I~iwd~~ 218 (760)
++ +.... ..|.+|| ... +...+ .+|...+. .+.|+|++. ++ ++..+| .|.+||+.
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence 54 33322 2488888 543 22233 45777676 889999876 43 344555 46667776
Q ss_pred CceEEEeecCCCcEEEEEEeCCC-eEEEEeC-----CCcEEEEe--C--Cc-eEEEEe-----cCCcEEEEEEccCCc-E
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-----DRFAKIWK--D--GV-CVQSIE-----HPGCVWDAKFLENGD-I 281 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~-----Dg~I~iwd--~--~~-~~~~~~-----~~~~v~~v~~~~~g~-l 281 (760)
+.....+..+...+..+.++ ++ .++..+. ++..++|. . +. ....+. +...+..+.|+|+|+ +
T Consensus 346 ~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l 424 (719)
T 1z68_A 346 VENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYY 424 (719)
T ss_dssp STTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSE
T ss_pred CCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEE
Confidence 66566676667778887777 66 5554444 48899997 2 22 234443 445788999999998 5
Q ss_pred EE-EEcC--CcEEEEeCCCCeeec
Q 004329 282 VT-ACSD--GVTRIWTVHSDKVAD 302 (760)
Q Consensus 282 vt-~~~d--g~I~vw~~~~~~~~~ 302 (760)
+. ++.+ ..+.+|++.+++...
T Consensus 425 ~~~~s~~~~p~~~l~d~~~g~~~~ 448 (719)
T 1z68_A 425 ALVCYGPGIPISTLHDGRTDQEIK 448 (719)
T ss_dssp EEEECCBSSCEEEEECSSSCCEEE
T ss_pred EEEcCCCCCCeEEEEECCCCCEEE
Confidence 43 3333 578899998877543
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=1.5e-13 Score=147.05 Aligned_cols=265 Identities=9% Similarity=0.077 Sum_probs=171.5
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
.+|..+.++......|...+..++|+|+++ |++++.+ +.|++|+++... ...........+......+++ ++
T Consensus 33 ~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~p~~~~~--dg 109 (361)
T 3scy_A 33 RFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGADPCYLTT--NG 109 (361)
T ss_dssp EEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSCEEEEEE--CS
T ss_pred EEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCCcEEEEE--CC
Confidence 345555554433222778888999999998 8888876 899999987431 122333444556667778887 55
Q ss_pred CCCCCcEEEEEe-CCCeEEEEECCCCceEE----EE--eC--------CCccEEEEEec--CCeEEEEE-CCCeEEEEEC
Q 004329 78 EEFPEGGLVSGG-MDTMVLVWDLGSGEKVQ----TL--QG--------HKLQVTGVTLD--NEDIVSSS-VDSTLKRWRK 139 (760)
Q Consensus 78 ~~~~~~~l~sgs-~dg~I~vwd~~~~~~~~----~l--~~--------h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~ 139 (760)
. ++++++ .++.|.+|++.....+. .. .+ +...+.+++|+ ++++++++ .++.+++|+.
T Consensus 110 ~-----~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 110 K-----NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp S-----EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred C-----EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 4 355554 68999999997543221 11 11 12345788887 44455554 5889999975
Q ss_pred C--ce------e-------EEeecCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEeCCCc----eEEee---cCCCceEEE
Q 004329 140 G--KL------V-------EFWEAHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWKGKKC----AQTFV---GHTDTVRGL 195 (760)
Q Consensus 140 ~--~~------~-------~~~~~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd~~~~----~~~~~---~h~~~V~~l 195 (760)
. .. + .....+......++|+|+|+ +++++ .++.|.+|+.... ...+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 4 21 1 11223455678999999998 55555 6899999995432 12222 233557899
Q ss_pred EEeCCCe-EEEEeC--CCeEEEEecC---Cc--eEEEeecCCCcEEEEEEeCCC-eEEEEe-CCCcEEEEe----CCceE
Q 004329 196 SVMPGVG-IISASH--DCTIRLWALT---GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK----DGVCV 261 (760)
Q Consensus 196 ~~~~~~~-l~s~s~--dg~I~iwd~~---~~--~~~~~~~h~~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd----~~~~~ 261 (760)
+|+|+++ ++++.. ++.|.+|+++ +. .+..+.. ...+.+++|+|+| +|++++ .++.|.+|+ +++..
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 9999887 545554 4899999984 33 3333443 5577899999999 677766 679999975 34443
Q ss_pred EEEe--cCCcEEEEEEc
Q 004329 262 QSIE--HPGCVWDAKFL 276 (760)
Q Consensus 262 ~~~~--~~~~v~~v~~~ 276 (760)
.... +...+.|+.|.
T Consensus 344 ~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 344 DIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ECSCCEECSSEEEEEEE
T ss_pred ecceeeeCCCCeEEEEc
Confidence 3321 33478888885
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=7e-13 Score=136.77 Aligned_cols=230 Identities=16% Similarity=0.237 Sum_probs=172.5
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe------CCCccEEEEEe-c-CCeEEEEEC--CC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ------GHKLQVTGVTL-D-NEDIVSSSV--DS 132 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~------~h~~~V~~l~~-~-~~~l~sgs~--dg 132 (760)
++-..+.++++.+++. ++++...++.|.+||.. ++.+..+. +|...+.++++ + ++.++.+.. ++
T Consensus 27 g~~~~p~~v~~~~~g~-----l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECTTCC-----EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccCCCceEEECCCCC-----EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4556789999999876 56777789999999987 66666654 24467889999 3 666666664 89
Q ss_pred eEEEEECC-ceeEEee-cCCcCeEEEEEeCCCcEEEE-ECCCcEEEEeCCC-ceEEee--cCCCceEEEEEeCCCe-EEE
Q 004329 133 TLKRWRKG-KLVEFWE-AHNAPIQTVIRIPSGEIVSG-SSDTTIKLWKGKK-CAQTFV--GHTDTVRGLSVMPGVG-IIS 205 (760)
Q Consensus 133 ~v~vwd~~-~~~~~~~-~~~~~v~~v~~~~~~~l~tg-s~dg~i~iwd~~~-~~~~~~--~h~~~V~~l~~~~~~~-l~s 205 (760)
.|++||.. +....+. .+...+.++++.+++.++.+ ..++.|.+||... ....+. .+...+.++++++++. +++
T Consensus 101 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99999864 4444443 33457889999999986544 5678999999543 333443 3456789999999887 455
Q ss_pred EeCCCeEEEEecCCceEEEeecC--CCcEEEEEEeCCC-eEEEEeCCC-cEEEEe-CCceEEEEec-C--CcEEEEEEcc
Q 004329 206 ASHDCTIRLWALTGQVLMEMVGH--TAIVYSIDSHASG-LIVSGSEDR-FAKIWK-DGVCVQSIEH-P--GCVWDAKFLE 277 (760)
Q Consensus 206 ~s~dg~I~iwd~~~~~~~~~~~h--~~~v~~v~~~p~~-~l~s~s~Dg-~I~iwd-~~~~~~~~~~-~--~~v~~v~~~~ 277 (760)
.+.++.|++||.+++.+..+..+ ...+.+++++++| ++++...++ .|.+|| .+..+..+.. . ..+.+++++|
T Consensus 181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET
T ss_pred ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECC
Confidence 56689999999988887777543 3678999999999 666666675 999999 6677777652 2 2588999999
Q ss_pred CCcEEEEEcCCcEEEEeCCCC
Q 004329 278 NGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 278 ~g~lvt~~~dg~I~vw~~~~~ 298 (760)
+|.+++++.|+.|++|++...
T Consensus 261 ~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEEETTTEEEEEECSCC
T ss_pred CCcEEEECCCCeEEEEEcccc
Confidence 999666678999999998654
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.7e-14 Score=169.53 Aligned_cols=261 Identities=9% Similarity=0.016 Sum_probs=173.5
Q ss_pred EEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC---CeEEEEEeCCCCCCCCcEEEEEeC---------C
Q 004329 24 GICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS---FVGPLAWISPNEEFPEGGLVSGGM---------D 91 (760)
Q Consensus 24 ~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~l~sgs~---------d 91 (760)
+++|+|++.++..+.|++|++||+.+++ ....+.+|.. .+.+++|+|+++ +|++++. +
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~-----~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQ-----FVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSS-----EEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCc-----EEEEEccccccccceeeEEECCCCC-----eEEEEecCceeEEeecc
Confidence 7899999997777789999999998765 3334444433 489999999998 5777765 7
Q ss_pred CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEe-ecCCcCe-------------
Q 004329 92 TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFW-EAHNAPI------------- 153 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~-~~~~~~v------------- 153 (760)
+.|++||+.+++.+... .....+.+++|+ ++.++.++ ++.|++|+.. +..... .++...+
T Consensus 90 ~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred eEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 89999999988762101 112457788887 45577765 8899999874 222211 2222222
Q ss_pred ----EEEEEeCCCc-EEEEECCC----------------------------------cEEEEeCCCceE----------E
Q 004329 154 ----QTVIRIPSGE-IVSGSSDT----------------------------------TIKLWKGKKCAQ----------T 184 (760)
Q Consensus 154 ----~~v~~~~~~~-l~tgs~dg----------------------------------~i~iwd~~~~~~----------~ 184 (760)
.++.|+|||+ |++++.|. .|++||...... .
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 4899999998 66666442 788999654321 1
Q ss_pred eecCCCceEEEEEeCCCeEEEE-eCC----CeEEEEe----cCCce-EEEe----ecCCCcEE-----EEEEeCCC-eEE
Q 004329 185 FVGHTDTVRGLSVMPGVGIISA-SHD----CTIRLWA----LTGQV-LMEM----VGHTAIVY-----SIDSHASG-LIV 244 (760)
Q Consensus 185 ~~~h~~~V~~l~~~~~~~l~s~-s~d----g~I~iwd----~~~~~-~~~~----~~h~~~v~-----~v~~~p~~-~l~ 244 (760)
+.+|...+.+++|+|+++++.. ... ..|.+|| ..+.. ...+ .+|...+. .+.|+|+| .++
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 3358888999999999874433 322 2488899 64433 2222 36666666 88999999 443
Q ss_pred --EEeCCCc--EEEEe-CCceEEEEe-cCCcEEEEEEccCCc-EEEEEcC-----CcEEEEeCCC
Q 004329 245 --SGSEDRF--AKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHS 297 (760)
Q Consensus 245 --s~s~Dg~--I~iwd-~~~~~~~~~-~~~~v~~v~~~~~g~-lvt~~~d-----g~I~vw~~~~ 297 (760)
+...+|. |.+|| .+.....+. +...+..+.++ +++ ++..+.+ +..++|.+..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 3556665 55556 222234444 44467887777 776 6555554 8889998764
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.61 E-value=2.4e-14 Score=163.98 Aligned_cols=225 Identities=14% Similarity=0.114 Sum_probs=161.7
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeC-CCeEEEEECCCCceEEEEeCCC-ccEEEEEecCCe-EEEEEC---CCeEEEE-
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGM-DTMVLVWDLGSGEKVQTLQGHK-LQVTGVTLDNED-IVSSSV---DSTLKRW- 137 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~-dg~I~vwd~~~~~~~~~l~~h~-~~V~~l~~~~~~-l~sgs~---dg~v~vw- 137 (760)
..+|.+++|+|+++ .|++++. ||++.+|++.+++.. .+..|. ..+.++.|+++. +++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~-----~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-----KLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTT-----EEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCC-----eEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEE
Confidence 56799999999998 5777766 999999999766554 444454 689999998445 555554 4545555
Q ss_pred -EC--CceeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCc-eEEeecCCCceEEEEEeCCCe-EEEEeCC-
Q 004329 138 -RK--GKLVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKC-AQTFVGHTDTVRGLSVMPGVG-IISASHD- 209 (760)
Q Consensus 138 -d~--~~~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~-~~~~~~h~~~V~~l~~~~~~~-l~s~s~d- 209 (760)
+. ......+..+. .+....|+|++. +++.+.++.+.+||.... ...+..+.. .+++|+|+++ +++++.+
T Consensus 95 ~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp EETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred EeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 55 33333333222 344567788775 455555566669995432 233333333 7899999877 7767776
Q ss_pred ---CeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCC--cEEEEe--CCceEEEEe-cCCcEEEEE------
Q 004329 210 ---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR--FAKIWK--DGVCVQSIE-HPGCVWDAK------ 274 (760)
Q Consensus 210 ---g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg--~I~iwd--~~~~~~~~~-~~~~v~~v~------ 274 (760)
+.|++||+.+.....+..|...+.+++|+||| .|+++..++ .|++|| .++.. .+. |...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred CCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 78999998776677888899999999999999 888888888 899999 45555 443 555666666
Q ss_pred --EccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 275 --FLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 275 --~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
|+|||. +++++.||.+++|++ ++..
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 999999 678888999999999 5543
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.57 E-value=2.6e-13 Score=143.75 Aligned_cols=244 Identities=10% Similarity=0.002 Sum_probs=162.8
Q ss_pred CccccCCCceEeEEeccCC-CCEEEEEEcCCCe-E-EEEECCCeEEEEeCCCCCCccceeeeEeeC-C-----CCCeEEE
Q 004329 1 MMDIDFKEYQLSSELRGHE-DDVRGICVCDNVG-I-ATSSRDRTVRFWSLDPSDKRKYHSSKILLG-H-----TSFVGPL 71 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~-~~V~~v~~~~~~~-l-~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-h-----~~~V~~l 71 (760)
|+.||..+.+..+++..+. ..+..++|+|+++ + ++++.++.|.+||+.+++ ....+.. + ...+.++
T Consensus 23 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-----~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 23 LHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-----NTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp EEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEESCCSTTEEEECSSCE
T ss_pred EEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-----EEEEEEcccccccccccccce
Confidence 4678999999998887654 3578999999997 4 555678999999998654 2333332 2 2347889
Q ss_pred EEeCCCCCCCCcEEEEEeCC------------CeEEEEECCCCce---EEEEeCCCccEEEEEec-CCeEEEEECCCeEE
Q 004329 72 AWISPNEEFPEGGLVSGGMD------------TMVLVWDLGSGEK---VQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLK 135 (760)
Q Consensus 72 ~~~~~~~~~~~~~l~sgs~d------------g~I~vwd~~~~~~---~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~ 135 (760)
+|+|+++ ++++++.+ +.|.+||+.+++. +..+. +...+.+++|+ ++.+++++. .|.
T Consensus 98 ~~spdg~-----~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~ 169 (349)
T 1jmx_B 98 AISPDGK-----EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIY 169 (349)
T ss_dssp EECTTSS-----EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEESS--SEE
T ss_pred EECCCCC-----EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEccC--cEE
Confidence 9999987 57777755 8999999988543 33444 33467888887 444666544 499
Q ss_pred EEECC--ceeEEeecCCc------------------------CeEEEEEeCCCc-----------EE-EEECCCcEEEEe
Q 004329 136 RWRKG--KLVEFWEAHNA------------------------PIQTVIRIPSGE-----------IV-SGSSDTTIKLWK 177 (760)
Q Consensus 136 vwd~~--~~~~~~~~~~~------------------------~v~~v~~~~~~~-----------l~-tgs~dg~i~iwd 177 (760)
+||.. +....+..+.. ....+.+.+++. ++ ....++.+++|+
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 99874 44444433210 233455554331 11 222334444444
Q ss_pred CCCceEEeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEecCC-ceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEE
Q 004329 178 GKKCAQTFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAK 253 (760)
Q Consensus 178 ~~~~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~ 253 (760)
. ..+...+.+++++| ++. ++++ ++.|.+||+.. +.+..+. ....+.+++|+|++ .|++++.++.|+
T Consensus 250 ~-------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 250 F-------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp E-------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred c-------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEE
Confidence 2 23566788999999 887 4444 89999999864 4444443 34457799999998 777788899999
Q ss_pred EEe--CCceEEEEecC
Q 004329 254 IWK--DGVCVQSIEHP 267 (760)
Q Consensus 254 iwd--~~~~~~~~~~~ 267 (760)
+|| +++.+..+..+
T Consensus 320 v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 320 VFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEETTTTEEEEEEECS
T ss_pred EEeccccceeeeeecC
Confidence 999 56677776644
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=2.1e-12 Score=133.09 Aligned_cols=226 Identities=14% Similarity=0.242 Sum_probs=163.1
Q ss_pred cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEe------eCCCCCeEEEEEe-CCCCCCCCcEEEEE
Q 004329 17 GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKIL------LGHTSFVGPLAWI-SPNEEFPEGGLVSG 88 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~------~~h~~~V~~l~~~-~~~~~~~~~~l~sg 88 (760)
+|-....++++++++. +++.+.++.|++||.. +. ....+ .+|...+.++++. +++. ++.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~-----~~~~~~~~~~~~~~~~~p~~i~~~~~~g~------l~v~ 94 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR-----FKFQFGECGKRDSQLLYPNRVAVVRNSGD------IIVT 94 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC-----EEEEECCBSSSTTCBSSEEEEEEETTTTE------EEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc-----EEEEecccCCCcccccCceEEEEEcCCCe------EEEE
Confidence 3456799999999998 6666788999999986 43 12222 1344678999995 4443 4444
Q ss_pred eC--CCeEEEEECCCCceEEEEe-CCCccEEEEEec-CCe-EEEEECCCeEEEEECC-ceeEEee--cCCcCeEEEEEeC
Q 004329 89 GM--DTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD-NED-IVSSSVDSTLKRWRKG-KLVEFWE--AHNAPIQTVIRIP 160 (760)
Q Consensus 89 s~--dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~-~~~-l~sgs~dg~v~vwd~~-~~~~~~~--~~~~~v~~v~~~~ 160 (760)
.. ++.|++|| .+++.+..+. .+...+.+++++ ++. +++...++.|.+|+.. +....+. .+...+..+++.+
T Consensus 95 ~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 95 ERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp ECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS
T ss_pred cCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC
Confidence 43 89999999 5677776664 344678899997 334 5555678899999865 4444443 3445689999999
Q ss_pred CCcEE-EEECCCcEEEEeCCC-ceEEeecC--CCceEEEEEeCCCeE-EEEeCCC-eEEEEecCCceEEEeecCCC--cE
Q 004329 161 SGEIV-SGSSDTTIKLWKGKK-CAQTFVGH--TDTVRGLSVMPGVGI-ISASHDC-TIRLWALTGQVLMEMVGHTA--IV 232 (760)
Q Consensus 161 ~~~l~-tgs~dg~i~iwd~~~-~~~~~~~h--~~~V~~l~~~~~~~l-~s~s~dg-~I~iwd~~~~~~~~~~~h~~--~v 232 (760)
++.++ +.+.++.|++||... ....+..+ ...+.++++++++.+ ++...++ .|.+||.+++.+..+..+.. .+
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQC 253 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCE
T ss_pred CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcc
Confidence 99855 445689999999643 34444333 367899999998774 4555565 99999999888887776543 48
Q ss_pred EEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 233 YSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 233 ~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+++++|+| ++++ +.|++|++|+
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEE
Confidence 899999999 5555 6799999998
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.56 E-value=3.3e-13 Score=144.48 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=178.3
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEeeC------
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILLG------ 63 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~------ 63 (760)
|+.||..+.++..++..+..+ .++|+|+++ +++++ .+++|.+||..+.+ ....+..
T Consensus 33 v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-----~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 33 VHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-----FEKEISLPPKRVQ 105 (361)
T ss_dssp EEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-----EEEEEEECTTBCC
T ss_pred EEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-----EEEEEEcCccccc
Confidence 357898999999999887766 899999998 66665 36789999987655 2333321
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEEEECCCCceEEE-EeCCCccEEEEEec---CCeEEEEECCCeEEEE
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGM--DTMVLVWDLGSGEKVQT-LQGHKLQVTGVTLD---NEDIVSSSVDSTLKRW 137 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~~---~~~l~sgs~dg~v~vw 137 (760)
+......++++|+++ +++++.. ++.|.+||+.+++.+.. +... .. ..+.+. ...+++.+.||.+.+|
T Consensus 106 ~g~~p~~i~~spdg~-----~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~-~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGK-----FIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC-WSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp BCCCGGGEEECTTSS-----EEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE-EEEEECTTSSSEEEEEETTSSEEEE
T ss_pred cCCCcceEEECCCCC-----EEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc-ceeEEcCCCCeeEEEECCCCcEEEE
Confidence 234567899999998 5666653 68999999999988877 5532 21 122232 3468899999999998
Q ss_pred ECC---ceeEE------eecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCCce----EEeec------C----CCceE
Q 004329 138 RKG---KLVEF------WEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKKCA----QTFVG------H----TDTVR 193 (760)
Q Consensus 138 d~~---~~~~~------~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~----~~~~~------h----~~~V~ 193 (760)
+.. +.... +..+..++ .+...+++. ++..+.++.+.++|..... ..+.. + .....
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 753 32211 11222222 222344544 5666788999999964321 11110 0 01122
Q ss_pred EEEEeCCCe-EEEEeC-----------CCeEEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C
Q 004329 194 GLSVMPGVG-IISASH-----------DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D 257 (760)
Q Consensus 194 ~l~~~~~~~-l~s~s~-----------dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~ 257 (760)
.++++|++. ++++.. .+.|.+||. +++.+.++..+. +.+++++|+| ++++++. +.|.+|| +
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 378899744 444432 348999997 467777777776 9999999999 7777776 9999999 6
Q ss_pred C--ceEEEE-ecCCcEEEEEEccCCc
Q 004329 258 G--VCVQSI-EHPGCVWDAKFLENGD 280 (760)
Q Consensus 258 ~--~~~~~~-~~~~~v~~v~~~~~g~ 280 (760)
+ +.+..+ .+....+.++++|+|.
T Consensus 335 ~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcceeeEEeccCCCCcEEEEecCCCC
Confidence 7 788886 4666889999999984
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=2.7e-13 Score=146.51 Aligned_cols=280 Identities=12% Similarity=0.007 Sum_probs=177.1
Q ss_pred ccCCCceEeEEeccCCCC-----EEEEEEcCCCe-EEEEECC---CeEEEEeCCCCCCccceeeeEeeCCCCC-eEEEEE
Q 004329 4 IDFKEYQLSSELRGHEDD-----VRGICVCDNVG-IATSSRD---RTVRFWSLDPSDKRKYHSSKILLGHTSF-VGPLAW 73 (760)
Q Consensus 4 ~d~~~~~l~~~l~gH~~~-----V~~v~~~~~~~-l~tgs~D---g~i~iWd~~~~~~~~~~~~~~~~~h~~~-V~~l~~ 73 (760)
.|..+.+....+..+... +.+++|+|+|+ |+.++.+ ..|.+||+.+++ . ..+..+... ...+.|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----~-~~l~~~~~~~~~~~~~ 88 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----A-VQLTEGKGDNTFGGFI 88 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----E-EECCCSSCBCTTTCEE
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----E-EEeecCCCCccccceE
Confidence 366777777888776554 77889999998 6666543 368888987553 1 222223333 334789
Q ss_pred eCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEE---EEe----------------c--CCeEEEE----
Q 004329 74 ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG---VTL----------------D--NEDIVSS---- 128 (760)
Q Consensus 74 ~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~---l~~----------------~--~~~l~sg---- 128 (760)
+|++. .|+.++.++.|++||+.+++.......+...... +.+ + ++.++.+
T Consensus 89 spdg~-----~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 89 STDER-----AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CTTSS-----EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred CCCCC-----EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 99998 5888888999999999988776665544442222 222 1 2222222
Q ss_pred -ECCCeEEEEECC-ceeEEeecCCcCeEEEEEeC-CCc-EEEEECC------CcEEEEeCCC-ceEEeecC--CCceEEE
Q 004329 129 -SVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIP-SGE-IVSGSSD------TTIKLWKGKK-CAQTFVGH--TDTVRGL 195 (760)
Q Consensus 129 -s~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~-~~~-l~tgs~d------g~i~iwd~~~-~~~~~~~h--~~~V~~l 195 (760)
..+..|.+||.. .....+..+...+..+.|+| ++. ++..+.+ ..|.+||... ..+.+..+ ...+..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 356678889874 22333445667789999999 666 6555543 3588888643 23333333 2358889
Q ss_pred EEeCCCe-EEEEeCC-----CeEEEEecCCceEEEeecCCCcEEEEEEeC-CC-eEEEEe----------------CCCc
Q 004329 196 SVMPGVG-IISASHD-----CTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGS----------------EDRF 251 (760)
Q Consensus 196 ~~~~~~~-l~s~s~d-----g~I~iwd~~~~~~~~~~~h~~~v~~v~~~p-~~-~l~s~s----------------~Dg~ 251 (760)
.|+|++. ++.++.+ +.|++||+.+.....+..... .. +.|+| +| .+++++ .++.
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 9999876 6666554 459999986544433332222 33 88999 98 666554 3478
Q ss_pred EEEEe--CCceEEEEecCC-----------cEEEEEEccCCc-EEEEEc-CCcEEEEeCC
Q 004329 252 AKIWK--DGVCVQSIEHPG-----------CVWDAKFLENGD-IVTACS-DGVTRIWTVH 296 (760)
Q Consensus 252 I~iwd--~~~~~~~~~~~~-----------~v~~v~~~~~g~-lvt~~~-dg~I~vw~~~ 296 (760)
|++|| .+.......+.. .+..++|+|+|+ ++.++. ++...+|.++
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 99999 344333333443 256789999998 555554 5665565543
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=2.4e-12 Score=138.08 Aligned_cols=259 Identities=9% Similarity=0.060 Sum_probs=166.4
Q ss_pred EEEEECC--CeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC-CCceEEEE
Q 004329 33 IATSSRD--RTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG-SGEKVQTL 108 (760)
Q Consensus 33 l~tgs~D--g~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~-~~~~~~~l 108 (760)
++.|+.. +.|.+|+++.... ......... .+...+..++|+|+++ ++++++.+ .|.+|++. +++.....
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g-~l~~~~~~~~~~~~~~~~~a~spdg~-----~l~~~~~~-~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKL-TCKLIKRTEIPQDEPISWMTFDHERK-----NIYGAAMK-KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTT-EEEEEEEEECCTTCCCSEEEECTTSS-----EEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred EEEEEccCCCcEEEEEEECCCC-CEEEeeEEccCCCCCCcEEEECCCCC-----EEEEEccc-eEEEEEECCCCCEEEee
Confidence 5666653 5688877642211 111222221 2345678899999987 57888887 99999997 77665433
Q ss_pred eCC-CccEEEEEec-CCe---EEEEE-------------CCCeEEEEECC---ceeEEee----cCCcCeEEEEEeCCCc
Q 004329 109 QGH-KLQVTGVTLD-NED---IVSSS-------------VDSTLKRWRKG---KLVEFWE----AHNAPIQTVIRIPSGE 163 (760)
Q Consensus 109 ~~h-~~~V~~l~~~-~~~---l~sgs-------------~dg~v~vwd~~---~~~~~~~----~~~~~v~~v~~~~~~~ 163 (760)
... .+.+.+++++ ++. +++++ .+|++.+|+.. +....+. .+...+.++.|+|+|+
T Consensus 78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 211 1224456776 343 33442 68999999763 3333333 2456789999999998
Q ss_pred -EEEEE-CCCcEEEEeCC-Cc-e---EEee--cCCCceEEEEEeCCCe-EEEEe-CCCeEEEEecC---CceE---EEee
Q 004329 164 -IVSGS-SDTTIKLWKGK-KC-A---QTFV--GHTDTVRGLSVMPGVG-IISAS-HDCTIRLWALT---GQVL---MEMV 226 (760)
Q Consensus 164 -l~tgs-~dg~i~iwd~~-~~-~---~~~~--~h~~~V~~l~~~~~~~-l~s~s-~dg~I~iwd~~---~~~~---~~~~ 226 (760)
++++. .++.|++|+.. .. . ..+. .|...++.++|+|+++ +++++ .++.|.+|+++ ++.. ..+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 55554 46799999965 22 2 1222 2456799999999886 55555 47899999863 4432 1222
Q ss_pred -------cCCC------cEEEEE-EeCCC-eEEEEeCC-C-----cEEEEe---CCceEE---EEe-cCCcEEEEEEcc-
Q 004329 227 -------GHTA------IVYSID-SHASG-LIVSGSED-R-----FAKIWK---DGVCVQ---SIE-HPGCVWDAKFLE- 277 (760)
Q Consensus 227 -------~h~~------~v~~v~-~~p~~-~l~s~s~D-g-----~I~iwd---~~~~~~---~~~-~~~~v~~v~~~~- 277 (760)
+|.. .+..++ |+|+| +|++++.+ + .|.+|+ .++... .+. +...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1222 588999 99999 66655432 2 899998 344433 233 344677899999
Q ss_pred --CCc-EEEEEc-CCcEEEEeCCCC
Q 004329 278 --NGD-IVTACS-DGVTRIWTVHSD 298 (760)
Q Consensus 278 --~g~-lvt~~~-dg~I~vw~~~~~ 298 (760)
+|+ +++++. ++.|++|+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 788 666665 589999998776
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=1.1e-11 Score=130.77 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=169.2
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCC------------------------CeEEEEECCCCceEEEEe-CCCccEEEEE
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMD------------------------TMVLVWDLGSGEKVQTLQ-GHKLQVTGVT 119 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~d------------------------g~I~vwd~~~~~~~~~l~-~h~~~V~~l~ 119 (760)
-+.+.++++++++. ++++...+ +.|.+||..+++....+. ++-.....++
T Consensus 23 l~~v~~va~d~~G~-----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTCC-----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred cCCceEEEECCCCC-----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence 46799999999987 45666555 479999999898876665 4456788999
Q ss_pred ec--CCeEEEEECCCeEEEEECCc---eeEEe---------ecCCcCeEEEEEeC-CCcEEEEE--CCCcEEEEeCCC-c
Q 004329 120 LD--NEDIVSSSVDSTLKRWRKGK---LVEFW---------EAHNAPIQTVIRIP-SGEIVSGS--SDTTIKLWKGKK-C 181 (760)
Q Consensus 120 ~~--~~~l~sgs~dg~v~vwd~~~---~~~~~---------~~~~~~v~~v~~~~-~~~l~tgs--~dg~i~iwd~~~-~ 181 (760)
++ ++.+++.+.++.|++|+... .+..+ ..+......++++| ++.++.+. .++.|++|+... .
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~ 177 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF 177 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence 97 44566777789999998753 34444 23445688999999 78865544 589999999443 3
Q ss_pred eEEeec----------CCCceEEEEEeCC-Ce-EEEEeCCCeEEEEecC-CceEEEee--cCCCcEEEEEEeCCC-eEEE
Q 004329 182 AQTFVG----------HTDTVRGLSVMPG-VG-IISASHDCTIRLWALT-GQVLMEMV--GHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 182 ~~~~~~----------h~~~V~~l~~~~~-~~-l~s~s~dg~I~iwd~~-~~~~~~~~--~h~~~v~~v~~~p~~-~l~s 245 (760)
...+.. +-....+++++|+ +. +++...++.|++||.. ++.+..+. .+...+++++++| + .+.+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 344432 2234899999997 66 5666778999999987 88887774 4567899999999 5 3333
Q ss_pred Ee-------CCCcEEEEe--CCceEEEEe----cCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 246 GS-------EDRFAKIWK--DGVCVQSIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 246 ~s-------~Dg~I~iwd--~~~~~~~~~----~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
.+ .+..|++|+ .++.+..+. +...+.+++++|+|. +++...++.|++|+++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33 345899999 778888874 455799999999998 56666799999999864
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=5.3e-12 Score=133.18 Aligned_cols=256 Identities=9% Similarity=0.098 Sum_probs=180.2
Q ss_pred CCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
+..|.++.|++++. ++..+.++.++.|. +. ....+..+...+.+++|++++. +++++..++.|.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~g~-----l~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AE-----PWLEISKKGLQLEGLNFDRQGQ-----LFLLDVFEGNIFKI 71 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CE-----EEEEEESSCCCEEEEEECTTSC-----EEEEETTTCEEEEE
T ss_pred ccccceeeecCCccceeEEeecccCcccc---cc-----eeEEEeccCccccCcEECCCCC-----EEEEECCCCEEEEE
Confidence 34577888998877 66668889999993 22 3445666777889999998876 46678889999999
Q ss_pred ECCCCceEEEEeCCCccEEEEEec-CCeEEEEE-CC----CeEEEEECCce-eE-Eee--cCCcCeEEEEEeCCCcEEEE
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSS-VD----STLKRWRKGKL-VE-FWE--AHNAPIQTVIRIPSGEIVSG 167 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs-~d----g~v~vwd~~~~-~~-~~~--~~~~~v~~v~~~~~~~l~tg 167 (760)
|..+++.......+...+.+++++ ++.++.++ .+ +.|.+||.... .. .+. .+...+.++.+.|+|.++.+
T Consensus 72 d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 151 (333)
T 2dg1_A 72 NPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT 151 (333)
T ss_dssp CTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred eCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE
Confidence 998887765554567889999997 44554444 44 58999987522 22 222 24457899999999997666
Q ss_pred ECC-------CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCe-E-EEEeCCCeEEEEec--CCceEEEe--------ec
Q 004329 168 SSD-------TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVG-I-ISASHDCTIRLWAL--TGQVLMEM--------VG 227 (760)
Q Consensus 168 s~d-------g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~-l-~s~s~dg~I~iwd~--~~~~~~~~--------~~ 227 (760)
+.. +.|..+|... ....+..+...+..++++|++. + ++.+.++.|.+||. .+..+..+ .+
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 553 5566677543 3334444445688999999875 4 44456889999998 34433211 12
Q ss_pred CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEecCC-------cEEEEEEccCCc-EEEEEcCC
Q 004329 228 HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPG-------CVWDAKFLENGD-IVTACSDG 288 (760)
Q Consensus 228 h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~~-------~v~~v~~~~~g~-lvt~~~dg 288 (760)
+ ..+..++++++| ++++...++.|.+|| .+..+..+..+. .+.+++|+|++. ++.++.+|
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 478889999999 666666788999999 666777776443 589999999976 66666554
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=1.8e-12 Score=139.05 Aligned_cols=245 Identities=11% Similarity=0.062 Sum_probs=157.7
Q ss_pred ccCCCceEeE--Eec-cCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCC-CCCCccceeeeEeeCCCCCeEEEEEeCCCC
Q 004329 4 IDFKEYQLSS--ELR-GHEDDVRGICVCDNVG-IATSSRDRTVRFWSLD-PSDKRKYHSSKILLGHTSFVGPLAWISPNE 78 (760)
Q Consensus 4 ~d~~~~~l~~--~l~-gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 78 (760)
+|..+.++.. ... ++...+..++|+|+++ |++++.+ .|.+|++. +++ .........+ +.+.+++|+|+++
T Consensus 21 ~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~---~~~~~~~~~~-g~~~~~~~spdg~ 95 (365)
T 1jof_A 21 FDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE---IVHEASHPIG-GHPRANDADTNTR 95 (365)
T ss_dssp EETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE---EEEEEEEECC-SSGGGGCTTSCCE
T ss_pred EECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC---EEEeeEeecC-CCCccEEECCCCC
Confidence 4445555432 221 3445788999999998 8888888 99999986 443 1111111111 2355688888886
Q ss_pred CCCCcEEEEEe-------------CCCeEEEEECC-CCceEEEEe----CCCccEEEEEec--CCeEEEEE-CCCeEEEE
Q 004329 79 EFPEGGLVSGG-------------MDTMVLVWDLG-SGEKVQTLQ----GHKLQVTGVTLD--NEDIVSSS-VDSTLKRW 137 (760)
Q Consensus 79 ~~~~~~l~sgs-------------~dg~I~vwd~~-~~~~~~~l~----~h~~~V~~l~~~--~~~l~sgs-~dg~v~vw 137 (760)
.. +++++. .+|.+.+|++. +++....+. .+...+.+++|+ +++++++. .++.|++|
T Consensus 96 ~l---~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 96 AI---FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp EE---EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EE---EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 21 134442 68999999997 466544443 255678999997 44566665 46899999
Q ss_pred ECC---cee--EEee--cCCcCeEEEEEeCCCc-EEEEE-CCCcEEEEeCC----Cce---EEee-------cCCC----
Q 004329 138 RKG---KLV--EFWE--AHNAPIQTVIRIPSGE-IVSGS-SDTTIKLWKGK----KCA---QTFV-------GHTD---- 190 (760)
Q Consensus 138 d~~---~~~--~~~~--~~~~~v~~v~~~~~~~-l~tgs-~dg~i~iwd~~----~~~---~~~~-------~h~~---- 190 (760)
+.. +.. ..+. .|...+..++|+|+|+ +++++ .++.|.+|+.. +.. ..+. +|..
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence 864 222 2232 2356789999999997 55555 47899999732 221 1121 1222
Q ss_pred --ceEEEE-EeCCCe-EEEEeCC-C-----eEEEEecC--CceEE---EeecCCCcEEEEEEeC---CC-eEEEEeC-CC
Q 004329 191 --TVRGLS-VMPGVG-IISASHD-C-----TIRLWALT--GQVLM---EMVGHTAIVYSIDSHA---SG-LIVSGSE-DR 250 (760)
Q Consensus 191 --~V~~l~-~~~~~~-l~s~s~d-g-----~I~iwd~~--~~~~~---~~~~h~~~v~~v~~~p---~~-~l~s~s~-Dg 250 (760)
.+..++ |+|+++ +++++.+ . .|.+|++. ++... ....+...+..++++| +| +|++++. ++
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 588999 999886 5555432 2 89999974 44332 1333555567889999 77 8887776 48
Q ss_pred cEEEEe
Q 004329 251 FAKIWK 256 (760)
Q Consensus 251 ~I~iwd 256 (760)
.|.+|+
T Consensus 333 ~v~v~~ 338 (365)
T 1jof_A 333 WLEIYR 338 (365)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999998
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.50 E-value=1.2e-11 Score=133.30 Aligned_cols=239 Identities=12% Similarity=0.045 Sum_probs=160.8
Q ss_pred eeeEeeCCCCCeEE-----EEEeCCCCCCCCcEEEEEeC-CC--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEE
Q 004329 57 SSKILLGHTSFVGP-----LAWISPNEEFPEGGLVSGGM-DT--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIV 126 (760)
Q Consensus 57 ~~~~~~~h~~~V~~-----l~~~~~~~~~~~~~l~sgs~-dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~ 126 (760)
....+..|...... .+|+|++. .|+.++. +| .|.+||+.+++......++...+....|+ ++.|+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~-----~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGS-----KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSC-----EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCC-----EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence 44555666655555 78999998 4666666 66 48899999988877777776665556676 66799
Q ss_pred EEECCCeEEEEECC--ceeEEeecCCcCeEEE--EEeCCCcEEEE-----------------------ECCCcEEEEeCC
Q 004329 127 SSSVDSTLKRWRKG--KLVEFWEAHNAPIQTV--IRIPSGEIVSG-----------------------SSDTTIKLWKGK 179 (760)
Q Consensus 127 sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v--~~~~~~~l~tg-----------------------s~dg~i~iwd~~ 179 (760)
.++.++.+++||.. +.......+...+... .+++++.++.+ ..+..|.+||..
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 99999999999875 4444455555544333 34788885542 234678999955
Q ss_pred C-ceEEeecCCCceEEEEEeC-CCe-EEEEeCC------CeEEEEecCCceEEEeecCC--CcEEEEEEeCCC-eEEEEe
Q 004329 180 K-CAQTFVGHTDTVRGLSVMP-GVG-IISASHD------CTIRLWALTGQVLMEMVGHT--AIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 180 ~-~~~~~~~h~~~V~~l~~~~-~~~-l~s~s~d------g~I~iwd~~~~~~~~~~~h~--~~v~~v~~~p~~-~l~s~s 247 (760)
. ....+..+...+..+.|+| ++. ++.++.+ ..|.++|..+.....+..+. ..+....|+|+| .|+..+
T Consensus 177 ~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 177 TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence 3 4455666778899999999 877 6666653 37888888877777776655 358889999999 554433
Q ss_pred C-CC----cEEEEe--CCceEEEEecCCc------EEEEEEccCCc-EEEE---------EcCCcEEEEeCCCCee
Q 004329 248 E-DR----FAKIWK--DGVCVQSIEHPGC------VWDAKFLENGD-IVTA---------CSDGVTRIWTVHSDKV 300 (760)
Q Consensus 248 ~-Dg----~I~iwd--~~~~~~~~~~~~~------v~~v~~~~~g~-lvt~---------~~dg~I~vw~~~~~~~ 300 (760)
. ++ .|++|| .++.......+.. ...++|+|||+ ++.. ..+..|++||+.+++.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 2 22 399999 4443322222221 11237899998 4432 4467899999988764
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=3.6e-10 Score=116.64 Aligned_cols=274 Identities=13% Similarity=0.018 Sum_probs=187.1
Q ss_pred EeccCCCCEEEEEEcCCCeEEEEEC-CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 14 ELRGHEDDVRGICVCDNVGIATSSR-DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
.+..+...+.++++.++|.+..+.. ++.|.+||.. +. . .......+...+.++++.+++. ++++...++
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~---~-~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~ 78 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK---I-TEYPLPTPDAKVMCLTISSDGE-----VWFTENAAN 78 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC---E-EEEECSSTTCCEEEEEECTTSC-----EEEEETTTT
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC---e-EEecCCcccCceeeEEECCCCC-----EEEeCCCCC
Confidence 3556778899999999999655555 7899999987 44 1 1112223457799999998876 455555578
Q ss_pred eEEEEECCCCceE-EEEeCCCccEEEEEec-CCeEEE-EECCCeEEEEECCceeEEee--cCCcCeEEEEEeCCCcEEEE
Q 004329 93 MVLVWDLGSGEKV-QTLQGHKLQVTGVTLD-NEDIVS-SSVDSTLKRWRKGKLVEFWE--AHNAPIQTVIRIPSGEIVSG 167 (760)
Q Consensus 93 ~I~vwd~~~~~~~-~~l~~h~~~V~~l~~~-~~~l~s-gs~dg~v~vwd~~~~~~~~~--~~~~~v~~v~~~~~~~l~tg 167 (760)
.|..||.. ++.. ..+..+...+.+++++ ++.++. ...++.|..||.......+. .+...+..+++.+++.+..+
T Consensus 79 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 79 KIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred eEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 99999986 4332 2222345678899997 455544 45678999998753333332 24456889999999986655
Q ss_pred E-CCCcEEEEeCCCceEEe--ecCCCceEEEEEeCCCeEEEEe-CCCeEEEEecCCceEEE-eecCCCcEEEEEEeCCC-
Q 004329 168 S-SDTTIKLWKGKKCAQTF--VGHTDTVRGLSVMPGVGIISAS-HDCTIRLWALTGQVLME-MVGHTAIVYSIDSHASG- 241 (760)
Q Consensus 168 s-~dg~i~iwd~~~~~~~~--~~h~~~V~~l~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~-~~~h~~~v~~v~~~p~~- 241 (760)
. .++.|..||.......+ ..+...+.++++.+++.+..+. .++.|.+||.++..... ...+...+.+++++++|
T Consensus 158 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 158 ENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp ETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred eCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCC
Confidence 5 46889999974333333 2344568899999987755554 57899999986554322 22345789999999999
Q ss_pred eEEEEeCCCcEEEEeCCceEEEEe---cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 242 LIVSGSEDRFAKIWKDGVCVQSIE---HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd~~~~~~~~~---~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
.+++...++.|..||....+..+. +...+.++++ ++|.+..++..+.+..++.++++
T Consensus 238 l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 555555778999999333344443 2357899999 99997777667788888877654
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=5.1e-12 Score=146.85 Aligned_cols=275 Identities=10% Similarity=0.007 Sum_probs=181.6
Q ss_pred EeccCCCCEEEEEEcCCCe-EEEE--ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeE---------EEEEe--CCCCC
Q 004329 14 ELRGHEDDVRGICVCDNVG-IATS--SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVG---------PLAWI--SPNEE 79 (760)
Q Consensus 14 ~l~gH~~~V~~v~~~~~~~-l~tg--s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~ 79 (760)
.+.+|...|..+++++++. +++. +.++..+||....+. ....+..|...+. ...|+ |++..
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-----CcceeCCCCccccccccccCCccceeeeecCCCe
Confidence 4668999999999998876 5655 558899999964332 2334555555555 56666 88872
Q ss_pred CCCcEEEEEe-CCCeEEEEECC--C-CceEEEEeC-----CCccEEEEEec--CCeEEEEECC----------CeEEEEE
Q 004329 80 FPEGGLVSGG-MDTMVLVWDLG--S-GEKVQTLQG-----HKLQVTGVTLD--NEDIVSSSVD----------STLKRWR 138 (760)
Q Consensus 80 ~~~~~l~sgs-~dg~I~vwd~~--~-~~~~~~l~~-----h~~~V~~l~~~--~~~l~sgs~d----------g~v~vwd 138 (760)
+|+.++ .+..|++|++. . ++ ...+.. |...+.+++|+ ++.|++++.+ ..|++||
T Consensus 93 ----~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 93 ----LLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp ----EEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred ----EEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 044443 36678888876 3 43 445554 67788899997 5568888876 5799998
Q ss_pred CCc-------eeEEee-cCCcCeEEEEEeCCCc-EEEEECC--------CcEEEEeCC-C----ceEEe-ecCCCceEEE
Q 004329 139 KGK-------LVEFWE-AHNAPIQTVIRIPSGE-IVSGSSD--------TTIKLWKGK-K----CAQTF-VGHTDTVRGL 195 (760)
Q Consensus 139 ~~~-------~~~~~~-~~~~~v~~v~~~~~~~-l~tgs~d--------g~i~iwd~~-~----~~~~~-~~h~~~V~~l 195 (760)
... ....+. .+...+..+.|+|||+ ++.++.+ ..|++||.. . ....+ .+|...+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 754 445555 5666788899999998 6556544 379999965 2 23333 4467889999
Q ss_pred EEeCCCe-EEEEeCCC--eEEEEecCCceEEEeecCC-Cc--------EEEEEEeCCC-eEEEEeCCCcEEEE--e-CCc
Q 004329 196 SVMPGVG-IISASHDC--TIRLWALTGQVLMEMVGHT-AI--------VYSIDSHASG-LIVSGSEDRFAKIW--K-DGV 259 (760)
Q Consensus 196 ~~~~~~~-l~s~s~dg--~I~iwd~~~~~~~~~~~h~-~~--------v~~v~~~p~~-~l~s~s~Dg~I~iw--d-~~~ 259 (760)
.|+|++. +++++.++ .|.+||..+.....+..+. .. +.+++++|++ ++++++. +.+++| | .+.
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 9999887 56666777 5666676444444443332 22 5678889988 8888888 999999 5 334
Q ss_pred eEEEEe-cCCcEEEEEEccCCc--EE-EEEcCC--cEEEEeCCCCee
Q 004329 260 CVQSIE-HPGCVWDAKFLENGD--IV-TACSDG--VTRIWTVHSDKV 300 (760)
Q Consensus 260 ~~~~~~-~~~~v~~v~~~~~g~--lv-t~~~dg--~I~vw~~~~~~~ 300 (760)
..+.+. +...+..+. +++++ ++ +++.+. .|.+|++.+++.
T Consensus 327 ~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 327 ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 456665 555677661 44444 33 344444 455556666653
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=1.2e-11 Score=132.18 Aligned_cols=251 Identities=10% Similarity=-0.015 Sum_probs=164.7
Q ss_pred CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----------CCCeEEEEECCCCceEEE
Q 004329 38 RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG----------MDTMVLVWDLGSGEKVQT 107 (760)
Q Consensus 38 ~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs----------~dg~I~vwd~~~~~~~~~ 107 (760)
.|++|.+||..+++ ....+..+..+ .++|+|+++ +++++. .++.|.+||..+++.+..
T Consensus 29 ~d~~v~v~D~~t~~-----~~~~i~~g~~p--~i~~spdg~-----~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~ 96 (361)
T 2oiz_A 29 TESRVHVYDYTNGK-----FLGMVPTAFNG--HVQVSNDGK-----KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE 96 (361)
T ss_dssp GGCEEEEEETTTCC-----EEEEEECCEEE--EEEECTTSS-----EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE
T ss_pred ccCeEEEEECCCCe-----EEEEecCCCCC--ceEECCCCC-----EEEEEEecccccccCCCCCEEEEEECcCCcEEEE
Confidence 47899999988765 34455555554 899999998 466665 367899999999998888
Q ss_pred EeCC------CccEEEEEec--CCeEEEEEC--CCeEEEEECCceeEEee-cCCcCeEEEEEeCCC--cEEEEECCCcEE
Q 004329 108 LQGH------KLQVTGVTLD--NEDIVSSSV--DSTLKRWRKGKLVEFWE-AHNAPIQTVIRIPSG--EIVSGSSDTTIK 174 (760)
Q Consensus 108 l~~h------~~~V~~l~~~--~~~l~sgs~--dg~v~vwd~~~~~~~~~-~~~~~v~~v~~~~~~--~l~tgs~dg~i~ 174 (760)
+..+ ......++++ +++++++.. +++|.+||......... ......+.+.+.|++ .+++.+.||.+.
T Consensus 97 i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 97 ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEE
T ss_pred EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEE
Confidence 7632 2345567776 666777763 68999999863322222 112233446677776 378899999999
Q ss_pred EEeCCC---ceE------EeecCCCceEEEEEeCCC-eEEEEeCCCeEEEEecCCceE---EEeec------CCCc----
Q 004329 175 LWKGKK---CAQ------TFVGHTDTVRGLSVMPGV-GIISASHDCTIRLWALTGQVL---MEMVG------HTAI---- 231 (760)
Q Consensus 175 iwd~~~---~~~------~~~~h~~~V~~l~~~~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~~------h~~~---- 231 (760)
+|+... ... .+..+..++ .+.+.+++ .++..+.++.+.++|+..... ..+.. +...
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 987432 221 111222222 22224433 466777899999999854322 11110 1111
Q ss_pred EEEEEEeCCC-eEEEEeC-----------CCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCC
Q 004329 232 VYSIDSHASG-LIVSGSE-----------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 296 (760)
Q Consensus 232 v~~v~~~p~~-~l~s~s~-----------Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~ 296 (760)
...++++|++ .++++.. .+.|.+|| +++.+..+.... +++++|+|+|+ +++++. +.|.+||..
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 1126889997 5444432 34799999 778888888666 99999999999 555554 999999999
Q ss_pred CC--eeech
Q 004329 297 SD--KVADS 303 (760)
Q Consensus 297 ~~--~~~~~ 303 (760)
++ +.+..
T Consensus 334 t~~l~~~~~ 342 (361)
T 2oiz_A 334 QPEPKLLRT 342 (361)
T ss_dssp SSSCEEEEE
T ss_pred CCcceeeEE
Confidence 99 76654
No 179
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.46 E-value=5.4e-12 Score=148.63 Aligned_cols=291 Identities=10% Similarity=0.002 Sum_probs=188.7
Q ss_pred CccccCCCceEeEEeccCCCCE-----EEEEEcCCCe-EEEEECC---------CeEEEEeCCCCCCccceeeeEeeCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDV-----RGICVCDNVG-IATSSRD---------RTVRFWSLDPSDKRKYHSSKILLGHT 65 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V-----~~v~~~~~~~-l~tgs~D---------g~i~iWd~~~~~~~~~~~~~~~~~h~ 65 (760)
|+.||+.+.+....+.+|.... ..+.|+|||+ |+.++.+ +.+.+||+.+++ ...+..|.
T Consensus 38 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~------~~~l~~~~ 111 (740)
T 4a5s_A 38 ILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ------LITEERIP 111 (740)
T ss_dssp EEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE------ECCSSCCC
T ss_pred EEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc------EEEcccCC
Confidence 4678999988888888887532 3478899999 8888876 566799998765 22355677
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE-eCCCccE-----------------EEEEec--CCeE
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-QGHKLQV-----------------TGVTLD--NEDI 125 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-~~h~~~V-----------------~~l~~~--~~~l 125 (760)
..+...+|+|+++. |+.+ .++.|++|++.+++..+.. .++...+ .++.|+ ++.|
T Consensus 112 ~~~~~~~~SPdG~~-----la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 112 NNTQWVTWSPVGHK-----LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp TTEEEEEECSSTTC-----EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred CcceeeEECCCCCE-----EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE
Confidence 88999999999983 6665 5789999999888754422 2333323 246776 5557
Q ss_pred EEEECCC------------------------------------eEEEEECCc-------eeEEeec------CCcCeEEE
Q 004329 126 VSSSVDS------------------------------------TLKRWRKGK-------LVEFWEA------HNAPIQTV 156 (760)
Q Consensus 126 ~sgs~dg------------------------------------~v~vwd~~~-------~~~~~~~------~~~~v~~v 156 (760)
+.++.|. ++++||... ....+.. |...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 7765322 477787654 2333432 77779999
Q ss_pred EEeCCCc-EEEEEC----CCcEEEEeCCCc--------eEEe--ecCCCceE-----EEEEeCCCe-EE-EEe-CC--Ce
Q 004329 157 IRIPSGE-IVSGSS----DTTIKLWKGKKC--------AQTF--VGHTDTVR-----GLSVMPGVG-II-SAS-HD--CT 211 (760)
Q Consensus 157 ~~~~~~~-l~tgs~----dg~i~iwd~~~~--------~~~~--~~h~~~V~-----~l~~~~~~~-l~-s~s-~d--g~ 211 (760)
.|+|+|+ ++.... +..|++||.... ...+ .+|...|. ...|+||+. ++ ..+ .+ ..
T Consensus 266 ~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~ 345 (740)
T 4a5s_A 266 TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRH 345 (740)
T ss_dssp EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEE
T ss_pred EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceE
Confidence 9999998 333322 336899984321 1222 44665554 788999886 54 555 34 45
Q ss_pred EEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeC----CCcEEEEe---CCceEE-EEec-----CCcEEEEEEcc
Q 004329 212 IRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE----DRFAKIWK---DGVCVQ-SIEH-----PGCVWDAKFLE 277 (760)
Q Consensus 212 I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~----Dg~I~iwd---~~~~~~-~~~~-----~~~v~~v~~~~ 277 (760)
|.+||..+.....+......+..+....++ .+++++. .+..+||. .+.... .+.. .+....+.|+|
T Consensus 346 l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~ 425 (740)
T 4a5s_A 346 ICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK 425 (740)
T ss_dssp EEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECT
T ss_pred EEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECC
Confidence 888888877777776666666665532234 4445544 34455655 332222 3432 25788999999
Q ss_pred CCc-EEEEEcC---CcEEEEeCCCCeeech
Q 004329 278 NGD-IVTACSD---GVTRIWTVHSDKVADS 303 (760)
Q Consensus 278 ~g~-lvt~~~d---g~I~vw~~~~~~~~~~ 303 (760)
+|+ ++...+. ..+.+++..+++....
T Consensus 426 dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 426 EAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp TSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 999 4433332 4678888887765443
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.45 E-value=3.6e-12 Score=150.14 Aligned_cols=135 Identities=9% Similarity=0.007 Sum_probs=94.7
Q ss_pred CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCC-----eEEEEEeCCCCCCCCcEEEEEeCC--
Q 004329 20 DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSF-----VGPLAWISPNEEFPEGGLVSGGMD-- 91 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~~~~~l~sgs~d-- 91 (760)
....++.|+|++. ++++ ||+|++||+.+++ ....+.+|... ...+.|+|+++ .++.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Spdg~-----~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN-----SSVFLENSTFDEFGHSINDYSISPDGQ-----FILLEYNYVK 84 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC-----EEEEECTTTTTTCCSCCCEEEECTTSS-----EEEEEEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCc-----eEEEEechhhhhhcccccceEECCCCC-----EEEEEECCee
Confidence 3456899999999 5554 9999999999776 34445555432 34588999998 57777765
Q ss_pred -------CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-ceeEEe--ecCCcCe------
Q 004329 92 -------TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-KLVEFW--EAHNAPI------ 153 (760)
Q Consensus 92 -------g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-~~~~~~--~~~~~~v------ 153 (760)
+.+.+||+.+++.. .+..|...+...+|+ ++.|+.+ .|+.|++|+.. .....+ .++...+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred eEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence 66789999988754 466778889999998 4457666 57899999864 222222 2222222
Q ss_pred -----------EEEEEeCCCc-EEEEE
Q 004329 154 -----------QTVIRIPSGE-IVSGS 168 (760)
Q Consensus 154 -----------~~v~~~~~~~-l~tgs 168 (760)
..+.|+|||+ |+.++
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ccccchhcCCCcceEECCCCCEEEEEE
Confidence 3488999998 66554
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.44 E-value=1.7e-10 Score=121.52 Aligned_cols=227 Identities=14% Similarity=0.160 Sum_probs=164.5
Q ss_pred CCCEEEEEEcCCCe-EEEEECC------------------------CeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEE
Q 004329 19 EDDVRGICVCDNVG-IATSSRD------------------------RTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLA 72 (760)
Q Consensus 19 ~~~V~~v~~~~~~~-l~tgs~D------------------------g~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~ 72 (760)
-+.+.+|+++++|. +++.+.+ ++|.+||..+++ ..... .++-.....++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-----ILQSSGKNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-----EEEEECTTTCSSEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-----EEeccCCCccCCceEEE
Confidence 46799999999999 5555555 379999988665 22222 24456789999
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-eEEEE---------eCCCccEEEEEec--CCeEEEEE--CCCeEEEEE
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-KVQTL---------QGHKLQVTGVTLD--NEDIVSSS--VDSTLKRWR 138 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-~~~~l---------~~h~~~V~~l~~~--~~~l~sgs--~dg~v~vwd 138 (760)
+.+++. ++++...++.|++||..... .+..+ .++-.....++++ ++.++.+. .++.|++|+
T Consensus 98 ~d~~g~-----l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 98 IDTDGN-----YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp ECTTSC-----EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred ECCCCC-----EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 999887 57777888999999986442 45555 2445578899997 35555544 589999998
Q ss_pred CC-ceeEEeecC----------CcCeEEEEEeCC-CcE-EEEECCCcEEEEeCC--CceEEee--cCCCceEEEEEeCCC
Q 004329 139 KG-KLVEFWEAH----------NAPIQTVIRIPS-GEI-VSGSSDTTIKLWKGK--KCAQTFV--GHTDTVRGLSVMPGV 201 (760)
Q Consensus 139 ~~-~~~~~~~~~----------~~~v~~v~~~~~-~~l-~tgs~dg~i~iwd~~--~~~~~~~--~h~~~V~~l~~~~~~ 201 (760)
.. ..+..+... -.....+++.++ +.+ ++...++.|++||.. +....+. .+...+.+++++| +
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence 64 444444322 234789999998 774 566678899999964 4555553 4567889999999 4
Q ss_pred e-EEEEe-------CCCeEEEEec-CCceEEEe---ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 202 G-IISAS-------HDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 202 ~-l~s~s-------~dg~I~iwd~-~~~~~~~~---~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
. +.+.+ .+..|++||. +++.+..+ .++...+.+++++|+| ++++...++.|++|+
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 3 33332 3458999995 56666666 3577789999999999 888888999999998
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.41 E-value=1.3e-10 Score=123.03 Aligned_cols=248 Identities=9% Similarity=0.039 Sum_probs=166.1
Q ss_pred CCEEEEEEcCCCe-EEEEE---------CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 20 DDVRGICVCDNVG-IATSS---------RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs---------~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
..+....+ +|+ ++... .++.|.+|++.+++. ..+ ..+.+++|+|++. .|+.++
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l----~~~~~~~~SpDg~-----~la~~~ 77 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR------RFI----ENATMPRISPDGK-----KIAFMR 77 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------EEE----ESCEEEEECTTSS-----EEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce------EEc----ccCCCeEECCCCC-----EEEEEE
Confidence 45677777 555 54432 267899999986541 122 5688999999998 466555
Q ss_pred CC---C--eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC---------------------------CeEE
Q 004329 90 MD---T--MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD---------------------------STLK 135 (760)
Q Consensus 90 ~d---g--~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d---------------------------g~v~ 135 (760)
.+ + .|.+|++.+++.......+ . +.++.|+ ++.|+.++.+ ..|.
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 78 ANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred eccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 43 3 4888899888766555433 3 8899997 4557776632 5688
Q ss_pred EEECC--ceeEEeecCCcCeEEEEEeCCCcEE-EEECC---------CcEEEEeCCCceEEeecCCCceEEEEEeCCCe-
Q 004329 136 RWRKG--KLVEFWEAHNAPIQTVIRIPSGEIV-SGSSD---------TTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG- 202 (760)
Q Consensus 136 vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~-tgs~d---------g~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~- 202 (760)
+||.. +.+..+.. . .+..+.|+|+| ++ ++..+ ..|.++| ......+..+ ..+..+ +|++.
T Consensus 156 ~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--spdg~~ 228 (347)
T 2gop_A 156 IFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--DSDGER 228 (347)
T ss_dssp EEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--EECSSC
T ss_pred EEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeE--CCCCCE
Confidence 88874 33144444 3 78899999999 55 45443 2455566 4334445445 555554 88776
Q ss_pred EEEEeCC--------CeEEEEecCCceEEEeecCCCcEEE-EEEeCCCeEEEEeCCCcEEEE-eCCceEEEEecCCcEEE
Q 004329 203 IISASHD--------CTIRLWALTGQVLMEMVGHTAIVYS-IDSHASGLIVSGSEDRFAKIW-KDGVCVQSIEHPGCVWD 272 (760)
Q Consensus 203 l~s~s~d--------g~I~iwd~~~~~~~~~~~h~~~v~~-v~~~p~~~l~s~s~Dg~I~iw-d~~~~~~~~~~~~~v~~ 272 (760)
++.++.+ ..|.+|| .++......+|...+.. +.|+ ++.+++++.++.+++| +.+.......+.+.|.+
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~~~~g~~~~~~~~~~~v~~ 306 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMG 306 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEEEESSSEEEEECSSSEEEE
T ss_pred EEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEEEcCCceEEEecCCCeEEe
Confidence 7666644 4788888 66554444566778886 8998 7777888899999888 33455555557778999
Q ss_pred EEEccCCcEEEEEcCCcE-EEEeCC
Q 004329 273 AKFLENGDIVTACSDGVT-RIWTVH 296 (760)
Q Consensus 273 v~~~~~g~lvt~~~dg~I-~vw~~~ 296 (760)
++|+| .-+++++.++.. ++|.++
T Consensus 307 ~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS-SEEEEEECSSSCCEEEEES
T ss_pred eeeeC-cEEEEEcCCCChHHheEeC
Confidence 99999 446777777665 777776
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=2.7e-10 Score=117.91 Aligned_cols=236 Identities=13% Similarity=0.136 Sum_probs=166.2
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEE-CCCeEE
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSS-VDSTLK 135 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs-~dg~v~ 135 (760)
...+..+.....+++|+|++.. +++++..++.|..|+..++ ...+..+...+.+++++ ++.++.+. .++.|.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~----l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSA----VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTE----EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred EEEEecCCccccCCeEeCCCCE----EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 3455566778899999998863 4788888999999999877 56677778889999997 44555554 568999
Q ss_pred EEEC-CceeEEe-ecC----CcCeEEEEEeCCCcEEEE-----E-------------CCCcEEEEeCCCceEEeecCCCc
Q 004329 136 RWRK-GKLVEFW-EAH----NAPIQTVIRIPSGEIVSG-----S-------------SDTTIKLWKGKKCAQTFVGHTDT 191 (760)
Q Consensus 136 vwd~-~~~~~~~-~~~----~~~v~~v~~~~~~~l~tg-----s-------------~dg~i~iwd~~~~~~~~~~h~~~ 191 (760)
+||. ......+ ... ...+..+++.++|+++.+ + ..+.|..++.......+..+...
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~ 173 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVK 173 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSS
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCC
Confidence 9987 3222222 211 234567999999996653 2 13467777765555556667778
Q ss_pred eEEEEEeCCCe-EEEEeCCCeEEEEecC--Cce---EEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEE
Q 004329 192 VRGLSVMPGVG-IISASHDCTIRLWALT--GQV---LMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSI 264 (760)
Q Consensus 192 V~~l~~~~~~~-l~s~s~dg~I~iwd~~--~~~---~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~ 264 (760)
...++|+|++. +++.+.++.|.+|++. +.. ...+..+...+.+++++++|.+..+. ++.|.+|| .++.+..+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~ 252 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRV 252 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEE
Confidence 89999999877 6666678999999974 443 22333345567789999999444444 88899999 77777777
Q ss_pred ecCCcEEEEEE-ccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 265 EHPGCVWDAKF-LENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 265 ~~~~~v~~v~~-~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
..+..+.+++| .|+++ +++++.+ .+.-++..+.++.
T Consensus 253 ~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 253 LTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp ECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred ECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 74444999999 58887 6666554 5555666666543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=9.8e-11 Score=121.29 Aligned_cols=228 Identities=13% Similarity=0.038 Sum_probs=164.9
Q ss_pred EeEEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 11 LSSELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
....+..+.....+++|+|++. ++++..++.|..|+..++ ...+..+...+.++++++++. ++++.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~~~~dg~-----l~v~~ 86 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-------LSPEMHPSHHQNGHCLNKQGH-----LIACS 86 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-------EEEEESSCSSEEEEEECTTCC-----EEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-------eEEEECCCCCcceeeECCCCc-----EEEEe
Confidence 3455666778889999999987 778888999999998743 233445677899999999887 45555
Q ss_pred eCCCeEEEEECCCCceEEEEeCC----CccEEEEEec-CCe-EEE----EE-------------CCCeEEEEECCceeEE
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGH----KLQVTGVTLD-NED-IVS----SS-------------VDSTLKRWRKGKLVEF 145 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~~-~~~-l~s----gs-------------~dg~v~vwd~~~~~~~ 145 (760)
..++.|.+||..+++........ ...+..++++ ++. +++ |+ ..+.|..++.......
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 166 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSA 166 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEE
T ss_pred cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEE
Confidence 55789999999888765443221 1245567887 444 444 22 1346777776544555
Q ss_pred eecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCC---Cc---eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC
Q 004329 146 WEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGK---KC---AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT 218 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~---~~---~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~ 218 (760)
+..+......++++|+++ +++.+.++.|.+|+.. +. .+.+..+...+.++++.+++.+..+. ++.|.+||..
T Consensus 167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~ 245 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD 245 (296)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT
T ss_pred eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC
Confidence 566667788999999998 5555667899999854 22 23333355667889999988877777 8999999999
Q ss_pred CceEEEeecCCCcEEEEEE-eCCC-eEEEEeCCCcE
Q 004329 219 GQVLMEMVGHTAIVYSIDS-HASG-LIVSGSEDRFA 252 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~-~p~~-~l~s~s~Dg~I 252 (760)
++.+..+..+.. +.+++| .|++ .|++++.++..
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 998888887777 899999 4777 78888877533
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.40 E-value=6e-11 Score=125.70 Aligned_cols=228 Identities=11% Similarity=0.128 Sum_probs=149.5
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECC---Ce--EEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeC
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRD---RT--VRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWIS 75 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~D---g~--i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 75 (760)
+.||..+.+.. .+ ..+.+++|+|||+ |+.++.+ +. |.+|++.+++ .. .+..+.. +.+++|+|
T Consensus 46 ~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-----~~-~l~~~~~-~~~~~wsp 113 (347)
T 2gop_A 46 VIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-----SK-KILEAKN-IRSLEWNE 113 (347)
T ss_dssp EEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-----EE-EEEEESE-EEEEEECT
T ss_pred EEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-----eE-EEEcCCC-ccceeECC
Confidence 45555555432 23 5678899999998 7777654 33 7777877543 22 2222333 99999999
Q ss_pred CCCCCCCcEEEEEeC---------------------------CCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEE
Q 004329 76 PNEEFPEGGLVSGGM---------------------------DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVS 127 (760)
Q Consensus 76 ~~~~~~~~~l~sgs~---------------------------dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~s 127 (760)
++. .|+.++. ...|++||+.+++.+..+.. . .+..+.|+ ++.+++
T Consensus 114 dg~-----~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~ 186 (347)
T 2gop_A 114 DSR-----KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVN 186 (347)
T ss_dssp TSS-----EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEE
T ss_pred CCC-----EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEE
Confidence 997 4565543 25799999998877455544 3 67788887 335555
Q ss_pred EECCC---------eEEEEECCceeEEeecCCcCeEEEEEeCCCc-EEEEECC--------CcEEEEeCCCceEEe-ecC
Q 004329 128 SSVDS---------TLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSD--------TTIKLWKGKKCAQTF-VGH 188 (760)
Q Consensus 128 gs~dg---------~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~d--------g~i~iwd~~~~~~~~-~~h 188 (760)
++.++ .|.++| ......+..+ ..+..+ +|+|+ ++.++.+ ..|.+|| ......+ ..|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~ 261 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEV 261 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTC
T ss_pred EecccccccccccccEEEeC-CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccC
Confidence 55432 455557 4444444444 555554 88887 6666643 4688888 4333333 446
Q ss_pred CCceEE-EEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcE-EEEe
Q 004329 189 TDTVRG-LSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFA-KIWK 256 (760)
Q Consensus 189 ~~~V~~-l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I-~iwd 256 (760)
...+.. +.|+ ++.+++++.++.+++| +.......+..+...|.+++++| ..+++++.++.. .+|.
T Consensus 262 ~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 262 DRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFT 328 (347)
T ss_dssp CSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEE
T ss_pred CcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheE
Confidence 677886 8998 7667788999999999 75333345556678899999999 866666666654 6665
No 186
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=2.8e-11 Score=140.60 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=163.1
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEE--eCCCeEEEEECCCCceEEEEeCCCccEE---------EEEec----CC
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSG--GMDTMVLVWDLGSGEKVQTLQGHKLQVT---------GVTLD----NE 123 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg--s~dg~I~vwd~~~~~~~~~l~~h~~~V~---------~l~~~----~~ 123 (760)
..+.+|...+..++|+++.- +++.. +.++...+|....+.....+..|...+. ...|+ ++
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-----WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-----EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HHHhhcCCccceeEEcCCeE-----EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCC
Confidence 34567889999999997643 35555 4578899998655555666766665554 44332 66
Q ss_pred e-EEEEEC-CCeEEEEECC----ceeEEeec-----CCcCeEEEEEeCCCc-EEEEECC----------CcEEEEeCCC-
Q 004329 124 D-IVSSSV-DSTLKRWRKG----KLVEFWEA-----HNAPIQTVIRIPSGE-IVSGSSD----------TTIKLWKGKK- 180 (760)
Q Consensus 124 ~-l~sgs~-dg~v~vwd~~----~~~~~~~~-----~~~~v~~v~~~~~~~-l~tgs~d----------g~i~iwd~~~- 180 (760)
. ++.++. +..|.+|+.. .....+.. |...+.+++|+|+|+ +++++.+ ..|++||...
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 6 555543 5667777765 55666665 667889999999998 6666665 5899999654
Q ss_pred ------ceEEee-cCCCceEEEEEeCCCe-EEEEeCC--------CeEEEEecCC-c---eEEEe-ecCCCcEEEEEEeC
Q 004329 181 ------CAQTFV-GHTDTVRGLSVMPGVG-IISASHD--------CTIRLWALTG-Q---VLMEM-VGHTAIVYSIDSHA 239 (760)
Q Consensus 181 ------~~~~~~-~h~~~V~~l~~~~~~~-l~s~s~d--------g~I~iwd~~~-~---~~~~~-~~h~~~v~~v~~~p 239 (760)
....+. .+...+..++|+||++ ++.++.+ ..|++||+.+ . ....+ .+|...+..+.|+|
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 445555 6667888999999887 7666654 3799999873 2 33344 45678999999999
Q ss_pred CC-eEEEEeCCC--cEEEEe--CCceEEEEecCCc---------EEEEEEccCCc-EEEEEcCCcEEEE--eCCCCe
Q 004329 240 SG-LIVSGSEDR--FAKIWK--DGVCVQSIEHPGC---------VWDAKFLENGD-IVTACSDGVTRIW--TVHSDK 299 (760)
Q Consensus 240 ~~-~l~s~s~Dg--~I~iwd--~~~~~~~~~~~~~---------v~~v~~~~~g~-lvt~~~dg~I~vw--~~~~~~ 299 (760)
+| ++++++.++ .|.+|| .++..+...+... +.+++|+|++. +++++. +.+++| +..+++
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99 778888888 555566 4444433333221 56789999999 566666 999999 444444
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.40 E-value=2.5e-10 Score=120.20 Aligned_cols=230 Identities=5% Similarity=-0.018 Sum_probs=158.7
Q ss_pred eEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 10 QLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 10 ~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
+....+.+|...+.+++|++++. ++++..++.|.+||..++. .......+...+.++++++++. ++++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~i~~~~dg~-----l~v~~ 104 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----IKRPFVSHKANPAAIKIHKDGR-----LFVCY 104 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECSSSSEEEEEECTTSC-----EEEEE
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----EEEEeeCCCCCcceEEECCCCc-----EEEEe
Confidence 44566777888889999999999 5577889999999988654 2222234667899999999886 45555
Q ss_pred eCC----CeEEEEECCCCceEEEEe--CCCccEEEEEec-CCeEEEEECC-------CeEEEEECC-ceeEEeecCCcCe
Q 004329 89 GMD----TMVLVWDLGSGEKVQTLQ--GHKLQVTGVTLD-NEDIVSSSVD-------STLKRWRKG-KLVEFWEAHNAPI 153 (760)
Q Consensus 89 s~d----g~I~vwd~~~~~~~~~l~--~h~~~V~~l~~~-~~~l~sgs~d-------g~v~vwd~~-~~~~~~~~~~~~v 153 (760)
..+ +.|.+||..+++....+. .+...+.++.++ ++.++.++.. +.|..|+.. .....+..+...+
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 184 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA 184 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE
T ss_pred CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcc
Confidence 555 689999998877654443 344678899998 5555555543 556666654 2333333344457
Q ss_pred EEEEEeCCCc-EE-EEECCCcEEEEeCCC---ceEEe-----ecC--CCceEEEEEeCCCeE-EEEeCCCeEEEEecCCc
Q 004329 154 QTVIRIPSGE-IV-SGSSDTTIKLWKGKK---CAQTF-----VGH--TDTVRGLSVMPGVGI-ISASHDCTIRLWALTGQ 220 (760)
Q Consensus 154 ~~v~~~~~~~-l~-tgs~dg~i~iwd~~~---~~~~~-----~~h--~~~V~~l~~~~~~~l-~s~s~dg~I~iwd~~~~ 220 (760)
..++++|++. ++ +.+.++.|.+||... ....+ ... ...+..+++.+++.+ ++...++.|.+||.+++
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence 8899999987 54 445678999999632 22211 111 146788999998875 44556789999999888
Q ss_pred eEEEeecCCC------cEEEEEEeCCC-eEEEEeCC
Q 004329 221 VLMEMVGHTA------IVYSIDSHASG-LIVSGSED 249 (760)
Q Consensus 221 ~~~~~~~h~~------~v~~v~~~p~~-~l~s~s~D 249 (760)
.+..+..+.. .+.+++|+|++ .|+.++.+
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 7777765443 68899999997 66555544
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.40 E-value=1.7e-09 Score=121.85 Aligned_cols=293 Identities=10% Similarity=0.036 Sum_probs=198.1
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCC--CCCCccceeeeEeeCCCCCeEEEEEe---
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLD--PSDKRKYHSSKILLGHTSFVGPLAWI--- 74 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~--~~~~~~~~~~~~~~~h~~~V~~l~~~--- 74 (760)
|.++|..+++++.++... ..+.++.|+||++ +++++.|+.|.+||+. +.+ ....+... .....++|+
T Consensus 179 V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----~v~~i~~G-~~P~~ia~s~~~ 251 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----TVAEIKIG-SEARSIETSKME 251 (567)
T ss_dssp EEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----EEEEEECC-SEEEEEEECCST
T ss_pred EEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----EeEEEecC-CCCceeEEcccc
Confidence 356888999999988743 3567999999999 8889999999999995 343 33444433 346799999
Q ss_pred -CCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC-----------CccEEEEEec--CC-eEEEEECCCeEEEEEC
Q 004329 75 -SPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH-----------KLQVTGVTLD--NE-DIVSSSVDSTLKRWRK 139 (760)
Q Consensus 75 -~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h-----------~~~V~~l~~~--~~-~l~sgs~dg~v~vwd~ 139 (760)
|+++. .+++...++.|.++|..+.+.+..+... ...+..+..+ +. .++....+|.|.++|.
T Consensus 252 ~pDGk~----l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 252 GWEDKY----AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TCTTTE----EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred CCCCCE----EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 58873 2445556799999999999988876522 1256777765 22 3666667799999987
Q ss_pred Cce--eE-EeecCCcCeEEEEEeCCCc-EE-EEECCCcEEEEeCCCce--EEeec-----CCCceEEEEEeCC-CeEEEE
Q 004329 140 GKL--VE-FWEAHNAPIQTVIRIPSGE-IV-SGSSDTTIKLWKGKKCA--QTFVG-----HTDTVRGLSVMPG-VGIISA 206 (760)
Q Consensus 140 ~~~--~~-~~~~~~~~v~~v~~~~~~~-l~-tgs~dg~i~iwd~~~~~--~~~~~-----h~~~V~~l~~~~~-~~l~s~ 206 (760)
... .. ...........+.|+|+++ ++ +...++.|.++|..+.. ..+.. |.+.--.+ ++|+ +.+...
T Consensus 328 ~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 328 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred CCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEe
Confidence 532 11 1112344567889999998 43 44468899999966532 22222 33212122 5775 445443
Q ss_pred e--CCCeEEEEecCC--------ceEEEeecCCCcEEEEEEeCCC-eEEEEeC-------CCcEEEEe--CC------ce
Q 004329 207 S--HDCTIRLWALTG--------QVLMEMVGHTAIVYSIDSHASG-LIVSGSE-------DRFAKIWK--DG------VC 260 (760)
Q Consensus 207 s--~dg~I~iwd~~~--------~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~-------Dg~I~iwd--~~------~~ 260 (760)
+ .+++|.++|... +.++++......-..+..+|++ ++.+... .++|.++| +. ..
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~ 486 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE 486 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCC
Confidence 3 468999999753 5667776654444557789999 6666552 45899999 22 22
Q ss_pred EEEEe---------cCCcEEEEEEccCCc-E-EEEE----cCCcEEEEeCCCCeeechhh
Q 004329 261 VQSIE---------HPGCVWDAKFLENGD-I-VTAC----SDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 261 ~~~~~---------~~~~v~~v~~~~~g~-l-vt~~----~dg~I~vw~~~~~~~~~~~~ 305 (760)
...+. ....++.+.|+++|+ + ++.. .++.|.|+|..+.++...+.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 487 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 24442 134899999999999 4 4433 37999999999998876554
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=6.3e-09 Score=107.22 Aligned_cols=269 Identities=9% Similarity=-0.013 Sum_probs=183.2
Q ss_pred eccCCCCEEEEEEcCCCeEEEEE-CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 15 LRGHEDDVRGICVCDNVGIATSS-RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 15 l~gH~~~V~~v~~~~~~~l~tgs-~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
+......+.++++.+++.+..+. .++.|.+|+.. +.. .. ..+..+...+.++++.+++. +.++...++.
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---~~-~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~ 84 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---KE-FEVPTPDAKVMCLIVSSLGD-----IWFTENGANK 84 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---EE-EECSSTTCCEEEEEECTTSC-----EEEEETTTTE
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---EE-EECCCCCCcceeEEECCCCC-----EEEEecCCCe
Confidence 34556789999999999955554 67999999987 441 11 12233446789999988876 3455455788
Q ss_pred EEEEECCCCceEE-EEeCCCccEEEEEec-CCeEEEEE-CCCeEEEEECCceeEEee--cCCcCeEEEEEeCCCcEEEEE
Q 004329 94 VLVWDLGSGEKVQ-TLQGHKLQVTGVTLD-NEDIVSSS-VDSTLKRWRKGKLVEFWE--AHNAPIQTVIRIPSGEIVSGS 168 (760)
Q Consensus 94 I~vwd~~~~~~~~-~l~~h~~~V~~l~~~-~~~l~sgs-~dg~v~vwd~~~~~~~~~--~~~~~v~~v~~~~~~~l~tgs 168 (760)
|..||.. ++... .+......+.+++++ ++.++.+. .++.|..|+.......+. .....+.++++.+++.+..+.
T Consensus 85 v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 85 IGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp EEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred EEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 9999987 55432 223344678899987 45554444 478999998764333332 234578899999999866555
Q ss_pred C-CCcEEEEeCCCceEEee--cCCCceEEEEEeCCCeEEEEe-CCCeEEEEecCCceEEE-eecCCCcEEEEEEeCCC-e
Q 004329 169 S-DTTIKLWKGKKCAQTFV--GHTDTVRGLSVMPGVGIISAS-HDCTIRLWALTGQVLME-MVGHTAIVYSIDSHASG-L 242 (760)
Q Consensus 169 ~-dg~i~iwd~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~-~~~h~~~v~~v~~~p~~-~ 242 (760)
. ++.|..||.......+. .+...+.++++.+++.+..+. ..+.|.+||.++..... ...+...+.++++.++| +
T Consensus 164 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 164 NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEI 243 (300)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred cCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCE
Confidence 4 67899998744333333 344568999999887766555 46789999986665443 22345678999999999 5
Q ss_pred EEEEeCCCcEEEEeCCceEEEEe---cCCcEEEEEEccCCcEEEEEcCCcEEEEeC
Q 004329 243 IVSGSEDRFAKIWKDGVCVQSIE---HPGCVWDAKFLENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 243 l~s~s~Dg~I~iwd~~~~~~~~~---~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~ 295 (760)
.++...++.|..||....+..+. ....+.++++.++|.+..++.. .|..++.
T Consensus 244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 55555678999999333333443 2347889999999997777664 6666664
No 190
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=2.9e-11 Score=127.08 Aligned_cols=279 Identities=15% Similarity=0.031 Sum_probs=192.7
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCC
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEF 80 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 80 (760)
|+.+| .+.+.......+...+.++...+++.+..++.+ +..||. +++.. + .............+. ++
T Consensus 42 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~-~----~~~~~~~~~~~~~~~-~~--- 108 (330)
T 3hxj_A 42 LYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEK-W----RFDTKKAIVSDFTIF-ED--- 108 (330)
T ss_dssp TEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGG-G----GSCC-----CCEEEE-TT---
T ss_pred EEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEE-E----EEECCCCcccCceEE-CC---
Confidence 34567 667776666655666778888888887777665 888875 34311 1 111111112222222 32
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEE
Q 004329 81 PEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 81 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~ 158 (760)
.+..++.++.|..+|.. ++.......+...+.++..+ ++.++.++.++.+..+|.. +....+......+.++..
T Consensus 109 ---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 109 ---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp ---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEE
T ss_pred ---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEE
Confidence 48888889999999998 87777776666566666666 7778889999999999875 444555555556667777
Q ss_pred eCCCcEEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEE
Q 004329 159 IPSGEIVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 159 ~~~~~l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~ 237 (760)
.+++.+..++ +.+..+|.. +....+......+.++...+++.+..++.++.+..+|.+++.+..+......+.++..
T Consensus 185 d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (330)
T 3hxj_A 185 GKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVI 262 (330)
T ss_dssp CTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEE
T ss_pred cCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceE
Confidence 7788887777 888899832 2333444445668888888888888899999999999888887776655544455666
Q ss_pred eCCCeEEEEeCCCcEEEEe-CCceEEEEecCC-cEEEEEEccCCcEEEEEcCCcEEEEeCCCC
Q 004329 238 HASGLIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 238 ~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~ 298 (760)
.+++.+..++.+|.|..+| .++....+..+. .+.++...++|.+..++.+|.+++...+..
T Consensus 263 ~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 263 GNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred cCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 6677888888898899999 666666665443 667777778889999999999998876544
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.35 E-value=1.7e-10 Score=118.10 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=161.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCC-ccEEEEEec-CCeEEEEECCCeEEEEEC-CceeEEeecC-CcCeEEEEE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHK-LQVTGVTLD-NEDIVSSSVDSTLKRWRK-GKLVEFWEAH-NAPIQTVIR 158 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~V~~l~~~-~~~l~sgs~dg~v~vwd~-~~~~~~~~~~-~~~v~~v~~ 158 (760)
.++++++.++.|++||.++|+.+.++..+. ..+.++.+. ++.++. +.++.|..||. ++.+..+..+ ...+.++.+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccccccEE
Confidence 479999999999999999999999998776 467777776 444444 66888999987 5667777664 357888999
Q ss_pred eCCCcE-EEEEC-CCcEEEEeC-CCceEEee------cCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecC
Q 004329 159 IPSGEI-VSGSS-DTTIKLWKG-KKCAQTFV------GHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGH 228 (760)
Q Consensus 159 ~~~~~l-~tgs~-dg~i~iwd~-~~~~~~~~------~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h 228 (760)
.++|.+ ++.+. ++.+..+|. ++.+..+. .+....+.+++.+++. +++.+.++.|..||.+|+.+.++..+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~ 164 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS 164 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC
Confidence 999984 55565 677877874 33344433 1223455667777666 77788899999999999999888764
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecC-------CcEEEEEEccCCcEEEEEcCC---------c
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-------GCVWDAKFLENGDIVTACSDG---------V 289 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~-------~~v~~v~~~~~g~lvt~~~dg---------~ 289 (760)
...+++...++| .+++++.++.|..+| +++.+..+... ..+..++..++|.+++++.+| .
T Consensus 165 -~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~ 243 (276)
T 3no2_A 165 -GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH 243 (276)
T ss_dssp -SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC
T ss_pred -CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC
Confidence 445667888888 788888888999999 58998888622 137889999999976666544 3
Q ss_pred EEEEeC-CCCeeech
Q 004329 290 TRIWTV-HSDKVADS 303 (760)
Q Consensus 290 I~vw~~-~~~~~~~~ 303 (760)
.+++.+ .+++++.+
T Consensus 244 ~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 244 PQLVEIDSEGKVVWQ 258 (276)
T ss_dssp CSEEEECTTSBEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 357776 35555443
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.33 E-value=2e-10 Score=116.95 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=157.0
Q ss_pred CeEEEEEeCCCCCCCCcEEE-EEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCc-ee
Q 004329 67 FVGPLAWISPNEEFPEGGLV-SGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-LV 143 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~-sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-~~ 143 (760)
...++++.+++. +++ +.+.++.|.+|+..++........+...+.+++++ ++.++.+..++.|.+||... ..
T Consensus 25 ~p~~i~~~~~g~-----l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGN-----VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCC-----EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CccceEECCCCC-----EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence 678999999886 344 33678999999986554332222344567788887 44566666688999998753 23
Q ss_pred EEee-cCCcCeEEEEEeCCCcEEEE-ECCCcEEEEeCCCceEEee--cCCCceEEEEEeCCCeEE-EEeCCCeEEEEecC
Q 004329 144 EFWE-AHNAPIQTVIRIPSGEIVSG-SSDTTIKLWKGKKCAQTFV--GHTDTVRGLSVMPGVGII-SASHDCTIRLWALT 218 (760)
Q Consensus 144 ~~~~-~~~~~v~~v~~~~~~~l~tg-s~dg~i~iwd~~~~~~~~~--~h~~~V~~l~~~~~~~l~-s~s~dg~I~iwd~~ 218 (760)
..+. .....+..+++.++|.++.+ ..++.|.+|+.+....... .....+.++++.+++.++ +...++.|.+||..
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 3332 22357889999999986554 4678899998655433322 233467899999977744 44567899999987
Q ss_pred CceEEEee-cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe--cCCcEEEEEEccCCc-EEEEEcCCcEEE
Q 004329 219 GQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLENGD-IVTACSDGVTRI 292 (760)
Q Consensus 219 ~~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~--~~~~v~~v~~~~~g~-lvt~~~dg~I~v 292 (760)
+....... .+...+.+++++++| ++++...++.|.+|+ .+....... +...+.+++++++|. +++...++.|++
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 259 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEE
Confidence 76554432 334678999999998 666666788999999 333333333 234789999999999 556666999999
Q ss_pred EeCCCCee
Q 004329 293 WTVHSDKV 300 (760)
Q Consensus 293 w~~~~~~~ 300 (760)
|+....+.
T Consensus 260 ~~~~~~~~ 267 (270)
T 1rwi_B 260 LTSLEHHH 267 (270)
T ss_dssp ECCCGGGS
T ss_pred EcCCCccc
Confidence 99887654
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.32 E-value=9.3e-10 Score=115.86 Aligned_cols=258 Identities=7% Similarity=0.019 Sum_probs=173.9
Q ss_pred cccCCCceEeEEec------cCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC
Q 004329 3 DIDFKEYQLSSELR------GHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP 76 (760)
Q Consensus 3 ~~d~~~~~l~~~l~------gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 76 (760)
.+|..+.+....+. .......++++..+..+++...++.|.+||..+++ ....+. .......++++++
T Consensus 21 ~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-----~~~~i~-~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 21 YYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-----EVGRIT-GFTSPRYIHFLSD 94 (328)
T ss_dssp EEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-----EEEEEE-CCSSEEEEEEEET
T ss_pred EEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-----EEEEcC-CCCCCcEEEEeCC
Confidence 46777777665542 12345678887543336666678999999998776 333443 3467889999888
Q ss_pred CCCCCCcEEEEEe-CCCeEEEEECCCCceEEEEeCCC-----ccEEEEEecCCeEEEEEC--CCeEEEEECC--ceeEEe
Q 004329 77 NEEFPEGGLVSGG-MDTMVLVWDLGSGEKVQTLQGHK-----LQVTGVTLDNEDIVSSSV--DSTLKRWRKG--KLVEFW 146 (760)
Q Consensus 77 ~~~~~~~~l~sgs-~dg~I~vwd~~~~~~~~~l~~h~-----~~V~~l~~~~~~l~sgs~--dg~v~vwd~~--~~~~~~ 146 (760)
+. ++.+. .++.|.+||..+++....+.... .....++++++.++.+.+ ++.|.+||.. +....+
T Consensus 95 g~------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 95 EK------AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp TE------EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred Ce------EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 74 45444 89999999999998887776433 144566667777777764 8899999975 444444
Q ss_pred ecCCcCeEEEEEeCCCcEEEEECC-----------CcEEEEeCCC--ceEEeecC-CCceEEEEEeCCCe-EEEEeCCCe
Q 004329 147 EAHNAPIQTVIRIPSGEIVSGSSD-----------TTIKLWKGKK--CAQTFVGH-TDTVRGLSVMPGVG-IISASHDCT 211 (760)
Q Consensus 147 ~~~~~~v~~v~~~~~~~l~tgs~d-----------g~i~iwd~~~--~~~~~~~h-~~~V~~l~~~~~~~-l~s~s~dg~ 211 (760)
... .....+.+.++|+++.++.. +.|.++|..+ ....+... ......++++|++. ++++.. .
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D 245 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence 433 33467888999996655443 6899999654 33334322 24689999999655 555543 8
Q ss_pred EEEEecCCceEEE--e-ecCCCcEEEEEEeCC-C-eEEEE----eCCCcEEEEe-CCceEEEEecCCcEEEEEE
Q 004329 212 IRLWALTGQVLME--M-VGHTAIVYSIDSHAS-G-LIVSG----SEDRFAKIWK-DGVCVQSIEHPGCVWDAKF 275 (760)
Q Consensus 212 I~iwd~~~~~~~~--~-~~h~~~v~~v~~~p~-~-~l~s~----s~Dg~I~iwd-~~~~~~~~~~~~~v~~v~~ 275 (760)
|.+||.....+.. + ..+.....+++++|+ + .+++. ..++.|.+|| .++.+..+......+.++|
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESEEEEEE
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCcceEEE
Confidence 9999975433211 1 112467899999994 4 55555 5788999999 7888888875555666666
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.31 E-value=6.1e-11 Score=138.54 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=153.2
Q ss_pred cCCCCEEEEEEcCCCe-EE-----EEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 17 GHEDDVRGICVCDNVG-IA-----TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~-----tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+|...+.+++|+|||+ |+ .|+.+.+|++||+.+++... ...+... ....++|+|+++ .|+.++.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~--~~~~~~wspDg~-----~l~~~~~ 187 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGG--KYATPKWTPDSK-----GFYYEWL 187 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCC--TTCCCEECTTSS-----EEEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcc--cccceEEecCCC-----EEEEEEe
Confidence 4666799999999999 66 34445689999999776210 1111111 126799999998 5788877
Q ss_pred CCe-------------EEEEECCCCc----eEEEEeCCCccEEEEEec--CCeEEEEECCC----eEEEEECC-ceeEEe
Q 004329 91 DTM-------------VLVWDLGSGE----KVQTLQGHKLQVTGVTLD--NEDIVSSSVDS----TLKRWRKG-KLVEFW 146 (760)
Q Consensus 91 dg~-------------I~vwd~~~~~----~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg----~v~vwd~~-~~~~~~ 146 (760)
|.. |++|++.++. ++.....|...+.++.++ +++++.++.++ .|.+|+.. .....+
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l 267 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL 267 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence 765 9999998876 333334566678888887 55577777665 66677653 345555
Q ss_pred ecCCcCeEEEEEeCCCcEEEEEC----CCcEEEEeCCCce----EEeecC--CCceEEEEEeCCCeEEEEeCCCeEEEEe
Q 004329 147 EAHNAPIQTVIRIPSGEIVSGSS----DTTIKLWKGKKCA----QTFVGH--TDTVRGLSVMPGVGIISASHDCTIRLWA 216 (760)
Q Consensus 147 ~~~~~~v~~v~~~~~~~l~tgs~----dg~i~iwd~~~~~----~~~~~h--~~~V~~l~~~~~~~l~s~s~dg~I~iwd 216 (760)
..+...+....+. +|.++..+. ++.|.+||..... ..+..| ...+..++++.+..+++...|+..++|.
T Consensus 268 ~~~~~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 268 VKGVGAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EECSSCCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ecCCCceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 5565566666664 444555443 5789999965432 444443 4568888888443478888899888875
Q ss_pred --cCCceEEEeecC-CCcEEEEEEeCCC-eEE-EEe---CCCcEEEEe
Q 004329 217 --LTGQVLMEMVGH-TAIVYSIDSHASG-LIV-SGS---EDRFAKIWK 256 (760)
Q Consensus 217 --~~~~~~~~~~~h-~~~v~~v~~~p~~-~l~-s~s---~Dg~I~iwd 256 (760)
++++....+..+ ...+..+.++|++ .++ +.+ ..++|++||
T Consensus 347 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 347 ATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp EETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred EeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 457766666655 6678888889987 444 332 346799999
No 195
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=2.1e-10 Score=123.64 Aligned_cols=227 Identities=10% Similarity=-0.014 Sum_probs=145.7
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeC-C--CeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC-
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGM-D--TMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG- 140 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~-d--g~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~- 140 (760)
.+.+++|+|+++ .++.... + ..|.+||+.+++......++......+.|+ ++.|+.++.++.+++||..
T Consensus 37 ~~~~~~~SpdG~-----~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 37 YFYQKCFTQDGK-----KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp CTTSCCBCTTSC-----EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred eeecCcCCCCCC-----EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 367789999998 4555433 2 478899998887654433333223235565 6679899999999999874
Q ss_pred -ceeEEeecCCcCeEE-------------------EEEeCCCc-EEEE-----ECCCcEEEEeCCC-ceEEeecCCCceE
Q 004329 141 -KLVEFWEAHNAPIQT-------------------VIRIPSGE-IVSG-----SSDTTIKLWKGKK-CAQTFVGHTDTVR 193 (760)
Q Consensus 141 -~~~~~~~~~~~~v~~-------------------v~~~~~~~-l~tg-----s~dg~i~iwd~~~-~~~~~~~h~~~V~ 193 (760)
+.......+...... +.++|++. ++.+ ..+..|++||... ....+..+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 191 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLG 191 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccc
Confidence 333333333332212 23456655 2222 4566899999654 3334446777899
Q ss_pred EEEEeC-CCe-EEEEeCC------CeEEEEecCCceEEEeecCC--CcEEEEEEeCCC-eEEEEeCC-----CcEEEEe-
Q 004329 194 GLSVMP-GVG-IISASHD------CTIRLWALTGQVLMEMVGHT--AIVYSIDSHASG-LIVSGSED-----RFAKIWK- 256 (760)
Q Consensus 194 ~l~~~~-~~~-l~s~s~d------g~I~iwd~~~~~~~~~~~h~--~~v~~v~~~p~~-~l~s~s~D-----g~I~iwd- 256 (760)
.+.|+| ++. ++.++.+ ..|.+||+.+.....+..+. ..+..+.|+|+| .|+.++.+ +.|++||
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 999999 565 6665543 36888898776655555442 358889999999 66666543 4499999
Q ss_pred -CCceEEEEecCCcEEEEEEcc-CCc-EEEEE----------------cCCcEEEEeCCCCee
Q 004329 257 -DGVCVQSIEHPGCVWDAKFLE-NGD-IVTAC----------------SDGVTRIWTVHSDKV 300 (760)
Q Consensus 257 -~~~~~~~~~~~~~v~~v~~~~-~g~-lvt~~----------------~dg~I~vw~~~~~~~ 300 (760)
.+........+. .. +.|+| +|+ +++++ .++.|++||..+++.
T Consensus 272 ~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 272 ETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp TTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 444433333333 23 89999 999 44443 247899999887653
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.30 E-value=5.6e-10 Score=130.75 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=131.4
Q ss_pred cCCCCEEEEEEcCCCe-EEEEECCC-----eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 17 GHEDDVRGICVCDNVG-IATSSRDR-----TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~tgs~Dg-----~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+|...+.+++|+|||+ |+.++.++ .|++||+.+++.. . ..+.. ..+.+++|+|+++ .|+.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---~-~~~~~--~~~~~~~wspDg~-----~l~~~~~ 190 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---P-DVLER--VKFSCMAWTHDGK-----GMFYNAY 190 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---E-EEEEE--ECSCCEEECTTSS-----EEEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---c-ccccC--cccceEEEEeCCC-----EEEEEEE
Confidence 3545688999999999 66665443 8999999876521 1 11221 2266899999998 5777777
Q ss_pred CCe----------------EEEEECCCCce--EEEEe--CCCccEEEEEec--CCeEEEEEC-----CCeEEEEECCc--
Q 004329 91 DTM----------------VLVWDLGSGEK--VQTLQ--GHKLQVTGVTLD--NEDIVSSSV-----DSTLKRWRKGK-- 141 (760)
Q Consensus 91 dg~----------------I~vwd~~~~~~--~~~l~--~h~~~V~~l~~~--~~~l~sgs~-----dg~v~vwd~~~-- 141 (760)
++. |++|++.+++. ...+. .|...+..+.|+ +++++.++. +..+++||...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 655 88888877652 22222 244556667775 444555543 45677776532
Q ss_pred -------eeEEeecCCcCeEEEEEeCCCc-EEEEECC----CcEEEEeCCCc----eEEeecCCC--ceEEEEEeCCCe-
Q 004329 142 -------LVEFWEAHNAPIQTVIRIPSGE-IVSGSSD----TTIKLWKGKKC----AQTFVGHTD--TVRGLSVMPGVG- 202 (760)
Q Consensus 142 -------~~~~~~~~~~~v~~v~~~~~~~-l~tgs~d----g~i~iwd~~~~----~~~~~~h~~--~V~~l~~~~~~~- 202 (760)
....+..+...+.. .++++|. ++..+.+ +.|.+||.... .+.+..|.. .+.++++++++.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 34455555554444 3555554 4433332 24666765432 244444433 566667665554
Q ss_pred EEEEeCCCe--EEEEec-CCceEEEeecCCCcEEEEEEeCCC-eEE-EEe---CCCcEEEEe
Q 004329 203 IISASHDCT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGS---EDRFAKIWK 256 (760)
Q Consensus 203 l~s~s~dg~--I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~-~l~-s~s---~Dg~I~iwd 256 (760)
+++...|+. |.+|++ +++.+..+..+...+.++.++|++ .++ +.+ ..++|+.||
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 555556664 444555 455555555555666666666665 222 222 235566666
No 197
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.29 E-value=1.4e-11 Score=129.59 Aligned_cols=282 Identities=13% Similarity=-0.005 Sum_probs=188.1
Q ss_pred cccCCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCC
Q 004329 3 DIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPE 82 (760)
Q Consensus 3 ~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 82 (760)
..|.++.++..++..+.....+..+..++.+..++.++.|..|| .+++. ......+...+.++...+++.
T Consensus 3 ~~~~~~g~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~-----~~~~~~~~~~~~~~~~~~~g~---- 72 (330)
T 3hxj_A 3 RGGVNDCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSV-----KWFFKSGEIIECRPSIGKDGT---- 72 (330)
T ss_dssp ---------CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCE-----EESSCGGGEEEECCEETTTTE----
T ss_pred ccccCCceEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcE-----EEEEecCCCcccceEEecCCc----
Confidence 34556666666665554444455666778899999999999999 65652 112222334456666655553
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC-ceeEEeecCCcCeEEEEEeCC
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPS 161 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~ 161 (760)
+..++.+ |..+|. +++....+..+..........++.++.++.++.+..+|.. +.......+...+.++...++
T Consensus 73 --l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 73 --IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp --ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTT
T ss_pred --EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCC
Confidence 6666665 888886 5655444333322223333448889999999999999875 444555555555666777778
Q ss_pred CcEEEEECCCcEEEEeCC-CceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCC
Q 004329 162 GEIVSGSSDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 162 ~~l~tgs~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~ 240 (760)
+.++.++.++.+..||.. +....+......+.++...+++.+..++ +.|..+|.+++...........+.++...++
T Consensus 148 g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISED 225 (330)
T ss_dssp SCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTT
T ss_pred CEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCC
Confidence 889999999999999966 2333444455667777777777777777 8899999777777777666677888888888
Q ss_pred CeEEEEeCCCcEEEEe-CCceEEEEecCC-cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 241 GLIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 241 ~~l~s~s~Dg~I~iwd-~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
|.+..++.++.+..+| .+..+..+.... .+.++.+.++|.+..++.+|.|..+|. +++...
T Consensus 226 g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 226 GTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp SCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEE
T ss_pred CeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEE
Confidence 8788888888899998 566666665433 344566667888999999999999996 565544
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.27 E-value=3.1e-09 Score=110.57 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=160.4
Q ss_pred eCCCCCeEEEEEeCCCCCCCCcEEEE-------EeCCCeEEEEECCCCceEEEEe----CCCccEEEEEec-C-CeEEEE
Q 004329 62 LGHTSFVGPLAWISPNEEFPEGGLVS-------GGMDTMVLVWDLGSGEKVQTLQ----GHKLQVTGVTLD-N-EDIVSS 128 (760)
Q Consensus 62 ~~h~~~V~~l~~~~~~~~~~~~~l~s-------gs~dg~I~vwd~~~~~~~~~l~----~h~~~V~~l~~~-~-~~l~sg 128 (760)
...-....+++|.+++. ++++ +..++.|.+||..+++...... ++...+.++.++ + +.++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~-----l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp ECCCTTCEEEEECTTSC-----EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred hccCCCccCceECCCCC-----EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 34445678999998776 3455 4778999999988877643322 245678899997 4 677777
Q ss_pred ECCCeEEEEECCceeEEe-ec-----CCcCeEEEEEeCCCcEEEEEC-C---------------CcEEEEeCCCceEEee
Q 004329 129 SVDSTLKRWRKGKLVEFW-EA-----HNAPIQTVIRIPSGEIVSGSS-D---------------TTIKLWKGKKCAQTFV 186 (760)
Q Consensus 129 s~dg~v~vwd~~~~~~~~-~~-----~~~~v~~v~~~~~~~l~tgs~-d---------------g~i~iwd~~~~~~~~~ 186 (760)
+..+.|.+||.......+ .. +...+.++++.++|.++.++. + +.|..|+.......+.
T Consensus 89 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 168 (314)
T 1pjx_A 89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD 168 (314)
T ss_dssp ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE
T ss_pred ECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEec
Confidence 777789999876333333 21 123578999999999665554 3 4677777554344444
Q ss_pred cCCCceEEEEEe----CCCe-EE-EEeCCCeEEEEecC--Cc-----eEEEeecCC-CcEEEEEEeCCC-eEEEEeCCCc
Q 004329 187 GHTDTVRGLSVM----PGVG-II-SASHDCTIRLWALT--GQ-----VLMEMVGHT-AIVYSIDSHASG-LIVSGSEDRF 251 (760)
Q Consensus 187 ~h~~~V~~l~~~----~~~~-l~-s~s~dg~I~iwd~~--~~-----~~~~~~~h~-~~v~~v~~~p~~-~l~s~s~Dg~ 251 (760)
.+......++++ |++. ++ +...++.|.+||.. +. ....+.++. ..+..++++++| ++++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 444567899999 9874 44 44568999999964 33 222333343 668899999999 6666667889
Q ss_pred EEEEe-C-CceEEEEecC-CcEEEEEEccCCc-EEEEE-cCCcEEEEeCCC
Q 004329 252 AKIWK-D-GVCVQSIEHP-GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHS 297 (760)
Q Consensus 252 I~iwd-~-~~~~~~~~~~-~~v~~v~~~~~g~-lvt~~-~dg~I~vw~~~~ 297 (760)
|.+|| . ++.+..+..+ ..+.+++|+++|+ +++++ .++.|..|+...
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999 3 5666666644 6899999999998 65554 468999999875
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.26 E-value=2.5e-09 Score=125.23 Aligned_cols=230 Identities=9% Similarity=0.039 Sum_probs=158.9
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeC-CC----eEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCCe--
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGM-DT----MVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDST-- 133 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~-dg----~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~-- 133 (760)
+|...+..++|+|+++ +|+.+.. +| .|++||+.+++.......+ ..+.+++|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~-----~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGE-----YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSS-----EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCC-----EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccc
Confidence 3445688999999998 4555543 33 8999999999876543222 225678887 556888888766
Q ss_pred --------------EEEEECCce----eEEeec--CCcCeEEEEEeCCCc-EEEEEC-----CCcEEEEeCCC-------
Q 004329 134 --------------LKRWRKGKL----VEFWEA--HNAPIQTVIRIPSGE-IVSGSS-----DTTIKLWKGKK------- 180 (760)
Q Consensus 134 --------------v~vwd~~~~----~~~~~~--~~~~v~~v~~~~~~~-l~tgs~-----dg~i~iwd~~~------- 180 (760)
|++|+.+.. ...+.. |...+..+.|+|+|+ ++.++. +..|++||...
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999998632 233333 455578899999998 444443 56899999643
Q ss_pred --ceEEeecCCCceEEEEEeC-CCeEEEEeCC----CeEEEEecCCc---eEEEeecCCC--cEEEEEEeCCC-eEEEEe
Q 004329 181 --CAQTFVGHTDTVRGLSVMP-GVGIISASHD----CTIRLWALTGQ---VLMEMVGHTA--IVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 181 --~~~~~~~h~~~V~~l~~~~-~~~l~s~s~d----g~I~iwd~~~~---~~~~~~~h~~--~v~~v~~~p~~-~l~s~s 247 (760)
....+..+...+... +++ ++.++..+++ +.|.+||+.+. ....+..|.. .+.++.+++++ ++++..
T Consensus 276 ~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 456777777766654 666 4456555543 36999998653 2355666654 68889999777 888888
Q ss_pred CCCcE--EEEe--CCceEEEEe-cCCcEEEEEEccCCc-EE-EEEc---CCcEEEEeCCCCe
Q 004329 248 EDRFA--KIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IV-TACS---DGVTRIWTVHSDK 299 (760)
Q Consensus 248 ~Dg~I--~iwd--~~~~~~~~~-~~~~v~~v~~~~~g~-lv-t~~~---dg~I~vw~~~~~~ 299 (760)
.|+.. .+|+ .+...+.+. +.+.+..++++|+++ ++ +.++ .+.|..||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88854 5556 566666676 556889999999987 43 3333 5899999998876
No 200
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=2.7e-09 Score=114.58 Aligned_cols=279 Identities=10% Similarity=0.027 Sum_probs=178.2
Q ss_pred ccccCCCceEeEEeccC---------CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEE
Q 004329 2 MDIDFKEYQLSSELRGH---------EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLA 72 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH---------~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~ 72 (760)
+.+|..+.+...+.... ...+.+.-...++.++.++.++.|..+|..+++. ...............
T Consensus 66 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~-----~W~~~~~~~~~~~p~ 140 (376)
T 3q7m_A 66 KALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTV-----AWQTKVAGEALSRPV 140 (376)
T ss_dssp EEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCE-----EEEEECSSCCCSCCE
T ss_pred EEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCE-----EEEEeCCCceEcCCE
Confidence 45677778877766643 2334443334567788999999999999988762 222222211111111
Q ss_pred EeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccE-----EEEEecCCeEEEEECCCeEEEEECC--ceeEE
Q 004329 73 WISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQV-----TGVTLDNEDIVSSSVDSTLKRWRKG--KLVEF 145 (760)
Q Consensus 73 ~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~ 145 (760)
.. + +.++.++.++.|..+|..+++.+.......... ......++.++.++.++.+..+|.. +.+..
T Consensus 141 ~~-~------~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~ 213 (376)
T 3q7m_A 141 VS-D------GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQ 213 (376)
T ss_dssp EE-T------TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEE
T ss_pred EE-C------CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 11 2 258889999999999999999888776433221 2233447789999999999999864 44444
Q ss_pred eecCCcC----------eEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEE
Q 004329 146 WEAHNAP----------IQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLW 215 (760)
Q Consensus 146 ~~~~~~~----------v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iw 215 (760)
....... +.......++.++.++.++.+..+|..+..............+... ++.++.++.++.+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 214 QRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD-GNRIYLVDQNDRVMAL 292 (376)
T ss_dssp EECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE-TTEEEEEETTCCEEEE
T ss_pred EecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE-CCEEEEEcCCCeEEEE
Confidence 3322100 1111112256688888899999999765444444333445555544 6778889999999999
Q ss_pred ec-CCceEEEeecC-CCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEec-CCcEEEEEEccCCcEEEEEcCCcE
Q 004329 216 AL-TGQVLMEMVGH-TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH-PGCVWDAKFLENGDIVTACSDGVT 290 (760)
Q Consensus 216 d~-~~~~~~~~~~h-~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~-~~~v~~v~~~~~g~lvt~~~dg~I 290 (760)
|. +++.+...... ...+...... ++.++.++.+|.++++| +++.+..... ...+.+.....++.++.++.+|.|
T Consensus 293 d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 293 TIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTV 371 (376)
T ss_dssp ETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCE
T ss_pred ECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEE
Confidence 96 56666655422 2222222332 45888899999999999 7777777664 334433223346779999999999
Q ss_pred EEEe
Q 004329 291 RIWT 294 (760)
Q Consensus 291 ~vw~ 294 (760)
..|+
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.25 E-value=7.6e-10 Score=112.55 Aligned_cols=224 Identities=9% Similarity=0.034 Sum_probs=153.7
Q ss_pred CEEEEEEcCCCeEEE-E-ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 21 DVRGICVCDNVGIAT-S-SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 21 ~V~~v~~~~~~~l~t-g-s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
...++++++++.+.. + +.++.|.+|+..+... ......+...+.++++.+++. ++.+..++.|.+||
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~------l~v~~~~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----TVLPFNGLYQPQGLAVDGAGT------VYVTDFNNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTTCC------EEEEETTTEEEEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----ceEeeCCcCCcceeEECCCCC------EEEEcCCCEEEEEe
Confidence 788999999999444 4 6789999999764331 111123345678899998876 44444488999999
Q ss_pred CCCCceEEEEe-CCCccEEEEEec-CCe-EEEEECCCeEEEEECCceeEEee--cCCcCeEEEEEeCCCcEEEEE-CCCc
Q 004329 99 LGSGEKVQTLQ-GHKLQVTGVTLD-NED-IVSSSVDSTLKRWRKGKLVEFWE--AHNAPIQTVIRIPSGEIVSGS-SDTT 172 (760)
Q Consensus 99 ~~~~~~~~~l~-~h~~~V~~l~~~-~~~-l~sgs~dg~v~vwd~~~~~~~~~--~~~~~v~~v~~~~~~~l~tgs-~dg~ 172 (760)
....... .+. .....+.+++++ ++. +++...++.|.+|+.+....... .....+.++++.+++.++.+. .++.
T Consensus 94 ~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 172 (270)
T 1rwi_B 94 AGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR 172 (270)
T ss_dssp TTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred CCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE
Confidence 8765443 333 333678899997 444 44555678999998764433322 223467789999998865554 5789
Q ss_pred EEEEeCCCceEEe--ecCCCceEEEEEeCCCeEE-EEeCCCeEEEEecCCceEEEee-cCCCcEEEEEEeCCC-eEEEEe
Q 004329 173 IKLWKGKKCAQTF--VGHTDTVRGLSVMPGVGII-SASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 173 i~iwd~~~~~~~~--~~h~~~V~~l~~~~~~~l~-s~s~dg~I~iwd~~~~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s 247 (760)
|.+||........ ..+...+.++++.+++.++ +...++.|.+||..+....... .+...+.+++++++| ++++..
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 9999965433322 2233678999999987754 4456789999998776554433 334678999999999 778888
Q ss_pred CCCcEEEEe
Q 004329 248 EDRFAKIWK 256 (760)
Q Consensus 248 ~Dg~I~iwd 256 (760)
.++.|++++
T Consensus 253 ~~~~v~~~~ 261 (270)
T 1rwi_B 253 GNDRVVKLT 261 (270)
T ss_dssp GGTEEEEEC
T ss_pred CCCEEEEEc
Confidence 899999998
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.25 E-value=4e-09 Score=107.85 Aligned_cols=205 Identities=9% Similarity=0.041 Sum_probs=147.5
Q ss_pred cCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCC-CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE
Q 004329 28 CDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT-SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ 106 (760)
Q Consensus 28 ~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 106 (760)
+|+..|++++.|+.|.+||..+++ ....+..+. ..+.++.++|++. +++ +.++.|..||. +++.+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~-----~~w~~~~~~~~~~~~~~~~pdG~-----ilv--s~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKE-----IVWEYPLEKGWECNSVAATKAGE-----ILF--SYSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTE-----EEEEEECCTTCCCCEEEECTTSC-----EEE--ECBSEEEEECT-TSCEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCe-----EEEEeCCCccCCCcCeEECCCCC-----EEE--eCCCCEEEECC-CCCEEE
Confidence 355459999999999999997776 455555554 4788999999987 345 56788999999 899999
Q ss_pred EEeCCC-ccEEEEEec--CCeEEEEEC-CCeEEEEEC-CceeEEeec------CCcCeEEEEEeCCCc-EEEEECCCcEE
Q 004329 107 TLQGHK-LQVTGVTLD--NEDIVSSSV-DSTLKRWRK-GKLVEFWEA------HNAPIQTVIRIPSGE-IVSGSSDTTIK 174 (760)
Q Consensus 107 ~l~~h~-~~V~~l~~~--~~~l~sgs~-dg~v~vwd~-~~~~~~~~~------~~~~v~~v~~~~~~~-l~tgs~dg~i~ 174 (760)
.+..+. ..+.++.+. ++.+++.+. ++.+..++. ++.+..+.. +......+...++|. +++.+.++.|.
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence 988653 467777775 556777776 777887876 355555431 222345567788887 56777899999
Q ss_pred EEeCC-CceEEeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecC-CceEEEeecCC------CcEEEEEEeCCC-eEE
Q 004329 175 LWKGK-KCAQTFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALT-GQVLMEMVGHT------AIVYSIDSHASG-LIV 244 (760)
Q Consensus 175 iwd~~-~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~-~~~~~~~~~h~------~~v~~v~~~p~~-~l~ 244 (760)
.||.. +.+..+..+ ..+.++...+++. +++++.++.|..+|.. |+.+.++..+. ..+.++...++| .++
T Consensus 150 ~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 150 EIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp EECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred EECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 99965 344455443 4566777788766 6666777789999987 99988886432 347888889999 544
Q ss_pred EE
Q 004329 245 SG 246 (760)
Q Consensus 245 s~ 246 (760)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.22 E-value=3.1e-09 Score=111.87 Aligned_cols=255 Identities=7% Similarity=-0.002 Sum_probs=167.3
Q ss_pred CCeEEEEeCCCCCCccceeee-EeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEE
Q 004329 39 DRTVRFWSLDPSDKRKYHSSK-ILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTG 117 (760)
Q Consensus 39 Dg~i~iWd~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~ 117 (760)
+++|.+||..+++........ .-.........+.+.. +. ++++...++.|.+||..+++.+.++. .......
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-----lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~ 88 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-----GWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRY 88 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-----EEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-----EEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcE
Confidence 899999999876521110000 0011234567787743 22 45666668999999999999988886 3466788
Q ss_pred EEec-CCeEEEEE-CCCeEEEEECC--ceeEEeecCC-----cCeEEEEEeCCCcEEEEE--CCCcEEEEeCCC--ceEE
Q 004329 118 VTLD-NEDIVSSS-VDSTLKRWRKG--KLVEFWEAHN-----APIQTVIRIPSGEIVSGS--SDTTIKLWKGKK--CAQT 184 (760)
Q Consensus 118 l~~~-~~~l~sgs-~dg~v~vwd~~--~~~~~~~~~~-----~~v~~v~~~~~~~l~tgs--~dg~i~iwd~~~--~~~~ 184 (760)
++++ ++.++.+. .++.|.+||.. +....+.... .....+++ .+++++++. .++.|.+||..+ ....
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 8884 66776666 89999999975 3334444322 13445666 456666555 488999999654 3334
Q ss_pred eecCCCceEEEEEeCCCeEEEEeC-C----------CeEEEEecC-CceEEEeecC-CCcEEEEEEeCCC-eEEEEeCCC
Q 004329 185 FVGHTDTVRGLSVMPGVGIISASH-D----------CTIRLWALT-GQVLMEMVGH-TAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 185 ~~~h~~~V~~l~~~~~~~l~s~s~-d----------g~I~iwd~~-~~~~~~~~~h-~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
+.. ......+.++|+++++.++. + +.|.++|.. ++....+... ......++++|++ .++++..
T Consensus 168 i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 168 LTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp EEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred EEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 433 23456888999888555544 3 689999975 4444455422 3468999999988 6666544
Q ss_pred cEEEEe--CCceEE--EEec-CCcEEEEEEcc-CCcEEEE-----EcCCcEEEEeCCCCeeechhh
Q 004329 251 FAKIWK--DGVCVQ--SIEH-PGCVWDAKFLE-NGDIVTA-----CSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 251 ~I~iwd--~~~~~~--~~~~-~~~v~~v~~~~-~g~lvt~-----~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.|.+|| .++... .+.. ......++++| ++.+.++ ..++.|.+|+.+ ++.+..+.
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 899999 333321 1122 35789999999 5555444 468999999998 87766553
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.22 E-value=1.5e-09 Score=126.71 Aligned_cols=230 Identities=12% Similarity=0.021 Sum_probs=157.1
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEE-----EEeCCCeEEEEECCCCceEEEEeCCCccE--EEEEec--CCeEEEEECCCe
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLV-----SGGMDTMVLVWDLGSGEKVQTLQGHKLQV--TGVTLD--NEDIVSSSVDST 133 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~-----sgs~dg~I~vwd~~~~~~~~~l~~h~~~V--~~l~~~--~~~l~sgs~dg~ 133 (760)
+|...+.+++|+|+++ +|+ .|+.+..|++||+.+++.+. ..+...+ ..++|+ +..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~-----~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-----KVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSS-----EEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCC-----EEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCC
Confidence 4566799999999998 455 23344689999999987641 1122222 567886 556888888776
Q ss_pred -------------EEEEECCce----eEEee--cCCcCeEEEEEeCCCc-EEEEECCC----cEEEEeCC-CceEEeecC
Q 004329 134 -------------LKRWRKGKL----VEFWE--AHNAPIQTVIRIPSGE-IVSGSSDT----TIKLWKGK-KCAQTFVGH 188 (760)
Q Consensus 134 -------------v~vwd~~~~----~~~~~--~~~~~v~~v~~~~~~~-l~tgs~dg----~i~iwd~~-~~~~~~~~h 188 (760)
|++|+.+.. ...+. .|...+..+.++|+|+ ++.++.++ .|++|+.. ...+.+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 999998632 22333 3456788999999998 65555554 67777643 345566667
Q ss_pred CCceEEEEEeCCCeEEEEeC----CCeEEEEecCCce---EEEeecC--CCcEEEEEEeCCCeEEEEeCCCcEEEEe---
Q 004329 189 TDTVRGLSVMPGVGIISASH----DCTIRLWALTGQV---LMEMVGH--TAIVYSIDSHASGLIVSGSEDRFAKIWK--- 256 (760)
Q Consensus 189 ~~~V~~l~~~~~~~l~s~s~----dg~I~iwd~~~~~---~~~~~~h--~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--- 256 (760)
...+....+..++ ++..++ ++.|.+||+.+.. ...+..| ...+.+++++.+.++++...|+..++|.
T Consensus 271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 6667776665555 555554 5889999985432 2444444 4568888888333888899999988886
Q ss_pred CCceEEEEec--CCcEEEEEEccCCc-EE-EEEc---CCcEEEEeCCCCee
Q 004329 257 DGVCVQSIEH--PGCVWDAKFLENGD-IV-TACS---DGVTRIWTVHSDKV 300 (760)
Q Consensus 257 ~~~~~~~~~~--~~~v~~v~~~~~g~-lv-t~~~---dg~I~vw~~~~~~~ 300 (760)
.+...+.+.. .+.+..++++|+++ ++ +.++ .+.|++||+.+++.
T Consensus 350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 350 KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4666666653 45788899999987 44 3333 57899999988763
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=4.3e-09 Score=109.49 Aligned_cols=233 Identities=9% Similarity=0.026 Sum_probs=154.9
Q ss_pred ccCCCCEEEEEEcCCCeE-EE-------EECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCC-CCCCCCcEEE
Q 004329 16 RGHEDDVRGICVCDNVGI-AT-------SSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISP-NEEFPEGGLV 86 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~l-~t-------gs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~~~~~l~ 86 (760)
...-....+++|++++.+ ++ ++.++.|.+||..+++...+. .....++...+.++++.++ +. ++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~g~------l~ 86 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-KPEVNGYGGIPAGCQCDRDANQ------LF 86 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE-CCEETTEECCEEEEEECSSSSE------EE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-ecccCCCCCCCceEEEecCCCc------EE
Confidence 444456789999999884 44 477899999998766521110 0001124567899999988 54 56
Q ss_pred EEeCCCeEEEEECCCCceEEE-EeC----CCccEEEEEec-CCeEEEEEC-C---------------CeEEEEECCceeE
Q 004329 87 SGGMDTMVLVWDLGSGEKVQT-LQG----HKLQVTGVTLD-NEDIVSSSV-D---------------STLKRWRKGKLVE 144 (760)
Q Consensus 87 sgs~dg~I~vwd~~~~~~~~~-l~~----h~~~V~~l~~~-~~~l~sgs~-d---------------g~v~vwd~~~~~~ 144 (760)
.++..+.|.+||.+ ++.... ... +...+.+++++ ++.++.++. + +.|..|+......
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 165 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI 165 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE
T ss_pred EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE
Confidence 66666689999998 765433 221 12357888887 445554443 3 5677777653333
Q ss_pred EeecCCcCeEEEEEe----CCCc-EEEE-ECCCcEEEEeCC-Cc-------eEEeecCC-CceEEEEEeCCCeEE-EEeC
Q 004329 145 FWEAHNAPIQTVIRI----PSGE-IVSG-SSDTTIKLWKGK-KC-------AQTFVGHT-DTVRGLSVMPGVGII-SASH 208 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~----~~~~-l~tg-s~dg~i~iwd~~-~~-------~~~~~~h~-~~V~~l~~~~~~~l~-s~s~ 208 (760)
.+..+......++++ +++. ++.+ ..++.|.+||.. .. ...+..+. ..+..+++.+++.+. +...
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 333344456788999 9985 5444 567899999843 11 11222333 568899999988754 4557
Q ss_pred CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC-eEEEE-eCCCcEEEEe
Q 004329 209 DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK 256 (760)
Q Consensus 209 dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~-~l~s~-s~Dg~I~iwd 256 (760)
++.|.+||.. ++.+..+..+...+.+++++|++ .|+.+ ..++.|..|+
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 8899999987 77777777777889999999998 45544 4567898888
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.20 E-value=7.1e-08 Score=99.16 Aligned_cols=226 Identities=8% Similarity=0.011 Sum_probs=158.4
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEE-EeCCCccEEEEEec-CCeEEEEE-CCCeEEEEEC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQT-LQGHKLQVTGVTLD-NEDIVSSS-VDSTLKRWRK 139 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~~-~~~l~sgs-~dg~v~vwd~ 139 (760)
.+...+.++++.+++. ++++...++.|.+||.. ++.... ...+...+.+++++ ++.++.+. .++.|..|+.
T Consensus 12 ~~~~~~~~i~~d~~g~-----l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGK-----VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SSSCCEEEEEECTTSC-----EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CcCCCccceEECCCCC-----EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3456789999998887 34444447899999988 554332 23355778999997 44555554 4788999987
Q ss_pred CceeEEee--cCCcCeEEEEEeCCCcEEEEE-CCCcEEEEeCCCceEEee--cCCCceEEEEEeCCCeEEEEe-CCCeEE
Q 004329 140 GKLVEFWE--AHNAPIQTVIRIPSGEIVSGS-SDTTIKLWKGKKCAQTFV--GHTDTVRGLSVMPGVGIISAS-HDCTIR 213 (760)
Q Consensus 140 ~~~~~~~~--~~~~~v~~v~~~~~~~l~tgs-~dg~i~iwd~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s-~dg~I~ 213 (760)
......+. .....+.++++.+++.++.+. .++.|..||.......+. .+...+.++++.+++.+..+. .++.|.
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 64444443 245578899999999866554 578899999744333332 244678999999987755544 578999
Q ss_pred EEecCCceEEE-eecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEe---cCCcEEEEEEccCCcEEEEE-c
Q 004329 214 LWALTGQVLME-MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWDAKFLENGDIVTAC-S 286 (760)
Q Consensus 214 iwd~~~~~~~~-~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~---~~~~v~~v~~~~~g~lvt~~-~ 286 (760)
.||.+++.... ...+...+.++++.+++ +.++...++.|.+|| .+.. ..+. +...+.++++.++|.+..+. .
T Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 166 RITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEI-TEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp EECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-EEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcE-EEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 99986554432 22345678899999998 555555678899999 4443 3343 23578999999999966665 6
Q ss_pred CCcEEEEeC
Q 004329 287 DGVTRIWTV 295 (760)
Q Consensus 287 dg~I~vw~~ 295 (760)
++.|..|+.
T Consensus 245 ~~~i~~~d~ 253 (299)
T 2z2n_A 245 ANKIGRLTS 253 (299)
T ss_dssp TTEEEEEET
T ss_pred CceEEEECC
Confidence 789999997
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.18 E-value=4.4e-09 Score=111.35 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=164.2
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEeeCC-----
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILLGH----- 64 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~h----- 64 (760)
|.++|..+++.+.++..-..+ . ++++|||+ ++.++ .++.|.+||..+.+ ....+.-.
T Consensus 61 V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-----v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-----PTADIELPDAPRF 133 (386)
T ss_dssp EEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-----EEEEEEETTCCCC
T ss_pred EEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe-----EEEEEECCCcccc
Confidence 356788999999999865555 4 99999999 65554 46889999998765 33333211
Q ss_pred --CCCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEEEECCCCceEEEEeCCCccEEEEEe-cCCeEEEEECCCeEEEEEC
Q 004329 65 --TSFVGPLAWISPNEEFPEGGLVSGGM--DTMVLVWDLGSGEKVQTLQGHKLQVTGVTL-DNEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 65 --~~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg~v~vwd~ 139 (760)
...-..++|+|+++ +++++.. ++.|.++|+.+++.+.++..... ..+.- ....+++.+.||.+.+.+.
T Consensus 134 ~~g~~P~~~a~spDGk-----~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGK-----TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CBSCCGGGEEECTTSS-----EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ccCCCCceEEEcCCCC-----EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEEC
Confidence 12455789999998 4666653 68999999999999988864321 12222 2556889999999888876
Q ss_pred Cc---eeEEeecC----CcCeE-EEEEe-CCCcEEEEECCCcEEEEeCCCce----EEee---------c-CCCceEEEE
Q 004329 140 GK---LVEFWEAH----NAPIQ-TVIRI-PSGEIVSGSSDTTIKLWKGKKCA----QTFV---------G-HTDTVRGLS 196 (760)
Q Consensus 140 ~~---~~~~~~~~----~~~v~-~v~~~-~~~~l~tgs~dg~i~iwd~~~~~----~~~~---------~-h~~~V~~l~ 196 (760)
+. .......+ ..++. ...|. ++|+++..+.+|.+++.|..... ..+. + .......++
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 42 22111111 11221 12443 56776667778888888864321 1111 0 112334466
Q ss_pred EeCCCe-EEEEeC----------CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC--eEEEE-eCCCcEEEEe--CCc
Q 004329 197 VMPGVG-IISASH----------DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG--LIVSG-SEDRFAKIWK--DGV 259 (760)
Q Consensus 197 ~~~~~~-l~s~s~----------dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~--~l~s~-s~Dg~I~iwd--~~~ 259 (760)
+++++. ++.... ...|.+.|.. ++.+..+. -...++++.+++++ +|+++ ..++.|.++| +++
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 677444 444332 2457777864 44444443 22367788888887 44443 4578888888 777
Q ss_pred eEEEEecCCcEEEEEEccC
Q 004329 260 CVQSIEHPGCVWDAKFLEN 278 (760)
Q Consensus 260 ~~~~~~~~~~v~~v~~~~~ 278 (760)
.+.++...+....+.+++|
T Consensus 366 ~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 366 ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEECCCCSSCCEEEECC
T ss_pred EEEEecCCCCCceeEECCc
Confidence 7777776666666666655
No 208
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.17 E-value=1.7e-07 Score=105.50 Aligned_cols=257 Identities=10% Similarity=0.003 Sum_probs=172.5
Q ss_pred CCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC--CCceE
Q 004329 29 DNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG--SGEKV 105 (760)
Q Consensus 29 ~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~--~~~~~ 105 (760)
+.+. +++...+++|.+||..+++ ....+.. ...+..+.|+|+++ ++++++.|+.|.+||+. +++.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~-----v~~~i~~-g~~p~~v~~SpDGr-----~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE-----IKTVLDT-GYAVHISRLSASGR-----YLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC-----EEEEEEC-SSCEEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe-----EEEEEeC-CCCccceEECCCCC-----EEEEEcCCCeEEEEECCCCCCcEe
Confidence 3445 7777889999999998765 3444432 34577999999998 68888999999999995 78888
Q ss_pred EEEeCCCccEEEEEec------CCeE-EEEECCCeEEEEECC--ceeEEeec----------C-CcCeEEEEEeCCCc--
Q 004329 106 QTLQGHKLQVTGVTLD------NEDI-VSSSVDSTLKRWRKG--KLVEFWEA----------H-NAPIQTVIRIPSGE-- 163 (760)
Q Consensus 106 ~~l~~h~~~V~~l~~~------~~~l-~sgs~dg~v~vwd~~--~~~~~~~~----------~-~~~v~~v~~~~~~~-- 163 (760)
..+.... ....++++ ++++ ++...++++.++|.. +.+..+.. | ...+..+..++++.
T Consensus 234 ~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 234 AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 8877543 35677776 3454 445567999999975 44444432 1 12577888888765
Q ss_pred EEEEECCCcEEEEeCCCce--E-EeecCCCceEEEEEeCCCe-EE-EEeCCCeEEEEecCC-ceEEEeec-----CCCcE
Q 004329 164 IVSGSSDTTIKLWKGKKCA--Q-TFVGHTDTVRGLSVMPGVG-II-SASHDCTIRLWALTG-QVLMEMVG-----HTAIV 232 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~~~--~-~~~~h~~~V~~l~~~~~~~-l~-s~s~dg~I~iwd~~~-~~~~~~~~-----h~~~v 232 (760)
++....+|.|.++|..... . ...........+.|+|+++ ++ ++..++.|.++|... +.+..+.. |.+.-
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g 392 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 392 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence 4556677999999965421 1 1122345677889999777 44 445688999999754 44444332 43222
Q ss_pred EEEEEeCCC--eEEEEe-CCCcEEEEe--C-------CceEEEEecCC-cEEEEEEccCCc-EEEEEc-------CCcEE
Q 004329 233 YSIDSHASG--LIVSGS-EDRFAKIWK--D-------GVCVQSIEHPG-CVWDAKFLENGD-IVTACS-------DGVTR 291 (760)
Q Consensus 233 ~~v~~~p~~--~l~s~s-~Dg~I~iwd--~-------~~~~~~~~~~~-~v~~v~~~~~g~-lvt~~~-------dg~I~ 291 (760)
..+ ++|++ ..+++. .++.|.++| . .+.++++...+ .-..+..+|+++ +.+... .+.|.
T Consensus 393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 222 57875 444443 568999999 3 45778877543 335577899999 444332 35999
Q ss_pred EEeCCCC
Q 004329 292 IWTVHSD 298 (760)
Q Consensus 292 vw~~~~~ 298 (760)
+||+.+.
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 9998865
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=5.5e-08 Score=100.59 Aligned_cols=217 Identities=7% Similarity=-0.049 Sum_probs=124.2
Q ss_pred EeEEeccCCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEE
Q 004329 11 LSSELRGHEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSG 88 (760)
Q Consensus 11 l~~~l~gH~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sg 88 (760)
....+..+..---+..|+++ +. +++...++.|..||..++.. ..+ .+...+.++++++++. ++.+
T Consensus 4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------~~~-~~~~~~~~i~~~~dG~------l~v~ 70 (297)
T 3g4e_A 4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------QRV-TMDAPVSSVALRQSGG------YVAT 70 (297)
T ss_dssp EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------EEE-ECSSCEEEEEEBTTSS------EEEE
T ss_pred EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------EEE-eCCCceEEEEECCCCC------EEEE
Confidence 33445555566678899985 45 66777789999999986541 122 2456799999999887 4555
Q ss_pred eCCCeEEEEECCCCceEEEEeC----CCccEEEEEec-CCeEEEEEC------------CCeEEEEECCceeEEeecCCc
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQG----HKLQVTGVTLD-NEDIVSSSV------------DSTLKRWRKGKLVEFWEAHNA 151 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~----h~~~V~~l~~~-~~~l~sgs~------------dg~v~vwd~~~~~~~~~~~~~ 151 (760)
. ++.|.+||.++++....... ....+..+.++ ++.++.++. .+.|..++..........+..
T Consensus 71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 149 (297)
T 3g4e_A 71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVD 149 (297)
T ss_dssp E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEES
T ss_pred E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccc
Confidence 5 57899999988765433322 12456778887 444555442 123444444333333333334
Q ss_pred CeEEEEEeCCCc-E-EEEECCCcEEEEeCC--Cc----eEEe---ecCCCceEEEEEeCCCeEE-EEeCCCeEEEEecC-
Q 004329 152 PIQTVIRIPSGE-I-VSGSSDTTIKLWKGK--KC----AQTF---VGHTDTVRGLSVMPGVGII-SASHDCTIRLWALT- 218 (760)
Q Consensus 152 ~v~~v~~~~~~~-l-~tgs~dg~i~iwd~~--~~----~~~~---~~h~~~V~~l~~~~~~~l~-s~s~dg~I~iwd~~- 218 (760)
....++|+|+++ + ++.+.++.|..|+.. .. .+.+ ..+......+++.+++.+. +...++.|..||..
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 456777777775 3 344456677777632 11 0111 1223445566666655533 33344556666654
Q ss_pred CceEEEeecCCCcEEEEEEe-CCC
Q 004329 219 GQVLMEMVGHTAIVYSIDSH-ASG 241 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~-p~~ 241 (760)
++.+..+..+...+++++|. |++
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGG
T ss_pred ceEEEEEECCCCCceEEEEeCCCC
Confidence 55555555555556666665 444
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.15 E-value=8.8e-09 Score=109.02 Aligned_cols=265 Identities=8% Similarity=-0.029 Sum_probs=172.2
Q ss_pred EEcCCCe-EEEEEC-----CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----------
Q 004329 26 CVCDNVG-IATSSR-----DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG---------- 89 (760)
Q Consensus 26 ~~~~~~~-l~tgs~-----Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs---------- 89 (760)
...|++. ++.... ++.|.+.|..+.+ ....+.....+ . ++++|+++. ++++.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-----v~~~I~vG~~P-~-va~spDG~~-----lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-----VIGMIDGGFLP-N-PVVADDGSF-----IAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-----EEEEEEECSSC-E-EEECTTSSC-----EEEEEEEEEETTEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-----EEEEEECCCCC-c-EEECCCCCE-----EEEEcccccccccCC
Confidence 3457777 555543 6899999998665 44445444444 4 999999984 44443
Q ss_pred CCCeEEEEECCCCceEEEEeCCC-------ccEEEEEec--CCeEEEEEC--CCeEEEEECC--ceeEEeecCCcCeEEE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGHK-------LQVTGVTLD--NEDIVSSSV--DSTLKRWRKG--KLVEFWEAHNAPIQTV 156 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h~-------~~V~~l~~~--~~~l~sgs~--dg~v~vwd~~--~~~~~~~~~~~~v~~v 156 (760)
.++.|.+||..+++.+..+.-.. .....+.++ +++++++.. ++.|.++|.. +.+..+.... . .
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~ 182 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--Y 182 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--E
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--c
Confidence 46789999999999988875321 133456665 666777663 6899999985 4445553322 1 1
Q ss_pred EEeCCC--cEEEEECCCcEEEEeCCC---ceEEeecC----CCceE-EEEEe-CCCeEEEEeCCCeEEEEecCCceEEE-
Q 004329 157 IRIPSG--EIVSGSSDTTIKLWKGKK---CAQTFVGH----TDTVR-GLSVM-PGVGIISASHDCTIRLWALTGQVLME- 224 (760)
Q Consensus 157 ~~~~~~--~l~tgs~dg~i~iwd~~~---~~~~~~~h----~~~V~-~l~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~- 224 (760)
...|.+ .+++.+.||.+.+.+... .......+ ..++. ...|. ++++++..+.+|+|.+.|..+.....
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceee
Confidence 223432 377888899988888643 21111111 12221 23554 57776667889999999986553222
Q ss_pred --ee---------c-CCCcEEEEEEeCCC-eEEEEeC----------CCcEEEEe--CCceEEEEecCCcEEEEEEccCC
Q 004329 225 --MV---------G-HTAIVYSIDSHASG-LIVSGSE----------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENG 279 (760)
Q Consensus 225 --~~---------~-h~~~v~~v~~~p~~-~l~s~s~----------Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g 279 (760)
+. + .......+++++++ .++.... .+.|.+.| +++.+..+.....++++++++|+
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~ 342 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 342 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSS
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCC
Confidence 21 0 11222346678887 4444332 25688889 88889999877799999999999
Q ss_pred c--EEEEEc-CCcEEEEeCCCCeeechhhh
Q 004329 280 D--IVTACS-DGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 280 ~--lvt~~~-dg~I~vw~~~~~~~~~~~~~ 306 (760)
+ ++++.. ++.|.++|..+++.+.++..
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 7 455444 89999999999998876653
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=5.8e-08 Score=100.39 Aligned_cols=218 Identities=15% Similarity=0.146 Sum_probs=149.0
Q ss_pred eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEEC
Q 004329 61 LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 61 ~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~ 139 (760)
+..+...-.+..|+++... ++++...++.|+.||..+++. ..+. ....+.+++++ ++.++.+. ++.|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~----l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNS----LLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTE----EEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCE----EEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE-CCeEEEEEC
Confidence 3344556678999987653 467777889999999987765 2333 45678999997 55566666 568889987
Q ss_pred C-ceeEEeec-----CCcCeEEEEEeCCCcEEEEEC------------CCcEEEEeCCCceEEeecCCCceEEEEEeCCC
Q 004329 140 G-KLVEFWEA-----HNAPIQTVIRIPSGEIVSGSS------------DTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGV 201 (760)
Q Consensus 140 ~-~~~~~~~~-----~~~~v~~v~~~~~~~l~tgs~------------dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~ 201 (760)
. .....+.. ....+..+.+.++|+++.++. .+.|..++.......+..+....+.++|+|++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence 4 22222221 124578899999999766542 23455555444444444455567899999977
Q ss_pred e-E-EEEeCCCeEEEEecC---Cce-----EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecC-
Q 004329 202 G-I-ISASHDCTIRLWALT---GQV-----LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP- 267 (760)
Q Consensus 202 ~-l-~s~s~dg~I~iwd~~---~~~-----~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~- 267 (760)
. + ++.+.++.|.+|++. +.. ...+..+......+++.++| +.++...++.|..|| +++.+..+..+
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 5 4 556668999999863 322 22223344678899999999 666666778899999 48888888866
Q ss_pred CcEEEEEEc-cCCc-EEEEE
Q 004329 268 GCVWDAKFL-ENGD-IVTAC 285 (760)
Q Consensus 268 ~~v~~v~~~-~~g~-lvt~~ 285 (760)
..+++++|. |+++ +++++
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEE
T ss_pred CCceEEEEeCCCCCEEEEEc
Confidence 589999998 8877 44444
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.13 E-value=4.1e-08 Score=106.42 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=117.6
Q ss_pred CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC--eEEE
Q 004329 20 DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT--MVLV 96 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg--~I~v 96 (760)
.....++|++++. +++...++.|++||..++. ....... ..... ++|++++. .++++..++ .|.+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-----~~~~~~~-~~~~~-ia~~~~g~-----~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-----VTTVHPG-FKGGK-PAVTKDKQ-----RVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-----EEEEEET-CCBCB-CEECTTSS-----EEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-----EEEeecc-CCCCc-eeEecCCC-----cEEEEecCCCceEEE
Confidence 4678999999999 5555667899999998554 2222222 22233 89999887 577777765 7999
Q ss_pred EECCCCceEEEE----eCCCccEEEEEec--CCeEEEEECCCeEEEEECCce-eEEe-----ecCCcCe--EEEEEeCC-
Q 004329 97 WDLGSGEKVQTL----QGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKGKL-VEFW-----EAHNAPI--QTVIRIPS- 161 (760)
Q Consensus 97 wd~~~~~~~~~l----~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~~~-~~~~-----~~~~~~v--~~v~~~~~- 161 (760)
|+..++.....+ ..+...+.+++++ ++.++.+..++.|+.||.... ...+ .++...- ..++++|+
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 998766544444 2244556777776 466777777888888887522 2222 1111111 27788884
Q ss_pred CcEE-EEECCCcEEEEeCCCceEEeecCC---------------CceEEEEEeCCCeE-EEEe-CCCeEEEEecCCceEE
Q 004329 162 GEIV-SGSSDTTIKLWKGKKCAQTFVGHT---------------DTVRGLSVMPGVGI-ISAS-HDCTIRLWALTGQVLM 223 (760)
Q Consensus 162 ~~l~-tgs~dg~i~iwd~~~~~~~~~~h~---------------~~V~~l~~~~~~~l-~s~s-~dg~I~iwd~~~~~~~ 223 (760)
+.++ +-..++.|+.|+.......+.++. .....+++.+++.+ ++-+ .++.|+.|+.....+.
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 5543 444567777777554444444332 23566667665553 3333 4566666664333344
Q ss_pred Eeec
Q 004329 224 EMVG 227 (760)
Q Consensus 224 ~~~~ 227 (760)
.+.+
T Consensus 359 ~~~g 362 (409)
T 3hrp_A 359 TVAG 362 (409)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 4433
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.11 E-value=1e-08 Score=120.53 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=152.3
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeCC-C----eEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCe----
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGMD-T----MVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDST---- 133 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~d-g----~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~---- 133 (760)
|...+..++|+|+++ +|+.++.+ | .|++||+.+++.+... .+...+..++|+ ++.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~-----~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 161 GATALDAWAASDDGR-----LLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQ 234 (741)
T ss_dssp --EEEEEEEECTTSS-----EEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC----
T ss_pred CCEEEEeEEECCCCC-----EEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCccccc
Confidence 445788999999998 45554433 3 5999999999875431 122223467786 456777776654
Q ss_pred ----------EEEEECCce----eEEeec--CCcCeEEEEEeCCCc-EEEEECC-----CcEEEEeCCC---c-eEEeec
Q 004329 134 ----------LKRWRKGKL----VEFWEA--HNAPIQTVIRIPSGE-IVSGSSD-----TTIKLWKGKK---C-AQTFVG 187 (760)
Q Consensus 134 ----------v~vwd~~~~----~~~~~~--~~~~v~~v~~~~~~~-l~tgs~d-----g~i~iwd~~~---~-~~~~~~ 187 (760)
|++|+.+.. ...+.. +...+..+.++|+|+ ++..+.+ ..|++||... . .+.+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 888887532 233333 233588999999997 5554433 3799998543 2 566666
Q ss_pred CCCceEEEEEeCCCeEEEEeCC----CeEEEEecCC--ceEEEee-cCCCcEEEEEEeCCCeEEEEeCCCcEEEEe---C
Q 004329 188 HTDTVRGLSVMPGVGIISASHD----CTIRLWALTG--QVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK---D 257 (760)
Q Consensus 188 h~~~V~~l~~~~~~~l~s~s~d----g~I~iwd~~~--~~~~~~~-~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd---~ 257 (760)
+...+....+..++.++..+++ +.|.+||+.+ .....+. .+...+.++.++.+.++++...|+..+||. .
T Consensus 315 ~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 315 DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 6665655544335557766653 4599999865 3444444 444566678887333888889999888875 5
Q ss_pred CceEEEEe--cCCcEEEEEEccCCc-EE-EEEc---CCcEEEEeCCCCee
Q 004329 258 GVCVQSIE--HPGCVWDAKFLENGD-IV-TACS---DGVTRIWTVHSDKV 300 (760)
Q Consensus 258 ~~~~~~~~--~~~~v~~v~~~~~g~-lv-t~~~---dg~I~vw~~~~~~~ 300 (760)
+...+.+. ..+.+..+.++|+++ ++ +.++ .+.|++||+.+++.
T Consensus 395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666666 356889999999987 44 3332 58999999988763
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.10 E-value=2.7e-07 Score=98.63 Aligned_cols=259 Identities=7% Similarity=-0.108 Sum_probs=164.0
Q ss_pred EcCCCe-EEEEEC--CC---eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----------C
Q 004329 27 VCDNVG-IATSSR--DR---TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG----------M 90 (760)
Q Consensus 27 ~~~~~~-l~tgs~--Dg---~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs----------~ 90 (760)
..+++. +..... .+ +|.+||..+++ ....+.....+ .++++|+++ .++.+. .
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~-----~~~~i~~g~~p--~i~~spDg~-----~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGS-----ILGHVNGGFLP--NPVAAHSGS-----EFALASTSFSRIAKGKR 95 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCe-----EEEEecCCCCC--CeEECCCCC-----EEEEEeccccccccCCC
Confidence 346666 444432 33 88999998665 33444433333 999999998 455554 3
Q ss_pred CCeEEEEECCCCceEEEEeCC-------CccEEEEEec--CCeEEEEEC--CCeEEEEECCc--eeEE-eecCCcCeEEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGH-------KLQVTGVTLD--NEDIVSSSV--DSTLKRWRKGK--LVEF-WEAHNAPIQTV 156 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h-------~~~V~~l~~~--~~~l~sgs~--dg~v~vwd~~~--~~~~-~~~~~~~v~~v 156 (760)
++.|.+||..+.+.+..+... ......+.++ +++++++.. ++.|.++| .. .+.. +.. .. ++
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~ 170 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CY 170 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eE
Confidence 678999999998887776532 1223466675 666777764 57899999 63 2323 221 11 24
Q ss_pred EEeCCCc--EEEEECCCcEEEEeCCCceEE--ee-----cCCCce-EEEEEeC-CCeEEEEeCCCeEEEEecCCce---E
Q 004329 157 IRIPSGE--IVSGSSDTTIKLWKGKKCAQT--FV-----GHTDTV-RGLSVMP-GVGIISASHDCTIRLWALTGQV---L 222 (760)
Q Consensus 157 ~~~~~~~--l~tgs~dg~i~iwd~~~~~~~--~~-----~h~~~V-~~l~~~~-~~~l~s~s~dg~I~iwd~~~~~---~ 222 (760)
.+.+++. +++.+.||.+.++|. ..... .. ....++ ....+.+ ++.++..+.++.+.+.|+.+.. +
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence 4555543 678888999999987 32211 11 111121 2233444 3444444578899999985432 2
Q ss_pred EEeec----------CCCcEEEEEEeCCC-eEEEEeC----------CCcEEEEe--CCceEEEEecCCcEEEEEEccCC
Q 004329 223 MEMVG----------HTAIVYSIDSHASG-LIVSGSE----------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENG 279 (760)
Q Consensus 223 ~~~~~----------h~~~v~~v~~~p~~-~l~s~s~----------Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g 279 (760)
..+.- .......+.++|++ .++.+.. ++.|.++| +++.+..+......++++|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg 329 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG 329 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCC
Confidence 22211 12234447789988 5555432 35799999 67788888877789999999999
Q ss_pred c--EEEEE-cCCcEEEEeCCCCeeech
Q 004329 280 D--IVTAC-SDGVTRIWTVHSDKVADS 303 (760)
Q Consensus 280 ~--lvt~~-~dg~I~vw~~~~~~~~~~ 303 (760)
+ ++++. .++.|.+||..+++.+..
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 8 45555 489999999999988765
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=3.9e-08 Score=106.67 Aligned_cols=222 Identities=12% Similarity=0.067 Sum_probs=152.6
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECCC--eEEEEECCc
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVDS--TLKRWRKGK 141 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg--~v~vwd~~~ 141 (760)
.....++|.+++. ++++...++.|++||..++............ . ++++ ++.++++..++ .|.+|+...
T Consensus 131 ~~P~~la~d~~g~-----lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-----VLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTE-----EEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCC-----EEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 4678899998776 4566666799999999887766555543332 3 6776 56688888766 788887642
Q ss_pred --eeEEe---ec-CCcCeEEEEEeC-CCcEEEEECCCcEEEEeCCCce-EEe-----ecCCCce-E-EEEEeC-CCe-EE
Q 004329 142 --LVEFW---EA-HNAPIQTVIRIP-SGEIVSGSSDTTIKLWKGKKCA-QTF-----VGHTDTV-R-GLSVMP-GVG-II 204 (760)
Q Consensus 142 --~~~~~---~~-~~~~v~~v~~~~-~~~l~tgs~dg~i~iwd~~~~~-~~~-----~~h~~~V-~-~l~~~~-~~~-l~ 204 (760)
....+ .. ....+.+++++| ++.++.+..++.|+.||..... ..+ .++...- . .++++| ++. ++
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 22222 12 455678899999 6777777778899999965432 222 1122222 3 999999 566 55
Q ss_pred EEeCCCeEEEEecCCceEEEeecCC---------------CcEEEEEEeCCC-eEEEEe-CCCcEEEEe-CCceEEEE-e
Q 004329 205 SASHDCTIRLWALTGQVLMEMVGHT---------------AIVYSIDSHASG-LIVSGS-EDRFAKIWK-DGVCVQSI-E 265 (760)
Q Consensus 205 s~s~dg~I~iwd~~~~~~~~~~~h~---------------~~v~~v~~~p~~-~l~s~s-~Dg~I~iwd-~~~~~~~~-~ 265 (760)
+-..++.|+.|+.++. +..+.++. .....++++++| ++++-+ .++.|+.|+ ....+.++ .
T Consensus 284 ~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 5567889999998876 33444432 458899999999 777777 889999999 33334433 3
Q ss_pred c---------------CCcEEEEEEccCCcE-EEEEcCCcEEEEeC
Q 004329 266 H---------------PGCVWDAKFLENGDI-VTACSDGVTRIWTV 295 (760)
Q Consensus 266 ~---------------~~~v~~v~~~~~g~l-vt~~~dg~I~vw~~ 295 (760)
+ -...+.++++++|.+ ++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3 136899999999885 55555788888765
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.08 E-value=7.6e-08 Score=103.10 Aligned_cols=259 Identities=10% Similarity=0.052 Sum_probs=165.4
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC---------CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH---------TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h---------~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
++.++.++.++.|..||..+++. ....... ...+.+.....++ .++.++.++.|..+|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~v~~~~g~l~a~d~~ 121 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKE-----IWSVSLAEKDGWFSKEPALLSGGVTVSGG------HVYIGSEKAQVYALNTS 121 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-----EEEEECCC---CCSCCCCCEEEEEEEETT------EEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEEccCCce-----eeeecCccccccccccCcccccCceEeCC------EEEEEcCCCEEEEEECC
Confidence 56688889999999999987762 2122111 2223222222222 58889999999999999
Q ss_pred CCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC--CceeEEeecCCcCe-----EEEEEeCCCcEEEEECCCcE
Q 004329 101 SGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK--GKLVEFWEAHNAPI-----QTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 101 ~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~v-----~~v~~~~~~~l~tgs~dg~i 173 (760)
+|+.+................++.++.++.++.+..+|. ++.+.......... ...... ++.++.++.++.+
T Consensus 122 tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l 200 (376)
T 3q7m_A 122 DGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRV 200 (376)
T ss_dssp TCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEE
T ss_pred CCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEE
Confidence 999988776544333333445788999999999999996 45554444322111 111222 5678888889999
Q ss_pred EEEeCCCceE--EeecCCC-------c---eEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCC
Q 004329 174 KLWKGKKCAQ--TFVGHTD-------T---VRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 174 ~iwd~~~~~~--~~~~h~~-------~---V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~ 240 (760)
..+|..+... ....... . +.......++.++.++.++.+..+|. +++.+..... .....+... +
T Consensus 201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~-~ 277 (376)
T 3q7m_A 201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD-G 277 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE-T
T ss_pred EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE-C
Confidence 9999654333 2221110 0 11111112677888889999999997 5776655432 334444443 4
Q ss_pred CeEEEEeCCCcEEEEe--CCceEEEEe-cCC-cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 241 GLIVSGSEDRFAKIWK--DGVCVQSIE-HPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 241 ~~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~-~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+.++.++.++.+..+| +++.+.... ... .+..... .++.+++++.+|.+.+||..+++.+...
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 4788888999999999 677666655 222 2222222 3566889999999999999999876543
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=2.6e-07 Score=98.65 Aligned_cols=249 Identities=11% Similarity=-0.052 Sum_probs=157.9
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEeeC------
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILLG------ 63 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~------ 63 (760)
|.++|..++++..++.....+ .++++||++ ++.+. .++.|.+||..+.+ ....+.-
T Consensus 49 v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-----~~~~i~~~~~~~~ 121 (373)
T 2mad_H 49 QWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-----PIADIELPDAPRF 121 (373)
T ss_pred EEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc-----EEEEEECCCcccc
Confidence 357888899999888865554 999999999 66654 47889999997654 2222211
Q ss_pred -CCCCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEEEECCCCceEEE-EeCCCccEEEEEecCCeEEEEECCCeEEEEEC
Q 004329 64 -HTSFVGPLAWISPNEEFPEGGLVSGGM--DTMVLVWDLGSGEKVQT-LQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 64 -h~~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~ 139 (760)
+...-..++|+|+++ +++++.. ++.|.++| .+++.+.. +... ..+......+..+++.+.||.+.+++.
T Consensus 122 ~~g~~p~~~~~spDG~-----~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 122 DVGPYSWMNANTPNNA-----DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ccCCCccceEECCCCC-----EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 113345899999998 4666653 58899999 99998877 6532 222222223455788889999999987
Q ss_pred -CceeEEee-----cCCcCe-EEEEEeCCC-cEEEEECCCcEEEEeCCCc----eEEeec----------CCCceEEEEE
Q 004329 140 -GKLVEFWE-----AHNAPI-QTVIRIPSG-EIVSGSSDTTIKLWKGKKC----AQTFVG----------HTDTVRGLSV 197 (760)
Q Consensus 140 -~~~~~~~~-----~~~~~v-~~v~~~~~~-~l~tgs~dg~i~iwd~~~~----~~~~~~----------h~~~V~~l~~ 197 (760)
++...... ....++ ....+.+++ .++..+..+.+.+.|.... ...+.- .......+.+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 22221111 111221 123344443 3444457788988886432 112211 1223445778
Q ss_pred eCCCe-EEEEeC----------CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC--eEEEEe-CCCcEEEEe--CCce
Q 004329 198 MPGVG-IISASH----------DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG--LIVSGS-EDRFAKIWK--DGVC 260 (760)
Q Consensus 198 ~~~~~-l~s~s~----------dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s-~Dg~I~iwd--~~~~ 260 (760)
+|++. ++.+.. ++.|.++|.. ++.+.++. ......++.|+|+| .++++. .++.|.+|| +++.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 88655 444432 3579999976 45556664 34468999999998 566666 589999999 6677
Q ss_pred EEEE
Q 004329 261 VQSI 264 (760)
Q Consensus 261 ~~~~ 264 (760)
+..+
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 7763
No 218
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.07 E-value=1.6e-06 Score=102.67 Aligned_cols=271 Identities=9% Similarity=0.078 Sum_probs=190.2
Q ss_pred CCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEe-----eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC
Q 004329 18 HEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKIL-----LGHTSFVGPLAWISPNEEFPEGGLVSGGMDT 92 (760)
Q Consensus 18 H~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg 92 (760)
+...|.++...+++.|..|+.++-+..||..++.. ...... .-....|.++...+++. +..|+.+
T Consensus 213 ~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~l~~~~i~~i~~d~~g~------lWigt~~- 282 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEI---KNYLHSPSNPKSISSNYIRSLAMDSQNR------LWIGTFN- 282 (795)
T ss_dssp -CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEE---EEECCCTTCTTSCSCSBEEEEEECTTSC------EEEEESS-
T ss_pred CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeE---EEeecCCCCccccCCCeEEEEEEcCCCC------EEEEeCC-
Confidence 35679999988888888888766688999875431 111000 01246799998877776 7777776
Q ss_pred eEEEEECCCCceEEEEeC-------CCccEEEEEec-CCeEEEEECCCeEEEEECC-ceeEEeec-------CCcCeEEE
Q 004329 93 MVLVWDLGSGEKVQTLQG-------HKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG-KLVEFWEA-------HNAPIQTV 156 (760)
Q Consensus 93 ~I~vwd~~~~~~~~~l~~-------h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~-~~~~~~~~-------~~~~v~~v 156 (760)
-|.+||..+++....... ....|.++..+ ++.+..|+.++-|..|+.. .....+.. ....|.++
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE
Confidence 588999887765433221 23579999888 7779999998889999754 22222221 24569999
Q ss_pred EEeCCCcEEEEECCCcEEEEeCCCc-eEEeec---------CCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEe
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGKKC-AQTFVG---------HTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEM 225 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~~~-~~~~~~---------h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~ 225 (760)
...++|.+..|+.++-|..|+.... ...+.. ....|.+++..+++. +..|+.++-|..||........+
T Consensus 363 ~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 363 VEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 9999999999999988999986542 223321 236799999988888 99999988899999766555554
Q ss_pred ec-----CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEec--------CCcEEEEEEccCCcEEEEEcCCcEE
Q 004329 226 VG-----HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH--------PGCVWDAKFLENGDIVTACSDGVTR 291 (760)
Q Consensus 226 ~~-----h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~~--------~~~v~~v~~~~~g~lvt~~~dg~I~ 291 (760)
.. +...|.++...++|.|..|+.+| +.+|| .......+.. ...|.++...++|.+..|+. +-+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~ 520 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLS 520 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceE
Confidence 32 34679999998888666666654 88888 3333333332 24789999999999877777 5688
Q ss_pred EEeCCCCee
Q 004329 292 IWTVHSDKV 300 (760)
Q Consensus 292 vw~~~~~~~ 300 (760)
.|+..+++.
T Consensus 521 ~~~~~~~~~ 529 (795)
T 4a2l_A 521 VFKQEGLDI 529 (795)
T ss_dssp EEEEETTEE
T ss_pred EEeCCCCeE
Confidence 888877664
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.07 E-value=3.4e-09 Score=112.62 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=112.3
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEEeCCCccEEEEEecCCeEEEEECCCeEE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-----------KVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLK 135 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-----------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~ 135 (760)
.++.+++++... ++++|+.++ +.+|++++.+ ..... .+.. |+.++|+++.++++ .++.|+
T Consensus 39 ~~nlLais~~~g-----ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKS-----LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTTT-----EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEE
T ss_pred cccEEEEcCCCC-----EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEE
Confidence 688999999876 688888875 5559865332 11222 3555 88888855566666 778888
Q ss_pred EEECCc--eeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEE
Q 004329 136 RWRKGK--LVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIR 213 (760)
Q Consensus 136 vwd~~~--~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~ 213 (760)
+||... .......|..++.++.+.+.+ +++++.||.+.+||....... .+...|++++|+|.+ ++.|..||+++
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~--~~~~~Vs~v~WSpkG-~~vg~~dg~i~ 185 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTK--QLAQNVTSFDVTNSQ-LAVLLKDRSFQ 185 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEE--EEEESEEEEEECSSE-EEEEETTSCEE
T ss_pred EEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCccc--cccCCceEEEEcCCc-eEEEEcCCcEE
Confidence 888752 223345566677777666543 777888888888886643321 245678888888877 67788888888
Q ss_pred EEecCCce---EEEe------e---cCCCcEEEEEEeCCC-eEEE
Q 004329 214 LWALTGQV---LMEM------V---GHTAIVYSIDSHASG-LIVS 245 (760)
Q Consensus 214 iwd~~~~~---~~~~------~---~h~~~v~~v~~~p~~-~l~s 245 (760)
+|+..+.. ..++ . +|...|.++.|.+++ ++++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 88876655 3344 2 367778888888877 4444
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.06 E-value=4.7e-09 Score=111.55 Aligned_cols=172 Identities=8% Similarity=0.016 Sum_probs=127.9
Q ss_pred CEEEEEEcCCCe-EEEEECCCeEEEEeCCCCC------CccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCe
Q 004329 21 DVRGICVCDNVG-IATSSRDRTVRFWSLDPSD------KRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTM 93 (760)
Q Consensus 21 ~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~ 93 (760)
.++.+++++... +++|+.| .+++|++.+.. ...+... ....+.. |++++| ++. +|+++ .++.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~-----~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD-----QVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT-----EEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC-----EEEEE-cCCc
Confidence 588999998877 8888877 55669865221 0002221 2334666 999999 555 57777 8899
Q ss_pred EEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCcEEEEECCCcE
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i 173 (760)
|++||+.+.........|...+.++.+....+++++.||.+.+||....... .+...|+|++|+|+| ++.|..||++
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~--~~~~~Vs~v~WSpkG-~~vg~~dg~i 184 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK--QLAQNVTSFDVTNSQ-LAVLLKDRSF 184 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEEESEEEEEECSSE-EEEEETTSCE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccc--cccCCceEEEEcCCc-eEEEEcCCcE
Confidence 9999998877766777888889998887656999999999999998633221 255789999999999 7889999999
Q ss_pred EEEeCCCc----eEEe------e---cCCCceEEEEEeCCCeEEEE
Q 004329 174 KLWKGKKC----AQTF------V---GHTDTVRGLSVMPGVGIISA 206 (760)
Q Consensus 174 ~iwd~~~~----~~~~------~---~h~~~V~~l~~~~~~~l~s~ 206 (760)
++|+.... .+++ . +|...|.+++|.+++.++..
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99974432 3344 2 37889999999998775443
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.06 E-value=1.2e-07 Score=99.38 Aligned_cols=207 Identities=10% Similarity=-0.032 Sum_probs=113.5
Q ss_pred CCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
.-..+..|+++ +. +++...++.|..||..++. ...+. ....+.+++|.+++. ++.++.+ .|.+|
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------~~~~~-~~~~v~~i~~~~dg~------l~v~~~~-gl~~~ 114 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGR------KTVHA-LPFMGSALAKISDSK------QLIASDD-GLFLR 114 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------EEEEE-CSSCEEEEEEEETTE------EEEEETT-EEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------EEEEE-CCCcceEEEEeCCCe------EEEEECC-CEEEE
Confidence 34578899986 44 6777778999999987543 11222 346799999999886 4455544 49999
Q ss_pred ECCCCceEEEEeC----CCccEEEEEec-CCeEEEEEC-------CCeEEEEECCceeEEeecCCcCeEEEEEeCCCc-E
Q 004329 98 DLGSGEKVQTLQG----HKLQVTGVTLD-NEDIVSSSV-------DSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 98 d~~~~~~~~~l~~----h~~~V~~l~~~-~~~l~sgs~-------dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~-l 164 (760)
|..+++....... ....+.++.++ ++.++.++. .+.|..++ ......+..+......++|+++++ +
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEE
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEE
Confidence 9988875433221 12357777776 444444442 24455555 332322322333455677777775 3
Q ss_pred E-EEECCCcEEEEeCC--Cc-e----EEee---cCCCceEEEEEeCCCeEEEE-eCCCeEEEEecCCceEEEeecCCCcE
Q 004329 165 V-SGSSDTTIKLWKGK--KC-A----QTFV---GHTDTVRGLSVMPGVGIISA-SHDCTIRLWALTGQVLMEMVGHTAIV 232 (760)
Q Consensus 165 ~-tgs~dg~i~iwd~~--~~-~----~~~~---~h~~~V~~l~~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~h~~~v 232 (760)
+ +.+.++.|.+|+.. .. . +.+. .....+.++++.+++.+..+ ..++.|.+||.+++.+..+..+...+
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~ 273 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQT 273 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBE
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCc
Confidence 3 33445677777643 11 0 1111 12233445555554443322 23445555555555444444444445
Q ss_pred EEEEEe-CCC
Q 004329 233 YSIDSH-ASG 241 (760)
Q Consensus 233 ~~v~~~-p~~ 241 (760)
++++|. +++
T Consensus 274 ~~~af~g~d~ 283 (326)
T 2ghs_A 274 TCPAFIGPDA 283 (326)
T ss_dssp EEEEEESTTS
T ss_pred EEEEEecCCC
Confidence 555555 443
No 222
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.06 E-value=8.1e-09 Score=121.45 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=145.8
Q ss_pred CCCCEEEEEEcCCCe-EEEEECC-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC
Q 004329 18 HEDDVRGICVCDNVG-IATSSRD-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD 91 (760)
Q Consensus 18 H~~~V~~v~~~~~~~-l~tgs~D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d 91 (760)
|...+.+++|+|||+ |+.++.+ ..|++||+.+++. .. ...+...+..++|+|+ + .|+.++.+
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-----~~-~~~~~~~~~~~~wspD-~-----~l~~~~~~ 228 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-----LA-DELKWVKFSGLAWLGN-D-----ALLYSRFA 228 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE-----EE-EEEEEEESCCCEESTT-S-----EEEEEECC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----CC-ccCCCceeccEEEECC-C-----EEEEEEec
Confidence 444688999999999 6666543 3699999997762 11 1111222357899999 6 46666655
Q ss_pred Ce--------------EEEEECCCCce--EEEEe--CCCccEEEEEec--CCeEEEEECCC-----eEEEEECCc---e-
Q 004329 92 TM--------------VLVWDLGSGEK--VQTLQ--GHKLQVTGVTLD--NEDIVSSSVDS-----TLKRWRKGK---L- 142 (760)
Q Consensus 92 g~--------------I~vwd~~~~~~--~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg-----~v~vwd~~~---~- 142 (760)
+. |++|++.++.. ...+. .+...+..+.|+ +++++..+.++ .|++||... .
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 43 99999987752 22333 333457888887 44577666543 788998632 2
Q ss_pred eEEeecCCcCeEEEEEeCCCc-EEEEEC----CCcEEEEeCCCc---eE-EeecCCCceEEEEEeCCCeEEEEeCCCeEE
Q 004329 143 VEFWEAHNAPIQTVIRIPSGE-IVSGSS----DTTIKLWKGKKC---AQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIR 213 (760)
Q Consensus 143 ~~~~~~~~~~v~~v~~~~~~~-l~tgs~----dg~i~iwd~~~~---~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~ 213 (760)
...+..+...+....+ ++|. ++..+. ++.|.+||.... .+ .+..+...+.++.+..+..+++...|+..+
T Consensus 309 ~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQ 387 (741)
T ss_dssp CEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEE
T ss_pred cEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEE
Confidence 4556555555555544 6655 666655 345999996542 23 334455567778888444478888899877
Q ss_pred EEe--cCCceEEEeec-CCCcEEEEEEeCCC-eEE-EEe---CCCcEEEEe
Q 004329 214 LWA--LTGQVLMEMVG-HTAIVYSIDSHASG-LIV-SGS---EDRFAKIWK 256 (760)
Q Consensus 214 iwd--~~~~~~~~~~~-h~~~v~~v~~~p~~-~l~-s~s---~Dg~I~iwd 256 (760)
+|. +++.....+.. +...+..+.++|++ .++ +.+ ..++|++||
T Consensus 388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 775 56777776654 36788999999987 343 322 347899999
No 223
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.01 E-value=1.5e-06 Score=89.06 Aligned_cols=228 Identities=10% Similarity=-0.063 Sum_probs=157.2
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEE-EEeCCCccEEEEEec-CCeEEEEE-CCCeEEEEEC
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQ-TLQGHKLQVTGVTLD-NEDIVSSS-VDSTLKRWRK 139 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~V~~l~~~-~~~l~sgs-~dg~v~vwd~ 139 (760)
.....+.++++.+++. +.++...++.|.+||.. ++... .+..+...+.+++++ ++.++.+. .++.|..||.
T Consensus 17 ~~~~~p~~i~~d~~g~-----l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-----VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp STTCCEEEEEECTTSC-----EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCCCcceeeECCCCC-----EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3456788999998876 34554568999999988 55443 223344678899987 45555554 4788999987
Q ss_pred CceeEEeec--CCcCeEEEEEeCCCcEEEEEC-CCcEEEEeCCCceEEee--cCCCceEEEEEeCCCeEEEEe-CCCeEE
Q 004329 140 GKLVEFWEA--HNAPIQTVIRIPSGEIVSGSS-DTTIKLWKGKKCAQTFV--GHTDTVRGLSVMPGVGIISAS-HDCTIR 213 (760)
Q Consensus 140 ~~~~~~~~~--~~~~v~~v~~~~~~~l~tgs~-dg~i~iwd~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s-~dg~I~ 213 (760)
......+.. ....+.++++.+++.++.+.. ++.|..||.......+. .....+.++++.+++.+..+. .++.|.
T Consensus 91 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 91 KGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp TSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 644433332 346788999999998665554 78899998664443332 234678999999977755554 478899
Q ss_pred EEecCCceEEEe-ecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEE-e-cCCcEEEEEEccCCcEEEEE-cC
Q 004329 214 LWALTGQVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSI-E-HPGCVWDAKFLENGDIVTAC-SD 287 (760)
Q Consensus 214 iwd~~~~~~~~~-~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~-~-~~~~v~~v~~~~~g~lvt~~-~d 287 (760)
.+|.+++..... ..+...+.++++.+++ +.++....+.|.+|+ .+...... . ....+.++++.++|.+..++ .+
T Consensus 171 ~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 250 (300)
T 2qc5_A 171 RITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA 250 (300)
T ss_dssp EECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred EECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence 999866654321 2345678999999998 555555667899999 44433321 1 33478999999999965555 46
Q ss_pred CcEEEEeCC
Q 004329 288 GVTRIWTVH 296 (760)
Q Consensus 288 g~I~vw~~~ 296 (760)
+.|..|+..
T Consensus 251 ~~i~~~~~~ 259 (300)
T 2qc5_A 251 NQIGRITND 259 (300)
T ss_dssp TEEEEECTT
T ss_pred CeEEEECCC
Confidence 899999873
No 224
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=7.6e-07 Score=105.46 Aligned_cols=268 Identities=8% Similarity=0.070 Sum_probs=189.0
Q ss_pred EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC
Q 004329 22 VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS 101 (760)
Q Consensus 22 V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~ 101 (760)
|.++...+++.+..|+.++.+..|+..++.. .... ...+...|.++...+++. +..|+.++-+..||..+
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~---~~~~-~~~~~~~i~~i~~d~~g~------lwigt~~~Gl~~~~~~~ 244 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTF---EKVI-PILGTKQIQAILQQSPTR------IWVATEGAGLFLINPKT 244 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCE---EECC-----CCCEEEEEEEETTE------EEEEEBSSCEEEEETTT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeE---EEec-CCCCCCeeEEEEEcCCCC------EEEEECCCCeEEEeCCC
Confidence 8889888888888888776788999875541 1110 112356788888777664 77777665689999887
Q ss_pred CceEEEEeC-------CCccEEEEEec-CCeEEEEECCCeEEEEECCc-eeEEeec--------CCcCeEEEEEeCCCcE
Q 004329 102 GEKVQTLQG-------HKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-LVEFWEA--------HNAPIQTVIRIPSGEI 164 (760)
Q Consensus 102 ~~~~~~l~~-------h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-~~~~~~~--------~~~~v~~v~~~~~~~l 164 (760)
++....... ....|.++..+ ++.+..|+.+ -+.+|+... ....+.. ....|.++...++|.+
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 245 KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp TEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred CeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 655433221 13569999887 6778888876 588888652 2333321 2357999999999999
Q ss_pred EEEECCCcEEEEeCCCc-eEEeec-------CCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeec---------
Q 004329 165 VSGSSDTTIKLWKGKKC-AQTFVG-------HTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVG--------- 227 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~~-~~~~~~-------h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------- 227 (760)
..|+.++-|..|+.... ...+.. ....|.++...+++.+..|+.++-|..||........+..
T Consensus 324 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 99999888999985432 222221 2456999999888889999999889999976554444321
Q ss_pred CCCcEEEEEEeCCCe-EEEEeCCCcEEEEe-CCceEEEEec------CCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 228 HTAIVYSIDSHASGL-IVSGSEDRFAKIWK-DGVCVQSIEH------PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 228 h~~~v~~v~~~p~~~-l~s~s~Dg~I~iwd-~~~~~~~~~~------~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
....|.++...+++. |..|+.++-|..|| .......+.+ ...|.++...++|.+..|+. +.+.+|+..+++
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS 482 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe
Confidence 236799999988886 99999888899999 3333444432 34799999988999887877 558889988776
Q ss_pred ee
Q 004329 300 VA 301 (760)
Q Consensus 300 ~~ 301 (760)
..
T Consensus 483 ~~ 484 (795)
T 4a2l_A 483 FT 484 (795)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.99 E-value=6.4e-07 Score=93.88 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=142.5
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC-ceeE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG-KLVE 144 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~-~~~~ 144 (760)
...+..|+|++.. ++++...++.|..||..+++.. .+. ....+.++.++ ++.++.++.+ .|.+||.. ....
T Consensus 50 ~~egp~~~~~~~~----l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGT----AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTE----EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCE----EEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE
Confidence 4567889987653 4677778899999999877643 333 34678899887 6666666655 48889864 2222
Q ss_pred EeecC-----CcCeEEEEEeCCCcEEEEEC-------CCcEEEEeCCCceEEeecCCCceEEEEEeCCCe-E-EEEeCCC
Q 004329 145 FWEAH-----NAPIQTVIRIPSGEIVSGSS-------DTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-I-ISASHDC 210 (760)
Q Consensus 145 ~~~~~-----~~~v~~v~~~~~~~l~tgs~-------dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l-~s~s~dg 210 (760)
.+... ...+.++.+.++|+++.++. .+.|..++ ......+..+......++|+|++. + ++.+.++
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 23221 23588999999999665553 24566667 333333434445678999999875 4 4445678
Q ss_pred eEEEEecC---C-c-----eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-CCceEEEEecCC-cEEEEEEc-c
Q 004329 211 TIRLWALT---G-Q-----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFL-E 277 (760)
Q Consensus 211 ~I~iwd~~---~-~-----~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~~~~~~~~~~~~-~v~~v~~~-~ 277 (760)
.|.+||.. + . ....+........++++.++| +.++...++.|.+|| .++.+..+..+. .+++++|. +
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecC
Confidence 99999974 4 2 122222344567889999999 555555678899999 677777777554 79999998 8
Q ss_pred CCc-EEEEEc
Q 004329 278 NGD-IVTACS 286 (760)
Q Consensus 278 ~g~-lvt~~~ 286 (760)
+++ +++++.
T Consensus 282 d~~~L~vt~~ 291 (326)
T 2ghs_A 282 DASRLLVTSA 291 (326)
T ss_dssp TSCEEEEEEB
T ss_pred CCCEEEEEec
Confidence 876 544443
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.99 E-value=1.1e-07 Score=98.82 Aligned_cols=224 Identities=16% Similarity=0.190 Sum_probs=151.5
Q ss_pred eeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEEC-CCeEE
Q 004329 58 SKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSV-DSTLK 135 (760)
Q Consensus 58 ~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~-dg~v~ 135 (760)
...+..+........|++++.. +++++..++.|..|+. +++ ...+..+...+.++.++ ++.++++.. ++.|.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~----l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRT----LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTE----EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred eEEEecCCcCccCCeEeCCCCE----EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3445556667889999998863 4778888899999998 454 34555566778999998 555666654 57899
Q ss_pred EEECCceeEEeecC-----CcCeEEEEEeCCCcEEE-----EEC-------------CCcEEEEeCC-CceEEeecCCCc
Q 004329 136 RWRKGKLVEFWEAH-----NAPIQTVIRIPSGEIVS-----GSS-------------DTTIKLWKGK-KCAQTFVGHTDT 191 (760)
Q Consensus 136 vwd~~~~~~~~~~~-----~~~v~~v~~~~~~~l~t-----gs~-------------dg~i~iwd~~-~~~~~~~~h~~~ 191 (760)
.|+.......+..+ ...+..+.+.++|.+.. |.. .+.|..||.. .....+. ....
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~ 189 (305)
T 3dr2_A 111 RSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH 189 (305)
T ss_dssp EECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS
T ss_pred EECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC
Confidence 99875433333221 13466799999999665 332 2567777753 2233333 4456
Q ss_pred eEEEEEeCCCe-EEEEeCC------CeEEEEecCCceEEE---e-ecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCc
Q 004329 192 VRGLSVMPGVG-IISASHD------CTIRLWALTGQVLME---M-VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGV 259 (760)
Q Consensus 192 V~~l~~~~~~~-l~s~s~d------g~I~iwd~~~~~~~~---~-~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~ 259 (760)
...++|+|++. ++.+... +.|.+|++.+..+.. + .........+++.++|.+.+++.++ |.+|+ .++
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g~ 268 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDGQ 268 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSE-EEEECTTSC
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCc-EEEECCCCC
Confidence 78999999876 6666554 789999975432211 1 1123445678889999555555554 99999 788
Q ss_pred eEEEEecCCcEEEEEEccCCc-EEEEEcCCc
Q 004329 260 CVQSIEHPGCVWDAKFLENGD-IVTACSDGV 289 (760)
Q Consensus 260 ~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~ 289 (760)
.+..+..+..+.+++|.++++ +..++.++.
T Consensus 269 ~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 269 LLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred EEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 888888777899999999887 666665543
No 227
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.5e-06 Score=100.74 Aligned_cols=274 Identities=12% Similarity=0.052 Sum_probs=184.7
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeE--eeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKI--LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
...|.++...+++.|..|+.+ -+.+||..++....+..... .......|.++...+++. +..|+..+-|.+
T Consensus 210 ~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~------lWigt~~~Gl~~ 282 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK------LWIATELNGIMI 282 (781)
T ss_dssp CSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE------EEEEESSSCEEE
T ss_pred CCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC------EEEEeCCCCeEE
Confidence 357999998888888888876 68889976543111110000 011245788988776664 888888667889
Q ss_pred EECCCCceEEEEe--------------CCCccEEEEEec-CCeEEEEECCCeEEEEECCc-eeEEee----------cCC
Q 004329 97 WDLGSGEKVQTLQ--------------GHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-LVEFWE----------AHN 150 (760)
Q Consensus 97 wd~~~~~~~~~l~--------------~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-~~~~~~----------~~~ 150 (760)
+|..+++...... .....|.++..+ .+.+..|+.++-|..++... ....+. ...
T Consensus 283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN 362 (781)
T ss_dssp EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence 9987765432211 134578999887 67799999888888887652 222221 123
Q ss_pred cCeEEEEEeCCCcEEEEECCCcEEEEeCCCceEE-e----ecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEe
Q 004329 151 APIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQT-F----VGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEM 225 (760)
Q Consensus 151 ~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~~~-~----~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 225 (760)
..|.++...++|.+..|+.++-+..||....... + ......|.++...+++.+..|+.++-+..+|........+
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 5689999988899999998888999986543221 1 1234678999988888888899888899999765555554
Q ss_pred ec---CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEec------CCcEEEEEEccCCcEEEEEcCCcEEEEe
Q 004329 226 VG---HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH------PGCVWDAKFLENGDIVTACSDGVTRIWT 294 (760)
Q Consensus 226 ~~---h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~------~~~v~~v~~~~~g~lvt~~~dg~I~vw~ 294 (760)
.. ....|.++...+++.+..|+. +-+..|| .+........ ...|.++...++|.+..|+.++-+..|+
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 32 346899999988886666776 4588888 2232222211 3579999999999988888755577788
Q ss_pred CCCCee
Q 004329 295 VHSDKV 300 (760)
Q Consensus 295 ~~~~~~ 300 (760)
..+++.
T Consensus 522 ~~~~~~ 527 (781)
T 3v9f_A 522 PDMQLV 527 (781)
T ss_dssp TTCCEE
T ss_pred CCCCeE
Confidence 876654
No 228
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.7e-06 Score=99.29 Aligned_cols=275 Identities=12% Similarity=0.022 Sum_probs=188.8
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCcccee--ee---E----eeCCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHS--SK---I----LLGHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~--~~---~----~~~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
...|+++...++|.|..|+..+-|.+++..+........ .. . ..-....|.++...+++. +..|+
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~------lWigt 330 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN------IWIGT 330 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC------EEEEE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC------EEEEe
Confidence 457999999999999899986778889987554211111 00 0 011346789998877776 88899
Q ss_pred CCCeEEEEECCCCceEEEEe---------CCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEE-e----ecCCcCeE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQ---------GHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEF-W----EAHNAPIQ 154 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~---------~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~-~----~~~~~~v~ 154 (760)
.++-|..++..++....... .....|.++..+ ++.+..|+.++-+..|+....... + ......|.
T Consensus 331 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 331 WGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp BSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred cCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 88889999987654432211 123568999887 577999998888888987643222 1 12346789
Q ss_pred EEEEeCCCcEEEEECCCcEEEEeCCCc-eEEee---cCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeec-C-
Q 004329 155 TVIRIPSGEIVSGSSDTTIKLWKGKKC-AQTFV---GHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVG-H- 228 (760)
Q Consensus 155 ~v~~~~~~~l~tgs~dg~i~iwd~~~~-~~~~~---~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-h- 228 (760)
++...+++.+..|+.++-+..+|.... ...+. .....|.++...+++.+..|+. +-|..||........+.. .
T Consensus 411 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 411 CSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred EEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 999888899999998888999986532 22332 1346799999888888888887 568889875543333321 1
Q ss_pred ----CCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEec-----CCcEEEEEEccCCcEEEEEcCCcEEEEeCCCC
Q 004329 229 ----TAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH-----PGCVWDAKFLENGDIVTACSDGVTRIWTVHSD 298 (760)
Q Consensus 229 ----~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~~-----~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~ 298 (760)
...|.++...++|.+..|+.++-+..|| .......+.. ...|.++...++|.+..|+.+|.|..|+..++
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNF 569 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTC
T ss_pred cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCC
Confidence 4679999999888777777644477788 3344444532 34789999999999888888776588888776
Q ss_pred ee
Q 004329 299 KV 300 (760)
Q Consensus 299 ~~ 300 (760)
+.
T Consensus 570 ~~ 571 (781)
T 3v9f_A 570 DY 571 (781)
T ss_dssp CC
T ss_pred cE
Confidence 53
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.90 E-value=2.3e-07 Score=99.97 Aligned_cols=249 Identities=9% Similarity=-0.022 Sum_probs=160.2
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----------CCCeEEEEECCCCceEEEEe
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG----------MDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs----------~dg~I~vwd~~~~~~~~~l~ 109 (760)
++|.++|..+.+ ....+.....+ .++++|+++. ++++. .++.|.++|..+++.+..+.
T Consensus 99 ~~VsVID~~t~~-----vv~~I~vG~~P--gia~SpDgk~-----lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~ 166 (426)
T 3c75_H 99 TQQFVIDGSTGR-----ILGMTDGGFLP--HPVAAEDGSF-----FAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE 166 (426)
T ss_dssp EEEEEEETTTTE-----EEEEEEECSSC--EEEECTTSSC-----EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEECCCCE-----EEEEEECCCCC--ceEECCCCCE-----EEEEeccccccccCCCCCEEEEEECCCCcEEEEEE
Confidence 799999998765 44445433445 8999999984 44443 46789999999999888775
Q ss_pred CC-------CccEEEEEec--CCeEEEEEC--CCeEEEEECC--ceeEEeecCCcCeEEEEEeCCC--cEEEEECCCcEE
Q 004329 110 GH-------KLQVTGVTLD--NEDIVSSSV--DSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSG--EIVSGSSDTTIK 174 (760)
Q Consensus 110 ~h-------~~~V~~l~~~--~~~l~sgs~--dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~--~l~tgs~dg~i~ 174 (760)
-. ......+.++ +++++++.. ++.|.+.|.. +.+..+.... . ....|++ .+++.+.||.+.
T Consensus 167 v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 167 LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEE
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEE
Confidence 21 1223455665 666777764 5789999985 4444444322 1 2233333 266777788877
Q ss_pred EEeCCCc--eE----EeecCCCce-EEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeec-------------CCCcEE
Q 004329 175 LWKGKKC--AQ----TFVGHTDTV-RGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVG-------------HTAIVY 233 (760)
Q Consensus 175 iwd~~~~--~~----~~~~h~~~V-~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~-------------h~~~v~ 233 (760)
+.+.... .. .+.....++ ..+.+.+++. ++..+..+.+.+.|..+........ ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 7775221 11 111111121 1345666544 6666788999999986543322110 001112
Q ss_pred EEEEeCCC-eEEEEe----------CCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc--EEEEE-cCCcEEEEeCCC
Q 004329 234 SIDSHASG-LIVSGS----------EDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTAC-SDGVTRIWTVHS 297 (760)
Q Consensus 234 ~v~~~p~~-~l~s~s----------~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~-~dg~I~vw~~~~ 297 (760)
.++++|++ .+++.. .++.|.+.| +.+.+..+......++++|+|||+ ++++. .++.|.++|..+
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 36889987 444432 135799999 788888888777899999999998 55555 489999999999
Q ss_pred Ceeechh
Q 004329 298 DKVADSL 304 (760)
Q Consensus 298 ~~~~~~~ 304 (760)
++.+.++
T Consensus 403 ~kvv~tI 409 (426)
T 3c75_H 403 GEELRSV 409 (426)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 9987654
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.87 E-value=3.2e-07 Score=95.18 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=148.7
Q ss_pred EEeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe-
Q 004329 13 SELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG- 89 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs- 89 (760)
..+..+.....+..|++++. ++++..++.|..|+.. +. ...+..+...+..+++.+++. ++++.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------~~~~~~~~~~~~gl~~d~dG~------l~v~~~ 104 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------VDVLLDATAFTNGNAVDAQQR------LVHCEH 104 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC------EEEEEESCSCEEEEEECTTSC------EEEEET
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC------EEEEeCCCCccceeeECCCCC------EEEEEC
Confidence 44555666788999999887 6777788999999874 43 223444667799999999887 44454
Q ss_pred CCCeEEEEECCCCceEEEEeCC----CccEEEEEec-CCeEEE-----EEC-------------CCeEEEEECC-ceeEE
Q 004329 90 MDTMVLVWDLGSGEKVQTLQGH----KLQVTGVTLD-NEDIVS-----SSV-------------DSTLKRWRKG-KLVEF 145 (760)
Q Consensus 90 ~dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~~-~~~l~s-----gs~-------------dg~v~vwd~~-~~~~~ 145 (760)
.++.|.+|+.+ ++........ ...+..+.++ ++.++. |.. .+.|..||.. .....
T Consensus 105 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 105 GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 55789999986 5533222111 1235567787 444444 332 2457777762 22223
Q ss_pred eecCCcCeEEEEEeCCCc-EEEEECC------CcEEEEeCCCc-e---EEe-ecCCCceEEEEEeCCCeEEEEeCCCeEE
Q 004329 146 WEAHNAPIQTVIRIPSGE-IVSGSSD------TTIKLWKGKKC-A---QTF-VGHTDTVRGLSVMPGVGIISASHDCTIR 213 (760)
Q Consensus 146 ~~~~~~~v~~v~~~~~~~-l~tgs~d------g~i~iwd~~~~-~---~~~-~~h~~~V~~l~~~~~~~l~s~s~dg~I~ 213 (760)
+. .......++++|+++ ++.+... +.|..|+.... . +.+ .........+++.+++.+.+++.+| |.
T Consensus 184 ~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~g-v~ 261 (305)
T 3dr2_A 184 MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG-VC 261 (305)
T ss_dssp EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSE-EE
T ss_pred Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCc-EE
Confidence 33 444567899999987 6666554 68999985421 1 112 1123445678899988877777554 99
Q ss_pred EEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEE
Q 004329 214 LWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKI 254 (760)
Q Consensus 214 iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~i 254 (760)
+|+.+++.+..+..+. .+.+++|.+++ .|+.++.++..++
T Consensus 262 ~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 262 VFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 9999998888877655 58889999887 7777776654443
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.83 E-value=1.6e-07 Score=99.36 Aligned_cols=260 Identities=10% Similarity=0.010 Sum_probs=157.2
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCe-EEEEEC--CCeEEEEeCCCCCCcccee-eeEeeCCCCCeEEEEEeCCCCCCCCcE
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVG-IATSSR--DRTVRFWSLDPSDKRKYHS-SKILLGHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~--Dg~i~iWd~~~~~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
++.+.++. ..+..|+++++|+ +++..+ ++.++||.+.++....+.. ......|...+.++++.+++.
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~------ 79 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI------ 79 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE------
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc------
Confidence 44455544 7899999999999 556432 3436667665332110100 011224567899999999876
Q ss_pred EEEEe-C-----CCeEEEEECCCCceEEEEeCC------CccEEEEEec--CCeE-EEEE---CCCeEEEEECC--ceeE
Q 004329 85 LVSGG-M-----DTMVLVWDLGSGEKVQTLQGH------KLQVTGVTLD--NEDI-VSSS---VDSTLKRWRKG--KLVE 144 (760)
Q Consensus 85 l~sgs-~-----dg~I~vwd~~~~~~~~~l~~h------~~~V~~l~~~--~~~l-~sgs---~dg~v~vwd~~--~~~~ 144 (760)
|+... . ++.|.+||+.+++.+..+..+ ...+..++++ ++.+ ++.+ .++.|.+||.. +..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 44443 2 578999999999877766532 2345778887 4564 4444 57899999974 4444
Q ss_pred EeecCCcCeE-EEEEeCCCc-EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCe-EEEEeCCC-eEEEEec---
Q 004329 145 FWEAHNAPIQ-TVIRIPSGE-IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG-IISASHDC-TIRLWAL--- 217 (760)
Q Consensus 145 ~~~~~~~~v~-~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~-l~s~s~dg-~I~iwd~--- 217 (760)
.+..|..... ...+..+|. +.+.+.++.++.|. ..+..++++|++. ++.+..++ .+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 4443321110 022333554 44566777765553 2467899999875 77766665 5555542
Q ss_pred C-Cc-----eE--EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC--CceEEEEec--CCcEEEEEEccCCcE-EE
Q 004329 218 T-GQ-----VL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD--GVCVQSIEH--PGCVWDAKFLENGDI-VT 283 (760)
Q Consensus 218 ~-~~-----~~--~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~--~~~~~~~~~--~~~v~~v~~~~~g~l-vt 283 (760)
. +. .. ....++......++++++| ++++...++.|.+||. ++....... -..+.+++|.++|.+ ++
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 1 10 00 0122344456678999999 7788888899999995 543333333 236899999998884 44
Q ss_pred EEcCCc
Q 004329 284 ACSDGV 289 (760)
Q Consensus 284 ~~~dg~ 289 (760)
.+..+.
T Consensus 308 ~~~~~~ 313 (343)
T 2qe8_A 308 CNQLHH 313 (343)
T ss_dssp ECCGGG
T ss_pred eCcccc
Confidence 443333
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.82 E-value=7.8e-07 Score=95.80 Aligned_cols=249 Identities=12% Similarity=-0.016 Sum_probs=161.4
Q ss_pred CccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEee-C-----
Q 004329 1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILL-G----- 63 (760)
Q Consensus 1 I~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~-~----- 63 (760)
|.++|..+++.+.++..-..+ .++++||++ ++.+. .++.|.++|..+.+ ....+. +
T Consensus 101 VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~-----vv~~I~v~g~~r~ 173 (426)
T 3c75_H 101 QFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL-----PIADIELPDAPRF 173 (426)
T ss_dssp EEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-----EEEEEEETTCCCC
T ss_pred EEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc-----EEEEEECCCcccc
Confidence 356789999999999855556 899999999 66554 47899999998765 233322 1
Q ss_pred -CCCCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEEC
Q 004329 64 -HTSFVGPLAWISPNEEFPEGGLVSGGM--DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRK 139 (760)
Q Consensus 64 -h~~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~ 139 (760)
.......+.|+|+++ +++++.. ++.|.+.|+.+++.+.++..... ..+... ...+++.+.||.+.+.+.
T Consensus 174 ~~g~~P~~~~~spDGk-----~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 174 LVGTYQWMNALTPDNK-----NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp CBSCCGGGSEECTTSS-----EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred ccCCCcceEEEcCCCC-----EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEEC
Confidence 123345789999998 4666653 68999999999999888874322 222222 455778888888877776
Q ss_pred C--ceeEE----eecCCcCe-EEEEEeCCCc-EEEEECCCcEEEEeCCCceE----Eeec----------CCCceEEEEE
Q 004329 140 G--KLVEF----WEAHNAPI-QTVIRIPSGE-IVSGSSDTTIKLWKGKKCAQ----TFVG----------HTDTVRGLSV 197 (760)
Q Consensus 140 ~--~~~~~----~~~~~~~v-~~v~~~~~~~-l~tgs~dg~i~iwd~~~~~~----~~~~----------h~~~V~~l~~ 197 (760)
. +.... +.....++ ..+.+.+++. ++..+..+.+.+.|...... .+.- .......+++
T Consensus 247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 247 ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence 3 22211 11111221 1245677755 55666788899998543211 1110 0111223688
Q ss_pred eCCCe-EEEE-eC---------CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC--eEEEEe-CCCcEEEEe--CCce
Q 004329 198 MPGVG-IISA-SH---------DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG--LIVSGS-EDRFAKIWK--DGVC 260 (760)
Q Consensus 198 ~~~~~-l~s~-s~---------dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s-~Dg~I~iwd--~~~~ 260 (760)
+|++. +++. .+ ++.|.++|.. .+.+.++.. .....++.++|++ ++++.. .++.|.++| +++.
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 88644 4443 21 3579999974 556666542 2358899999998 566766 599999999 7788
Q ss_pred EEEE
Q 004329 261 VQSI 264 (760)
Q Consensus 261 ~~~~ 264 (760)
+.++
T Consensus 406 v~tI 409 (426)
T 3c75_H 406 LRSV 409 (426)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8887
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.81 E-value=6.2e-07 Score=104.40 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=147.0
Q ss_pred CCCCCeEEEEEeCCCCCCCCcEEE-EEeC----CCeEEEEECCCCceEEE-EeCCCccEEEEEe-cCCeEEEEECCCe--
Q 004329 63 GHTSFVGPLAWISPNEEFPEGGLV-SGGM----DTMVLVWDLGSGEKVQT-LQGHKLQVTGVTL-DNEDIVSSSVDST-- 133 (760)
Q Consensus 63 ~h~~~V~~l~~~~~~~~~~~~~l~-sgs~----dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~-~~~~l~sgs~dg~-- 133 (760)
+|...+..++|+|+++. ++ +.+. ...|++||+.+++.+.. +.... ...++| +++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~-----lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k--~~~~~WsDg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRI-----LAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK--FSGISWLGNEGFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSE-----EEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE--SCCCEEETTTEEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCE-----EEEEEecCCCceEEEEEEECCCCCCCccccCCce--eccEEEeCCCEEEEEEecCccc
Confidence 35567889999999983 44 3332 35799999999986543 22211 123444 4667888887743
Q ss_pred -----------EEEEECCce----eEEeec---CCcCeEEEEEeCCCc-E-EEEEC---CCcEEEEeCCC---ceEEeec
Q 004329 134 -----------LKRWRKGKL----VEFWEA---HNAPIQTVIRIPSGE-I-VSGSS---DTTIKLWKGKK---CAQTFVG 187 (760)
Q Consensus 134 -----------v~vwd~~~~----~~~~~~---~~~~v~~v~~~~~~~-l-~tgs~---dg~i~iwd~~~---~~~~~~~ 187 (760)
|++|+.+.. ...+.. |......+.++|+|+ + ++.+. .+.|+++|... ....+..
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 889987632 223332 344577899999998 3 33332 35889999643 4566677
Q ss_pred CCCceEEEEEeCCCeEEEEe-CC---CeEEEEecCCce---EEEeecCCCcEEEEEEeCCC-eEEE-EeCCC--cEEEEe
Q 004329 188 HTDTVRGLSVMPGVGIISAS-HD---CTIRLWALTGQV---LMEMVGHTAIVYSIDSHASG-LIVS-GSEDR--FAKIWK 256 (760)
Q Consensus 188 h~~~V~~l~~~~~~~l~s~s-~d---g~I~iwd~~~~~---~~~~~~h~~~v~~v~~~p~~-~l~s-~s~Dg--~I~iwd 256 (760)
+...........++.++..+ .+ +.|..+|+.+.. ...+..|...+. .|++++ .|+. ...++ .|++|+
T Consensus 279 ~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 279 DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 77766665334456654444 33 679999986533 256666766655 778877 5544 44554 688888
Q ss_pred -CCceEEEEec--CCcEEEEEEccCCc-EEEEEcC----CcEEEEeCCCCee
Q 004329 257 -DGVCVQSIEH--PGCVWDAKFLENGD-IVTACSD----GVTRIWTVHSDKV 300 (760)
Q Consensus 257 -~~~~~~~~~~--~~~v~~v~~~~~g~-lvt~~~d----g~I~vw~~~~~~~ 300 (760)
.+...+.+.. .+.+..+.++++++ ++...++ +.+..||+.+++.
T Consensus 357 ~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 5556666653 44777888888887 5544444 8899999887653
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.80 E-value=3e-07 Score=97.37 Aligned_cols=253 Identities=10% Similarity=-0.085 Sum_probs=161.7
Q ss_pred EEEEECCC----eEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEe----------CCCeEEEEE
Q 004329 33 IATSSRDR----TVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGG----------MDTMVLVWD 98 (760)
Q Consensus 33 l~tgs~Dg----~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs----------~dg~I~vwd 98 (760)
+++...++ +|.++|..+++ ....+.....+ .+.++|++.. ++++. .++.|.+||
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~-----v~~~i~vG~~P--~i~~spDg~~-----lyVan~~~~r~~~G~~~~~VsviD 102 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGV-----TLGHSLGAFLS--LAVAGHSGSD-----FALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTE-----EEEEEEECTTC--EEEECTTSSC-----EEEEEEEETTTTSSSEEEEEEEEC
T ss_pred EEECCccCCccceEEEEECCCCe-----EEEEEeCCCCC--ceEECCCCCE-----EEEEcccccccccCCCCCEEEEEE
Confidence 55655565 88899998765 44455444445 7999999984 55554 478999999
Q ss_pred CCCCceEEEEeCCC-------ccEEEEEec--CCeEEEEEC--CCeEEE--EECCceeEEeecCCcCeEEEEEeCCC--c
Q 004329 99 LGSGEKVQTLQGHK-------LQVTGVTLD--NEDIVSSSV--DSTLKR--WRKGKLVEFWEAHNAPIQTVIRIPSG--E 163 (760)
Q Consensus 99 ~~~~~~~~~l~~h~-------~~V~~l~~~--~~~l~sgs~--dg~v~v--wd~~~~~~~~~~~~~~v~~v~~~~~~--~ 163 (760)
+.+++.+.++..+. .....+.++ +++++++.. +..+.+ +|... +..+.... . ....|++ .
T Consensus 103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~-~---~~~~p~g~~~ 177 (368)
T 1mda_H 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSAS-C---FHIHPGAAAT 177 (368)
T ss_dssp TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSS-C---CCCEEEETTE
T ss_pred CCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCC-c---eEEccCCCeE
Confidence 99999999886330 223456665 667777765 467888 88866 44443211 1 1123443 2
Q ss_pred EEEEECCCcEEEEeCCC----ceEE-------eecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCce---EEEeec--
Q 004329 164 IVSGSSDTTIKLWKGKK----CAQT-------FVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQV---LMEMVG-- 227 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~----~~~~-------~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~-- 227 (760)
+++.+.|+.+.+.|... ..+. +.....+. ....++.++..+. +.+.+.|..+.. +..+.-
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~ 253 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE 253 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc
Confidence 66777888887787654 1111 11112333 3333555666666 999999985432 221110
Q ss_pred -----CC---CcEEEEEEeCCC-eEEEE-e---C-----CCcEEEEe--CCceEEEEecCCcEEEEEEccCCc--EEEEE
Q 004329 228 -----HT---AIVYSIDSHASG-LIVSG-S---E-----DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTAC 285 (760)
Q Consensus 228 -----h~---~~v~~v~~~p~~-~l~s~-s---~-----Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~--lvt~~ 285 (760)
+. .....+.++|++ .++.+ . . ++.+.++| +.+.+..+......+.++|+|||+ +++..
T Consensus 254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEcc
Confidence 11 111126799998 55543 3 2 23566999 677888887666899999999998 55666
Q ss_pred -cCCcEEEEeCCCCeeechhhh
Q 004329 286 -SDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 286 -~dg~I~vw~~~~~~~~~~~~~ 306 (760)
.++.|.++|+.+++.+.++..
T Consensus 334 ~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 334 AGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp TTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCeEEEEECCCCcEEEEEEC
Confidence 499999999999998876653
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=9.2e-07 Score=102.19 Aligned_cols=264 Identities=10% Similarity=0.057 Sum_probs=168.3
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC-----------CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS-----------FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
++.++.++.++.|.-+|..+++. ......... ....+++. ++.++.++.|+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR-----IWTYDPQIDRSTGFKGCCDVVNRGVALW-------KGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE-----EEEECCCCCGGGGGGSSSCSCCCCCEEE-------TTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE-----EEEEcCCCCccccccccccCCCCCceEE-------CCEEEEEcCCCEEEEEE
Confidence 56688888899999999987762 222211110 00122221 23589999999999999
Q ss_pred CCCCceEEEEeCC-C----ccEE-EEEecCCeEEEEEC------CCeEEEEEC--CceeEEeecCCcC------------
Q 004329 99 LGSGEKVQTLQGH-K----LQVT-GVTLDNEDIVSSSV------DSTLKRWRK--GKLVEFWEAHNAP------------ 152 (760)
Q Consensus 99 ~~~~~~~~~l~~h-~----~~V~-~l~~~~~~l~sgs~------dg~v~vwd~--~~~~~~~~~~~~~------------ 152 (760)
..+|+.+..+..+ . ..+. .....++.++.++. +|.|+.||. ++.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9999999888755 2 1121 22234677777664 799999986 4555554432111
Q ss_pred --------------------eEEEEEeCCCc-EEEEECCC-------------------cEEEEeCCCceE--Eeec--C
Q 004329 153 --------------------IQTVIRIPSGE-IVSGSSDT-------------------TIKLWKGKKCAQ--TFVG--H 188 (760)
Q Consensus 153 --------------------v~~v~~~~~~~-l~tgs~dg-------------------~i~iwd~~~~~~--~~~~--h 188 (760)
...+.+.+++. ++.++.++ .|..+|..+... .+.. |
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 12467777655 56666553 488888654333 3332 2
Q ss_pred C-------CceEEEEEeCCC----eEEEEeCCCeEEEEec-CCceEEEeecCC-----------CcE-------------
Q 004329 189 T-------DTVRGLSVMPGV----GIISASHDCTIRLWAL-TGQVLMEMVGHT-----------AIV------------- 232 (760)
Q Consensus 189 ~-------~~V~~l~~~~~~----~l~s~s~dg~I~iwd~-~~~~~~~~~~h~-----------~~v------------- 232 (760)
. ....-+....++ .++.++.+|.++++|. +|+.+....... ..+
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 1 111122222244 3888999999999996 677776654211 111
Q ss_pred -----------EEEEEeCCC-eEEEEeC-------------------------------------------CCcEEEEe-
Q 004329 233 -----------YSIDSHASG-LIVSGSE-------------------------------------------DRFAKIWK- 256 (760)
Q Consensus 233 -----------~~v~~~p~~-~l~s~s~-------------------------------------------Dg~I~iwd- 256 (760)
..++++|++ ++++... .|.|..||
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 146788876 5555432 27899999
Q ss_pred -CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 257 -DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 257 -~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
+++.+..+.+..+++...+..++. +++++.||.+++||..+++.+..+.
T Consensus 465 ~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 465 VAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 788888888777777766776666 7778889999999999999887654
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.76 E-value=3e-07 Score=97.40 Aligned_cols=254 Identities=9% Similarity=-0.113 Sum_probs=161.2
Q ss_pred ccccCCCceEeEEeccCCCCEEEEEEcCCCe-EEEEE----------CCCeEEEEeCCCCCCccceeeeEeeCC------
Q 004329 2 MDIDFKEYQLSSELRGHEDDVRGICVCDNVG-IATSS----------RDRTVRFWSLDPSDKRKYHSSKILLGH------ 64 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~h------ 64 (760)
.++|..+++.+.++..-..+ .+.++||++ ++.+. .+++|.+||+.+.+ ....+..+
T Consensus 49 svID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-----vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-----PIADIELPDAPRFS 121 (368)
T ss_dssp EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-----EEEEEEETTSCSCC
T ss_pred EEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-----EEEEEECCCccccc
Confidence 36789999999999855556 799999998 66665 47899999999776 34444322
Q ss_pred -CCCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEE--EECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEE
Q 004329 65 -TSFVGPLAWISPNEEFPEGGLVSGGM--DTMVLV--WDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWR 138 (760)
Q Consensus 65 -~~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~v--wd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd 138 (760)
......++++|+++. ++++.. +..+.+ +|..+ +..+.... . ..+..+ ...+++.+.||.+.+.+
T Consensus 122 ~g~~P~~ia~SpDGk~-----lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 122 VGPRVHIIGNCASSAC-----LLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp BSCCTTSEEECTTSSC-----EEEEECSSSCEEEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEE
T ss_pred cCCCcceEEEcCCCCE-----EEEEccCCCCeEEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEE
Confidence 123567899999984 666653 467888 99876 44443211 1 112233 34467777888887777
Q ss_pred CCc-----eeEE------eecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCce----EEeec-------C---CCceE
Q 004329 139 KGK-----LVEF------WEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCA----QTFVG-------H---TDTVR 193 (760)
Q Consensus 139 ~~~-----~~~~------~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~~----~~~~~-------h---~~~V~ 193 (760)
... .... +.....+. .....+.++..+. +.+.+.|..... ..+.- + .....
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred CccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 654 1111 11112333 2333344565556 899999964321 11110 0 11122
Q ss_pred EEEEeCCCe-EEEEeC---------CCeEEEEecC-CceEEEeecCCCcEEEEEEeCCC--eEEEEe-CCCcEEEEe--C
Q 004329 194 GLSVMPGVG-IISASH---------DCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG--LIVSGS-EDRFAKIWK--D 257 (760)
Q Consensus 194 ~l~~~~~~~-l~s~s~---------dg~I~iwd~~-~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s-~Dg~I~iwd--~ 257 (760)
.++++|++. ++.+.. ++.+.++|.. .+.+.++... ....++.++|+| .+++.. .++.|.++| +
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 267999755 554332 2356699975 4555555432 368899999998 566666 599999999 7
Q ss_pred CceEEEEecCCcEEEEEEcc
Q 004329 258 GVCVQSIEHPGCVWDAKFLE 277 (760)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~~ 277 (760)
++.+.++.-....+.+++.+
T Consensus 347 ~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 347 DQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp CEEEEECCCCSCCCEEECCC
T ss_pred CcEEEEEECCCCCCEEEeec
Confidence 88888888777777777754
No 237
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.69 E-value=1.8e-06 Score=100.47 Aligned_cols=225 Identities=12% Similarity=0.133 Sum_probs=139.5
Q ss_pred cCCCCEEEEEEcCCCe-EEE-----EECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 17 GHEDDVRGICVCDNVG-IAT-----SSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~-l~t-----gs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
+|...+.+++|+|||+ |+- |+.+.+|++||+.+++. .. ..+.. .....++|+ +++ .|+.++.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~-~~~~~--~k~~~~~Ws-Dg~-----~l~y~~~ 193 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LE-TPLKD--VKFSGISWL-GNE-----GFFYSSY 193 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EE-EEEEE--EESCCCEEE-TTT-----EEEEEES
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---Cc-cccCC--ceeccEEEe-CCC-----EEEEEEe
Confidence 4666788999999999 553 22335799999997762 11 11111 113467899 887 4666666
Q ss_pred CC-------------eEEEEECCCCce--EEEE--eC-CCccEEEEEec--CCeEE-EEEC---CCeEEEEECCc---ee
Q 004329 91 DT-------------MVLVWDLGSGEK--VQTL--QG-HKLQVTGVTLD--NEDIV-SSSV---DSTLKRWRKGK---LV 143 (760)
Q Consensus 91 dg-------------~I~vwd~~~~~~--~~~l--~~-h~~~V~~l~~~--~~~l~-sgs~---dg~v~vwd~~~---~~ 143 (760)
+. .|++|++.++.. ...+ .. |...+.++.++ +++++ +.+. ++.+++||... ..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 63 499999987642 2233 33 44557788887 44443 3332 24788998642 45
Q ss_pred EEeecCCcCeEEEEEeCC-CcEE-EEECC---CcEEEEeCCCc----eEEeecCCCceEEEEEeCCC-eEEEEe-CCC--
Q 004329 144 EFWEAHNAPIQTVIRIPS-GEIV-SGSSD---TTIKLWKGKKC----AQTFVGHTDTVRGLSVMPGV-GIISAS-HDC-- 210 (760)
Q Consensus 144 ~~~~~~~~~v~~v~~~~~-~~l~-tgs~d---g~i~iwd~~~~----~~~~~~h~~~V~~l~~~~~~-~l~s~s-~dg-- 210 (760)
..+..+....... +.++ +.++ ....+ +.|..+|.... .+.+..|...+. .+++++ .++... .++
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 5666666666555 4444 4454 33333 57888886542 246666766665 677744 455444 454
Q ss_pred eEEEEecCCceEEEee-cCCCcEEEEEEeCCC-eEEEEeCC----CcEEEEe
Q 004329 211 TIRLWALTGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSED----RFAKIWK 256 (760)
Q Consensus 211 ~I~iwd~~~~~~~~~~-~h~~~v~~v~~~p~~-~l~s~s~D----g~I~iwd 256 (760)
.|++||+.+.....+. .+...+..+.+++++ .++....+ +++..||
T Consensus 351 ~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 351 RVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp EEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 6889999887766664 344567778888877 44433333 7788888
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.67 E-value=3.5e-06 Score=97.58 Aligned_cols=264 Identities=10% Similarity=0.051 Sum_probs=162.6
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC----------Ce-EEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS----------FV-GPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
++.++.++.++.|.-+|..+++. ......+.. .+ ..+++. ++.++.++.|+.|+.+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~v~v~~~dg~l~AlD 137 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL-----IWKYDPQSDRHRAGEACCDAVNRGVAVW-------KGKVYVGVLDGRLEAID 137 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE-----EEEECCCCCGGGGGGCTTCSCCCCCEEE-------TTEEEEECTTSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce-----eEEEcCCCCccccccccccCCCCccEEE-------CCEEEEEccCCEEEEEE
Confidence 56688888899999999988872 222221110 00 111221 23589999999999999
Q ss_pred CCCCceEEEEeCC--C---ccEE-EEEecCCeEEEEE------CCCeEEEEEC--CceeEEeecCC--------------
Q 004329 99 LGSGEKVQTLQGH--K---LQVT-GVTLDNEDIVSSS------VDSTLKRWRK--GKLVEFWEAHN-------------- 150 (760)
Q Consensus 99 ~~~~~~~~~l~~h--~---~~V~-~l~~~~~~l~sgs------~dg~v~vwd~--~~~~~~~~~~~-------------- 150 (760)
..+|+.+..+... . ..+. +-...++.++.++ .+|.|+.||. ++.+..+....
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 138 AKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp TTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 9999998887642 1 1111 1122366666664 3789999986 45555543210
Q ss_pred ----------------cCe-EEEEEeCCCc-EEEEECCCc-------------------EEEEeCCCce--EEeec--CC
Q 004329 151 ----------------API-QTVIRIPSGE-IVSGSSDTT-------------------IKLWKGKKCA--QTFVG--HT 189 (760)
Q Consensus 151 ----------------~~v-~~v~~~~~~~-l~tgs~dg~-------------------i~iwd~~~~~--~~~~~--h~ 189 (760)
..+ ..+.+.+++. ++.++.++. |..+|..+.. -.+.. |.
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d 297 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD 297 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc
Confidence 011 1467777644 667776653 8899965433 33332 21
Q ss_pred -------CceEEEEEeCCC----eEEEEeCCCeEEEEec-CCceEEEeecCC-CcE------------------------
Q 004329 190 -------DTVRGLSVMPGV----GIISASHDCTIRLWAL-TGQVLMEMVGHT-AIV------------------------ 232 (760)
Q Consensus 190 -------~~V~~l~~~~~~----~l~s~s~dg~I~iwd~-~~~~~~~~~~h~-~~v------------------------ 232 (760)
.++.......++ .++.++.+|.++++|. +|+.+....... ...
T Consensus 298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~ 377 (689)
T 1yiq_A 298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGK 377 (689)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCC
Confidence 111111222233 3888999999999995 576664332110 000
Q ss_pred --------------EEEEEeCCC-eEEEEeC---------------------------------------------CCcE
Q 004329 233 --------------YSIDSHASG-LIVSGSE---------------------------------------------DRFA 252 (760)
Q Consensus 233 --------------~~v~~~p~~-~l~s~s~---------------------------------------------Dg~I 252 (760)
..++++|+. ++++... +|.|
T Consensus 378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l 457 (689)
T 1yiq_A 378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL 457 (689)
T ss_dssp CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence 126778876 5555421 3779
Q ss_pred EEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 253 KIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 253 ~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
+.|| +++.+..+.+..+++.-.+...+. +++++.||.++.||.++|+.+..+.
T Consensus 458 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 458 IAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 9999 788888887666555555555555 7788889999999999999876543
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=3.1e-06 Score=97.81 Aligned_cols=266 Identities=11% Similarity=0.086 Sum_probs=160.8
Q ss_pred ccccCCCceEeEEeccCCC-----------CEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC-C----
Q 004329 2 MDIDFKEYQLSSELRGHED-----------DVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH-T---- 65 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~-----------~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h-~---- 65 (760)
+.+|..+.+.+.++..... ..+.+++ .+++++.++.|+.|..+|..+++ .......+ .
T Consensus 90 ~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~-----~~W~~~~~~~~~~~ 163 (677)
T 1kb0_A 90 HAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGK-----EVWHQNTFEGQKGS 163 (677)
T ss_dssp EEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCC-----EEEEEETTTTCCSS
T ss_pred EEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCC-----EEeeecCCcCcCcC
Confidence 5578888888888775422 1123333 35568899999999999999887 22333222 1
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeC------CCeEEEEECCCCceEEEEeCCCcc-------------------------
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGM------DTMVLVWDLGSGEKVQTLQGHKLQ------------------------- 114 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~h~~~------------------------- 114 (760)
..+.+--...+ +.++.++. +|.|+.||..+|+.+..+......
T Consensus 164 ~~~~~~p~v~~------~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~ 237 (677)
T 1kb0_A 164 LTITGAPRVFK------GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWE 237 (677)
T ss_dssp CBCCSCCEEET------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHH
T ss_pred cccccCcEEEC------CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeE
Confidence 11111000112 24666654 799999999999998887642211
Q ss_pred -------EEEEEec--CCeEEEEECCC-------------------eEEEEEC--CceeEEeec--CC-------cCeEE
Q 004329 115 -------VTGVTLD--NEDIVSSSVDS-------------------TLKRWRK--GKLVEFWEA--HN-------APIQT 155 (760)
Q Consensus 115 -------V~~l~~~--~~~l~sgs~dg-------------------~v~vwd~--~~~~~~~~~--~~-------~~v~~ 155 (760)
...++++ ++.++.++.++ .|..+|. ++.+..++. |. .....
T Consensus 238 ~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l 317 (677)
T 1kb0_A 238 AGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL 317 (677)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE
T ss_pred eCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE
Confidence 0134554 67788877664 4888876 455555443 21 11222
Q ss_pred EEEeCCC---c-EEEEECCCcEEEEeCCC--ceEEeecCC-----------Cce------------------------EE
Q 004329 156 VIRIPSG---E-IVSGSSDTTIKLWKGKK--CAQTFVGHT-----------DTV------------------------RG 194 (760)
Q Consensus 156 v~~~~~~---~-l~tgs~dg~i~iwd~~~--~~~~~~~h~-----------~~V------------------------~~ 194 (760)
+....+| . ++.++.+|.++++|..+ .+..+.... .++ ..
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 2333355 3 77889999999999543 332222110 011 14
Q ss_pred EEEeCCCe-EEEEeC-------------------------------------------CCeEEEEec-CCceEEEeecCC
Q 004329 195 LSVMPGVG-IISASH-------------------------------------------DCTIRLWAL-TGQVLMEMVGHT 229 (760)
Q Consensus 195 l~~~~~~~-l~s~s~-------------------------------------------dg~I~iwd~-~~~~~~~~~~h~ 229 (760)
++++|+.. +++... .|.|..||+ +++.+.+.. +.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence 67888544 555433 278999997 466666654 33
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEecCC--cEEEEEEccCCc
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG--CVWDAKFLENGD 280 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~--~v~~v~~~~~g~ 280 (760)
..+.+..+...+ .++.++.||.+++|| +++.+..+..+. ...-+.|..+|+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 333444444455 888889999999999 889998887443 234456678887
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.59 E-value=6.6e-06 Score=95.24 Aligned_cols=269 Identities=12% Similarity=0.096 Sum_probs=158.7
Q ss_pred ccccCCCceEeEEeccCCCC----------E-EEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeC--CCCCe
Q 004329 2 MDIDFKEYQLSSELRGHEDD----------V-RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG--HTSFV 68 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~----------V-~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~--h~~~V 68 (760)
+.+|..+.+.+.++..+... + ..+++ .+++++.++.|+.|..+|..+++. ...... +....
T Consensus 83 ~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~-----~W~~~~~~~~~~~ 156 (689)
T 1yiq_A 83 YALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQR-----AWSVDTRADHKRS 156 (689)
T ss_dssp EEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCE-----EEEEECCSCTTSC
T ss_pred EEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCE-----eeeecCcCCCCCC
Confidence 45788888888888654321 1 12233 356689999999999999998872 222211 11000
Q ss_pred EEEEEeCCCCCCCCcEEEEEe------CCCeEEEEECCCCceEEEEeCCC---c--------------------------
Q 004329 69 GPLAWISPNEEFPEGGLVSGG------MDTMVLVWDLGSGEKVQTLQGHK---L-------------------------- 113 (760)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~sgs------~dg~I~vwd~~~~~~~~~l~~h~---~-------------------------- 113 (760)
..+...|. ..++.++.++ .+|.|+.||..+|+.+..+.... .
T Consensus 157 ~~~~~sP~---v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g 233 (689)
T 1yiq_A 157 YTITGAPR---VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGG 233 (689)
T ss_dssp CBCCSCCE---EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEE
T ss_pred ccccCCcE---EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCC
Confidence 00000110 0012355554 37899999999999988775210 0
Q ss_pred --cEEEEEec--CCeEEEEECCCe-------------------EEEEEC--CceeEEeec--CC-------cCeEEEEEe
Q 004329 114 --QVTGVTLD--NEDIVSSSVDST-------------------LKRWRK--GKLVEFWEA--HN-------APIQTVIRI 159 (760)
Q Consensus 114 --~V~~l~~~--~~~l~sgs~dg~-------------------v~vwd~--~~~~~~~~~--~~-------~~v~~v~~~ 159 (760)
....++++ .+.++.++.++. |..||. ++.+..++. |. .+.......
T Consensus 234 ~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~ 313 (689)
T 1yiq_A 234 GTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP 313 (689)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred CccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec
Confidence 01134554 577888888764 888886 456655543 21 112222222
Q ss_pred CCCc----EEEEECCCcEEEEeCCCceEE--eec-------C---------------------CC-----------ceEE
Q 004329 160 PSGE----IVSGSSDTTIKLWKGKKCAQT--FVG-------H---------------------TD-----------TVRG 194 (760)
Q Consensus 160 ~~~~----l~tgs~dg~i~iwd~~~~~~~--~~~-------h---------------------~~-----------~V~~ 194 (760)
.+|. ++.++.+|.++++|..+.... ... + .. .-..
T Consensus 314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~ 393 (689)
T 1yiq_A 314 IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP 393 (689)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSC
T ss_pred cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCc
Confidence 2453 678889999999995432221 100 0 00 0112
Q ss_pred EEEeCCCe-EEEEeC---------------------------------------------CCeEEEEec-CCceEEEeec
Q 004329 195 LSVMPGVG-IISASH---------------------------------------------DCTIRLWAL-TGQVLMEMVG 227 (760)
Q Consensus 195 l~~~~~~~-l~s~s~---------------------------------------------dg~I~iwd~-~~~~~~~~~~ 227 (760)
++++|+.. +++... +|.|+.||+ +++.+.+...
T Consensus 394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 67777544 444321 378999997 5777777665
Q ss_pred CCCcEEEEEEe-CCCeEEEEeCCCcEEEEe--CCceEEEEecCCc--EEEEEEccCCc
Q 004329 228 HTAIVYSIDSH-ASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGC--VWDAKFLENGD 280 (760)
Q Consensus 228 h~~~v~~v~~~-p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~--v~~v~~~~~g~ 280 (760)
+... ..-.+. ..++++.++.||.++.|| +++.+..+..+.. ..-+.|..+|+
T Consensus 474 ~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 474 VTIF-NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp SSSC-CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCc-cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCE
Confidence 4432 222333 344888999999999999 8899988874432 23467778998
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.57 E-value=1.2e-06 Score=92.55 Aligned_cols=219 Identities=14% Similarity=0.081 Sum_probs=141.3
Q ss_pred cCCCCEEEEEEcCCCeEEEEEC------CCeEEEEeCCCCCCccceeeeEee------CCCCCeEEEEEeCCCCCCCCcE
Q 004329 17 GHEDDVRGICVCDNVGIATSSR------DRTVRFWSLDPSDKRKYHSSKILL------GHTSFVGPLAWISPNEEFPEGG 84 (760)
Q Consensus 17 gH~~~V~~v~~~~~~~l~tgs~------Dg~i~iWd~~~~~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~~~~~~ 84 (760)
+|-..+.+++++++++|..+.. ++.|.+||+.+++ ....+. .+...+..+++.+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~-----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~----~ 134 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ-----LSRVIYLPPPITLSNSFVNDLAVDLIHNF----V 134 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE-----EEEEEECCTTTSCTTCCCCEEEEETTTTE----E
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe-----EEEEEECChhhcccccccceEEEecCCCE----E
Confidence 4567899999999998555443 5799999998665 122222 23356789999976542 2
Q ss_pred EEEEe---CCCeEEEEECCCCceEEEEeCCCccE---EEEEecCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEE
Q 004329 85 LVSGG---MDTMVLVWDLGSGEKVQTLQGHKLQV---TGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIR 158 (760)
Q Consensus 85 l~sgs---~dg~I~vwd~~~~~~~~~l~~h~~~V---~~l~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~ 158 (760)
+++.. .++.|.+||+.+++..+.+.+|.... ..+..++..+.+.+.+|.++.|.. .+..+++
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~------------~~~gia~ 202 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL------------GVNGIVL 202 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC------------CEEEEEE
T ss_pred EEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec------------ccceeEe
Confidence 44544 67899999999888877776543211 122334445666777887766532 3568999
Q ss_pred eCCCc-EEEEECCC-cEEEEeCC---C-c------eE--EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEec-CCceE
Q 004329 159 IPSGE-IVSGSSDT-TIKLWKGK---K-C------AQ--TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWAL-TGQVL 222 (760)
Q Consensus 159 ~~~~~-l~tgs~dg-~i~iwd~~---~-~------~~--~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~-~~~~~ 222 (760)
+|+++ ++.+..++ .+..++.. . . .. ...++......+++.+++. +++...++.|.+||. +++..
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 99987 66666555 55555421 0 0 00 1223445667899999777 666667889999998 77643
Q ss_pred EEeec-CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 223 MEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 223 ~~~~~-h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
..... +.....++++.+++ ++++.+..+.+.+|.
T Consensus 283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 32222 24578999999988 666666555554444
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=0.00013 Score=73.49 Aligned_cols=242 Identities=8% Similarity=-0.008 Sum_probs=149.4
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHK 112 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 112 (760)
|+.+. .+.|+.++++............+......+.+++|.+++.. ++++-..++.|..+++..+.....+....
T Consensus 4 l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~----ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 4 LLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV----VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE----EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred EEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE----EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 34444 35788898874432111111112222345789999987653 34555567899999997665444343333
Q ss_pred ccEEEEEec--CCeEEEE-ECCCeEEEEECCc-eeEEee-cCCcCeEEEEEeCC-CcEEEEEC---CCcEEEEeCCC-ce
Q 004329 113 LQVTGVTLD--NEDIVSS-SVDSTLKRWRKGK-LVEFWE-AHNAPIQTVIRIPS-GEIVSGSS---DTTIKLWKGKK-CA 182 (760)
Q Consensus 113 ~~V~~l~~~--~~~l~sg-s~dg~v~vwd~~~-~~~~~~-~~~~~v~~v~~~~~-~~l~tgs~---dg~i~iwd~~~-~~ 182 (760)
.....++++ ++.++.+ ...+.|.+++... ....+. ........+++.|+ +.++.+.. .+.|..++... ..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 567888886 4565554 4567899988752 222222 22245688999995 66655544 36788887543 22
Q ss_pred EEee-cCCCceEEEEEeCC-Ce-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--
Q 004329 183 QTFV-GHTDTVRGLSVMPG-VG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 183 ~~~~-~h~~~V~~l~~~~~-~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-- 256 (760)
..+. ........++++++ +. +++-...+.|.++|..+.....+.........++.. ++ .+++....+.|.++|
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence 2332 23356789999985 55 455556789999998876554443333445677765 34 555555678999999
Q ss_pred CCceEEEEecCC--cEEEEEEccCCc
Q 004329 257 DGVCVQSIEHPG--CVWDAKFLENGD 280 (760)
Q Consensus 257 ~~~~~~~~~~~~--~v~~v~~~~~g~ 280 (760)
.++.+..+.... ..+.+++.|++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 577777776332 478888888764
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.52 E-value=4.3e-08 Score=104.80 Aligned_cols=179 Identities=11% Similarity=-0.033 Sum_probs=87.2
Q ss_pred CCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE
Q 004329 29 DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL 108 (760)
Q Consensus 29 ~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l 108 (760)
.++.+++++.||.|+.||..+++ ....+.. +.+.+..+..++. .+++++.||.|+.||..+|+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-----~~W~~~~--~~~~s~p~~~~g~-----~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-----IKWTLKE--DPVLQVPTHVEEP-----AFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-----EEEEEEC--CCSCCCC-----C-----CEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-----EEEEecC--CCceecceEcCCC-----EEEEeCCCCEEEEEECCCCceeeee
Confidence 45669999999999999999887 3333333 3344444444443 4677789999999999999887766
Q ss_pred eCCCcc-E-EEEEe-cCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC-CcEEEEECCCcEEEEeCCCc-
Q 004329 109 QGHKLQ-V-TGVTL-DNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS-GEIVSGSSDTTIKLWKGKKC- 181 (760)
Q Consensus 109 ~~h~~~-V-~~l~~-~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~-~~l~tgs~dg~i~iwd~~~~- 181 (760)
..+... + .+..+ .++.+++++.|+.++.||.. +.+..+..+.. ...+|+ +.+++++.|+.|+.||..+.
T Consensus 76 ~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 76 PFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp SCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSS
T ss_pred eccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCC
Confidence 543211 1 01112 35678888888999999864 44444433321 223333 33667777788888875432
Q ss_pred -eEEeecCCCceEEEEEeCC----CeEEEEeCCCeEEEEec-CCceEEEe
Q 004329 182 -AQTFVGHTDTVRGLSVMPG----VGIISASHDCTIRLWAL-TGQVLMEM 225 (760)
Q Consensus 182 -~~~~~~h~~~V~~l~~~~~----~~l~s~s~dg~I~iwd~-~~~~~~~~ 225 (760)
...+..+. .....+.++ +.+++++.||.|+.||. +|+.+...
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 22221110 111112211 34555666666666664 34444443
No 244
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.45 E-value=0.0013 Score=68.50 Aligned_cols=267 Identities=10% Similarity=0.024 Sum_probs=161.5
Q ss_pred CCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEe-eCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 18 HEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKIL-LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 18 H~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
-...+.+|.|.+++.+..++.+|.|. ...+.++ .+...... ......+.++.|.+ +. ++.++.++.|..
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~--tW~~~~~~~~~~~~~~~~i~~~~-~~------~~~~g~~g~i~~ 103 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVGVNATLM-ETRDGGQ--TWEPRTLVLDHSDYRFNSVSFQG-NE------GWIVGEPPIMLH 103 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEETTTEEE-EESSTTS--SCEECCCCCSCCCCEEEEEEEET-TE------EEEEEETTEEEE
T ss_pred CCCcEEEEEECCCCcEEEEcCCCeEE-EeCCCCC--CCeECCCCCCCCCccEEEEEecC-Ce------EEEEECCCeEEE
Confidence 35579999998777744466778653 3333232 33332211 12345688999875 32 444556675554
Q ss_pred EECCCCceEEEEe---CCCccEEEEEec-CCeEEEEECCCeEE-EEECCceeEEe-ecCCcCeEEEEEeCCCcEEEEECC
Q 004329 97 WDLGSGEKVQTLQ---GHKLQVTGVTLD-NEDIVSSSVDSTLK-RWRKGKLVEFW-EAHNAPIQTVIRIPSGEIVSGSSD 170 (760)
Q Consensus 97 wd~~~~~~~~~l~---~h~~~V~~l~~~-~~~l~sgs~dg~v~-vwd~~~~~~~~-~~~~~~v~~v~~~~~~~l~tgs~d 170 (760)
..+.|+.-.... .+...+..+.+. ++.++.++.+|.+. -.|-++.-... ..+...+..+.+.+++.++..+.+
T Consensus 104 -S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 104 -TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp -ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT
T ss_pred -ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC
Confidence 333344333332 233556777764 66666666677653 33545333222 344567889999998887777777
Q ss_pred CcEEEE-eC-CCceE-EeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC-CceEEEee-c---CCCcEEEEEEeCCCe
Q 004329 171 TTIKLW-KG-KKCAQ-TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT-GQVLMEMV-G---HTAIVYSIDSHASGL 242 (760)
Q Consensus 171 g~i~iw-d~-~~~~~-~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~-~---h~~~v~~v~~~p~~~ 242 (760)
|.+..- |. ...-. .-......+..+.+.+++.++.++.+|.+++.+.+ ++.-..+. . +...+.++.+.+++.
T Consensus 183 G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp SSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred CcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 766554 43 22222 22345567889999888888888889998887533 33222222 1 224588999988775
Q ss_pred EEEEeCCCcEEEEe-CCceEEEEe----cCCcEEEEEEccCCcEEEEEcCCcEEEEeC
Q 004329 243 IVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 243 l~s~s~Dg~I~iwd-~~~~~~~~~----~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~ 295 (760)
++.++.++.+..-. .+..-..+. .+..+.++.|.+++.+++++.+|.|.-++-
T Consensus 263 ~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 263 VWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 55556677774433 454444443 245788899987777888899998776653
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.37 E-value=2.3e-07 Score=99.11 Aligned_cols=190 Identities=13% Similarity=0.010 Sum_probs=110.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEe-c-CCeEEEEECCCeEEEEEC--CceeEEeecCCc-CeE-EE
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL-D-NEDIVSSSVDSTLKRWRK--GKLVEFWEAHNA-PIQ-TV 156 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~-~-~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~-~v~-~v 156 (760)
+.+++++.||.|+.||..+|+.+..+.. ..+.+..+ . +..+++++.||.++.||. ++.+..+..+.. .+. +.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 4699999999999999999999988876 33333222 3 445777789999999986 455555544321 110 01
Q ss_pred EEeCCCcEEEEECCCcEEEEeCCC--ceEEeecCCCceEEEEEeC-CCeEEEEeCCCeEEEEec-CCceEEEeecCCCcE
Q 004329 157 IRIPSGEIVSGSSDTTIKLWKGKK--CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIV 232 (760)
Q Consensus 157 ~~~~~~~l~tgs~dg~i~iwd~~~--~~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v 232 (760)
.+..++.+++|+.++.++.||..+ ....+..+. ...++| ++.+++++.|+.|+.||. +|+.+..+..+. .
T Consensus 88 ~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~ 161 (369)
T 2hz6_A 88 CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--Y 161 (369)
T ss_dssp CC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--E
T ss_pred eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--c
Confidence 112355678888999999999654 333333332 123344 455889999999999996 566655543211 1
Q ss_pred EEEEEeCC----CeEEEEeCCCcEEEEe--CCceEEEEecCCcEEE-EEEccCCc
Q 004329 233 YSIDSHAS----GLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD-AKFLENGD 280 (760)
Q Consensus 233 ~~v~~~p~----~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~-v~~~~~g~ 280 (760)
....+.++ +.+++++.||.++.|| +++.+.......++.. ..++++|.
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 22233332 4677889999999999 7888777776666543 23344443
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.31 E-value=0.00029 Score=73.15 Aligned_cols=226 Identities=14% Similarity=0.069 Sum_probs=142.3
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeC-------------------CCccEEEEEec--CCe
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG-------------------HKLQVTGVTLD--NED 124 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~-------------------h~~~V~~l~~~--~~~ 124 (760)
....+++|.+++. +++++..++.|..|+..+++....... ....+.+++++ ++.
T Consensus 19 ~~p~~i~~d~~g~-----~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-----GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp SCCCCEECCTTCS-----SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCceEEEEcCCCC-----EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3456788888765 478888899999999876544321110 01357888887 567
Q ss_pred EEEEECCCeEEEEECC-ceeEEeecC-----CcCeEEEEEeC-CCcEEEEEC------------------CCcEEEEeCC
Q 004329 125 IVSSSVDSTLKRWRKG-KLVEFWEAH-----NAPIQTVIRIP-SGEIVSGSS------------------DTTIKLWKGK 179 (760)
Q Consensus 125 l~sgs~dg~v~vwd~~-~~~~~~~~~-----~~~v~~v~~~~-~~~l~tgs~------------------dg~i~iwd~~ 179 (760)
++.+...+.+..+|.. .....+... ......+++.+ +|.+..+.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 8888777778888865 323333211 13467899999 898766543 2668888864
Q ss_pred C-ceEEeecCCCceEEEEEeCCCe-EEEE-eCCCeEEEEecCCc---eEEEeecCCCcEEEEEEeCCC-eEEEEeC----
Q 004329 180 K-CAQTFVGHTDTVRGLSVMPGVG-IISA-SHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSE---- 248 (760)
Q Consensus 180 ~-~~~~~~~h~~~V~~l~~~~~~~-l~s~-s~dg~I~iwd~~~~---~~~~~~~h~~~v~~v~~~p~~-~l~s~s~---- 248 (760)
. ....+.........++++|++. ++.+ +..+.|.+|++.+. ....+..... ...+++.++| +.++...
T Consensus 174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 3 2222322224456799999765 5444 56689999998642 1222222223 7889999999 4444333
Q ss_pred ------CCcEEEEe-CCceEEEEecC-----CcEEEEEEccCCcEE-EEEcCCcEEEEeCCCC
Q 004329 249 ------DRFAKIWK-DGVCVQSIEHP-----GCVWDAKFLENGDIV-TACSDGVTRIWTVHSD 298 (760)
Q Consensus 249 ------Dg~I~iwd-~~~~~~~~~~~-----~~v~~v~~~~~g~lv-t~~~dg~I~vw~~~~~ 298 (760)
.+.|..+| .++.+..+..+ ..++++++ .++.++ +...++.|.++++...
T Consensus 253 ~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 46788888 77777777643 35667766 566754 4445788999987643
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.31 E-value=7.5e-05 Score=86.06 Aligned_cols=264 Identities=11% Similarity=0.072 Sum_probs=159.5
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCC----------Ce-EEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTS----------FV-GPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
++.++.++.++.|.-+|..+++. ......... .+ ..+++. ++.++.++.|+.|..+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~~~dg~l~alD 133 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE-----LWRYDPEVAKVKARTSCCDAVNRGVALW-------GDKVYVGTLDGRLIALD 133 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE-----EEEECCCCCGGGGGGCTTCSCCCCCEEE-------BTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh-----ceEECCCCCccccccccccCCccceEEE-------CCEEEEEcCCCEEEEEE
Confidence 56688888899999999988863 222211110 00 111221 23588999999999999
Q ss_pred CCCCceEEEEeCCC----ccEE-EEEecCCeEEEEEC------CCeEEEEEC--CceeEEeecCC---------------
Q 004329 99 LGSGEKVQTLQGHK----LQVT-GVTLDNEDIVSSSV------DSTLKRWRK--GKLVEFWEAHN--------------- 150 (760)
Q Consensus 99 ~~~~~~~~~l~~h~----~~V~-~l~~~~~~l~sgs~------dg~v~vwd~--~~~~~~~~~~~--------------- 150 (760)
..+|+.+..+.... ..+. +-...++.++.++. +|.|..+|. ++.+..+....
T Consensus 134 ~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp TTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 99999988876421 1111 11223667666654 588999986 45555543210
Q ss_pred ---------------cC-eEEEEEeCCCc-EEEEECCC-------------------cEEEEeCCCceE--Eeec--CC-
Q 004329 151 ---------------AP-IQTVIRIPSGE-IVSGSSDT-------------------TIKLWKGKKCAQ--TFVG--HT- 189 (760)
Q Consensus 151 ---------------~~-v~~v~~~~~~~-l~tgs~dg-------------------~i~iwd~~~~~~--~~~~--h~- 189 (760)
.. ...+++.+++. ++.++.++ .|..+|..+... .+.. |.
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~ 293 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS 293 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred cccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc
Confidence 00 11356777544 66776665 388888554333 3332 22
Q ss_pred ------CceEEEEEeCCCe----EEEEeCCCeEEEEec-CCceEEEeecCC------------CcE--------------
Q 004329 190 ------DTVRGLSVMPGVG----IISASHDCTIRLWAL-TGQVLMEMVGHT------------AIV-------------- 232 (760)
Q Consensus 190 ------~~V~~l~~~~~~~----l~s~s~dg~I~iwd~-~~~~~~~~~~h~------------~~v-------------- 232 (760)
.+.....+..++. ++.++.+|.++++|. +|+.+....... .++
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 2222222222443 888999999999995 577664332111 000
Q ss_pred ----------EEEEEeCCC-eEEEE------------------------------------eCCCcEEEEe--CCceEEE
Q 004329 233 ----------YSIDSHASG-LIVSG------------------------------------SEDRFAKIWK--DGVCVQS 263 (760)
Q Consensus 233 ----------~~v~~~p~~-~l~s~------------------------------------s~Dg~I~iwd--~~~~~~~ 263 (760)
..++++|+. .++.. ..+|.|..|| +++.+..
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~ 453 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK 453 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEE
Confidence 015667765 33321 1347899999 7788777
Q ss_pred EecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhh
Q 004329 264 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 264 ~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
..+..+.+...+...+. +++++.||.++.||.++++.+..+.
T Consensus 454 ~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 454 VPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 77655555444444454 7788889999999999999877554
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.21 E-value=0.00096 Score=66.60 Aligned_cols=198 Identities=15% Similarity=0.127 Sum_probs=131.0
Q ss_pred CceEeEEeccCCC--CEEEEEEcCCCeEEEEE-C--CCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCC
Q 004329 8 EYQLSSELRGHED--DVRGICVCDNVGIATSS-R--DRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFP 81 (760)
Q Consensus 8 ~~~l~~~l~gH~~--~V~~v~~~~~~~l~tgs-~--Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~ 81 (760)
+++.++++. |.. ....+.|++++.|..++ . ++.|++.|+.+++ ....+. +.......+++. +..
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-----v~~~i~l~~~~fgeGi~~~--g~~-- 77 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-----VENIHKMDDSYFGEGLTLL--NEK-- 77 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-----EEEEEECCTTCCEEEEEEE--TTE--
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-----EEEEEecCCCcceEEEEEe--CCE--
Confidence 467888884 543 46899999988855443 3 5899999999876 233322 222233456655 331
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecC--C---cCeE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAH--N---APIQ 154 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~--~---~~v~ 154 (760)
+.++.-.++.+.++|..+.+.+.++......-..++.+++.++++..++.+.++|.. +....+... . ..++
T Consensus 78 --lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 78 --LYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp --EEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred --EEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 345556789999999999999988863323335678888877777788999999875 334443321 1 1356
Q ss_pred EEEEeCCCcEEEEE-CCCcEEEEeCCC--ceEEeecC-------------CCceEEEEEeCCCe--EEEEeCCCeEEEEe
Q 004329 155 TVIRIPSGEIVSGS-SDTTIKLWKGKK--CAQTFVGH-------------TDTVRGLSVMPGVG--IISASHDCTIRLWA 216 (760)
Q Consensus 155 ~v~~~~~~~l~tgs-~dg~i~iwd~~~--~~~~~~~h-------------~~~V~~l~~~~~~~--l~s~s~dg~I~iwd 216 (760)
.+.+. ++++.+.. .++.|.+.|..+ ....+.-. ......|+++|++. ++++...+.+...+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 77777 67765554 578899999543 34444321 13568999998654 67777888888887
Q ss_pred cC
Q 004329 217 LT 218 (760)
Q Consensus 217 ~~ 218 (760)
+.
T Consensus 235 l~ 236 (266)
T 2iwa_A 235 LH 236 (266)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.20 E-value=0.0014 Score=65.81 Aligned_cols=218 Identities=10% Similarity=0.007 Sum_probs=135.0
Q ss_pred EEEEeCCCeEEEEECCCCce-----EEEEeCCCccEEEEEec--CCeEEEE-ECCCeEEEEECCc-eeEEe-ecCCcCeE
Q 004329 85 LVSGGMDTMVLVWDLGSGEK-----VQTLQGHKLQVTGVTLD--NEDIVSS-SVDSTLKRWRKGK-LVEFW-EAHNAPIQ 154 (760)
Q Consensus 85 l~sgs~dg~I~vwd~~~~~~-----~~~l~~h~~~V~~l~~~--~~~l~sg-s~dg~v~vwd~~~-~~~~~-~~~~~~v~ 154 (760)
|+.+.. +.|+.+++..... ...+......+.+++++ ++.++.+ ..++.|..++... ....+ ........
T Consensus 4 l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~ 82 (267)
T 1npe_A 4 LLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (267)
T ss_dssp EEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence 444433 4788888865432 11222223456788886 4555544 4578899998752 22222 22335678
Q ss_pred EEEEeCC-CcEE-EEECCCcEEEEeCCCc-eEEeec-CCCceEEEEEeC-CCeEEEEeC---CCeEEEEecCCceEEEee
Q 004329 155 TVIRIPS-GEIV-SGSSDTTIKLWKGKKC-AQTFVG-HTDTVRGLSVMP-GVGIISASH---DCTIRLWALTGQVLMEMV 226 (760)
Q Consensus 155 ~v~~~~~-~~l~-tgs~dg~i~iwd~~~~-~~~~~~-h~~~V~~l~~~~-~~~l~s~s~---dg~I~iwd~~~~~~~~~~ 226 (760)
.+++.++ +.++ +-...+.|.+++.... ...+.. .......+++.| ++.++.+.. .+.|..+++++.....+.
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~ 162 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE
Confidence 9999986 4554 4455678999986532 223322 225678999999 566555554 468999998876555443
Q ss_pred -cCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe-CCceEEEE-ecCCcEEEEEEccCCcEEEEE-cCCcEEEEeCCCCee
Q 004329 227 -GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSI-EHPGCVWDAKFLENGDIVTAC-SDGVTRIWTVHSDKV 300 (760)
Q Consensus 227 -~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~-~~~~~v~~v~~~~~g~lvt~~-~dg~I~vw~~~~~~~ 300 (760)
........+++++++ ++++-...+.|.++| .+.....+ ........++.. ++.++.+. ..+.|.+++..+++.
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 334568899999975 556666778899999 33332222 322345667654 44554444 578999999998887
Q ss_pred echh
Q 004329 301 ADSL 304 (760)
Q Consensus 301 ~~~~ 304 (760)
...+
T Consensus 242 ~~~i 245 (267)
T 1npe_A 242 MDTF 245 (267)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.17 E-value=0.0005 Score=77.48 Aligned_cols=263 Identities=13% Similarity=0.044 Sum_probs=154.6
Q ss_pred CCeEEEEEC-CCeEEEEeC-CCCCCccceeeeEeeCCCC----------Ce-EEEEEeCCCCCCCCcEEEEEeCCCeEEE
Q 004329 30 NVGIATSSR-DRTVRFWSL-DPSDKRKYHSSKILLGHTS----------FV-GPLAWISPNEEFPEGGLVSGGMDTMVLV 96 (760)
Q Consensus 30 ~~~l~tgs~-Dg~i~iWd~-~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~~~~~l~sgs~dg~I~v 96 (760)
++.++.++. ++.|.-+|. .+++. ......... .+ ..+++. ++.++.++.|+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI-----VWQHKPKQDASTKAVMCCDVVDRGLAYG-------AGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE-----EEEECCCCCGGGGGGCTTCSCCCCCEEE-------TTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE-----EEEEcCCCCccccccccccccccccEEE-------CCEEEEEeCCCEEEE
Confidence 566777777 899999998 77762 111111100 00 111221 235889999999999
Q ss_pred EECCCCceEEEEeCCC----ccEE-EEEecCCeEEEEEC------CCeEEEEECC--ceeEEeecCCcC-----------
Q 004329 97 WDLGSGEKVQTLQGHK----LQVT-GVTLDNEDIVSSSV------DSTLKRWRKG--KLVEFWEAHNAP----------- 152 (760)
Q Consensus 97 wd~~~~~~~~~l~~h~----~~V~-~l~~~~~~l~sgs~------dg~v~vwd~~--~~~~~~~~~~~~----------- 152 (760)
+|..+|+.+....... ..+. +-...++.++.++. ++.|..+|.. +.+..+......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~ 209 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNS 209 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccc
Confidence 9999999988765322 0121 11224677777765 7999999864 555444322110
Q ss_pred --------------------------e-EEEEEeCC-CcEEEEECC----------------CcEEEEeCCCceE--Eee
Q 004329 153 --------------------------I-QTVIRIPS-GEIVSGSSD----------------TTIKLWKGKKCAQ--TFV 186 (760)
Q Consensus 153 --------------------------v-~~v~~~~~-~~l~tgs~d----------------g~i~iwd~~~~~~--~~~ 186 (760)
+ ..+++.++ +.++.++.+ +.|..+|..+... .++
T Consensus 210 ~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 210 ANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp TCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence 1 12455554 445555432 2588888554332 332
Q ss_pred c--CC--------CceEEEEEeCCC---e-EEEEeCCCeEEEEec-CCceEEEeecCC-------------CcE------
Q 004329 187 G--HT--------DTVRGLSVMPGV---G-IISASHDCTIRLWAL-TGQVLMEMVGHT-------------AIV------ 232 (760)
Q Consensus 187 ~--h~--------~~V~~l~~~~~~---~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~-------------~~v------ 232 (760)
. |. .++. +....++ . ++.++.+|.++++|. +|+.+....... .++
T Consensus 290 ~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 368 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA 368 (571)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccC
Confidence 2 21 1221 2222245 3 677889999999995 677766554211 111
Q ss_pred --------------------EEEEEeCCC-eEEEEe-------------------------------------CCCcEEE
Q 004329 233 --------------------YSIDSHASG-LIVSGS-------------------------------------EDRFAKI 254 (760)
Q Consensus 233 --------------------~~v~~~p~~-~l~s~s-------------------------------------~Dg~I~i 254 (760)
..++++|+. +++... .+|.|..
T Consensus 369 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a 448 (571)
T 2ad6_A 369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA 448 (571)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred CCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEE
Confidence 135677765 444432 3578888
Q ss_pred Ee--CCceEEEEecCCcEEEEEEcc-CCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 255 WK--DGVCVQSIEHPGCVWDAKFLE-NGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 255 wd--~~~~~~~~~~~~~v~~v~~~~-~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
|| +++.+..+.+...+.+..+.. ++.++.++.||.|+.||.++++.+..+.
T Consensus 449 ~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 449 FDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp ECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 98 677777777555444433333 4557778889999999999998876543
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.10 E-value=0.00097 Score=75.23 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=151.2
Q ss_pred CCeEEEEEC-CCeEEEEeC-CCCCCccceeeeEeeCCC-------CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECC
Q 004329 30 NVGIATSSR-DRTVRFWSL-DPSDKRKYHSSKILLGHT-------SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLG 100 (760)
Q Consensus 30 ~~~l~tgs~-Dg~i~iWd~-~~~~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~ 100 (760)
++.++.++. ++.|.-+|. .+++. .+.......... .....+++.|.+.. ....++.++.|+.+..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~-lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~-~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI-LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGK-TPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE-EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSS-SCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE-EEEECCCCCccccccccccccccceEEEecCCc-ceeEEEEEcCCCEEEEEECC
Confidence 566777777 899999999 77762 121110000000 00122344332220 01138889999999999999
Q ss_pred CCceEEEEeCCCc----cEE-EEEecCCeEEEEE------CCCeEEEEECC--ceeEEeecCCcC---------------
Q 004329 101 SGEKVQTLQGHKL----QVT-GVTLDNEDIVSSS------VDSTLKRWRKG--KLVEFWEAHNAP--------------- 152 (760)
Q Consensus 101 ~~~~~~~l~~h~~----~V~-~l~~~~~~l~sgs------~dg~v~vwd~~--~~~~~~~~~~~~--------------- 152 (760)
+|+.+........ .+. .-...++.++.++ .+|.|+.+|.. +.+..+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9999887653220 111 1122366777766 38999999864 555444322110
Q ss_pred ----------------------eE-EEEEeCC-CcEEEEECC----------------CcEEEEeCCCceE--Eeec--C
Q 004329 153 ----------------------IQ-TVIRIPS-GEIVSGSSD----------------TTIKLWKGKKCAQ--TFVG--H 188 (760)
Q Consensus 153 ----------------------v~-~v~~~~~-~~l~tgs~d----------------g~i~iwd~~~~~~--~~~~--h 188 (760)
++ ..++.++ +.++.++.+ +.|..+|..+... .++. |
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 11 2344454 445566554 3688888554333 3332 2
Q ss_pred C--------CceEEEEEe-CCC---e-EEEEeCCCeEEEEec-CCceEEEeecCC-------------CcE---------
Q 004329 189 T--------DTVRGLSVM-PGV---G-IISASHDCTIRLWAL-TGQVLMEMVGHT-------------AIV--------- 232 (760)
Q Consensus 189 ~--------~~V~~l~~~-~~~---~-l~s~s~dg~I~iwd~-~~~~~~~~~~h~-------------~~v--------- 232 (760)
. .++. +... .++ . ++.++.+|.+.++|. +|+.+....... .++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 1 1121 2222 344 3 667889999999995 677766543211 111
Q ss_pred -----------------EEEEEeCCC-eEEEE---------------------------------e------CCCcEEEE
Q 004329 233 -----------------YSIDSHASG-LIVSG---------------------------------S------EDRFAKIW 255 (760)
Q Consensus 233 -----------------~~v~~~p~~-~l~s~---------------------------------s------~Dg~I~iw 255 (760)
..++++|+. ++++. + .+|.+..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 134555554 33222 1 34678888
Q ss_pred e--CCceEEEEecCCcEEEEEEc-cCCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 256 K--DGVCVQSIEHPGCVWDAKFL-ENGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 256 d--~~~~~~~~~~~~~v~~v~~~-~~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
| +++.+....+..+.+.-... ..|.++.++.||.++.||.++|+.+....
T Consensus 459 D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 459 NAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp CTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 8 66766666544433322222 34446778889999999999998776543
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.09 E-value=0.0013 Score=68.08 Aligned_cols=229 Identities=12% Similarity=-0.026 Sum_probs=140.7
Q ss_pred ccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEee-----------------CCCCCeEEEEEeC-C
Q 004329 16 RGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILL-----------------GHTSFVGPLAWIS-P 76 (760)
Q Consensus 16 ~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-----------------~h~~~V~~l~~~~-~ 76 (760)
.+.-....++++.+++. +.++..++.|..|+..++.. ....... .....+..+++.+ +
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---EEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 33334556788999988 99999999999998874431 1111000 0113578899987 5
Q ss_pred CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeC-----CCccEEEEEecC--CeEEEEEC------------------C
Q 004329 77 NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQG-----HKLQVTGVTLDN--EDIVSSSV------------------D 131 (760)
Q Consensus 77 ~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~-----h~~~V~~l~~~~--~~l~sgs~------------------d 131 (760)
+. |+.+...+.|..+|..+++. ..+.. .......++++. +.++.+.. +
T Consensus 92 g~------l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 92 NQ------LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TE------EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred Cc------EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 54 67776666688899875543 22211 113456777763 45655543 2
Q ss_pred CeEEEEECC-ceeEEeecCCcCeEEEEEeCCCc-EEEE-ECCCcEEEEeCCC----ceEEeecCCCceEEEEEeCCCeEE
Q 004329 132 STLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE-IVSG-SSDTTIKLWKGKK----CAQTFVGHTDTVRGLSVMPGVGII 204 (760)
Q Consensus 132 g~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~-l~tg-s~dg~i~iwd~~~----~~~~~~~h~~~V~~l~~~~~~~l~ 204 (760)
+.|..||.. .....+.........+++++++. ++.+ +..+.|..|+... ....+....+ ...+++.+++.+.
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEE
T ss_pred ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEE
Confidence 668888864 22222222223345789999987 5444 5568899998542 2223322233 7889999987755
Q ss_pred EEeC-----------CCeEEEEecCCceEEEeecCC----CcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 205 SASH-----------DCTIRLWALTGQVLMEMVGHT----AIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 205 s~s~-----------dg~I~iwd~~~~~~~~~~~h~----~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+.. .+.|..+|..++.+..+.... ..+.++++. ++ ++++....+.|..++
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEE
T ss_pred EEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEe
Confidence 5543 367889998888877776432 346666663 55 555555677788887
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.05 E-value=0.00053 Score=78.93 Aligned_cols=267 Identities=12% Similarity=0.097 Sum_probs=152.6
Q ss_pred ccccCCCceEeEEeccCCCC----------E-EEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC----CC
Q 004329 2 MDIDFKEYQLSSELRGHEDD----------V-RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH----TS 66 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~----------V-~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h----~~ 66 (760)
+.+|..+.+.+.++..+... + ..+++ .+++++.++.|+.|..+|..+++. ....... ..
T Consensus 79 ~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~-----~W~~~~~~~~~~~ 152 (668)
T 1kv9_A 79 IAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKA-----IWSQQTTDPAKPY 152 (668)
T ss_dssp EEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCE-----EEEEECSCTTSSC
T ss_pred EEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCE-----eeeeccCCCCCcc
Confidence 45677888888887643221 1 12233 245688899999999999998872 2222211 01
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeC------CCeEEEEECCCCceEEEEeCC---Cc------------------------
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGM------DTMVLVWDLGSGEKVQTLQGH---KL------------------------ 113 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~h---~~------------------------ 113 (760)
.+.+--...+ +.++.+.. +|.|+.+|..+|+.+..+... ..
T Consensus 153 ~~~~~P~v~~------~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~ 226 (668)
T 1kv9_A 153 SITGAPRVVK------GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG 226 (668)
T ss_dssp BCCSCCEEET------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHC
T ss_pred eecCCCEEEC------CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeC
Confidence 1111000012 24666543 589999999999998887521 00
Q ss_pred ----cEEEEEec--CCeEEEEECCCe-------------------EEEEEC--CceeEEeec--CC-------cCeEEEE
Q 004329 114 ----QVTGVTLD--NEDIVSSSVDST-------------------LKRWRK--GKLVEFWEA--HN-------APIQTVI 157 (760)
Q Consensus 114 ----~V~~l~~~--~~~l~sgs~dg~-------------------v~vwd~--~~~~~~~~~--~~-------~~v~~v~ 157 (760)
....++++ .+.++.++.++. |..+|. ++.+..++. |. .+.....
T Consensus 227 ~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d 306 (668)
T 1kv9_A 227 GGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAE 306 (668)
T ss_dssp EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEE
T ss_pred CCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEE
Confidence 01124554 567888877763 888875 455555543 21 2222223
Q ss_pred EeCCCc----EEEEECCCcEEEEeCCC--ceEEeecCC------------Cce------------------------EEE
Q 004329 158 RIPSGE----IVSGSSDTTIKLWKGKK--CAQTFVGHT------------DTV------------------------RGL 195 (760)
Q Consensus 158 ~~~~~~----l~tgs~dg~i~iwd~~~--~~~~~~~h~------------~~V------------------------~~l 195 (760)
+..+|+ ++.++.+|.++++|..+ .+....... .++ ..+
T Consensus 307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 333554 77889999999998543 321111000 000 125
Q ss_pred EEeCCCe-EEEE------------------------------------eCCCeEEEEec-CCceEEEeecCCCcEEEEEE
Q 004329 196 SVMPGVG-IISA------------------------------------SHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDS 237 (760)
Q Consensus 196 ~~~~~~~-l~s~------------------------------------s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~ 237 (760)
+++|+.. ++.. ..+|.|..||. +++.+.+...+.........
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~ 466 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS 466 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeE
Confidence 6666433 2221 13488999996 56766665543322211222
Q ss_pred eCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcE--EEEEEccCCc
Q 004329 238 HASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCV--WDAKFLENGD 280 (760)
Q Consensus 238 ~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v--~~v~~~~~g~ 280 (760)
..+++++.++.|+.++.|| +++.+..+..+..+ .-+.+..+|+
T Consensus 467 t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred eCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 2344888899999999999 78888888754422 2344456777
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.99 E-value=0.0093 Score=61.14 Aligned_cols=219 Identities=10% Similarity=0.014 Sum_probs=118.4
Q ss_pred CCceEeEEeccCCCCEEEEEEcCCCeEE-EEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 7 KEYQLSSELRGHEDDVRGICVCDNVGIA-TSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 7 ~~~~l~~~l~gH~~~V~~v~~~~~~~l~-tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
...++..++..+ ....+++|++++.|+ +...++.|..||... . ..... ........+++.+++. ++
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~-----~~~~~-~~~~~p~gia~~~dG~-----l~ 86 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-----QQIHA-TVEGKVSGLAFTSNGD-----LV 86 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-----EEEEE-ECSSEEEEEEECTTSC-----EE
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-c-----eEEEE-eCCCCceeEEEcCCCc-----EE
Confidence 456777777644 567899999998844 444789999998763 2 11112 1235688999999887 33
Q ss_pred EEEe-CCC-eEEEEECCCCceEEEEeC-CCccEEEEEe-cCCeEEEEE-CCCeEEEEECCce---eEEee---------c
Q 004329 86 VSGG-MDT-MVLVWDLGSGEKVQTLQG-HKLQVTGVTL-DNEDIVSSS-VDSTLKRWRKGKL---VEFWE---------A 148 (760)
Q Consensus 86 ~sgs-~dg-~I~vwd~~~~~~~~~l~~-h~~~V~~l~~-~~~~l~sgs-~dg~v~vwd~~~~---~~~~~---------~ 148 (760)
++.. .++ .|..++..+++....... .......++. .++.++... .++.|.++|.... +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 3333 223 577778777765433321 1222233443 355544444 5788888886531 11111 0
Q ss_pred CCcCeEEEEEeCCCc-E-EEEECCCcEEEEeCCC-c----eEEeecCCCceEEEEEeCCCeEEEE-eCCCeEEEEecCCc
Q 004329 149 HNAPIQTVIRIPSGE-I-VSGSSDTTIKLWKGKK-C----AQTFVGHTDTVRGLSVMPGVGIISA-SHDCTIRLWALTGQ 220 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l-~tgs~dg~i~iwd~~~-~----~~~~~~h~~~V~~l~~~~~~~l~s~-s~dg~I~iwd~~~~ 220 (760)
.-.....+ ++++. + ++-+..+.|..|+... . ...+.. ......+++.+++.++++ ...+.|.++|..++
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC
Confidence 11123344 55554 3 3444566777777432 1 111111 123455667766664433 33566777776655
Q ss_pred eEE--EeecCCCcEEEEEEe---CCC
Q 004329 221 VLM--EMVGHTAIVYSIDSH---ASG 241 (760)
Q Consensus 221 ~~~--~~~~h~~~v~~v~~~---p~~ 241 (760)
... .+.......++++|. |++
T Consensus 244 ~~~~~~~~~~~~~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 244 TTIIAQAEQGVIGSTAVAFGQTEGDC 269 (306)
T ss_dssp EEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred EEEEeecccccCCceEEEEecccCCC
Confidence 422 222223456677776 554
No 255
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.98 E-value=0.0024 Score=68.02 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=124.6
Q ss_pred EEEEEeCCCeEEEEECCCC----ceEEEEe-------CCCccEEEEEec-CCeEEEEECC------CeEEEEECC--cee
Q 004329 84 GLVSGGMDTMVLVWDLGSG----EKVQTLQ-------GHKLQVTGVTLD-NEDIVSSSVD------STLKRWRKG--KLV 143 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~----~~~~~l~-------~h~~~V~~l~~~-~~~l~sgs~d------g~v~vwd~~--~~~ 143 (760)
+++.|..++.|+++|+.+. +.++++. .....-..+... ++.++++..+ |.+.++|.. +.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 5677788899999999755 5566663 011123334444 4466665555 789999865 666
Q ss_pred EEeecCCcC---eEEEEEeCCCcEEEEE--------------------CCCcEEEEeCCC--ceEEeecC--CCceEEEE
Q 004329 144 EFWEAHNAP---IQTVIRIPSGEIVSGS--------------------SDTTIKLWKGKK--CAQTFVGH--TDTVRGLS 196 (760)
Q Consensus 144 ~~~~~~~~~---v~~v~~~~~~~l~tgs--------------------~dg~i~iwd~~~--~~~~~~~h--~~~V~~l~ 196 (760)
..+.....+ -..+-|+|+++++..+ .+.+|.+||..+ ...++... ....+.+.
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~ 257 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELR 257 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeE
Confidence 666533222 2347789998854444 278999999654 33344331 13455666
Q ss_pred E--eCCCe--EEEEe-----CCCeEEEEecCCceE---EE--eecC----------------CCcEEEEEEeCCC--eEE
Q 004329 197 V--MPGVG--IISAS-----HDCTIRLWALTGQVL---ME--MVGH----------------TAIVYSIDSHASG--LIV 244 (760)
Q Consensus 197 ~--~~~~~--l~s~s-----~dg~I~iwd~~~~~~---~~--~~~h----------------~~~v~~v~~~p~~--~l~ 244 (760)
| +|++. ++++- .+++|.+|..+.... +. +... ......|.++++| +.+
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 6 88776 55555 677888776432211 11 1110 2456789999999 445
Q ss_pred EEeCCCcEEEEe-----CCceEEEEecCC---------------cEEEEEEccCCc-EEEEE
Q 004329 245 SGSEDRFAKIWK-----DGVCVQSIEHPG---------------CVWDAKFLENGD-IVTAC 285 (760)
Q Consensus 245 s~s~Dg~I~iwd-----~~~~~~~~~~~~---------------~v~~v~~~~~g~-lvt~~ 285 (760)
+.-..+.|.+|| ..+.+..+...+ ....++++|||+ ++++.
T Consensus 338 Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 338 SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 555678999999 234555554331 368899999999 55555
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.96 E-value=0.0039 Score=61.50 Aligned_cols=185 Identities=11% Similarity=0.132 Sum_probs=118.0
Q ss_pred CceEeEEeccCCCC--EEEEEEcCCCe-EEEEECCC--eEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCCCCC
Q 004329 8 EYQLSSELRGHEDD--VRGICVCDNVG-IATSSRDR--TVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNEEFP 81 (760)
Q Consensus 8 ~~~l~~~l~gH~~~--V~~v~~~~~~~-l~tgs~Dg--~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~ 81 (760)
+|++++++ .|... ...+.|+ ++. +.+.+.+| .|+++|+.+++ ....+.-. ...-..++.. ++.
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-----v~~~~~l~~~~FgeGit~~--g~~-- 98 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-----TLQQIELGKRYFGEGISDW--KDK-- 98 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-----EEEEEECCTTCCEEEEEEE--TTE--
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-----EEEEEecCCccceeEEEEe--CCE--
Confidence 46778888 45443 5889998 567 66777766 99999999887 22333222 2222335543 332
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecC--C---cCeE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAH--N---APIQ 154 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~--~---~~v~ 154 (760)
+.+..-.++.+.+||..+.+.+.++.... .-..++++++.++.+..++.|.++|.. +....+... . ..+.
T Consensus 99 --ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 99 --IVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp --EEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred --EEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 34455568999999999999999987433 335677888777777778889999975 444444321 1 2344
Q ss_pred EEEEeCCCcEEEEE-CCCcEEEEeCCC--ceEEeec------------CCCceEEEEEeCCCe-EEEEe
Q 004329 155 TVIRIPSGEIVSGS-SDTTIKLWKGKK--CAQTFVG------------HTDTVRGLSVMPGVG-IISAS 207 (760)
Q Consensus 155 ~v~~~~~~~l~tgs-~dg~i~iwd~~~--~~~~~~~------------h~~~V~~l~~~~~~~-l~s~s 207 (760)
.+.+. +|++.+.. .++.|.+.|..+ ....+.. ..+..+.|+++|+.. |+..+
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 56666 67766555 577888888543 3333322 123568899998544 44444
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.94 E-value=0.00072 Score=76.20 Aligned_cols=274 Identities=12% Similarity=0.056 Sum_probs=152.2
Q ss_pred ccccC-CCceEeEEeccCCC-C----------EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCC--CC
Q 004329 2 MDIDF-KEYQLSSELRGHED-D----------VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT--SF 67 (760)
Q Consensus 2 ~~~d~-~~~~l~~~l~gH~~-~----------V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~--~~ 67 (760)
+.+|. .+.+.+.++..... . -..+++ .+++++.++.|+.+..+|..+++.. +.. ....+. ..
T Consensus 76 ~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~-W~~--~~~~~~~~~~ 151 (571)
T 2ad6_A 76 YALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKIN-WEV--EVCDPKVGST 151 (571)
T ss_dssp EEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEE-EEE--ECCCGGGTCB
T ss_pred EEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEE-EEe--cCCCCCccce
Confidence 44676 67777777653221 0 012233 3566888899999999999888731 111 111111 01
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeC------CCeEEEEECCCCceEEEEeCCCcc---------------------------
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGM------DTMVLVWDLGSGEKVQTLQGHKLQ--------------------------- 114 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~h~~~--------------------------- 114 (760)
+.+--...+ +.++.++. ++.|+.+|..+|+.+.++......
T Consensus 152 ~~~~P~v~~------g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~ 225 (571)
T 2ad6_A 152 LTQAPFVAK------DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWE 225 (571)
T ss_dssp CCSCCEEET------TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSS
T ss_pred eccCCEEEC------CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCc
Confidence 111000012 24666665 799999999999998877632211
Q ss_pred ----------E-EEEEec--CCeEEEEECC----------------CeEEEEEC--CceeEEeecC----------CcCe
Q 004329 115 ----------V-TGVTLD--NEDIVSSSVD----------------STLKRWRK--GKLVEFWEAH----------NAPI 153 (760)
Q Consensus 115 ----------V-~~l~~~--~~~l~sgs~d----------------g~v~vwd~--~~~~~~~~~~----------~~~v 153 (760)
+ ..++++ .+.++.++.+ +.|..+|. ++.+..++.. ..++
T Consensus 226 ~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~ 305 (571)
T 2ad6_A 226 GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV 305 (571)
T ss_dssp TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE
T ss_pred ccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE
Confidence 0 123443 4566666642 35888876 4555555422 1222
Q ss_pred EEEEEeCCCc----EEEEECCCcEEEEeCCCc--eEEeecCC-------------Cce----------------------
Q 004329 154 QTVIRIPSGE----IVSGSSDTTIKLWKGKKC--AQTFVGHT-------------DTV---------------------- 192 (760)
Q Consensus 154 ~~v~~~~~~~----l~tgs~dg~i~iwd~~~~--~~~~~~h~-------------~~V---------------------- 192 (760)
. +....+|+ ++.++.+|.++++|..+. +....... .++
T Consensus 306 l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~G 384 (571)
T 2ad6_A 306 L-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMG 384 (571)
T ss_dssp E-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTC
T ss_pred E-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCcc
Confidence 1 22223563 567888999999995432 22221110 111
Q ss_pred ----EEEEEeCCCe-EEEEe-------------------------------------CCCeEEEEec-CCceEEEeecCC
Q 004329 193 ----RGLSVMPGVG-IISAS-------------------------------------HDCTIRLWAL-TGQVLMEMVGHT 229 (760)
Q Consensus 193 ----~~l~~~~~~~-l~s~s-------------------------------------~dg~I~iwd~-~~~~~~~~~~h~ 229 (760)
..++++|+.. ++..+ .+|.|..||. +++.+.++....
T Consensus 385 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~ 464 (571)
T 2ad6_A 385 FHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF 464 (571)
T ss_dssp SSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS
T ss_pred ccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC
Confidence 2356666433 44432 3578999996 567766654322
Q ss_pred CcEEEEE-EeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcE--EEEEEccCCcEEEEEcC
Q 004329 230 AIVYSID-SHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCV--WDAKFLENGDIVTACSD 287 (760)
Q Consensus 230 ~~v~~v~-~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v--~~v~~~~~g~lvt~~~d 287 (760)
.+.+.. ...++.++.++.|+.++.|| +++.+..+.....+ .-+.+..+|+++.+..+
T Consensus 465 -~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 465 -AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp -CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred -CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence 222222 22345777799999999999 88888888754433 22345578885444443
No 258
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.94 E-value=0.021 Score=66.81 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=161.0
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeC----CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeE
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLG----HTSFVGPLAWISPNEEFPEGGLVSGGMDTMV 94 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~----h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I 94 (760)
...|.++....++.|..|+.+ -+..++..++. +.... ... ....|.++...+++. .|..|+. +-+
T Consensus 145 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~---~~~~~-~~~~~~~~~~~i~~i~~d~~~~-----~lWigt~-~Gl 213 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK---FEGIP-LPVHSSQSNLFVNSLLEDTTRQ-----CVWIGTE-GYL 213 (758)
T ss_dssp CSCEEEEEECTTCCEEEEETT-EEEEEETTTTE---EEEEC-CCCCTTCSSCCEEEEEEETTTT-----EEEEEEE-EEE
T ss_pred CCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc---eEEec-CCCccccccceeEEEEEECCCC-----EEEEEEC-CCC
Confidence 356888888888887777765 46778876432 11110 111 123488887766544 3556664 458
Q ss_pred EEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCc-eeEEeec--------CCcCeEEEEEeCCCcE
Q 004329 95 LVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK-LVEFWEA--------HNAPIQTVIRIPSGEI 164 (760)
Q Consensus 95 ~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~-~~~~~~~--------~~~~v~~v~~~~~~~l 164 (760)
..+|..+++...........|.++..+ ++.+..|+.+ -+.+++... ....+.. ....|.++....+|.+
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 889987765432211223458888877 6778888854 577787642 2222221 2345889988888889
Q ss_pred EEEECCCcEEEEeCCCceEEee-------cCCCceEEEEEeCCCeEEEEeCCCeEEEEecCC-c--eEEEeec-------
Q 004329 165 VSGSSDTTIKLWKGKKCAQTFV-------GHTDTVRGLSVMPGVGIISASHDCTIRLWALTG-Q--VLMEMVG------- 227 (760)
Q Consensus 165 ~tgs~dg~i~iwd~~~~~~~~~-------~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~-~--~~~~~~~------- 227 (760)
..|+..| +.++........+. .....|.++....++.+..|+.+| +..++... . ....+..
T Consensus 293 WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l 370 (758)
T 3ott_A 293 WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPL 370 (758)
T ss_dssp EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCC
T ss_pred EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCC
Confidence 9998877 55554332222221 123468888888888888888665 55565432 1 1222211
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCcEEEEe-CCceEEEEe--------cCCcEEEEEEccCCcEEEEEcCCcEEEEeCC
Q 004329 228 HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE--------HPGCVWDAKFLENGDIVTACSDGVTRIWTVH 296 (760)
Q Consensus 228 h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~~~~~~~~~--------~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~ 296 (760)
....|.++.-..+|.|..|+. +-+..|| .......+. ....|.++...++|.+-.|+..+-+..++..
T Consensus 371 ~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKH 447 (758)
T ss_dssp SCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHH
T ss_pred CCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccc
Confidence 124689998888886666664 4688898 333333332 1236888888888888888877778888754
No 259
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.93 E-value=0.011 Score=61.43 Aligned_cols=227 Identities=9% Similarity=0.027 Sum_probs=138.4
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe----CCCccEEEEEecCCeEEEEECCCeEEEE-EC
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ----GHKLQVTGVTLDNEDIVSSSVDSTLKRW-RK 139 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~----~h~~~V~~l~~~~~~l~sgs~dg~v~vw-d~ 139 (760)
...+.+|.|.+++. .++ ++.+|.|. ...+.++.-.... .....+.++.++++.++.++.+|.|..- |-
T Consensus 35 ~~~~~~v~~~~~~~-----~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDRHH-----GWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDG 107 (327)
T ss_dssp SSCEEEEEESSSSC-----EEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESST
T ss_pred CCcEEEEEECCCCc-----EEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCC
Confidence 45788999876665 344 56677663 3344444322222 1245688888887676666777766554 32
Q ss_pred CceeEEee---cCCcCeEEEEEeCCCcEEEEECCCcEEE-EeCCCce-EEeecCCCceEEEEEeCCCeEEEEeCCCeEEE
Q 004329 140 GKLVEFWE---AHNAPIQTVIRIPSGEIVSGSSDTTIKL-WKGKKCA-QTFVGHTDTVRGLSVMPGVGIISASHDCTIRL 214 (760)
Q Consensus 140 ~~~~~~~~---~~~~~v~~v~~~~~~~l~tgs~dg~i~i-wd~~~~~-~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~i 214 (760)
++.-.... .+...+..+.+.+++.++.++.++.|.. .|.++.- .....+...+..+.+.+++.++..+.+|.+..
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 33222222 1234577788777777666666776533 3433322 23334566789999998877666666666555
Q ss_pred E-ecCCceEEEe-ecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe-C-CceEEEEecC-----CcEEEEEEccCCcEEEEE
Q 004329 215 W-ALTGQVLMEM-VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-D-GVCVQSIEHP-----GCVWDAKFLENGDIVTAC 285 (760)
Q Consensus 215 w-d~~~~~~~~~-~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-~-~~~~~~~~~~-----~~v~~v~~~~~g~lvt~~ 285 (760)
- |-.+..-..+ ......+..+.+.+++.++.++.+|.+++++ . +..-..+..+ ..+.++++.+++.+++++
T Consensus 188 S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 188 TWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp EECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred EeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe
Confidence 4 3323322222 2455678899999988666777889888874 3 3333333322 358899999888887777
Q ss_pred cCCcEEEEeCCCCe
Q 004329 286 SDGVTRIWTVHSDK 299 (760)
Q Consensus 286 ~dg~I~vw~~~~~~ 299 (760)
.+|.| .+..+.++
T Consensus 268 ~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 268 GAGAL-LCSQDGGQ 280 (327)
T ss_dssp STTCE-EEESSTTS
T ss_pred CCCeE-EEeCCCCc
Confidence 88877 45555554
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.90 E-value=0.0034 Score=70.81 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=58.1
Q ss_pred ccccCCCceEeEEeccCCCC---------EEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCC----CCe
Q 004329 2 MDIDFKEYQLSSELRGHEDD---------VRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT----SFV 68 (760)
Q Consensus 2 ~~~d~~~~~l~~~l~gH~~~---------V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~----~~V 68 (760)
+.+|..+.+.+.++..+... -+.+++ .+++++.++.|+.|.-+|..+++. ........ ..+
T Consensus 81 ~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~-----~W~~~~~~~~~~~~~ 154 (582)
T 1flg_A 81 FALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKV-----VWKKKFADHGAGYTM 154 (582)
T ss_dssp EEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCE-----EEEEECSCGGGTCBC
T ss_pred EEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCE-----EeeecCCCCCcCccc
Confidence 45678888888877654321 022233 356688899999999999998873 22211111 011
Q ss_pred E-EEEEeCCCCCCCCcEEEEEe------CCCeEEEEECCCCceEEEEe
Q 004329 69 G-PLAWISPNEEFPEGGLVSGG------MDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 69 ~-~l~~~~~~~~~~~~~l~sgs------~dg~I~vwd~~~~~~~~~l~ 109 (760)
. +-....+.. .....+++++ .+|.|+.+|..+|+.+....
T Consensus 155 ~~sP~v~~~~~-~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 155 TGAPTIVKDGK-TGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CSCCEEEECTT-TCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred ccCCEEeCCCc-CCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 1 001111100 0000466655 37999999999999888764
No 261
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.86 E-value=0.00073 Score=74.57 Aligned_cols=307 Identities=12% Similarity=0.043 Sum_probs=177.7
Q ss_pred CCCe--EEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEe--CCCCCCCCcEEEEEe--------------
Q 004329 29 DNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWI--SPNEEFPEGGLVSGG-------------- 89 (760)
Q Consensus 29 ~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~~~~~~~~l~sgs-------------- 89 (760)
+||+ +++...+++|.+.|+.+.+ +...+. ........+++. |++. ++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~-----~~~ii~ip~g~~phg~~~~~~p~~~-----~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK-----CDAILEIPNAKGIHGLRPQKWPRSN-----YVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE-----EEEEEECSSCCSEEEEEECCSSBCS-----EEEEEECSCEESSCSSSSTT
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce-----EeeEEeCCCCCCCcceeeeecCCCc-----EEEEecccccccCCCCcccc
Confidence 4677 5555567789999998654 333222 123457788873 6766 566664
Q ss_pred ----CCCeEEEEECCCCceEEEEeC-CCccEEEEEecCCeEEEEECCCe---------------EEEEECCceeEEeecC
Q 004329 90 ----MDTMVLVWDLGSGEKVQTLQG-HKLQVTGVTLDNEDIVSSSVDST---------------LKRWRKGKLVEFWEAH 149 (760)
Q Consensus 90 ----~dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~~~~~l~sgs~dg~---------------v~vwd~~~~~~~~~~~ 149 (760)
.++.+.++|..+.+....+.- ..-.-..+..+++++++.+.+.. +.+.|.....
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------ 242 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------ 242 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------
T ss_pred cccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee------
Confidence 346799999999988888762 22222333445777777775531 3333221100
Q ss_pred CcCeEEEEEeCCCcEEEEECCCcEEEEeCCC----c-eEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCc--
Q 004329 150 NAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK----C-AQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQ-- 220 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~----~-~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~-- 220 (760)
.+.++|+.... +.|.+.|..+ . ...+.. .....++.++||++ ++++-.+.+|.++|+...
T Consensus 243 -------~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 243 -------KAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp -------HHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred -------EeccCCCeeEE---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 01223331111 5599999765 2 223322 23567899999887 455556889999997633
Q ss_pred ----------eEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--C----------CceEEEEecC-CcE-----E
Q 004329 221 ----------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D----------GVCVQSIEHP-GCV-----W 271 (760)
Q Consensus 221 ----------~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~----------~~~~~~~~~~-~~v-----~ 271 (760)
.+..-..-......++|+|+| ..++.-.|+.|.+|| . ...+..+... .+- .
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~ 391 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVM 391 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETT
T ss_pred ccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceecc
Confidence 122222334578899999999 666778899999999 3 4566666632 221 2
Q ss_pred EEEEccCCc-EEEEEc-C-CcE-----------EEEeCCCCeeechhhhhhhhhcccceEE-ecccc-CceeeecCCCCc
Q 004329 272 DAKFLENGD-IVTACS-D-GVT-----------RIWTVHSDKVADSLELEAYASELSQYKL-CRKKV-GGLKLEDLPGLE 335 (760)
Q Consensus 272 ~v~~~~~g~-lvt~~~-d-g~I-----------~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-g~i~~~~l~~~~ 335 (760)
++.++|||+ ++++.. . ..+ .++|+..+++.-...... ........+ ..... ....+|++....
T Consensus 392 g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~-~~ePh~~~i~~~~~~~~~~~~~~~~~~~ 470 (595)
T 1fwx_A 392 GETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT-FAEPHDAIAVHPSILSDIKSVWDRNDPM 470 (595)
T ss_dssp TTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE-SSCCCCEEEECTTTTTTCCSSCCTTCGG
T ss_pred ceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC-CCCCCceEEccHHHccCCceeccCCCCC
Confidence 234579999 444443 1 233 889997766543333333 223333333 34444 667888876531
Q ss_pred e---eeccCC----Ccc-eEEEEeeCCceEEEEEec
Q 004329 336 A---LQIPGT----NAG-QTKVVREGDNGVAYSWDM 363 (760)
Q Consensus 336 ~---l~~~g~----~~g-~~~~v~~~~~~~~~~w~~ 363 (760)
. .....+ -+. +..+++.++...+++|..
T Consensus 471 ~~~ar~~a~~~gv~L~~~~~~v~r~g~~v~V~m~~~ 506 (595)
T 1fwx_A 471 WAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSV 506 (595)
T ss_dssp GHHHHHHHHHTTCCTTSCCCCEEEETTEEEEEEEEE
T ss_pred CcchhhccccccccccccccceeecCCccceeEEEe
Confidence 1 111110 012 344667777677888873
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.85 E-value=0.0044 Score=69.82 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=148.0
Q ss_pred CCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCC---------eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 29 DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSF---------VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 29 ~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
.++.++.++.++.|.-+|..+++. .......... -..+++ .++.++.++.|+.|..+|.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~g~a~-------~~~~v~~~t~dg~l~AlD~ 134 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKR-----LWTYNHRLPDDIRPCCDVVNRGAAI-------YGDKVFFGTLDASVVALNK 134 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCE-----EEEEECCCCTTCCCSSCSCCCCCEE-------ETTEEEEEETTTEEEEEES
T ss_pred ECCEEEEEcCCCCEEEEECCCCcE-----EEEEcCCCCcccccccccCCCccEE-------ECCEEEEEeCCCEEEEEEC
Confidence 366777777755599999988862 2222211110 011112 1235889999999999999
Q ss_pred CCCceEEEEeCCCc----cEE-EEEecCC------eEEEEE------CCCeEEEEECC--ceeEEeecCCcC--------
Q 004329 100 GSGEKVQTLQGHKL----QVT-GVTLDNE------DIVSSS------VDSTLKRWRKG--KLVEFWEAHNAP-------- 152 (760)
Q Consensus 100 ~~~~~~~~l~~h~~----~V~-~l~~~~~------~l~sgs------~dg~v~vwd~~--~~~~~~~~~~~~-------- 152 (760)
.+|+.+........ .+. +-...++ .+++++ .+|.|..+|.. +.+.........
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~ 214 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKD 214 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcc
Confidence 99999887764321 111 1111223 566665 37889999864 444433211000
Q ss_pred --------------------------------e-EEEEEeCC-CcEEEEEC--------------------C----CcEE
Q 004329 153 --------------------------------I-QTVIRIPS-GEIVSGSS--------------------D----TTIK 174 (760)
Q Consensus 153 --------------------------------v-~~v~~~~~-~~l~tgs~--------------------d----g~i~ 174 (760)
+ ...++.++ +.++.++. | +.|.
T Consensus 215 ~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~ 294 (582)
T 1flg_A 215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV 294 (582)
T ss_dssp EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred cccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEE
Confidence 0 12345554 44555553 2 5788
Q ss_pred EEeCCCceE--Eeec--CC--------CceEEEEEe-CCC----eEEEEeCCCeEEEEec-CCceEEEeecCC-------
Q 004329 175 LWKGKKCAQ--TFVG--HT--------DTVRGLSVM-PGV----GIISASHDCTIRLWAL-TGQVLMEMVGHT------- 229 (760)
Q Consensus 175 iwd~~~~~~--~~~~--h~--------~~V~~l~~~-~~~----~l~s~s~dg~I~iwd~-~~~~~~~~~~h~------- 229 (760)
.+|..+... .++. |. .++. +... .++ .++.++.+|.++++|. +|+.+.......
T Consensus 295 AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 373 (582)
T 1flg_A 295 GVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASH 373 (582)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEE
T ss_pred EEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccc
Confidence 888654333 3322 22 1221 1221 234 3778899999999995 677766554321
Q ss_pred ------CcE--------------------------------EEEEEeCCC-eEEEEe-----------------------
Q 004329 230 ------AIV--------------------------------YSIDSHASG-LIVSGS----------------------- 247 (760)
Q Consensus 230 ------~~v--------------------------------~~v~~~p~~-~l~s~s----------------------- 247 (760)
.++ ..++++|+. .+++..
T Consensus 374 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 453 (582)
T 1flg_A 374 IDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM 453 (582)
T ss_dssp ECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecc
Confidence 000 023455554 333322
Q ss_pred ----------CCCcEEEEe--CCceEEEEecCCcEEEEEE-ccCCcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 248 ----------EDRFAKIWK--DGVCVQSIEHPGCVWDAKF-LENGDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 248 ----------~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~-~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.+|.|..|| +++.+....+..+++.-.. ..+|.++.++.||.++.||.++|+.+....
T Consensus 454 ~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 454 GFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 357788888 6777766664443332222 234457778889999999999998876544
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.83 E-value=0.018 Score=56.20 Aligned_cols=185 Identities=10% Similarity=0.079 Sum_probs=118.4
Q ss_pred CceEeEEeccCC--CCEEEEEEcCCCe-EEEEECC--CeEEEEeCCCCCCccceeeeEeeCC-CCCeEEEEEeCCCCCCC
Q 004329 8 EYQLSSELRGHE--DDVRGICVCDNVG-IATSSRD--RTVRFWSLDPSDKRKYHSSKILLGH-TSFVGPLAWISPNEEFP 81 (760)
Q Consensus 8 ~~~l~~~l~gH~--~~V~~v~~~~~~~-l~tgs~D--g~i~iWd~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~ 81 (760)
+|++++++ .|. .-...+.|++ +. +.+.+.+ +.|+.+|+.+++ ......-. ...-..++.. ++.
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-----v~~~~~l~~~~fgeGi~~~--~~~-- 76 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-----ILQRAEVPPPYFGAGIVAW--RDR-- 76 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-----EEEEEECCTTCCEEEEEEE--TTE--
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-----EEEEEeCCCCcceeEEEEe--CCE--
Confidence 57888888 564 4577899987 55 6666665 499999999887 22332221 2222344443 332
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeec--CC---cCeE
Q 004329 82 EGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEA--HN---APIQ 154 (760)
Q Consensus 82 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~--~~---~~v~ 154 (760)
+....-.++.+.+||..+.+.+.++.... .-..++.+++.++.+..++.|.++|.. +.+..+.. +. ..+.
T Consensus 77 --ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 77 --LIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp --EEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred --EEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 35556678999999999999999988433 336777888787777789999999975 44444432 21 2344
Q ss_pred EEEEeCCCcEEEEE-CCCcEEEEeCCC--ceEEeec-------------CCCceEEEEEeCCC-eEEEEe
Q 004329 155 TVIRIPSGEIVSGS-SDTTIKLWKGKK--CAQTFVG-------------HTDTVRGLSVMPGV-GIISAS 207 (760)
Q Consensus 155 ~v~~~~~~~l~tgs-~dg~i~iwd~~~--~~~~~~~-------------h~~~V~~l~~~~~~-~l~s~s 207 (760)
.+.+. +|++.+.. .+..|.+.|..+ ....+.- ..+..+.|++.|++ +|+..+
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 55555 67766555 577888888543 3333321 12356889999854 344443
No 264
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.83 E-value=0.0034 Score=66.89 Aligned_cols=212 Identities=12% Similarity=0.040 Sum_probs=128.3
Q ss_pred CCCe--EEEEECCCeEEEEeCCCCCCccceeeeEee------C-CCCCeEEEEEeCCCCCCCCcEEEEEeCC------Ce
Q 004329 29 DNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILL------G-HTSFVGPLAWISPNEEFPEGGLVSGGMD------TM 93 (760)
Q Consensus 29 ~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~~~~~~l~sgs~d------g~ 93 (760)
.+++ +++|-.+++|.++|+.+... .....+++. . ....-..+...|++ +++++..+ |.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG------i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPR-EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA------IYISALGNEEGEGPGG 165 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTT-SCEEEEEECHHHHHHHHCEEEEEEEEECSSC------EEEEEEEETTSCSCCE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCC-CceeeeeechhhcccccCCCcccceeECCCe------EEEEcCCCcCCCCCCe
Confidence 5666 77788899999999874432 223334442 1 11234456667776 25555544 78
Q ss_pred EEEEECCCCceEEEEeCCCcc---EEEEEec--CCeEEEEEC-------------------CCeEEEEECC--ceeEEee
Q 004329 94 VLVWDLGSGEKVQTLQGHKLQ---VTGVTLD--NEDIVSSSV-------------------DSTLKRWRKG--KLVEFWE 147 (760)
Q Consensus 94 I~vwd~~~~~~~~~l~~h~~~---V~~l~~~--~~~l~sgs~-------------------dg~v~vwd~~--~~~~~~~ 147 (760)
|.++|..+++.+.++...... -..+.|+ .+.+++..| +.+|.+||.. +.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999999999999888632221 2235555 455666653 6899999985 4445554
Q ss_pred cC--CcCeEEEEE--eCCCc--EEEEE-----CCCcEEEEeCCCc----eEEe--ec----------------CCCceEE
Q 004329 148 AH--NAPIQTVIR--IPSGE--IVSGS-----SDTTIKLWKGKKC----AQTF--VG----------------HTDTVRG 194 (760)
Q Consensus 148 ~~--~~~v~~v~~--~~~~~--l~tgs-----~dg~i~iwd~~~~----~~~~--~~----------------h~~~V~~ 194 (760)
.. ......+.| +|+++ ++++- .+++|.+|..... .+.+ .. -......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 32 123445555 88887 44555 6778876542111 1111 00 0234778
Q ss_pred EEEeCCCe--EEEEeCCCeEEEEecC----CceEEEeecCC--------------CcEEEEEEeCCC-eEEEEe
Q 004329 195 LSVMPGVG--IISASHDCTIRLWALT----GQVLMEMVGHT--------------AIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 195 l~~~~~~~--l~s~s~dg~I~iwd~~----~~~~~~~~~h~--------------~~v~~v~~~p~~-~l~s~s 247 (760)
|.++++++ +++.-..+.|.+||+. .+.+..+.... ..-..+.++|+| +|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999887 4444557899999974 23344433210 135788899999 666665
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.79 E-value=0.0065 Score=59.97 Aligned_cols=183 Identities=16% Similarity=0.133 Sum_probs=118.2
Q ss_pred ceEeEEeccCC--CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEE
Q 004329 9 YQLSSELRGHE--DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGL 85 (760)
Q Consensus 9 ~~l~~~l~gH~--~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l 85 (760)
.+.++++ .|. .-...+.|+. +. +.+.+.+|.|+++|+.+++. ...+......-..+++. +.. +.
T Consensus 43 ~~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv-----~~~~l~~~~FgeGit~~--g~~----Ly 109 (268)
T 3nok_A 43 AHIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQP-----VWMERLGNIFAEGLASD--GER----LY 109 (268)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSC-----SEEEECTTCCEEEEEEC--SSC----EE
T ss_pred eEEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcE-----EeEECCCCcceeEEEEe--CCE----EE
Confidence 3566777 454 3457899885 45 78888889999999998873 22222222233345553 332 35
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeec--CCc---CeEEEEE
Q 004329 86 VSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEA--HNA---PIQTVIR 158 (760)
Q Consensus 86 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~--~~~---~v~~v~~ 158 (760)
+..-.++.+.+||..+.+.+.++... ..-..++++++.++.+..++.|.++|.. +.+..+.. +.. .+..+.+
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 55667899999999999999998843 3346777888888888889999999975 44444432 222 3455666
Q ss_pred eCCCcEEEEE-CCCcEEEEeCCC--ceEEeec-------------CCCceEEEEEeCCCe-EEEE
Q 004329 159 IPSGEIVSGS-SDTTIKLWKGKK--CAQTFVG-------------HTDTVRGLSVMPGVG-IISA 206 (760)
Q Consensus 159 ~~~~~l~tgs-~dg~i~iwd~~~--~~~~~~~-------------h~~~V~~l~~~~~~~-l~s~ 206 (760)
. +|++.+.. .+..|.+.|..+ ....+.- ..+..+.|++.|++. |+..
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 6 67766555 577888888543 3333321 124568899998543 4443
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.78 E-value=0.0076 Score=67.92 Aligned_cols=268 Identities=11% Similarity=0.098 Sum_probs=147.9
Q ss_pred ccccC-CCceEeEEeccCCCC-----------EEEEEEc-CCCe----EEEEECCCeEEEEeCCCCCCccceeeeEeeCC
Q 004329 2 MDIDF-KEYQLSSELRGHEDD-----------VRGICVC-DNVG----IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH 64 (760)
Q Consensus 2 ~~~d~-~~~~l~~~l~gH~~~-----------V~~v~~~-~~~~----l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h 64 (760)
+.+|. .+.+.+.++...... .+.+++. .++. ++.++.|+.+.-+|..+++.. +.. ....+
T Consensus 76 ~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~-W~~--~~~~~ 152 (599)
T 1w6s_A 76 FALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV-WKV--ENSDI 152 (599)
T ss_dssp EEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE-EEE--ECCCG
T ss_pred EEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE-Eee--cCCCC
Confidence 44677 678877777643211 1234553 2445 889999999999999888731 111 11111
Q ss_pred C--CCeEEEEEeCCCCCCCCcEEEEEe------CCCeEEEEECCCCceEEEEeCCCcc----------------------
Q 004329 65 T--SFVGPLAWISPNEEFPEGGLVSGG------MDTMVLVWDLGSGEKVQTLQGHKLQ---------------------- 114 (760)
Q Consensus 65 ~--~~V~~l~~~~~~~~~~~~~l~sgs------~dg~I~vwd~~~~~~~~~l~~h~~~---------------------- 114 (760)
. ..+.+--...++ .+++++ .+|.|+.+|.++|+.+..+......
T Consensus 153 ~~~~~~~ssP~v~~g------~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g 226 (599)
T 1w6s_A 153 KVGSTLTIAPYVVKD------KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG 226 (599)
T ss_dssp GGTCBCCSCCEEETT------EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred CccceeecCCEEECC------EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccc
Confidence 0 011110000122 466665 3899999999999998887633211
Q ss_pred ---------------EE-EEEe--cCCeEEEEECCC----------------eEEEEECC--ceeEEeecCC--------
Q 004329 115 ---------------VT-GVTL--DNEDIVSSSVDS----------------TLKRWRKG--KLVEFWEAHN-------- 150 (760)
Q Consensus 115 ---------------V~-~l~~--~~~~l~sgs~dg----------------~v~vwd~~--~~~~~~~~~~-------- 150 (760)
+. .+++ ..+.++.++.++ .|..+|.. +.+..++...
T Consensus 227 ~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~ 306 (599)
T 1w6s_A 227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAG 306 (599)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred cccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccC
Confidence 00 2233 366777777653 67778764 5555554321
Q ss_pred --cCeEEEEEe-CCC---c-EEEEECCCcEEEEeCCCc--eEEeec-------------CCCce----------------
Q 004329 151 --APIQTVIRI-PSG---E-IVSGSSDTTIKLWKGKKC--AQTFVG-------------HTDTV---------------- 192 (760)
Q Consensus 151 --~~v~~v~~~-~~~---~-l~tgs~dg~i~iwd~~~~--~~~~~~-------------h~~~V---------------- 192 (760)
.++. +... .+| . ++.++.+|.++++|..+. +..... ...++
T Consensus 307 ~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 385 (599)
T 1w6s_A 307 VNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDI 385 (599)
T ss_dssp CCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEE
T ss_pred CCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEe
Confidence 1221 2222 456 3 556889999999985432 222210 00111
Q ss_pred ----------EEEEEeCCCe-EEEE---------------------------------e------CCCeEEEEec-CCce
Q 004329 193 ----------RGLSVMPGVG-IISA---------------------------------S------HDCTIRLWAL-TGQV 221 (760)
Q Consensus 193 ----------~~l~~~~~~~-l~s~---------------------------------s------~dg~I~iwd~-~~~~ 221 (760)
..++++|+.. +++. + .+|.|..||+ +++.
T Consensus 386 ~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~ 465 (599)
T 1w6s_A 386 CPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY 465 (599)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE
T ss_pred ccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE
Confidence 1344555332 2221 1 3478889996 5666
Q ss_pred EEEeecCCCcEE-EEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecCCcE--EEEEEccCCc
Q 004329 222 LMEMVGHTAIVY-SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCV--WDAKFLENGD 280 (760)
Q Consensus 222 ~~~~~~h~~~v~-~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v--~~v~~~~~g~ 280 (760)
+.+.... .+.. .......++++.++.|+.++.|| +++.+..++.+..+ .-+.+..+|+
T Consensus 466 ~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 466 KWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 6655421 1111 11122345777899999999999 88888888744322 2245556777
No 267
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.78 E-value=0.0086 Score=59.64 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=111.9
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeC--CCeEEEEECCCCceEEEEeCCC-ccEEEEEecCCeEEEEEC-CCeEEEEECC-
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGM--DTMVLVWDLGSGEKVQTLQGHK-LQVTGVTLDNEDIVSSSV-DSTLKRWRKG- 140 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~--dg~I~vwd~~~~~~~~~l~~h~-~~V~~l~~~~~~l~sgs~-dg~v~vwd~~- 140 (760)
.....+.|++++. ++++.+. ++.|+++|+.+++.+..+.-.. .....++++++.++.+.+ ++.+.++|..
T Consensus 21 ~f~~Gl~~~~dg~-----Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 21 AFTQGLVYAENDT-----LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CCEEEEEECSTTE-----EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred CCcccEEEeCCCe-----EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC
Confidence 3568999998753 2333333 6899999999999988875322 233467777777666664 6789999975
Q ss_pred -ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeec--CC---CceEEEEEeCCCeEE-EEeCCC
Q 004329 141 -KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVG--HT---DTVRGLSVMPGVGII-SASHDC 210 (760)
Q Consensus 141 -~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~--h~---~~V~~l~~~~~~~l~-s~s~dg 210 (760)
+.+..+......-+. +++++. ++++..++.|.++|..+ ....+.- +. ..++.+.+. ++.++ ....++
T Consensus 96 ~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 96 LSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp TEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred CcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 455555432111233 334554 66666788999999654 2333321 11 235677777 55644 444567
Q ss_pred eEEEEec-CCceEEEeecC-------------CCcEEEEEEeCCC--eEEEEeCCCcEEEEe
Q 004329 211 TIRLWAL-TGQVLMEMVGH-------------TAIVYSIDSHASG--LIVSGSEDRFAKIWK 256 (760)
Q Consensus 211 ~I~iwd~-~~~~~~~~~~h-------------~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd 256 (760)
.|.+.|. +++.+..+.-. ....+.++++|++ .++++...+.+...+
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 8888886 45555555421 1345677777776 556666666666655
No 268
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.76 E-value=0.055 Score=63.15 Aligned_cols=259 Identities=12% Similarity=0.099 Sum_probs=159.7
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
...|++|.-..+|.+..|+.+| +..||-.+-. .+... .......|.++....++ .|..|+.+| +..||
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~--~~~~~--~~~~~~~i~~i~~d~~g------~lWigT~~G-l~~yd 88 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQ--QHFTY--GENNNTRIYCGVIIDNT------YLYMGTDNG-ILVYN 88 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEE--ECSCT--TSTTSSCEEEEEEETTT------EEEEEETTE-EEEEE
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceE--EEEcc--CCCCCceEEEEEEcCCC------cEEEEeCCC-eEEEe
Confidence 5689999999999988888887 4456632110 00000 01124568888766655 478888765 78899
Q ss_pred CCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC-ceeEEee-----cCCcCeEEEEEeCCCcEEEEECCCc
Q 004329 99 LGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG-KLVEFWE-----AHNAPIQTVIRIPSGEIVSGSSDTT 172 (760)
Q Consensus 99 ~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~-----~~~~~v~~v~~~~~~~l~tgs~dg~ 172 (760)
..+.+...........|.++..+++.+..++.+ .+..++.. .....+. .....|.++....++.+..|+.+|
T Consensus 89 ~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G- 166 (758)
T 3ott_A 89 YRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG- 166 (758)
T ss_dssp TTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-
T ss_pred CCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-
Confidence 887643321111234577776667788888877 57778764 2233331 123468888888888888888654
Q ss_pred EEEEeCCCce-EEeec------CCCceEEEEEeCC-CeEEEEeCCCeEEEEecCCceEEEeec-CCCcEEEEEEeCCCeE
Q 004329 173 IKLWKGKKCA-QTFVG------HTDTVRGLSVMPG-VGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASGLI 243 (760)
Q Consensus 173 i~iwd~~~~~-~~~~~------h~~~V~~l~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-h~~~v~~v~~~p~~~l 243 (760)
+..++..... ..+.. ....|.++...++ +.+..|+. +-+..+|........+.. ....|.++...++|.+
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l 245 (758)
T 3ott_A 167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDL 245 (758)
T ss_dssp EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCE
T ss_pred HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCE
Confidence 7777754332 22211 1234888888764 44666664 468888875544433321 2346888888888866
Q ss_pred EEEeCCCcEEEEe-CCceEEEEec---------CCcEEEEEEccCCcEEEEEcCCcEEEEe
Q 004329 244 VSGSEDRFAKIWK-DGVCVQSIEH---------PGCVWDAKFLENGDIVTACSDGVTRIWT 294 (760)
Q Consensus 244 ~s~s~Dg~I~iwd-~~~~~~~~~~---------~~~v~~v~~~~~g~lvt~~~dg~I~vw~ 294 (760)
..|+.+| +.+++ .......+.+ ...|+++....+|.+-.|+..| +.++.
T Consensus 246 WigT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 246 LAGTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp EEEETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEEC
T ss_pred EEEeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccc
Confidence 6666554 77888 3223333332 2368999988888888888777 54443
No 269
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.71 E-value=0.0086 Score=59.07 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=111.0
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCC--eEEEEECCCCceEEEEeCCCcc-EEEEEecCCeEEEEEC-CCeEEEEECC
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDT--MVLVWDLGSGEKVQTLQGHKLQ-VTGVTLDNEDIVSSSV-DSTLKRWRKG 140 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg--~I~vwd~~~~~~~~~l~~h~~~-V~~l~~~~~~l~sgs~-dg~v~vwd~~ 140 (760)
..+...+.|+ ++. ++.+.+.+| .|+++|+.+++.+..+...... --.++..++.++...+ ++.+.+||..
T Consensus 42 ~~ftqGL~~~-~~~-----LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 42 KAFTEGFFYR-NGY-----FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp TCEEEEEEEE-TTE-----EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CcccceEEEE-CCE-----EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 3456889998 443 466666666 8999999999998887644332 2446777778766665 7889999975
Q ss_pred --ceeEEeecCCcCeEEEEEeCCCc-EEEEECCCcEEEEeCCC--ceEEeec--CC---CceEEEEEeCCCeEEEE-eCC
Q 004329 141 --KLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLWKGKK--CAQTFVG--HT---DTVRGLSVMPGVGIISA-SHD 209 (760)
Q Consensus 141 --~~~~~~~~~~~~v~~v~~~~~~~-l~tgs~dg~i~iwd~~~--~~~~~~~--h~---~~V~~l~~~~~~~l~s~-s~d 209 (760)
+.+..+..... -+.++ +++. ++.+..++.|.++|..+ ....+.- .. ..++.+.+. ++.+.+. -.+
T Consensus 116 t~~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 116 NLRQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp TCCEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred cCcEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 55666654322 23444 3444 66655678899999654 3333322 12 334567776 5664444 468
Q ss_pred CeEEEEec-CCceEEEeecC------------CCcEEEEEEeCCC-eEEEEe
Q 004329 210 CTIRLWAL-TGQVLMEMVGH------------TAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 210 g~I~iwd~-~~~~~~~~~~h------------~~~v~~v~~~p~~-~l~s~s 247 (760)
..|.+.|. +++.+..+.-. ....+.|+++|++ .|+..+
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 88999996 56666665421 2356889999887 444444
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.67 E-value=0.079 Score=55.31 Aligned_cols=236 Identities=12% Similarity=0.042 Sum_probs=140.9
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD 98 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd 98 (760)
.+..+|.+..++..|+.+ ..+.|+..++.... ...+.........++|.+.... ++++-...+.|+.++
T Consensus 33 ~d~~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~------~~~~~~~~~~~~~l~~d~~~~~----ly~~D~~~~~I~r~~ 101 (349)
T 3v64_C 33 PDRRSCKALGPEPVLLFA-NRIDIRQVLPHRSE------YTLLLNNLENAIALDFHHRREL----VFWSDVTLDRILRAN 101 (349)
T ss_dssp TTSSCEEESSSCCEEEEE-CBSCEEEECTTSCC------EEEEECSCSCEEEEEEETTTTE----EEEEETTTTEEEEEE
T ss_pred CCCCcccccccCceeEee-cccceEEEeCCCCe------eEEeecCCCceEEEEEeccccE----EEEEeccCCceEEEe
Confidence 344556665565444433 44568888876432 1222233445789999987653 344555678999999
Q ss_pred CCCCceEEEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECCce-eEE-eecCCcCeEEEEEeCC-CcEE-EEECC-
Q 004329 99 LGSGEKVQTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKGKL-VEF-WEAHNAPIQTVIRIPS-GEIV-SGSSD- 170 (760)
Q Consensus 99 ~~~~~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~~~-~~~-~~~~~~~v~~v~~~~~-~~l~-tgs~d- 170 (760)
+..+.....+.........++++ ++.+ ++-...+.|.+.+.... ... ..........+++.|. +.++ +-...
T Consensus 102 ~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp TTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred cCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 98665444443333344566665 5555 44455678888887532 222 2233456788999985 4444 44444
Q ss_pred CcEEEEeCCCc-eEEee-cCCCceEEEEEeC-CCeE-EEEeCCCeEEEEecCCceEEEee-cCCCcEEEEEEeCCCeEEE
Q 004329 171 TTIKLWKGKKC-AQTFV-GHTDTVRGLSVMP-GVGI-ISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASGLIVS 245 (760)
Q Consensus 171 g~i~iwd~~~~-~~~~~-~h~~~V~~l~~~~-~~~l-~s~s~dg~I~iwd~~~~~~~~~~-~h~~~v~~v~~~p~~~l~s 245 (760)
+.|..++.... ...+. ..-.....++++| ++.+ ++-+..+.|..+|+++.....+. .......++++..+..+++
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~t 261 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 261 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEe
Confidence 67888875432 22222 2334578999997 5554 45556788999998876554443 3345667777744336666
Q ss_pred EeCCCcEEEEe--CCceEEEEe
Q 004329 246 GSEDRFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 246 ~s~Dg~I~iwd--~~~~~~~~~ 265 (760)
-...+.|..++ +++....+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 66677777777 455444443
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.66 E-value=0.002 Score=63.66 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=115.6
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEEEecC
Q 004329 191 TVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHP 267 (760)
Q Consensus 191 ~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~ 267 (760)
....+.++.+..+.+.+.+|.|+++|+ +++.+..+......--.+++..+...+..-.++.+.+|| +.+.+.++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 357888885444888889999999997 566666652222233456665544555566789999999 77888899876
Q ss_pred CcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCCCcce
Q 004329 268 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQ 346 (760)
Q Consensus 268 ~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~ 346 (760)
..-|.++ ++++ ++.+..++.|+++|..+.+....+........+...--....+| +.....+. ...
T Consensus 136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG----------~lyanvw~-s~~ 202 (268)
T 3nok_A 136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG----------VIYANIWH-SSD 202 (268)
T ss_dssp SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT----------EEEEEETT-CSE
T ss_pred CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC----------EEEEEECC-CCe
Confidence 6657777 4566 66666799999999999988877665432222211100000011 11111111 122
Q ss_pred EEEEeeCCceEEEEEeccccc------eeeccceeeCCC--CCCCcccccCccceEEEEeec
Q 004329 347 TKVVREGDNGVAYSWDMKEQK------WDKLGEVVDGPD--DGMNRPILDGIQYDYVFDVDI 400 (760)
Q Consensus 347 ~~~v~~~~~~~~~~w~~~~~~------W~~~g~~~~~~~--~~~~~~~~~g~~yd~vf~vdi 400 (760)
+.++--..+.+...++...-. =...+++..+.+ +..+..+..||.|+.+|.|.+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 333333333344555543110 001223444332 234677779999999999876
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.66 E-value=0.0046 Score=71.04 Aligned_cols=255 Identities=9% Similarity=0.006 Sum_probs=132.4
Q ss_pred EEEEcC-CCe-EEEEECCC-----------eEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEe
Q 004329 24 GICVCD-NVG-IATSSRDR-----------TVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGG 89 (760)
Q Consensus 24 ~v~~~~-~~~-l~tgs~Dg-----------~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs 89 (760)
++++.+ +++ ++.|+.++ .+.+||..++. +....... .+.....++++..++. +++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~---w~~~~~~~~~~~~~~~~~~~~~~g~-----lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI---VSDRTVTVTKHDMFCPGISMDGNGQ-----IVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC---BCCCEEEECSCCCSSCEEEECTTSC-----EEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc---EEeCcccCCCCCCccccccCCCCCC-----EEEeCC
Confidence 456666 788 77777543 68899998665 33333332 2334445567777776 577777
Q ss_pred -CCCeEEEEECCCCceEEE--EeCCCccEEEEEe-cCCeEEEEE-CC-----CeEEEEECCceeEEeecC-C-cCe----
Q 004329 90 -MDTMVLVWDLGSGEKVQT--LQGHKLQVTGVTL-DNEDIVSSS-VD-----STLKRWRKGKLVEFWEAH-N-API---- 153 (760)
Q Consensus 90 -~dg~I~vwd~~~~~~~~~--l~~h~~~V~~l~~-~~~~l~sgs-~d-----g~v~vwd~~~~~~~~~~~-~-~~v---- 153 (760)
.++.+.+||..+++.... +........+..+ ++..++.|+ .+ ..+.+||........... . .+.
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 456899999987754332 1222222334445 455577777 44 468899986433322100 0 000
Q ss_pred EEEEEeCCCc-EEEEECC---------CcEEEEeCCCce--EEeecCC---------CceEEEEEeC-CCe-EEEEeCCC
Q 004329 154 QTVIRIPSGE-IVSGSSD---------TTIKLWKGKKCA--QTFVGHT---------DTVRGLSVMP-GVG-IISASHDC 210 (760)
Q Consensus 154 ~~v~~~~~~~-l~tgs~d---------g~i~iwd~~~~~--~~~~~h~---------~~V~~l~~~~-~~~-l~s~s~dg 210 (760)
....+..++. ++.|+.+ ..+..||..... .....+. ..-.++.+.. +++ ++.|+.++
T Consensus 342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 0001112333 3455444 346677754322 1111111 1223344433 555 66666432
Q ss_pred -----------eEEEEecCCceEEEee---cCCCc-EEEEEEeCCC-eEEEEeCC-----------CcEEEEeC-CceEE
Q 004329 211 -----------TIRLWALTGQVLMEMV---GHTAI-VYSIDSHASG-LIVSGSED-----------RFAKIWKD-GVCVQ 262 (760)
Q Consensus 211 -----------~I~iwd~~~~~~~~~~---~h~~~-v~~v~~~p~~-~l~s~s~D-----------g~I~iwd~-~~~~~ 262 (760)
.|.+||.....-.... .+... -.+.+..|++ .++.||.+ ..+.+||. ...-.
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 6778886554433332 12222 2345566788 77777754 46889992 22222
Q ss_pred EEe---cCC-cEEEEEEccCCc-EEEEEc
Q 004329 263 SIE---HPG-CVWDAKFLENGD-IVTACS 286 (760)
Q Consensus 263 ~~~---~~~-~v~~v~~~~~g~-lvt~~~ 286 (760)
.+. .+. ...+..+.|+|+ ++.||.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 222 222 223455678999 566664
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.66 E-value=0.044 Score=58.22 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=139.4
Q ss_pred EEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC
Q 004329 23 RGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG 102 (760)
Q Consensus 23 ~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~ 102 (760)
+|.+..++..| ..+....|+..++.... ...+.........++|.+.... ++++-...+.|+.+++..+
T Consensus 80 ~C~~~~~~~~l-~~~~~~~I~~i~~~~~~------~~~~~~~~~~~~gl~~d~~~~~----ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 80 SCKALGPEPVL-LFANRIDIRQVLPHRSE------YTLLLNNLENAIALDFHHRREL----VFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CEEECSSCCEE-EEECBSCEEEECTTSCC------CEEEECSCSCEEEEEEETTTTE----EEEEETTTTEEEEEETTSC
T ss_pred eECCcccccee-EeecCccceeeccCCCc------EEEEecCCCccEEEEEecCCCe----EEEEeCCCCcEEEEecCCC
Confidence 34444454433 33445678888887443 1222233456889999986653 3455567789999999866
Q ss_pred ceEEEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECCc-eeEE-eecCCcCeEEEEEeCCC-cEE-EEECC-CcEE
Q 004329 103 EKVQTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKGK-LVEF-WEAHNAPIQTVIRIPSG-EIV-SGSSD-TTIK 174 (760)
Q Consensus 103 ~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~~-~~~~-~~~~~~~v~~v~~~~~~-~l~-tgs~d-g~i~ 174 (760)
.....+.........++++ ++.| ++-...+.|.+.+... .... ..........+++.|.+ .++ +-... +.|.
T Consensus 149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 5444443333334455554 5555 4445567788887642 2222 23334567889999864 444 43344 6788
Q ss_pred EEeCCCc-eEEe-ecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEecCCceEEEee-cCCCcEEEEEEeCCCeEEEEeCC
Q 004329 175 LWKGKKC-AQTF-VGHTDTVRGLSVMP-GVG-IISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASGLIVSGSED 249 (760)
Q Consensus 175 iwd~~~~-~~~~-~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~~~~~~~~~~-~h~~~v~~v~~~p~~~l~s~s~D 249 (760)
.++.... ...+ ...-.....|+++| ++. +++-+..+.|..+|+++.....+. .......++++..+..+++-...
T Consensus 229 r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~ 308 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHT 308 (386)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTT
T ss_pred EEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCC
Confidence 8875532 2233 23344578999997 555 455556788999998876554443 23456678888544366666677
Q ss_pred CcEEEEe--CCceEEEEe
Q 004329 250 RFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 250 g~I~iwd--~~~~~~~~~ 265 (760)
+.|..++ ++.....+.
T Consensus 309 ~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCcceEEEc
Confidence 8888887 555555554
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.62 E-value=0.083 Score=54.26 Aligned_cols=217 Identities=14% Similarity=0.059 Sum_probs=130.3
Q ss_pred CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC----CceEEEEeCCCc
Q 004329 38 RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS----GEKVQTLQGHKL 113 (760)
Q Consensus 38 ~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~----~~~~~~l~~h~~ 113 (760)
..+.|+..|+.+... .. +.........++|.+.+.. ++++-..++.|..+++.. ......+...-.
T Consensus 8 ~~~~I~~i~~~~~~~-----~~-~~~~~~~p~g~~~d~~~~~----ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEY-----TS-LIPNLRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp CBSSEEEEETTSCCC-----EE-EECSCSSEEEEEEETTTTE----EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred CCCeEEEEECCCcce-----Ee-hhcCCCceEEEEEEeCCCE----EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 345788999885441 12 2233456789999987653 345556678999999875 222222332223
Q ss_pred cEEEEEec--CCeEE-EEECCCeEEEEECCc-eeEE-eecCCcCeEEEEEeCC-CcEEEEEC-C-CcEEEEeCCC-ceEE
Q 004329 114 QVTGVTLD--NEDIV-SSSVDSTLKRWRKGK-LVEF-WEAHNAPIQTVIRIPS-GEIVSGSS-D-TTIKLWKGKK-CAQT 184 (760)
Q Consensus 114 ~V~~l~~~--~~~l~-sgs~dg~v~vwd~~~-~~~~-~~~~~~~v~~v~~~~~-~~l~tgs~-d-g~i~iwd~~~-~~~~ 184 (760)
....++++ ++.++ +-...+.|.+.+... .... ..........+++.|. +.++.+.. . +.|..++... ....
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 44666664 55554 445678899998753 2222 3333456788999985 55544443 3 6788887543 3333
Q ss_pred ee-cCCCceEEEEEeC-CCeE-EEEeCCCeEEEEecCCceEEEeec---CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--
Q 004329 185 FV-GHTDTVRGLSVMP-GVGI-ISASHDCTIRLWALTGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 185 ~~-~h~~~V~~l~~~~-~~~l-~s~s~dg~I~iwd~~~~~~~~~~~---h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-- 256 (760)
+. ..-.....+++.+ ++.+ ++-+..+.|..+|+++.....+.. ......++++..+..+++-...+.|..++
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 32 2345678999997 4554 444566799999998765555432 23456778876433666666777888887
Q ss_pred CCceEEEE
Q 004329 257 DGVCVQSI 264 (760)
Q Consensus 257 ~~~~~~~~ 264 (760)
+++....+
T Consensus 238 ~g~~~~~i 245 (316)
T 1ijq_A 238 TGSDVNLL 245 (316)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEE
Confidence 45544444
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.54 E-value=0.092 Score=53.92 Aligned_cols=210 Identities=11% Similarity=-0.000 Sum_probs=133.9
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEE-ECCCeEEEEECCc-----eeEE-eecCCcCeEEEEEeC-
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSS-SVDSTLKRWRKGK-----LVEF-WEAHNAPIQTVIRIP- 160 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sg-s~dg~v~vwd~~~-----~~~~-~~~~~~~v~~v~~~~- 160 (760)
...|+..|+.+.+....+. ......+++|+ ++.++.+ ..++.|..++... .... +.........+++.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3568899998776655544 34567888887 4555554 4568898887653 2222 222223456888886
Q ss_pred CCcE-EEEECCCcEEEEeCCCc-eEEe-ecCCCceEEEEEeC-CCeEEEEeC-C-CeEEEEecCCceEEEee-cCCCcEE
Q 004329 161 SGEI-VSGSSDTTIKLWKGKKC-AQTF-VGHTDTVRGLSVMP-GVGIISASH-D-CTIRLWALTGQVLMEMV-GHTAIVY 233 (760)
Q Consensus 161 ~~~l-~tgs~dg~i~iwd~~~~-~~~~-~~h~~~V~~l~~~~-~~~l~s~s~-d-g~I~iwd~~~~~~~~~~-~h~~~v~ 233 (760)
.+.+ ++-...+.|.+++.... ...+ .......+.+++.| ++.++.+.. . +.|...+++|.....+. ..-....
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCce
Confidence 4555 45566788999986542 2333 23445788999998 566544443 3 78999999887665553 2345788
Q ss_pred EEEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEe-c---CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeec
Q 004329 234 SIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-H---PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 234 ~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~-~---~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
.+++++++ ++++-+..+.|..+| .+...+.+. . ......+++. .+. +++-...+.|..++..+++...
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 99999876 455556677899999 444444442 1 2356778875 355 4555557889999887766443
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.47 E-value=0.1 Score=54.44 Aligned_cols=198 Identities=9% Similarity=-0.057 Sum_probs=119.8
Q ss_pred CCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
.....++|.+ ++. +++-...+.|..++++... ..............+++.+.+.. +.++-...+.|.+.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----~~~~~~~~~~~p~glavd~~~g~----ly~~d~~~~~I~~~ 143 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----VEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVA 143 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC-----ceEEEeCCCCCccEEEEecCCCe----EEEEcCCCCeEEEE
Confidence 3467899985 455 5555567889999987443 11222222344568888875542 34555667899999
Q ss_pred ECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC--CeEEEEECCc-eeEEee-cCCcCeEEEEEeCC-CcEE-EEEC
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD--STLKRWRKGK-LVEFWE-AHNAPIQTVIRIPS-GEIV-SGSS 169 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--g~v~vwd~~~-~~~~~~-~~~~~v~~v~~~~~-~~l~-tgs~ 169 (760)
+++.......+...-.....++++ ++.++...+. +.|..++... ....+. ..-.....++++++ +.+. +-+.
T Consensus 144 ~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp ETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 987554333343344567788887 5666555543 6677777642 222322 23345678999975 4454 4455
Q ss_pred CCcEEEEeCCC-ceEE-eecCCCceEEEEEeCCCeEEEEeCCCeEEEEe-cCCceEEEee
Q 004329 170 DTTIKLWKGKK-CAQT-FVGHTDTVRGLSVMPGVGIISASHDCTIRLWA-LTGQVLMEMV 226 (760)
Q Consensus 170 dg~i~iwd~~~-~~~~-~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd-~~~~~~~~~~ 226 (760)
.+.|..+|... ..+. +........++++..+..+++-...+.|..++ .+|+....+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 67899888543 2233 22334556778875443356666677888887 5666555554
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.45 E-value=0.066 Score=56.82 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=121.3
Q ss_pred CCEEEEEEcC-CCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCD-NVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~-~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
.....++|.+ ++. +++-...+.|+.++++... ..............+++.+.+.. +.++-...+.|.+.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----~~~~~~~~~~~p~glavd~~~g~----lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----VEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVA 186 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----EEEEECSSCSCCCCEEEETTTTE----EEEEETTTTEEEEC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----cEEEEeCCCCCccEEEEEeCCCe----EEEEcCCCCeEEEE
Confidence 4577899985 455 5555667889999987433 11222222334567888775542 34555667889998
Q ss_pred ECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC--CeEEEEECC-ceeEEe-ecCCcCeEEEEEeCC-CcEE-EEEC
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD--STLKRWRKG-KLVEFW-EAHNAPIQTVIRIPS-GEIV-SGSS 169 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--g~v~vwd~~-~~~~~~-~~~~~~v~~v~~~~~-~~l~-tgs~ 169 (760)
+++.......+...-.....++++ ++.++...+. +.|..++.. .....+ ...-.....++++++ ++++ +-+.
T Consensus 187 ~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 187 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp BTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred eCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence 887544333344444567788887 5666655544 567777764 222232 233345678999975 4554 5455
Q ss_pred CCcEEEEeCCC-ceEEe-ecCCCceEEEEEeCCCeEEEEeCCCeEEEEe-cCCceEEEeec
Q 004329 170 DTTIKLWKGKK-CAQTF-VGHTDTVRGLSVMPGVGIISASHDCTIRLWA-LTGQVLMEMVG 227 (760)
Q Consensus 170 dg~i~iwd~~~-~~~~~-~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~ 227 (760)
.+.|..+|... ..+.+ ........++++..+..+++-...+.|..++ .+|+....+..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 67899888543 22322 2334456788885444466666778888888 56766665554
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.44 E-value=0.11 Score=51.39 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=125.2
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe-CCCccEEEEEec-CCeE-EEEECCCeEE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ-GHKLQVTGVTLD-NEDI-VSSSVDSTLK 135 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~~-~~~l-~sgs~dg~v~ 135 (760)
+.+.+-...+..++|.|++.. ++++...++.|...|.. ++.++.+. +-......+++. ++.+ ++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~----L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNT----LFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTE----EEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCE----EEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 345566678999999998653 45567788999999998 88877764 223567778876 4555 4434667788
Q ss_pred EEECC--c---eeEEee------cCCcCeEEEEEeCCC-cEEEEECCCcEEEEeCC-----CceEEee-------cCCCc
Q 004329 136 RWRKG--K---LVEFWE------AHNAPIQTVIRIPSG-EIVSGSSDTTIKLWKGK-----KCAQTFV-------GHTDT 191 (760)
Q Consensus 136 vwd~~--~---~~~~~~------~~~~~v~~v~~~~~~-~l~tgs~dg~i~iwd~~-----~~~~~~~-------~h~~~ 191 (760)
+++.. . ...... ..+.....+++.|.+ +++++.......+|... ....... .+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 87543 1 112221 124456899999987 46666655554454422 1122221 13345
Q ss_pred eEEEEEeCC-Ce-EEEEeCCCeEEEEecCCceEEEeecCC---------CcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 192 VRGLSVMPG-VG-IISASHDCTIRLWALTGQVLMEMVGHT---------AIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 192 V~~l~~~~~-~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~---------~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
+.+++++|. ++ ++.......+..+|.+|+.+..+.-.. ..--.|++.++|.++..++-+.++++.
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 789999994 33 667777888999999988766654221 366889999998555557777666665
No 279
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.44 E-value=0.02 Score=55.92 Aligned_cols=200 Identities=15% Similarity=0.128 Sum_probs=117.2
Q ss_pred CceEEEEEeCCCeEEEEeCCC--eEEEEec-CCceEEEeecC-CCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCceEEE
Q 004329 190 DTVRGLSVMPGVGIISASHDC--TIRLWAL-TGQVLMEMVGH-TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQS 263 (760)
Q Consensus 190 ~~V~~l~~~~~~~l~s~s~dg--~I~iwd~-~~~~~~~~~~h-~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~~~~ 263 (760)
.....+.|+++..+.+.+.+| .|+.+|+ +++.+....-. ...--.++...+......-.++.+.+|| +.+.+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 446789998744466777754 8999997 56666665432 2233455655444555567789999999 7788899
Q ss_pred EecCCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCceeeccCC
Q 004329 264 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGT 342 (760)
Q Consensus 264 ~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~~g~ 342 (760)
+..+..-|.++ +++. ++.+..++.|.++|..+.+...+++.......+...-..... +.+.....+.
T Consensus 101 i~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~----------~G~lyanvw~ 168 (243)
T 3mbr_X 101 FRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV----------NGELLANVWL 168 (243)
T ss_dssp EECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE----------TTEEEEEETT
T ss_pred EeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe----------CCEEEEEECC
Confidence 98777667777 4555 777777999999999999888776654322221111000000 1111111122
Q ss_pred CcceEEEEeeCCceEEEEEeccccc---e---eeccceeeCCC--CCCCcccccCccceEEEEeecCC
Q 004329 343 NAGQTKVVREGDNGVAYSWDMKEQK---W---DKLGEVVDGPD--DGMNRPILDGIQYDYVFDVDIGD 402 (760)
Q Consensus 343 ~~g~~~~v~~~~~~~~~~w~~~~~~---W---~~~g~~~~~~~--~~~~~~~~~g~~yd~vf~vdi~~ 402 (760)
.+ .+.++--..+.++-.++...-. . ...++|..+.. +..+..+..||.|+.+|.|.+.+
T Consensus 169 s~-~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~ 235 (243)
T 3mbr_X 169 TS-RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP 235 (243)
T ss_dssp TT-EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred CC-eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence 11 2333333333444555543210 0 01223433322 22466777999999999999865
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.028 Score=60.67 Aligned_cols=223 Identities=8% Similarity=-0.038 Sum_probs=130.6
Q ss_pred CeEEEEEeCC-CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC-C----eEEEEE
Q 004329 67 FVGPLAWISP-NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD-S----TLKRWR 138 (760)
Q Consensus 67 ~V~~l~~~~~-~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d-g----~v~vwd 138 (760)
....++++|. .. .|+.+...+.|+.+|+.++..... .........++++ ++.++.+... + .+...+
T Consensus 138 ~P~~lavdp~~~g-----~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-----HLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEE-----EEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCC-----eEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 3467888873 33 366666658899999987654433 3345667889997 4546666542 2 233333
Q ss_pred CC-cee--EEeecCCcCeEEEEEeC-CCcEEEEE-CCCcEEEEeCCCceE-Eeec--CCCceEEEEEeCCCe-E-EEEeC
Q 004329 139 KG-KLV--EFWEAHNAPIQTVIRIP-SGEIVSGS-SDTTIKLWKGKKCAQ-TFVG--HTDTVRGLSVMPGVG-I-ISASH 208 (760)
Q Consensus 139 ~~-~~~--~~~~~~~~~v~~v~~~~-~~~l~tgs-~dg~i~iwd~~~~~~-~~~~--h~~~V~~l~~~~~~~-l-~s~s~ 208 (760)
.. ... ..+.. ......+++.| ++.++.+. .++.|..++...... .+.. .....+.++++|++. + ++-..
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 32 111 22221 23356788899 67766544 668899998654332 2221 224578999999776 4 44456
Q ss_pred CCeEEEEecCCc--e---EEEeecC---------------CCcEE-EEEEe--------CCC-eEEEEeCCCcEEEEe-C
Q 004329 209 DCTIRLWALTGQ--V---LMEMVGH---------------TAIVY-SIDSH--------ASG-LIVSGSEDRFAKIWK-D 257 (760)
Q Consensus 209 dg~I~iwd~~~~--~---~~~~~~h---------------~~~v~-~v~~~--------p~~-~l~s~s~Dg~I~iwd-~ 257 (760)
.+.|..++.++. . ...+.+. -.... .++.. +++ ++++-...+.|+.++ .
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~ 370 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ 370 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence 788999886542 1 2222221 01223 45554 345 555555677888888 5
Q ss_pred CceEEEEec---------C---------CcEEEEEEcc-CCcEEEEEc-CCcEEEEeCC
Q 004329 258 GVCVQSIEH---------P---------GCVWDAKFLE-NGDIVTACS-DGVTRIWTVH 296 (760)
Q Consensus 258 ~~~~~~~~~---------~---------~~v~~v~~~~-~g~lvt~~~-dg~I~vw~~~ 296 (760)
+........ . ...+.+++.| +|.++.+.. +..|+.++.+
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 544333322 1 1578999999 566555544 6788887754
No 281
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.35 E-value=0.17 Score=51.49 Aligned_cols=193 Identities=10% Similarity=0.060 Sum_probs=109.7
Q ss_pred eEEEEeCCCccEEEEEec-CCeEEEEE-CCCeEEEEECCceeEEeecCCcCeEEEEEeCCCcEEEEEC--CC-cEEEEeC
Q 004329 104 KVQTLQGHKLQVTGVTLD-NEDIVSSS-VDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSS--DT-TIKLWKG 178 (760)
Q Consensus 104 ~~~~l~~h~~~V~~l~~~-~~~l~sgs-~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~l~tgs~--dg-~i~iwd~ 178 (760)
.+..+... .....++++ ++.++.+. .++.|..||.................+++.++++++.+.. ++ .|..+|.
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 34444322 456677886 44444444 7788888886533333222345678899999998665552 22 4666663
Q ss_pred CC-ceEEeec--CCCceEEEEEeCCCeEEEEe-CCCeEEEEecCCc--eEEEee---------cCCCcEEEEEEeCCC--
Q 004329 179 KK-CAQTFVG--HTDTVRGLSVMPGVGIISAS-HDCTIRLWALTGQ--VLMEMV---------GHTAIVYSIDSHASG-- 241 (760)
Q Consensus 179 ~~-~~~~~~~--h~~~V~~l~~~~~~~l~s~s-~dg~I~iwd~~~~--~~~~~~---------~h~~~v~~v~~~p~~-- 241 (760)
.. ....+.. .......++..+++.++.+. .++.|.++|..+. .+.... ..-.....+ ++++
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 32 2222222 22234556666666644444 5889999997542 121111 111245556 6776
Q ss_pred eEEEEeCCCcEEEEe-C--Cce--EEEEecCCcEEEEEEccCCcEEEEE-cCCcEEEEeCCCCee
Q 004329 242 LIVSGSEDRFAKIWK-D--GVC--VQSIEHPGCVWDAKFLENGDIVTAC-SDGVTRIWTVHSDKV 300 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd-~--~~~--~~~~~~~~~v~~v~~~~~g~lvt~~-~dg~I~vw~~~~~~~ 300 (760)
++++-...+.|..++ . +.. ...+........+++.++|.+.++. ..+.|.+|+.+ ++.
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 556666778899998 2 221 1222222345678899999954444 47889999875 443
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.33 E-value=0.24 Score=52.75 Aligned_cols=223 Identities=13% Similarity=0.039 Sum_probs=137.4
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----ceEEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----EKVQTL 108 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l 108 (760)
++.-+....|+..+++... ...+......+..++|.+.... ++++-...+.|+.+++... .....+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~------~~~~~~~~~~~~~l~~d~~~~~----lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSE------YTSLIPNLRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp EEEEEETTEEEEECTTSCS------CEEEECSCSCEEEEEEETTTTE----EEEEETTTTEEEEEEC------CCCEEEE
T ss_pred eeEEeccceeEEEccCCcc------eeEeccccCcceEEeeeeccCc----eEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 3344445789999987443 1223334567889999987653 3445556788999998752 233333
Q ss_pred eCCCccEEEEEec--CCeEEE-EECCCeEEEEECCc-ee-EEeecCCcCeEEEEEeCC-CcEEEEEC--CCcEEEEeCCC
Q 004329 109 QGHKLQVTGVTLD--NEDIVS-SSVDSTLKRWRKGK-LV-EFWEAHNAPIQTVIRIPS-GEIVSGSS--DTTIKLWKGKK 180 (760)
Q Consensus 109 ~~h~~~V~~l~~~--~~~l~s-gs~dg~v~vwd~~~-~~-~~~~~~~~~v~~v~~~~~-~~l~tgs~--dg~i~iwd~~~ 180 (760)
.........++++ ++.|+. -...+.|.+.+... .. ..+.........+++.|. +.++.... .+.|...+...
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 3344566777775 555544 45677888888752 22 223334455789999985 55544432 36788887553
Q ss_pred c-eEEe-ecCCCceEEEEEeC-CCeEEEE-eCCCeEEEEecCCceEEEeec---CCCcEEEEEEeCCCeEEEEeCCCcEE
Q 004329 181 C-AQTF-VGHTDTVRGLSVMP-GVGIISA-SHDCTIRLWALTGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAK 253 (760)
Q Consensus 181 ~-~~~~-~~h~~~V~~l~~~~-~~~l~s~-s~dg~I~iwd~~~~~~~~~~~---h~~~v~~v~~~p~~~l~s~s~Dg~I~ 253 (760)
. ...+ ...-.....|++.+ ++.++.+ +..+.|..+|++|.....+.. .-....++++..+..+++-...+.|.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 314 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEE
Confidence 2 2333 23335788999997 4555444 557889999998866555532 23456788875554666767778888
Q ss_pred EEe--CCceEEEEe
Q 004329 254 IWK--DGVCVQSIE 265 (760)
Q Consensus 254 iwd--~~~~~~~~~ 265 (760)
.+| +++.+..+.
T Consensus 315 ~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 315 SANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCCCCEEEE
T ss_pred EEEcCCCCceEEEe
Confidence 887 565555554
No 283
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.31 E-value=0.0088 Score=66.04 Aligned_cols=213 Identities=11% Similarity=0.072 Sum_probs=130.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCC---------------------------------C--------ccEEEEEe--
Q 004329 84 GLVSGGMDTMVLVWDLGSGEKVQTLQGH---------------------------------K--------LQVTGVTL-- 120 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h---------------------------------~--------~~V~~l~~-- 120 (760)
.+.+|+..|.++|+-+.+++.+..+.-. . ..-..+++
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 4788999999999999888777665211 0 01134555
Q ss_pred ---cCCeEEEEE-CCCeEEEEECC--ceeEEeecC-CcCeEEEEE-e-CCCc-EEEEE------------------CCCc
Q 004329 121 ---DNEDIVSSS-VDSTLKRWRKG--KLVEFWEAH-NAPIQTVIR-I-PSGE-IVSGS------------------SDTT 172 (760)
Q Consensus 121 ---~~~~l~sgs-~dg~v~vwd~~--~~~~~~~~~-~~~v~~v~~-~-~~~~-l~tgs------------------~dg~ 172 (760)
++++++... .++.|.+.|.. ++...+... ......+.+ . |++. +++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 344544444 45679999876 444433432 345777877 4 7776 44553 2356
Q ss_pred EEEEeCCCceEEeecC-CCceEEEEEeCCCe-EEEEeCCC---------------e-----------------------E
Q 004329 173 IKLWKGKKCAQTFVGH-TDTVRGLSVMPGVG-IISASHDC---------------T-----------------------I 212 (760)
Q Consensus 173 i~iwd~~~~~~~~~~h-~~~V~~l~~~~~~~-l~s~s~dg---------------~-----------------------I 212 (760)
+.++|..+.....+-. .+....++++|++. +++++.+. . |
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 8888866533322210 12346677888766 55555332 2 4
Q ss_pred EEEecCC---ce-EEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEeCCc--------------eEEEEecCCcEEE
Q 004329 213 RLWALTG---QV-LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWKDGV--------------CVQSIEHPGCVWD 272 (760)
Q Consensus 213 ~iwd~~~---~~-~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd~~~--------------~~~~~~~~~~v~~ 272 (760)
.+.|... .. +..+. -.....++.++||| .++++..+.+|.++|..+ ....+......+.
T Consensus 257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 4444332 22 22221 12344678899999 566666889999999332 3444455568999
Q ss_pred EEEccCCc-EEEEEcCCcEEEEeCCC
Q 004329 273 AKFLENGD-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 273 v~~~~~g~-lvt~~~dg~I~vw~~~~ 297 (760)
++|+|+|. +++.--|+.|.+|+++.
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhH
Confidence 99999997 44555599999999876
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.28 E-value=0.11 Score=53.36 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=131.8
Q ss_pred CCCeEEEEECCCCc-eEEEEeCCCccEEEEEec--CCeEE-EEECCCeEEEEECCce---eEEeecCCcCeEEEEEeC-C
Q 004329 90 MDTMVLVWDLGSGE-KVQTLQGHKLQVTGVTLD--NEDIV-SSSVDSTLKRWRKGKL---VEFWEAHNAPIQTVIRIP-S 161 (760)
Q Consensus 90 ~dg~I~vwd~~~~~-~~~~l~~h~~~V~~l~~~--~~~l~-sgs~dg~v~vwd~~~~---~~~~~~~~~~v~~v~~~~-~ 161 (760)
....|+..++.... ....+........+++|+ ++.++ +-...+.|..++.... .......-.....+++.+ .
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 35678999997653 111111122356678886 45544 4456678888876422 122222233456788886 4
Q ss_pred CcE-EEEECCCcEEEEeCCCc-eEEe-ecCCCceEEEEEeC-CCeEEEEe--CCCeEEEEecCCceEEEee-cCCCcEEE
Q 004329 162 GEI-VSGSSDTTIKLWKGKKC-AQTF-VGHTDTVRGLSVMP-GVGIISAS--HDCTIRLWALTGQVLMEMV-GHTAIVYS 234 (760)
Q Consensus 162 ~~l-~tgs~dg~i~iwd~~~~-~~~~-~~h~~~V~~l~~~~-~~~l~s~s--~dg~I~iwd~~~~~~~~~~-~h~~~v~~ 234 (760)
+.+ ++-...+.|.+++.... ...+ .......+.+++.| ++.++.+. ..+.|...+++|.....+. ..-.....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 554 45556778999986542 2333 24446678999998 46655554 3578999999887655543 23356789
Q ss_pred EEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEe--cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 235 IDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 235 v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~--~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
+++++++ +.++-+..+.|..+| .+...+.+. .-.....+++..++-+++-...+.|..++..+++...
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 9999865 555556778899998 444434333 2335677777543325565557889999987776543
No 285
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.14 E-value=0.27 Score=49.69 Aligned_cols=250 Identities=9% Similarity=0.158 Sum_probs=157.8
Q ss_pred CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEE
Q 004329 40 RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVT 119 (760)
Q Consensus 40 g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 119 (760)
..|.|-|+..+... .+.-..-. +.-.+|..+ +++--...++.++|+++.+.++...- ...|.-..
T Consensus 49 ~~VvIiDl~n~~~~----~Rrpi~Ad----sAIMnP~~~------ViALrag~~LQiFnletK~klks~~~-~e~VvfWk 113 (365)
T 2xzh_A 49 AQVVIIDMNDPSNP----IRRPISAD----SAIMNPASK------VIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWK 113 (365)
T ss_dssp EEEEEEETTSTTSC----EEEECCCS----EEEECSSSS------EEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEE
T ss_pred CEEEEEECCCCCCc----cccccccc----eeeeCCCcc------EEEEecCCeEEEechHHhhhhcceec-CCccEEEE
Confidence 36777787754421 11111111 333467665 33333478899999999988887764 45777777
Q ss_pred ec-CCeEEEEECCCeEEEEECC---ceeEEeecCC----cCeEEEEEeCCCc--EEEEE------CCCcEEEEeCC-Cce
Q 004329 120 LD-NEDIVSSSVDSTLKRWRKG---KLVEFWEAHN----APIQTVIRIPSGE--IVSGS------SDTTIKLWKGK-KCA 182 (760)
Q Consensus 120 ~~-~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~----~~v~~v~~~~~~~--l~tgs------~dg~i~iwd~~-~~~ 182 (760)
|- ++.+...+ +..|+.|+.. .+...+..|. ..|..-..+++.+ +++|- -.|.+.+|... +..
T Consensus 114 Wis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s 192 (365)
T 2xzh_A 114 WISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 192 (365)
T ss_dssp ECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE
T ss_pred ecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc
Confidence 75 55554444 5679999874 6667776653 4555666667666 33332 23678899855 455
Q ss_pred EEeecCCCceEEEEEeCC---CeEEE-EeC---CCeEEEEecC----Cce------EEEeec---CCCcEEEEEEeCCC-
Q 004329 183 QTFVGHTDTVRGLSVMPG---VGIIS-ASH---DCTIRLWALT----GQV------LMEMVG---HTAIVYSIDSHASG- 241 (760)
Q Consensus 183 ~~~~~h~~~V~~l~~~~~---~~l~s-~s~---dg~I~iwd~~----~~~------~~~~~~---h~~~v~~v~~~p~~- 241 (760)
+.+++|...-..+.+..+ ..+++ +.. .+.+++-++. +.. +..+.. ..+...++..++.-
T Consensus 193 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg 272 (365)
T 2xzh_A 193 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT
T ss_pred ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC
Confidence 678888665544433221 12332 222 2688888862 211 111112 25567788888765
Q ss_pred eEEEEeCCCcEEEEe--CCceEEEEe-cCCcEEEEEEccC-CcEEEEEcCCcEEEEeCCCCeeechhh
Q 004329 242 LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN-GDIVTACSDGVTRIWTVHSDKVADSLE 305 (760)
Q Consensus 242 ~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~v~~v~~~~~-g~lvt~~~dg~I~vw~~~~~~~~~~~~ 305 (760)
.+..-+.-|.+++|| ++.++..-+ ...+|...+...+ +.++.....|.|.--.++....+.-+.
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~ 340 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYIT 340 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHHHH
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehhhh
Confidence 888889999999999 888887766 4447766665444 448888899999999999888766543
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.12 E-value=0.28 Score=50.35 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=133.9
Q ss_pred ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce-EEEEeCCCccE
Q 004329 37 SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK-VQTLQGHKLQV 115 (760)
Q Consensus 37 s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~V 115 (760)
+....|+..+++..... . ............+.|.+.... ++++-...+.|..+++..+.. ...+...-...
T Consensus 10 ~~~~~I~~i~l~~~~~~-~---~~~~~~~~~~~~ld~d~~~~~----lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 10 ANRRDLRLVDATNGKEN-A---TIVVGGLEDAAAVDFVFSHGL----IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp ECEEEEEEEETTCTTSC-C---EEEEEEEEEEEEEEEEGGGTE----EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EccCeEEEEECCCCceE-E---EEEecCCCccEEEEEEeCCCE----EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34578999999854311 1 111112235678999986552 355556678899999876532 12222222334
Q ss_pred EEEEec--CCeE-EEEECCCeEEEEECCc-eeEEe-ecCCcCeEEEEEeCC-CcEEEEEC--CCcEEEEeCCC-ceEEe-
Q 004329 116 TGVTLD--NEDI-VSSSVDSTLKRWRKGK-LVEFW-EAHNAPIQTVIRIPS-GEIVSGSS--DTTIKLWKGKK-CAQTF- 185 (760)
Q Consensus 116 ~~l~~~--~~~l-~sgs~dg~v~vwd~~~-~~~~~-~~~~~~v~~v~~~~~-~~l~tgs~--dg~i~iwd~~~-~~~~~- 185 (760)
..++++ ++.+ ++-...+.|.+++... ....+ .........+++.|. +.++.... .+.|..++... ....+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 456664 5554 4445667898988753 22222 244456788999985 55554442 57788887543 22333
Q ss_pred ecCCCceEEEEEeC-CCeE-EEEeCCCeEEEEecCCceEEEeec-CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCce
Q 004329 186 VGHTDTVRGLSVMP-GVGI-ISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVC 260 (760)
Q Consensus 186 ~~h~~~V~~l~~~~-~~~l-~s~s~dg~I~iwd~~~~~~~~~~~-h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~~ 260 (760)
...-.....+++++ ++.+ ++=+..+.|..+|++|.....+.. ......++++..++.+++-...+.|..++ +++.
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 22334678999998 5554 455567889999998765555443 44567788886555666666778888888 4555
Q ss_pred EEEEe
Q 004329 261 VQSIE 265 (760)
Q Consensus 261 ~~~~~ 265 (760)
...+.
T Consensus 242 ~~~i~ 246 (318)
T 3sov_A 242 LREIH 246 (318)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55554
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.12 E-value=0.24 Score=48.75 Aligned_cols=200 Identities=9% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCCceEeE---EeccCCCCEEEEEEcCCCe--EEEEECCCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCC
Q 004329 6 FKEYQLSS---ELRGHEDDVRGICVCDNVG--IATSSRDRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEE 79 (760)
Q Consensus 6 ~~~~~l~~---~l~gH~~~V~~v~~~~~~~--l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~ 79 (760)
++.|++.- .+.|-.+.+..++++|++. +++...++.|...|.. ++ ....+. +.......|++.+++.
T Consensus 10 l~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-----v~~~i~l~g~~D~EGIa~~~~g~- 82 (255)
T 3qqz_A 10 FQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-----LIRTIPLDFVKDLETIEYIGDNQ- 82 (255)
T ss_dssp CTTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-----EEEEEECSSCSSEEEEEECSTTE-
T ss_pred ccceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-----EEEEEecCCCCChHHeEEeCCCE-
Confidence 45566554 4667778899999998754 4456778888888886 54 222321 2235677888887765
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCce---EEEEe------CCCccEEEEEec--CCeEEEEECCCeEEEEECC-----cee
Q 004329 80 FPEGGLVSGGMDTMVLVWDLGSGEK---VQTLQ------GHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG-----KLV 143 (760)
Q Consensus 80 ~~~~~l~sgs~dg~I~vwd~~~~~~---~~~l~------~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~-----~~~ 143 (760)
++++.-.++.+.++++..... +.... .++.....++++ ++.|+++.......+|... ..+
T Consensus 83 ----~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 83 ----FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp ----EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred ----EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 445555678899998765432 22221 134456889997 4467777665555555331 112
Q ss_pred EEee-------cCCcCeEEEEEeCC-Cc-EEEEECCCcEEEEeCCCceEE-eecC---------CCceEEEEEeCCCeEE
Q 004329 144 EFWE-------AHNAPIQTVIRIPS-GE-IVSGSSDTTIKLWKGKKCAQT-FVGH---------TDTVRGLSVMPGVGII 204 (760)
Q Consensus 144 ~~~~-------~~~~~v~~v~~~~~-~~-l~tgs~dg~i~iwd~~~~~~~-~~~h---------~~~V~~l~~~~~~~l~ 204 (760)
.... .+...+.++++.|. ++ ++.....+.+..+|....... +.-. -.....|++.+++.++
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 2221 12345788999996 44 455666778888885543332 2211 1356899999988877
Q ss_pred EEeCCCeEEEEe
Q 004329 205 SASHDCTIRLWA 216 (760)
Q Consensus 205 s~s~dg~I~iwd 216 (760)
..++-..++.+.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 778877666665
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.10 E-value=0.087 Score=56.83 Aligned_cols=223 Identities=9% Similarity=-0.045 Sum_probs=130.7
Q ss_pred CeEEEEEeCC--CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCC----e-EEEEE
Q 004329 67 FVGPLAWISP--NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDS----T-LKRWR 138 (760)
Q Consensus 67 ~V~~l~~~~~--~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg----~-v~vwd 138 (760)
....++|.|+ .. .|+.+...+.|+.+|..+++.... ........+++++ ++.++.+...+ . +...+
T Consensus 140 ~P~gvavd~~s~~g-----~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-----DLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTC-----EEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCC-----EEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence 4568888874 22 366665558999999987765543 3345567888887 33366655432 1 22222
Q ss_pred CC-cee--EEeecCCcCeEEEEEeC-CCcEEEEE-CCCcEEEEeCC-Cce-EEeec--CCCceEEEEEeCCCe-EE-EEe
Q 004329 139 KG-KLV--EFWEAHNAPIQTVIRIP-SGEIVSGS-SDTTIKLWKGK-KCA-QTFVG--HTDTVRGLSVMPGVG-II-SAS 207 (760)
Q Consensus 139 ~~-~~~--~~~~~~~~~v~~v~~~~-~~~l~tgs-~dg~i~iwd~~-~~~-~~~~~--h~~~V~~l~~~~~~~-l~-s~s 207 (760)
.. ... ..+. .......+++.+ ++.++.+. .++.|+.+|.. ... ..+.. ....-..++++|++. ++ +-.
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 21 110 1111 223345678888 67766554 56789999865 222 22211 122334799999765 44 445
Q ss_pred CCCeEEEEecCC--ce---EEEeecC---------------CCcEEEEEE---------eCCC-eEEEEeCCCcEEEEe-
Q 004329 208 HDCTIRLWALTG--QV---LMEMVGH---------------TAIVYSIDS---------HASG-LIVSGSEDRFAKIWK- 256 (760)
Q Consensus 208 ~dg~I~iwd~~~--~~---~~~~~~h---------------~~~v~~v~~---------~p~~-~l~s~s~Dg~I~iwd- 256 (760)
..+.|+.++.++ .. ...+.+. -.....+++ .+++ ++++-...+.|+.++
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 578899988642 11 1222221 124677888 6666 666666778899998
Q ss_pred CCceEEEEec------------------CCcEEEEEEc-cCCcEEEEEc-CCcEEEEeCC
Q 004329 257 DGVCVQSIEH------------------PGCVWDAKFL-ENGDIVTACS-DGVTRIWTVH 296 (760)
Q Consensus 257 ~~~~~~~~~~------------------~~~v~~v~~~-~~g~lvt~~~-dg~I~vw~~~ 296 (760)
.+........ -...+.+++. ++|.++.+.. ++.|+.++++
T Consensus 373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 5543333321 0237889999 6777555554 6788887764
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.08 E-value=0.13 Score=53.75 Aligned_cols=106 Identities=9% Similarity=0.032 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC-C-----Ce
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM-D-----TM 93 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~-d-----g~ 93 (760)
..-.+++|.|+|.++.+..+|.|++++ . +....................++|+|+-.. ++.|+.+.. . +.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~--~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQ--EPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTT--SCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCC--CCEEEEEEecCCCCCccE
Confidence 456799999999988888889999998 3 331111101111223457889999998110 113444433 2 67
Q ss_pred EEEEECCCCc-----eE-EEEe---CCCccEEEEEec-CCeEEEEE
Q 004329 94 VLVWDLGSGE-----KV-QTLQ---GHKLQVTGVTLD-NEDIVSSS 129 (760)
Q Consensus 94 I~vwd~~~~~-----~~-~~l~---~h~~~V~~l~~~-~~~l~sgs 129 (760)
|..|+...+. .+ ..+. +.......+.|+ ++.|+.+.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 8888876432 11 1133 111223567776 45555554
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.08 E-value=0.42 Score=50.81 Aligned_cols=216 Identities=9% Similarity=-0.085 Sum_probs=130.8
Q ss_pred CCCCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEE
Q 004329 18 HEDDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVL 95 (760)
Q Consensus 18 H~~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~ 95 (760)
.-..+..++|++. +. +++-...+.|+.+++..... .................+++.+.+.. +.++-...+.|.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~p~glavD~~~~~----lY~~d~~~~~I~ 184 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVS 184 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETTTTE----EEEEETTTTEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-CCcceEEEeCCCCCcccEEEEecCCc----eEEEECCCCeEE
Confidence 3456789999964 55 55555678899998863210 00112223334456788998875542 355556678999
Q ss_pred EEECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC--CeEEEEECCc-eeEEe-ecCCcCeEEEEEeCCC-cEEEE-
Q 004329 96 VWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD--STLKRWRKGK-LVEFW-EAHNAPIQTVIRIPSG-EIVSG- 167 (760)
Q Consensus 96 vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--g~v~vwd~~~-~~~~~-~~~~~~v~~v~~~~~~-~l~tg- 167 (760)
+.+++.......+...-.....|+++ ++.++...+. +.|...+... ....+ ...-.....+++.+++ +++.+
T Consensus 185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 99987655444444444557888886 5666666643 6677777642 22232 2333567889999764 45444
Q ss_pred ECCCcEEEEeCCC-ceEEeec---CCCceEEEEEeCCCeEEEEeCCCeEEEEe-cCCceEEEeecCCCcEEEEEEe
Q 004329 168 SSDTTIKLWKGKK-CAQTFVG---HTDTVRGLSVMPGVGIISASHDCTIRLWA-LTGQVLMEMVGHTAIVYSIDSH 238 (760)
Q Consensus 168 s~dg~i~iwd~~~-~~~~~~~---h~~~V~~l~~~~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~v~~v~~~ 238 (760)
+..+.|..+|... ..+.+.. .-....++++..+..+++-...+.|..+| .+|+.+..+........++.+.
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 4567898888543 2233322 23456678876454466777778888888 6777666666544555555543
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.91 E-value=0.15 Score=54.82 Aligned_cols=222 Identities=9% Similarity=0.041 Sum_probs=125.0
Q ss_pred CEEEEEEcCC---CeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC-----
Q 004329 21 DVRGICVCDN---VGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT----- 92 (760)
Q Consensus 21 ~V~~v~~~~~---~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg----- 92 (760)
....+++.++ +.|..+...+.|+.++..++. ...+........++++.+++. |+.+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~------v~~~~~~~~~P~giavd~dG~------lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY------VDIKTTNIGQCADVNFTLNGD------MVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE------EEEECCCCSCEEEEEECTTCC------EEEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE------EEEeecCCCCccEEEECCCCC------EEEEcCCCCcccc
Confidence 4568999984 667666655899999986553 223333456688999999987 44444321
Q ss_pred eEEEEECCCCce-EEEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEECC-cee-EEe-ec-CCcCeEEEEEeCCCc-
Q 004329 93 MVLVWDLGSGEK-VQTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKG-KLV-EFW-EA-HNAPIQTVIRIPSGE- 163 (760)
Q Consensus 93 ~I~vwd~~~~~~-~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~-~~~-~~~-~~-~~~~v~~v~~~~~~~- 163 (760)
.+...+...+.. ...+. .-.....++++ ++.++.+. .++.|+.++.. ... ..+ .. ....-..++++|++.
T Consensus 208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 233333322211 01111 12223445565 45555444 56788888875 222 222 21 122234699999987
Q ss_pred EE-EEECCCcEEEEeCCC----c--eEEeecC---------------CCceEEEEE---------eCCCeEEEE-eCCCe
Q 004329 164 IV-SGSSDTTIKLWKGKK----C--AQTFVGH---------------TDTVRGLSV---------MPGVGIISA-SHDCT 211 (760)
Q Consensus 164 l~-tgs~dg~i~iwd~~~----~--~~~~~~h---------------~~~V~~l~~---------~~~~~l~s~-s~dg~ 211 (760)
++ +-...+.|+.++... . ...+.+. -.....+++ .+++.++.+ ...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 54 444567898877431 1 1222221 123667888 566665444 45678
Q ss_pred EEEEecCCceEEEeecC------------------CCcEEEEEEe-CCC-eEEEEeCCCcEEEEe
Q 004329 212 IRLWALTGQVLMEMVGH------------------TAIVYSIDSH-ASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 212 I~iwd~~~~~~~~~~~h------------------~~~v~~v~~~-p~~-~l~s~s~Dg~I~iwd 256 (760)
|+.++.+|. +.++.+. -.....|++. +++ ++++-...+.|+.++
T Consensus 367 I~~~~~~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 367 VRVLTPEGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEECTTSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEECCCCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 999997774 3344332 1236778888 566 555555566677654
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.90 E-value=0.1 Score=60.83 Aligned_cols=226 Identities=10% Similarity=0.062 Sum_probs=123.1
Q ss_pred CeEEEEEe-CCCCCCCCcEEEEEeCCC----eEEEEECCCC-ceEE-EEeCCCccEEEEEec--CCeEEEEECC-----C
Q 004329 67 FVGPLAWI-SPNEEFPEGGLVSGGMDT----MVLVWDLGSG-EKVQ-TLQGHKLQVTGVTLD--NEDIVSSSVD-----S 132 (760)
Q Consensus 67 ~V~~l~~~-~~~~~~~~~~l~sgs~dg----~I~vwd~~~~-~~~~-~l~~h~~~V~~l~~~--~~~l~sgs~d-----g 132 (760)
.+...+|+ |+++. +.++.+.+| .|+++|+.++ +.+. .+. .....+.|+ ++.|+....| .
T Consensus 175 ~~~~~~~S~PDG~~----lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPPEHDL----VAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTTTTCE----EEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred EEeeeEecCCCCCE----EEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCC
Confidence 67889999 99983 233434333 4999999988 6321 111 112356676 4466666654 2
Q ss_pred eEEEEECCce----eEEee-cCCcCeEEEEEeCCCc-EE-EEEC--CCcEEEEeCCCc---e--EEee-cCCCceEEEEE
Q 004329 133 TLKRWRKGKL----VEFWE-AHNAPIQTVIRIPSGE-IV-SGSS--DTTIKLWKGKKC---A--QTFV-GHTDTVRGLSV 197 (760)
Q Consensus 133 ~v~vwd~~~~----~~~~~-~~~~~v~~v~~~~~~~-l~-tgs~--dg~i~iwd~~~~---~--~~~~-~h~~~V~~l~~ 197 (760)
.|..++.+.. ...+. ........+.++|+|+ ++ +... ...|+++|.... . +.+. .......++.|
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 4667777532 23333 2233456789999998 43 3322 345777786532 2 3333 34456667776
Q ss_pred eCCCeEEEEeCC-----CeEEEEecCC-ceEEE-eecCCC--cEEEEEEeCCCeEEEEeCCCcEEEE--eC--------C
Q 004329 198 MPGVGIISASHD-----CTIRLWALTG-QVLME-MVGHTA--IVYSIDSHASGLIVSGSEDRFAKIW--KD--------G 258 (760)
Q Consensus 198 ~~~~~l~s~s~d-----g~I~iwd~~~-~~~~~-~~~h~~--~v~~v~~~p~~~l~s~s~Dg~I~iw--d~--------~ 258 (760)
+.++.|+..++. ..|..+|+.. ..... +..|.. .+..+.+..+.++++...++..++| +. +
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~ 407 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKA 407 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccC
Confidence 667765544433 2566677653 23233 344443 4455666533377777888876555 42 2
Q ss_pred ce-EEEEecCCc--EEEEEE----ccCCc-E-EEEEcC---CcEEEEeCCCCe
Q 004329 259 VC-VQSIEHPGC--VWDAKF----LENGD-I-VTACSD---GVTRIWTVHSDK 299 (760)
Q Consensus 259 ~~-~~~~~~~~~--v~~v~~----~~~g~-l-vt~~~d---g~I~vw~~~~~~ 299 (760)
.. ...+..+.. +..+.+ ++++. + ++.++. +.+..+|+.+++
T Consensus 408 g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 408 GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22 445544432 334433 34555 3 443332 466777776654
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.3 Score=52.49 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=125.2
Q ss_pred CEEEEEEcC--CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC-CC----e
Q 004329 21 DVRGICVCD--NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM-DT----M 93 (760)
Q Consensus 21 ~V~~v~~~~--~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~-dg----~ 93 (760)
....++++| ++.|..+...+.|+.+|+..+. ...+.........++|.+++. .|+.+.. ++ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~------v~~~~~~~~~P~~ia~d~~G~-----~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY------VSTVYSGLSKVRTICWTHEAD-----SMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE------EEEEECCCSCEEEEEECTTSS-----EEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE------EEEEecCCCCcceEEEeCCCC-----EEEEEeCCCCcccce
Confidence 456889997 3557777666889999987443 223333456688999999887 3555443 22 3
Q ss_pred EEEEECCCCceE--EEEeCCCccEEEEEec--CCeEEEEE-CCCeEEEEECCc-ee-EEeec-CCcCeEEEEEeCCCc-E
Q 004329 94 VLVWDLGSGEKV--QTLQGHKLQVTGVTLD--NEDIVSSS-VDSTLKRWRKGK-LV-EFWEA-HNAPIQTVIRIPSGE-I 164 (760)
Q Consensus 94 I~vwd~~~~~~~--~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~~-~~-~~~~~-~~~~v~~v~~~~~~~-l 164 (760)
+..++.. +... ..+.. ......++++ ++.++.+. .++.|..++... .. ..... .......++++|++. +
T Consensus 207 v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 207 NYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 4444432 3221 22221 2233455665 45555544 667899998753 22 22221 223467899999988 5
Q ss_pred E-EEECCCcEEEEeCCCc------eEEeecC---------------CCceE-EEEEe--------CCCeEEEE-eCCCeE
Q 004329 165 V-SGSSDTTIKLWKGKKC------AQTFVGH---------------TDTVR-GLSVM--------PGVGIISA-SHDCTI 212 (760)
Q Consensus 165 ~-tgs~dg~i~iwd~~~~------~~~~~~h---------------~~~V~-~l~~~--------~~~~l~s~-s~dg~I 212 (760)
+ +-...+.|..++.... ...+.+. -.... .+++. +++.++.+ ...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 4 4446778888863311 1222221 01123 55554 23454444 456788
Q ss_pred EEEecCCceEEEeecC------------------CCcEEEEEEeC-CC-eEEEEeCCCcEEEEe
Q 004329 213 RLWALTGQVLMEMVGH------------------TAIVYSIDSHA-SG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 213 ~iwd~~~~~~~~~~~h------------------~~~v~~v~~~p-~~-~l~s~s~Dg~I~iwd 256 (760)
+.++.+|.. ..+.+. -.....+++.| ++ ++++-...+.|+.++
T Consensus 365 ~~i~~~G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 365 RILTPQGRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EEECTTSEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 888876643 333322 12578899998 46 555555666777665
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.79 E-value=0.22 Score=50.82 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=118.3
Q ss_pred EEEEEeC-CCcEEEEE-CCCcEEEEeCCCc-eEEe-ecC-------CCceEEEEE---eCCCeEEEEeC-----------
Q 004329 154 QTVIRIP-SGEIVSGS-SDTTIKLWKGKKC-AQTF-VGH-------TDTVRGLSV---MPGVGIISASH----------- 208 (760)
Q Consensus 154 ~~v~~~~-~~~l~tgs-~dg~i~iwd~~~~-~~~~-~~h-------~~~V~~l~~---~~~~~l~s~s~----------- 208 (760)
.++.|.+ ++.++.++ ..++|..||.... .... ..+ ...+..|.+ .|+++++.+..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3667776 45566666 6888988886532 2222 111 113578999 57777544333
Q ss_pred ---CCeEEEEecC----CceEEEee--c-----------CCCcEEEEEEeCCC-eEEEEeCC-CcEEEEe-CCceEEEEe
Q 004329 209 ---DCTIRLWALT----GQVLMEMV--G-----------HTAIVYSIDSHASG-LIVSGSED-RFAKIWK-DGVCVQSIE 265 (760)
Q Consensus 209 ---dg~I~iwd~~----~~~~~~~~--~-----------h~~~v~~v~~~p~~-~l~s~s~D-g~I~iwd-~~~~~~~~~ 265 (760)
+..+..+|+. ++.+.... . -......++..++| ..++++.. +.|...+ .++.+..+.
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA 175 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence 6789999987 66655443 1 11358899999999 77777777 8877777 555444332
Q ss_pred --cC-----CcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhhhhhhhcccceEEeccccCceeeecCCCCcee
Q 004329 266 --HP-----GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL 337 (760)
Q Consensus 266 --~~-----~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l 337 (760)
.+ ...+.++++|+|. |++....|.+..+|+.... . ..+.....|.. ..+.+.+.+
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv--~-------------~~v~~~~~G~~--~~~~~~dgi 238 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY--A-------------WPEPVKINGDF--GTLSGTEKI 238 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS--C-------------CCEECEESSCC--CCCTTEEEE
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc--c-------------eeecccccCCc--ccccCcccc
Confidence 11 1367999999998 6666669999999987210 0 00000000100 133444554
Q ss_pred eccCCCcceEEEEeeCCceEEEEEeccccceeeccce
Q 004329 338 QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 374 (760)
Q Consensus 338 ~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~W~~~g~~ 374 (760)
++-..+|.+.++.++..+.. +.....+ |...+..
T Consensus 239 -lp~~~~G~vllV~~~~~~~~-~l~S~Dg-W~sa~~~ 272 (334)
T 2p9w_A 239 -VTVPVGNESVLVGARAPYAI-SFRSWDN-WKSANIK 272 (334)
T ss_dssp -EEEEETTEEEEEEEETTEEE-EEECSST-TSEEEEE
T ss_pred -cccccCCEEEEEEcCCCCEE-EEECCCC-cceeEEe
Confidence 44456777766766544443 3333344 8876544
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.78 E-value=1.1 Score=51.95 Aligned_cols=214 Identities=13% Similarity=0.023 Sum_probs=120.2
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCC----ceEEEE
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSG----EKVQTL 108 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l 108 (760)
++.-+....|+..++.... ...+......+..++|.+.... ++++-...+.|+.+++... .....+
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~------~~~l~~~~~~~~gl~~d~~~~~----lY~sD~~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSE------YTSLIPNLRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp EEEEECBSSEEEECTTSCC------CEEEECSCSSEEEEEEETTTTE----EEEEETTTTEEEEEEC--------CEEEE
T ss_pred ccccccccceeEeeccCCc------ceeeecCCCceEEEeecccCCe----eEEeeccceeEEEEeccCCCCCcceeEEE
Confidence 3334445678888887443 1223334566789999886552 3455566788999998753 223333
Q ss_pred eCCCccEEEEEec--CCe-EEEEECCCeEEEEECC-ceeEEe-ecCCcCeEEEEEeCC-CcEEEEEC-C-CcEEEEeCCC
Q 004329 109 QGHKLQVTGVTLD--NED-IVSSSVDSTLKRWRKG-KLVEFW-EAHNAPIQTVIRIPS-GEIVSGSS-D-TTIKLWKGKK 180 (760)
Q Consensus 109 ~~h~~~V~~l~~~--~~~-l~sgs~dg~v~vwd~~-~~~~~~-~~~~~~v~~v~~~~~-~~l~tgs~-d-g~i~iwd~~~ 180 (760)
.........|+++ ++. +++-...+.|.+.+.. .....+ .........|++.|. +.|+.... . +.|...++..
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 3333445566665 545 4455567788888875 222232 233445778899886 55544432 2 5677777554
Q ss_pred ce-EEee-cCCCceEEEEEeC-CCeEEEE-eCCCeEEEEecCCceEEEeec---CCCcEEEEEEeCCCeEEEEeCCCcEE
Q 004329 181 CA-QTFV-GHTDTVRGLSVMP-GVGIISA-SHDCTIRLWALTGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAK 253 (760)
Q Consensus 181 ~~-~~~~-~h~~~V~~l~~~~-~~~l~s~-s~dg~I~iwd~~~~~~~~~~~---h~~~v~~v~~~p~~~l~s~s~Dg~I~ 253 (760)
.. ..+. ..-...+.|++.+ +++|+.+ .....|...++.|.....+.. .-....+|++..+.++++-...+.|.
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 626 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEE
Confidence 33 2332 2335678888886 4554444 455678888887765555432 12344556554433444444445555
Q ss_pred EEe
Q 004329 254 IWK 256 (760)
Q Consensus 254 iwd 256 (760)
..+
T Consensus 627 ~~d 629 (791)
T 3m0c_C 627 SAN 629 (791)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 296
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.74 E-value=0.036 Score=63.55 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=118.0
Q ss_pred cccCCC--ceEeEEec-cCCCCEEEEEEcCCCe-EEEEE-CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCC
Q 004329 3 DIDFKE--YQLSSELR-GHEDDVRGICVCDNVG-IATSS-RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPN 77 (760)
Q Consensus 3 ~~d~~~--~~l~~~l~-gH~~~V~~v~~~~~~~-l~tgs-~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 77 (760)
.||..+ ++....+. .+.....++++..+++ ++.|+ .++.+.+||..+.. +.....+..... -.+++..+++
T Consensus 223 ~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~---W~~~~~~~~~R~-~~s~~~~~dg 298 (656)
T 1k3i_A 223 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS---WIPGPDMQVARG-YQSSATMSDG 298 (656)
T ss_dssp EECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE---EEECCCCSSCCS-SCEEEECTTS
T ss_pred EEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc---eeECCCCCcccc-ccceEEecCC
Confidence 345443 33333442 2334444577778888 77777 45689999987553 433332222222 2344555666
Q ss_pred CCCCCcEEEEEe-CC-----CeEEEEECCCCceEEEE----eC-CCccEEEEE-ecCCeEEEEECCC---------eEEE
Q 004329 78 EEFPEGGLVSGG-MD-----TMVLVWDLGSGEKVQTL----QG-HKLQVTGVT-LDNEDIVSSSVDS---------TLKR 136 (760)
Q Consensus 78 ~~~~~~~l~sgs-~d-----g~I~vwd~~~~~~~~~l----~~-h~~~V~~l~-~~~~~l~sgs~dg---------~v~v 136 (760)
. +++.|+ .+ ..+.+||..+++....- .. ....-.++. .++..++.|+.+| .+..
T Consensus 299 ~-----iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~ 373 (656)
T 1k3i_A 299 R-----VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNW 373 (656)
T ss_dssp C-----EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEE
T ss_pred e-----EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceee
Confidence 5 567777 34 56999999877643320 00 000000111 1233345554443 4667
Q ss_pred EECCcee--EEeecCC---------cCeEEEEEeC-CCc-EEEEECCC-----------cEEEEeCCCceEE-ee---cC
Q 004329 137 WRKGKLV--EFWEAHN---------APIQTVIRIP-SGE-IVSGSSDT-----------TIKLWKGKKCAQT-FV---GH 188 (760)
Q Consensus 137 wd~~~~~--~~~~~~~---------~~v~~v~~~~-~~~-l~tgs~dg-----------~i~iwd~~~~~~~-~~---~h 188 (760)
||..... .....+. ..-.++.+.. +++ ++.|+.++ .+.+||.....-. .. .+
T Consensus 374 yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp 453 (656)
T 1k3i_A 374 YYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 453 (656)
T ss_dssp EECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS
T ss_pred eecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC
Confidence 7764221 1111111 1223444433 566 45666432 5777875543322 21 12
Q ss_pred CCce-EEEEEeCCCe-EEEEeCC-----------CeEEEEecCCceEEEeec---CCCcEEEEEEeCCC-eEEEEeC
Q 004329 189 TDTV-RGLSVMPGVG-IISASHD-----------CTIRLWALTGQVLMEMVG---HTAIVYSIDSHASG-LIVSGSE 248 (760)
Q Consensus 189 ~~~V-~~l~~~~~~~-l~s~s~d-----------g~I~iwd~~~~~~~~~~~---h~~~v~~v~~~p~~-~l~s~s~ 248 (760)
.... .+.+..|+++ ++.|+.+ ..+.+||.....-..+.. ......+..+.|++ .++.||.
T Consensus 454 ~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 454 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2222 3445666666 6677654 468999975544333321 11222344556888 7777774
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.70 E-value=1.9 Score=52.41 Aligned_cols=272 Identities=14% Similarity=0.106 Sum_probs=141.5
Q ss_pred CCCEEEEEEcCC------Ce-EEEEEC-CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 19 EDDVRGICVCDN------VG-IATSSR-DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 19 ~~~V~~v~~~~~------~~-l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
.+.|.|+++.+. +. ++.|.. |++++|+++.+-+ ......+. ......++.+..-+. ..++..|-.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~---~~~~~~L~-~~~~p~si~l~~~~~---~~~L~igl~ 625 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE---LLHKEMLG-GEIIPRSILMTTFES---SHYLLCALG 625 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC---EEEEEECC-SSCCEEEEEEEEETT---EEEEEEEET
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC---eEEEEECC-CCCCCcEEEEEEeCC---CcEEEEEeC
Confidence 568999998752 23 888886 9999999997432 11111221 123444554443222 126899999
Q ss_pred CCeEEEEEC--CCCceEEE---EeCCCccEEEEEe--cCCeEEEEECCCeEEEEECCceeEEeecCCcCeEEE-EEeCCC
Q 004329 91 DTMVLVWDL--GSGEKVQT---LQGHKLQVTGVTL--DNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTV-IRIPSG 162 (760)
Q Consensus 91 dg~I~vwd~--~~~~~~~~---l~~h~~~V~~l~~--~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v-~~~~~~ 162 (760)
||.+.-+.+ .+|+.... +-| ..++.-..+ .++.-+.+..+....++...............+.++ .|+...
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSS
T ss_pred CCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCccc
Confidence 999865554 45544322 223 334433333 244433333344444443332222222222334333 343322
Q ss_pred --c-EEEEECCCcEEEEeCCC---ceEEeecCCCceEEEEEeCCCe-EEEEeCC--------------------------
Q 004329 163 --E-IVSGSSDTTIKLWKGKK---CAQTFVGHTDTVRGLSVMPGVG-IISASHD-------------------------- 209 (760)
Q Consensus 163 --~-l~tgs~dg~i~iwd~~~---~~~~~~~h~~~V~~l~~~~~~~-l~s~s~d-------------------------- 209 (760)
. ++ +..++.+++....+ ....-..-...++.++++|... ++.+..+
T Consensus 705 ~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 705 YPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp STTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 2 44 44456688886432 1111112345678888888444 3322211
Q ss_pred -----------------------CeEEEEec-CCceEEEee-cCCCcEEEEEE---eCC-C-eEEEEe----------CC
Q 004329 210 -----------------------CTIRLWAL-TGQVLMEMV-GHTAIVYSIDS---HAS-G-LIVSGS----------ED 249 (760)
Q Consensus 210 -----------------------g~I~iwd~-~~~~~~~~~-~h~~~v~~v~~---~p~-~-~l~s~s----------~D 249 (760)
+.|++.|- +.+.+..+. .....+.+++. ..+ . +++.|+ ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 23555553 334433333 22334555553 222 2 777776 35
Q ss_pred CcEEEEe--CCce--EEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCeee
Q 004329 250 RFAKIWK--DGVC--VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 250 g~I~iwd--~~~~--~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~ 301 (760)
|.|++|+ .++. +......++|++++-. +|++++| -...|++|++...+.+
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~-ig~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLAS-INSTVRLYEWTTEKEL 917 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEE-ETTEEEEEEECTTSCE
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEE-cCCEEEEEECCCCceE
Confidence 7899998 3322 2223367899998854 4555544 4689999999876543
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.60 E-value=0.97 Score=52.43 Aligned_cols=211 Identities=11% Similarity=-0.008 Sum_probs=129.9
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCccEEEEEec--CCeEE-EEECCCeEEEEECCc------eeEEeecCCcCeEEEEEe
Q 004329 89 GMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD--NEDIV-SSSVDSTLKRWRKGK------LVEFWEAHNAPIQTVIRI 159 (760)
Q Consensus 89 s~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~-sgs~dg~v~vwd~~~------~~~~~~~~~~~v~~v~~~ 159 (760)
+....|+..++.......... ....+..++++ ++.|+ +-...+.|+.+++.. ....+.........+++.
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred ccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 344668888887665544443 44567788886 45554 444567788887642 122333234456678888
Q ss_pred CCC-c-EEEEECCCcEEEEeCCCc-eEEee-cCCCceEEEEEeCC-CeEEEEeC--CCeEEEEecCCceEEEeecC-CCc
Q 004329 160 PSG-E-IVSGSSDTTIKLWKGKKC-AQTFV-GHTDTVRGLSVMPG-VGIISASH--DCTIRLWALTGQVLMEMVGH-TAI 231 (760)
Q Consensus 160 ~~~-~-l~tgs~dg~i~iwd~~~~-~~~~~-~h~~~V~~l~~~~~-~~l~s~s~--dg~I~iwd~~~~~~~~~~~h-~~~ 231 (760)
+.+ . +++-...+.|.+.+.... ...+. ..-...+.|++.|. +.|+.+.. .+.|...++.|.....+... -..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 765 4 445566788999986543 33332 34456899999984 56555543 37899999998877666543 367
Q ss_pred EEEEEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEe-c---CCcEEEEEEccCCcE-EEEEcCCcEEEEeCCCCeee
Q 004329 232 VYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-H---PGCVWDAKFLENGDI-VTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 232 v~~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~-~---~~~v~~v~~~~~g~l-vt~~~dg~I~vw~~~~~~~~ 301 (760)
...|++.+.+ ++++-...+.|...+ .+.....+. . -....+|++..+ .| ++-...+.|...+..+++..
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence 8999999765 444545667788888 554444442 1 124556666433 44 44444677877776666543
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.58 E-value=1.4 Score=49.66 Aligned_cols=212 Identities=9% Similarity=-0.001 Sum_probs=132.7
Q ss_pred ECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEE
Q 004329 37 SRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVT 116 (760)
Q Consensus 37 s~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~ 116 (760)
+..+.|+..++++... ... .....-..+..++|.+.... ++++-..++.|+.+++........+........
T Consensus 12 s~~~~I~~i~l~~~~~---~~~-~~~~~~~~~~~l~~d~~~~~----lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 12 SRRADIRRISLETNNN---NVA-IPLTGVKEASALDFDVTDNR----IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EETTEEEEEESSCTTC---EEE-CCCCSCSCEEEEEEETTTTE----EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EeCCcEEEEECCCCCc---ceE-EEcCCCCceEEEEEECCCCE----EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 4567899999985431 111 11122356789999987663 345556788999999876544444443323455
Q ss_pred EEEec--CCeE-EEEECCCeEEEEECC-ceeEEe-ecCCcCeEEEEEeC-CCcEEEEEC--CCcEEEEeCCC-ceEEeec
Q 004329 117 GVTLD--NEDI-VSSSVDSTLKRWRKG-KLVEFW-EAHNAPIQTVIRIP-SGEIVSGSS--DTTIKLWKGKK-CAQTFVG 187 (760)
Q Consensus 117 ~l~~~--~~~l-~sgs~dg~v~vwd~~-~~~~~~-~~~~~~v~~v~~~~-~~~l~tgs~--dg~i~iwd~~~-~~~~~~~ 187 (760)
.++++ ++.| ++-...+.|.+.+.. .....+ ...-.....+++.| .|.++.... .+.|...+... ....+..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~ 163 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP 163 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence 66664 5555 444556788888874 222222 23445678999998 466555442 45677776443 3333334
Q ss_pred CCCceEEEEEeCC-CeE-EEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe
Q 004329 188 HTDTVRGLSVMPG-VGI-ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 256 (760)
Q Consensus 188 h~~~V~~l~~~~~-~~l-~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd 256 (760)
.-.....|++.++ +++ ++-...+.|..+|+.|.....+........++++..+..+++-...+.|...|
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERAN 234 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEE
Confidence 4567889999984 554 44456788999998776554454455566788887644666666678888888
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.56 E-value=0.17 Score=58.94 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=103.2
Q ss_pred CEEEEEEc-CCCe-EEEE-ECCC----eEEEEeCCCC-CCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC-
Q 004329 21 DVRGICVC-DNVG-IATS-SRDR----TVRFWSLDPS-DKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD- 91 (760)
Q Consensus 21 ~V~~v~~~-~~~~-l~tg-s~Dg----~i~iWd~~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d- 91 (760)
.+...+|+ |||+ |+-+ +.+| +|+++|+.++ +... ..+. .....++|+|+++. |+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~~~---~~~~~~~WspDg~~-----l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DKVS---GTNGEIVWGPDHTS-----LFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CCEE---EECSCCEECSSTTE-----EEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cccc---CceeeEEEecCCCE-----EEEEEECC
Confidence 67889999 9998 5533 3333 5999999877 4211 1111 11346889999873 4444443
Q ss_pred ----CeEEEEECCCCce--EEEEe-CCCccEEEEEec--CCeEEEEEC---CCeEEEEECCce---e--EEe-ecCCcCe
Q 004329 92 ----TMVLVWDLGSGEK--VQTLQ-GHKLQVTGVTLD--NEDIVSSSV---DSTLKRWRKGKL---V--EFW-EAHNAPI 153 (760)
Q Consensus 92 ----g~I~vwd~~~~~~--~~~l~-~h~~~V~~l~~~--~~~l~sgs~---dg~v~vwd~~~~---~--~~~-~~~~~~v 153 (760)
..|+.+++.++.. ...+. .+......+.|+ +++|+..+. ...|.++|.... . ..+ .......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688899987642 23333 223345667776 455555442 234666776432 2 333 3344556
Q ss_pred EEEEEeCCCcEEEEEC-C--C--cEEEEeCCC--ceEE-eecCCC--ceEEEEEeCCCeEEEEeCCCeEEE--Eec
Q 004329 154 QTVIRIPSGEIVSGSS-D--T--TIKLWKGKK--CAQT-FVGHTD--TVRGLSVMPGVGIISASHDCTIRL--WAL 217 (760)
Q Consensus 154 ~~v~~~~~~~l~tgs~-d--g--~i~iwd~~~--~~~~-~~~h~~--~V~~l~~~~~~~l~s~s~dg~I~i--wd~ 217 (760)
+++.|+.++.++..+. + + .|..++... ..+. +..|.. .+..+.+..+..+++...++..++ +++
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 6666665566554433 3 2 566666542 2233 444433 455666653333667777886554 454
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.79 Score=49.74 Aligned_cols=229 Identities=8% Similarity=0.021 Sum_probs=134.1
Q ss_pred eEEEEEeCC-CCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCC---CccEEEEEe-------c--CCeEEEEECCC--
Q 004329 68 VGPLAWISP-NEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGH---KLQVTGVTL-------D--NEDIVSSSVDS-- 132 (760)
Q Consensus 68 V~~l~~~~~-~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h---~~~V~~l~~-------~--~~~l~sgs~dg-- 132 (760)
...|+|.|. ... ++++-...+.|++.|++++......... ......++| + ++.++.+...+
T Consensus 141 p~~la~dp~~~~~----Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 141 NGRLAFDPLNKDH----LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETTEEEE----EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCEEEEccCCCCE----EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 568889884 331 3444444577999999877665544432 235788999 6 55577776654
Q ss_pred -----eEEEEECCc--ee------EEeecCCcCeEEEEEeCC-CcEE-EEECCCcEEEEeCC--------Cce-------
Q 004329 133 -----TLKRWRKGK--LV------EFWEAHNAPIQTVIRIPS-GEIV-SGSSDTTIKLWKGK--------KCA------- 182 (760)
Q Consensus 133 -----~v~vwd~~~--~~------~~~~~~~~~v~~v~~~~~-~~l~-tgs~dg~i~iwd~~--------~~~------- 182 (760)
.+.+++... .. ..+... .....++++|+ +.|+ +-..++.|..+|.. ...
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255554221 11 222221 23446788884 5555 55567789999854 111
Q ss_pred -----EE-ee-cCCCceEEEEEeCCCe--EEEEeCCCeEEEEecCCc--eE---EEeecC---C------------CcEE
Q 004329 183 -----QT-FV-GHTDTVRGLSVMPGVG--IISASHDCTIRLWALTGQ--VL---MEMVGH---T------------AIVY 233 (760)
Q Consensus 183 -----~~-~~-~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~~--~~---~~~~~h---~------------~~v~ 233 (760)
.. +. +.....+.++++|++. +++-+....|+.++..+. .+ ..+.+. . ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 12 21 2234568999999776 444456788998775432 11 223221 1 1244
Q ss_pred -EEEEe-------CCC-eEEEEeCCCcEEEEe-CCceEEEE-ec------------------------CCcEEEEEEccC
Q 004329 234 -SIDSH-------ASG-LIVSGSEDRFAKIWK-DGVCVQSI-EH------------------------PGCVWDAKFLEN 278 (760)
Q Consensus 234 -~v~~~-------p~~-~l~s~s~Dg~I~iwd-~~~~~~~~-~~------------------------~~~v~~v~~~~~ 278 (760)
.++.. +++ ++++-....+|+.++ .+. +.++ .. -...+.|++.++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 456 666667788899998 553 3333 21 024678999996
Q ss_pred -CcEEEEEc-CCcEEEEeCCCCeeec
Q 004329 279 -GDIVTACS-DGVTRIWTVHSDKVAD 302 (760)
Q Consensus 279 -g~lvt~~~-dg~I~vw~~~~~~~~~ 302 (760)
|.|+.+.. +..||.++++......
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCEEEEEeCCCCEEEEEECCCCcccc
Confidence 77655554 7899999988765543
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.39 E-value=1 Score=46.70 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=59.1
Q ss_pred CcEEEEeCCCceEEeecCCCceEEEEEeCCCe--EEEEeCCCeEEEEecC--Cce--EEEeecCCCcEEEEEEeC-CC-e
Q 004329 171 TTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVG--IISASHDCTIRLWALT--GQV--LMEMVGHTAIVYSIDSHA-SG-L 242 (760)
Q Consensus 171 g~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~--l~s~s~dg~I~iwd~~--~~~--~~~~~~h~~~v~~v~~~p-~~-~ 242 (760)
|.+..+|.++. +.+...-...+.++|+|++. +++-+..+.|..|++. +.. ...+ ......-.+++.+ +| +
T Consensus 203 g~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 203 SFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred cEEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 44555555432 23333345678999999875 4455567899999974 322 1122 3356677888888 47 4
Q ss_pred EEEEeCC-CcEEEEe-C---CceEEEEec---CC-cEEEEEEccCCc
Q 004329 243 IVSGSED-RFAKIWK-D---GVCVQSIEH---PG-CVWDAKFLENGD 280 (760)
Q Consensus 243 l~s~s~D-g~I~iwd-~---~~~~~~~~~---~~-~v~~v~~~~~g~ 280 (760)
.+++..+ +.|..|+ . +..+..+.. .. .+..+ |..+|+
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~ 326 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGT 326 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSS
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCC
Confidence 4444434 3444455 2 445555542 22 33333 455666
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.32 E-value=1.2 Score=46.10 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=115.1
Q ss_pred CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce--EEEEe---CCCccEEEEEecCC-----eEEEEECC---
Q 004329 65 TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK--VQTLQ---GHKLQVTGVTLDNE-----DIVSSSVD--- 131 (760)
Q Consensus 65 ~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~---~h~~~V~~l~~~~~-----~l~sgs~d--- 131 (760)
-.....++|.|++. ++.+..+|.|++++ +++. +..+. ........++++++ .++.+...
T Consensus 30 l~~P~~ia~~pdG~------l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 30 LEVPWALAFLPDGG------MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CSCEEEEEECTTSC------EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CCCceEEEEcCCCe------EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 44567999999987 66677789999998 4432 22221 12456788999843 65555432
Q ss_pred ---CeEEEEECCc-----eeEE---ee---cCCcCeEEEEEeCCCcEEEEECC--------------CcEEEEeCCCc--
Q 004329 132 ---STLKRWRKGK-----LVEF---WE---AHNAPIQTVIRIPSGEIVSGSSD--------------TTIKLWKGKKC-- 181 (760)
Q Consensus 132 ---g~v~vwd~~~-----~~~~---~~---~~~~~v~~v~~~~~~~l~tgs~d--------------g~i~iwd~~~~-- 181 (760)
+.|..|+... .... +. ........+++.|+|.++.+..+ |.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 5666675431 1111 22 11123357899999996654322 45666654321
Q ss_pred ------------eEEe-ecCCCceEEEEEeC-CCeEEEEeCCCe---------EEEEecCC-----------------ce
Q 004329 182 ------------AQTF-VGHTDTVRGLSVMP-GVGIISASHDCT---------IRLWALTG-----------------QV 221 (760)
Q Consensus 182 ------------~~~~-~~h~~~V~~l~~~~-~~~l~s~s~dg~---------I~iwd~~~-----------------~~ 221 (760)
...+ .+| .....++|.| ++.++++..... |.+..-.+ .+
T Consensus 182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 1112 222 3366788998 666665544322 33322111 12
Q ss_pred EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---CCc------eEEEEecCCcEEEEEEccCCcEEEEEc
Q 004329 222 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGV------CVQSIEHPGCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 222 ~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---~~~------~~~~~~~~~~v~~v~~~~~g~lvt~~~ 286 (760)
+..+ .+......+++. +| ++++.-..+.|...+ .+. ....+.....+..+++.|||.++.+..
T Consensus 261 ~~~~-~~~~ap~G~~~~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 261 LYFW-PQGFPPGNLAFF-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SEEC-TTCCCEEEEEEE-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred eEec-CCCCCCcceEEE-CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2222 223345677774 45 555555566676665 221 111222335789999999998554443
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.29 E-value=2.1 Score=48.32 Aligned_cols=192 Identities=8% Similarity=-0.092 Sum_probs=119.1
Q ss_pred CCEEEEEEcCC-Ce-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCDN-VG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~~-~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
..+..++|.+. +. +++-..++.|+.++++... ....+.........+++.+.+.. +.++-...+.|.+.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-----~~~v~~~g~~~P~GlAvD~~~~~----LY~tD~~~~~I~v~ 107 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-----LEHVVEFGLDYPEGMAVDWLGKN----LYWADTGTNRIEVS 107 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-----cEEEEeCCCCCcceEEEEeCCCE----EEEEECCCCEEEEE
Confidence 46789999975 45 5666678899999987332 11222222345678888766553 34555667889999
Q ss_pred ECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC--CeEEEEECC-ceeEEeecCCcCeEEEEEeCC-CcEE-EEECC
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD--STLKRWRKG-KLVEFWEAHNAPIQTVIRIPS-GEIV-SGSSD 170 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--g~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~-~~l~-tgs~d 170 (760)
+++.......+...-.....|+++ .+.++...+. +.|...++. .....+...-.....+++.++ ++++ +-...
T Consensus 108 ~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 108 KLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp ETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT
T ss_pred ecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCC
Confidence 987544333333344567888887 5677777653 556666654 333333334456778999986 4454 44556
Q ss_pred CcEEEEeCCC-ceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCc
Q 004329 171 TTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQ 220 (760)
Q Consensus 171 g~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~ 220 (760)
+.|..+|... ..+.+........++++..+..+++-...+.|...|. +++
T Consensus 188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 7888888543 2233444445567888876433556556788888883 443
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.24 E-value=3.3 Score=50.18 Aligned_cols=214 Identities=10% Similarity=0.014 Sum_probs=108.6
Q ss_pred CEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCC-CCCCcEEEEEeC-CCeEEEEE
Q 004329 21 DVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNE-EFPEGGLVSGGM-DTMVLVWD 98 (760)
Q Consensus 21 ~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~~~~~l~sgs~-dg~I~vwd 98 (760)
.|...+.++ ..++.++ ++.+.++.++.++ ...... ..-...|.|+++.+... .....+++.|.. |+++++++
T Consensus 515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~---L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 515 NISVASCNS-SQVVVAV-GRALYYLQIHPQE---LRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCCEEEECS-SEEEEEE-TTEEEEEEEETTE---EEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCc---eeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 455555443 3444444 5788888776432 112222 22356799999876432 111237888986 99999999
Q ss_pred CCCCceEEEEeC-CCccEEEEEe---c-CCeEEEEECCCeEEEEECC----ceeE--EeecCCcCeEEEEEeCCCc-EEE
Q 004329 99 LGSGEKVQTLQG-HKLQVTGVTL---D-NEDIVSSSVDSTLKRWRKG----KLVE--FWEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 99 ~~~~~~~~~l~~-h~~~V~~l~~---~-~~~l~sgs~dg~v~vwd~~----~~~~--~~~~~~~~v~~v~~~~~~~-l~t 166 (760)
+.+.+.+....- ......++.+ . .-++..|-.||.+..+... .... ...-...++.-..+...+. -+.
T Consensus 589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEE
T ss_pred CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEE
Confidence 987766544331 1223444433 2 2348899999998766432 1111 1111234554444444443 333
Q ss_pred EECCCcEEEEeCCCceEEeecCCCceEEEE-EeCC---CeEEEEeCCCeEEEEecCC--ceEEEeecCCCcEEEEEEeCC
Q 004329 167 GSSDTTIKLWKGKKCAQTFVGHTDTVRGLS-VMPG---VGIISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHAS 240 (760)
Q Consensus 167 gs~dg~i~iwd~~~~~~~~~~h~~~V~~l~-~~~~---~~l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~v~~v~~~p~ 240 (760)
++.+....+|..+.....-.-.-..+..++ |+.. +.++.. .++.++|..+.. +.......-...+..++++|.
T Consensus 669 a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~ 747 (1158)
T 3ei3_A 669 ACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV 747 (1158)
T ss_dssp EESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGG
T ss_pred EECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCC
Confidence 333444444443322221111222343333 3321 124433 345688887532 222222233457778888876
Q ss_pred C
Q 004329 241 G 241 (760)
Q Consensus 241 ~ 241 (760)
.
T Consensus 748 ~ 748 (1158)
T 3ei3_A 748 S 748 (1158)
T ss_dssp G
T ss_pred C
Confidence 5
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.23 E-value=1.1 Score=46.00 Aligned_cols=131 Identities=10% Similarity=0.151 Sum_probs=86.7
Q ss_pred EEEEECCCcEEEEeCCC-ceEEeecCCCceEEEEEeCCC----e---EEE--EeC--CCeEEEEecC--CceEEEeec--
Q 004329 164 IVSGSSDTTIKLWKGKK-CAQTFVGHTDTVRGLSVMPGV----G---IIS--ASH--DCTIRLWALT--GQVLMEMVG-- 227 (760)
Q Consensus 164 l~tgs~dg~i~iwd~~~-~~~~~~~h~~~V~~l~~~~~~----~---l~s--~s~--dg~I~iwd~~--~~~~~~~~~-- 227 (760)
++.....+-+.+||+.. .++.+.. +.++.+.+-|+- . ++. .-. +.+|++|+++ ...+..+..
T Consensus 43 ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~ 120 (355)
T 3amr_A 43 LITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPD 120 (355)
T ss_dssp EEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTT
T ss_pred EEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccc
Confidence 55566777899999643 3333322 567777777632 1 333 333 5789999763 344555421
Q ss_pred ----CC-CcEEEEEE--eCC-C--eEEEEeCCCcEEEEe---------CCceEEEEecCCcEEEEEEccCCc-EEEEEcC
Q 004329 228 ----HT-AIVYSIDS--HAS-G--LIVSGSEDRFAKIWK---------DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD 287 (760)
Q Consensus 228 ----h~-~~v~~v~~--~p~-~--~l~s~s~Dg~I~iwd---------~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~d 287 (760)
.. ..++.+|+ +|. + ++++...+|.+..|+ ..+.++++...+.+-.++..+... ++.+-.+
T Consensus 121 ~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 121 HPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp SCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred cCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc
Confidence 22 56777887 664 4 688889999999987 124577788888888899887554 8888888
Q ss_pred CcEEEEeCC
Q 004329 288 GVTRIWTVH 296 (760)
Q Consensus 288 g~I~vw~~~ 296 (760)
..|..++.+
T Consensus 201 ~GIw~~da~ 209 (355)
T 3amr_A 201 EAIWKFSAE 209 (355)
T ss_dssp TEEEEEECS
T ss_pred ceEEEEeCC
Confidence 666666644
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.02 E-value=1.9 Score=45.38 Aligned_cols=227 Identities=9% Similarity=0.153 Sum_probs=148.8
Q ss_pred EEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC---ceeEE
Q 004329 70 PLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG---KLVEF 145 (760)
Q Consensus 70 ~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~---~~~~~ 145 (760)
+.-.+|..+ .++.= ...++.++|+++.+.++...-.. .|.-..|- ++.+... .+..|+.|+.. .+...
T Consensus 70 sAIMnP~~~-----iiALr-ag~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kv 141 (494)
T 1bpo_A 70 SAIMNPASK-----VIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKM 141 (494)
T ss_dssp EEEECSSSS-----CEEEE-ETTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEE
T ss_pred eeeeCCCCc-----EEEEe-cCCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhh
Confidence 344566665 23333 47899999999998888776444 56566664 5555444 45689999874 56777
Q ss_pred eecC----CcCeEEEEEeCCCc--EEEEE------CCCcEEEEeCC-CceEEeecCCCceEEEEEeCCC---e-EEEEeC
Q 004329 146 WEAH----NAPIQTVIRIPSGE--IVSGS------SDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMPGV---G-IISASH 208 (760)
Q Consensus 146 ~~~~----~~~v~~v~~~~~~~--l~tgs------~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~~~---~-l~s~s~ 208 (760)
+..| ...|..-..+++.+ +++|- -.|.+.+|... +..+.+.+|...-..+.+..+. . |+.+..
T Consensus 142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 7766 34566666677766 33332 24678899854 5666788887665555443211 2 333333
Q ss_pred ---CCeEEEEecCCc----e-----EEE-ee---cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCC
Q 004329 209 ---DCTIRLWALTGQ----V-----LME-MV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG 268 (760)
Q Consensus 209 ---dg~I~iwd~~~~----~-----~~~-~~---~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~ 268 (760)
.+.+++-++... . ... +. ...+...++.+++.. .+..-+.-|.|++|| ++.++..-+ ...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC
Confidence 278999987321 1 111 11 224567788888876 888889999999999 788877666 444
Q ss_pred cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechh
Q 004329 269 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 269 ~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
+|...+...... ++.....|.|.--.++....+.-+
T Consensus 302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi 338 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYI 338 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHH
T ss_pred ceEEecccCCCCcEEEEccCceEEEEEEccccchhhh
Confidence 776666555444 888889999998888888776544
No 308
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.87 E-value=0.043 Score=52.33 Aligned_cols=150 Identities=15% Similarity=0.047 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCCC-CccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 680 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~-~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 680 (760)
+..++..+.+ ..+..+.-++++|+|+..+ +..+..+.. ...+..+...+.+.+..+|..++..+.|++.......
T Consensus 56 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 131 (210)
T 4db6_A 56 LPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131 (210)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 4444443332 2445678899999999754 444454443 2244445555566678899999999999985322111
Q ss_pred CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcch-hHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHHHHh
Q 004329 681 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLE-GLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLA 757 (760)
Q Consensus 681 ~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ll 757 (760)
..-.....+..+++++.. .+++.....+.||++|... ++.++.....+.-+.+.++....++++++-+...+.-|
T Consensus 132 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 132 QAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 000112344555566653 4779999999999999983 55554444444434444444455667777776665443
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.84 E-value=0.65 Score=47.31 Aligned_cols=145 Identities=7% Similarity=-0.046 Sum_probs=94.8
Q ss_pred CccEEEEEec--CCeEEEEE-CCCeEEEEECC-ceeEEee-cC-------CcCeEEEEE---eCCCcEEEEEC-------
Q 004329 112 KLQVTGVTLD--NEDIVSSS-VDSTLKRWRKG-KLVEFWE-AH-------NAPIQTVIR---IPSGEIVSGSS------- 169 (760)
Q Consensus 112 ~~~V~~l~~~--~~~l~sgs-~dg~v~vwd~~-~~~~~~~-~~-------~~~v~~v~~---~~~~~l~tgs~------- 169 (760)
..-..++.|+ .+.++.++ ..++|..|+.. ....... .. ...+..+.+ .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3334467786 46676666 78999999875 2222221 11 113578899 57888654333
Q ss_pred -------CCcEEEEeCC-----CceEEee--c-----------CCCceEEEEEeCCCe-EEEEeCC-CeEEEEecCCceE
Q 004329 170 -------DTTIKLWKGK-----KCAQTFV--G-----------HTDTVRGLSVMPGVG-IISASHD-CTIRLWALTGQVL 222 (760)
Q Consensus 170 -------dg~i~iwd~~-----~~~~~~~--~-----------h~~~V~~l~~~~~~~-l~s~s~d-g~I~iwd~~~~~~ 222 (760)
+..+..||+. +...... . -......++..+++. +++++.. +.|...+.+|+.+
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 5778999965 2332221 1 112478899999777 7778888 8988888888755
Q ss_pred EEeecC------CCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 223 MEMVGH------TAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 223 ~~~~~h------~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
..+... ....+.|+++|+| .|++....|.+..+|
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 443311 2236799999999 666665599999999
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.72 E-value=2.3 Score=44.06 Aligned_cols=146 Identities=11% Similarity=-0.019 Sum_probs=78.3
Q ss_pred CCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC----C---
Q 004329 19 EDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM----D--- 91 (760)
Q Consensus 19 ~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~----d--- 91 (760)
-..-.+++|.|+|.|+.+..+|.|++++.. +. ..................|+++|+-.. ++.|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~--~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPK--KSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTT--SCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCc--CCEEEEEEeccCCCCCc
Confidence 345789999999998888888999999732 32 111110111223456889999997210 123544433 3
Q ss_pred -CeEEEEECCCC--c-----eE-EEEeC-CCccEEEEEec-CCeEEEEECC--------------CeEEEEECCce----
Q 004329 92 -TMVLVWDLGSG--E-----KV-QTLQG-HKLQVTGVTLD-NEDIVSSSVD--------------STLKRWRKGKL---- 142 (760)
Q Consensus 92 -g~I~vwd~~~~--~-----~~-~~l~~-h~~~V~~l~~~-~~~l~sgs~d--------------g~v~vwd~~~~---- 142 (760)
+.|..|+.... . .+ ..+.. .......+.|. ++.|+.+..| |.|..++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777877644 1 11 11221 11223467776 4455554322 34555544321
Q ss_pred -----eEE-eecCCcCeEEEEEeC-CCcEEEEEC
Q 004329 143 -----VEF-WEAHNAPIQTVIRIP-SGEIVSGSS 169 (760)
Q Consensus 143 -----~~~-~~~~~~~v~~v~~~~-~~~l~tgs~ 169 (760)
... ..++. ....+++.+ ++.++++..
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 111 12333 345788998 677766554
No 311
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.71 E-value=0.045 Score=53.95 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=87.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccH-HHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWY-SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 680 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~-~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 680 (760)
+..++..+.+ ..+..+..++++|+|+-.+...+ ..+.. ..++..+...+...+..+|..++..+.|++.......
T Consensus 98 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 98 LPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 4444444333 24566888999999999888877 44443 2345555556666678899999999999985321110
Q ss_pred CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHH
Q 004329 681 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 754 (760)
Q Consensus 681 ~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 754 (760)
..-.....+..+++++.. .+++.....+.+|++|+. +++..+.....++-..+-.+....++++++-+..++
T Consensus 174 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred HHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000012234445566653 477899999999999996 444443333333322222222344556666555444
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.67 E-value=2.3 Score=47.86 Aligned_cols=213 Identities=12% Similarity=0.020 Sum_probs=126.3
Q ss_pred EeCCCeEEEEECCCCc-eEEEEeCCCccEEEEEec--CCeEEEEEC-CCeEEEEECCce---eEEeecCCcCeEEEEEeC
Q 004329 88 GGMDTMVLVWDLGSGE-KVQTLQGHKLQVTGVTLD--NEDIVSSSV-DSTLKRWRKGKL---VEFWEAHNAPIQTVIRIP 160 (760)
Q Consensus 88 gs~dg~I~vwd~~~~~-~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~v~vwd~~~~---~~~~~~~~~~v~~v~~~~ 160 (760)
-.....|+..++.... ....+...-.....++++ ++.++.+.. .+.|..++.... ...+...-.....+++.+
T Consensus 14 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp EECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred EeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 3445778888887543 222222334456788886 566665554 577888876432 223333335678899988
Q ss_pred C-CcEE-EEECCCcEEEEeCCCc-eEEee-cCCCceEEEEEeC-CCeEEEEeC--CCeEEEEecCCceEEEeec-CCCcE
Q 004329 161 S-GEIV-SGSSDTTIKLWKGKKC-AQTFV-GHTDTVRGLSVMP-GVGIISASH--DCTIRLWALTGQVLMEMVG-HTAIV 232 (760)
Q Consensus 161 ~-~~l~-tgs~dg~i~iwd~~~~-~~~~~-~h~~~V~~l~~~~-~~~l~s~s~--dg~I~iwd~~~~~~~~~~~-h~~~v 232 (760)
. +.++ +-...+.|.+.+.... .+.+. ..-...+.|++.| ++.++.+.. .+.|...+++|.....+.. .-...
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence 5 4444 5556788999986543 23333 4455678999998 466555543 4678888888876655542 44578
Q ss_pred EEEEEeCCC--eEEEEeCCCcEEEEe-CCceEEEEec--CCcEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeee
Q 004329 233 YSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEH--PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 301 (760)
Q Consensus 233 ~~v~~~p~~--~l~s~s~Dg~I~iwd-~~~~~~~~~~--~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~ 301 (760)
..+++++++ ++++-+..+.|...| .+...+.+.. -....++++..+ . +++-...+.|...|..+++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 999999865 555556677888888 4443333321 112346666655 4 444445788999998777543
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.61 E-value=1.9 Score=44.28 Aligned_cols=134 Identities=10% Similarity=0.175 Sum_probs=85.2
Q ss_pred CCcEEEEeCC---CceEEeec------CC-CceEEEEE--eC-CC--eEEEEeCCCeEEEEec--------CCceEEEee
Q 004329 170 DTTIKLWKGK---KCAQTFVG------HT-DTVRGLSV--MP-GV--GIISASHDCTIRLWAL--------TGQVLMEMV 226 (760)
Q Consensus 170 dg~i~iwd~~---~~~~~~~~------h~-~~V~~l~~--~~-~~--~l~s~s~dg~I~iwd~--------~~~~~~~~~ 226 (760)
+++|++|++. ..+..+.. .. ..+..+|+ +| .+ +++....+|.+..|++ +.+.++++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5788888542 22333311 11 55677887 66 34 3778888999999986 223455554
Q ss_pred cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-C------CceEEEEecC---CcEEEEEE--ccCCc--EEEEE-cCCcE
Q 004329 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D------GVCVQSIEHP---GCVWDAKF--LENGD--IVTAC-SDGVT 290 (760)
Q Consensus 227 ~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-~------~~~~~~~~~~---~~v~~v~~--~~~g~--lvt~~-~dg~I 290 (760)
- .+.+-.+...+.. .|+.+-++.-|..++ . ++.+..+... ..+..++. .++|+ +++++ .+...
T Consensus 178 l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 178 M-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp C-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred C-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 3 4577788888765 999999996655555 1 3455555322 46788887 45555 55555 48899
Q ss_pred EEEeCC-CCeeechh
Q 004329 291 RIWTVH-SDKVADSL 304 (760)
Q Consensus 291 ~vw~~~-~~~~~~~~ 304 (760)
.+|+.. +.+.+..+
T Consensus 257 ~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 257 AIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEESSTTCCEEEEE
T ss_pred EEEECCCCCcEEEEE
Confidence 999996 55555444
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.52 E-value=0.029 Score=64.68 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC----CceEEEEeCCCc
Q 004329 38 RDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS----GEKVQTLQGHKL 113 (760)
Q Consensus 38 ~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~----~~~~~~l~~h~~ 113 (760)
..+.|+..++.+... . .+......+..++|.+.... ++++-...+.|+.+++.. ......+.....
T Consensus 384 ~~~~I~~id~~~~~~-----~-~~~~~~~~p~gla~d~~~~~----Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY-----T-SLIPNLRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp CTTC-CEECTTSCCE-----E-CCSCCCTTCCCCEEETTTTE----EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred CccceEEEeCCCCcc-----e-eeeccCcceEEEccccccCe----EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 345778888764431 1 11122345668889886652 233434567899999875 222222221112
Q ss_pred cEEEEEec--CCeE-EEEECCCeEEEEECCce-eEEe-ecCCcCeEEEEEeCC-CcEEEEE-CC-CcEEEEeCCCc-eEE
Q 004329 114 QVTGVTLD--NEDI-VSSSVDSTLKRWRKGKL-VEFW-EAHNAPIQTVIRIPS-GEIVSGS-SD-TTIKLWKGKKC-AQT 184 (760)
Q Consensus 114 ~V~~l~~~--~~~l-~sgs~dg~v~vwd~~~~-~~~~-~~~~~~v~~v~~~~~-~~l~tgs-~d-g~i~iwd~~~~-~~~ 184 (760)
....|+++ ++.| ++-...+.|.+++.... ...+ .........+++.|. +.++... .. +.|..++.... ...
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 533 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence 33456664 4454 44456778988887532 2222 222344567888885 4444333 22 67777764432 222
Q ss_pred ee-cCCCceEEEEEeCC-Ce-EEEEeCCCeEEEEecCCceEEEeec---CCCcEEEEEEeCCCeEEEEeCCCcEEEEe--
Q 004329 185 FV-GHTDTVRGLSVMPG-VG-IISASHDCTIRLWALTGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAKIWK-- 256 (760)
Q Consensus 185 ~~-~h~~~V~~l~~~~~-~~-l~s~s~dg~I~iwd~~~~~~~~~~~---h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd-- 256 (760)
+. ..-...+.|+++|+ ++ +++-+..+.|..+++.+.....+.. ......+|++..+.++++....+.|..++
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence 22 22345678999984 44 4555567889999988765555432 12334456665555566666677888887
Q ss_pred CCceEEEEe
Q 004329 257 DGVCVQSIE 265 (760)
Q Consensus 257 ~~~~~~~~~ 265 (760)
+++.+..+.
T Consensus 614 ~G~~~~~i~ 622 (699)
T 1n7d_A 614 TGSDVNLLA 622 (699)
T ss_dssp TEEEEECCC
T ss_pred CCCceEEee
Confidence 455555554
No 315
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.33 E-value=0.12 Score=50.54 Aligned_cols=137 Identities=11% Similarity=0.024 Sum_probs=84.2
Q ss_pred CcchHHHHHHHHhhcCC-CCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~-~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+.-++++|+|+.. ++..+..+.. ..++..+...+...+..++..++..+.|++.........-.....+..+.
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 176 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHH
Confidence 45667889999999984 4455555544 23455555666667788999999999999864221100001123445555
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHHH
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 755 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 755 (760)
+++. ..+++.....+.+|++|.. +++..+.....++-..+-++....++++++.+..++.
T Consensus 177 ~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 177 KLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 6665 3567999999999999997 5544444433343333333333445666666655544
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.29 E-value=0.042 Score=63.26 Aligned_cols=202 Identities=10% Similarity=-0.056 Sum_probs=109.4
Q ss_pred CCEEEEEEcCC-CeE-EEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCDN-VGI-ATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~~-~~l-~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
..+.+++|.+. +.| ++-...+.|+.+++...... ......+.........+++.+.+.. ++++-...+.|.++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~~~~~~i~~~~~~P~glavD~~~g~----LY~tD~~~~~I~v~ 480 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVSVA 480 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--CCCCCBCCSCC--CCCEECCCSSSB----CEECCTTTSCEEEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-cceEEEEeCCCCCcceEEEEeeCCc----EEEEeccCCeEEEE
Confidence 34567888864 444 44455678999988741100 0011111111223445777654442 24554567889999
Q ss_pred ECCCCceEEEEeCCCccEEEEEec--CCeEEEEECC--CeEEEEECC-ceeEEe-ecCCcCeEEEEEeCC-CcEE-EEEC
Q 004329 98 DLGSGEKVQTLQGHKLQVTGVTLD--NEDIVSSSVD--STLKRWRKG-KLVEFW-EAHNAPIQTVIRIPS-GEIV-SGSS 169 (760)
Q Consensus 98 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--g~v~vwd~~-~~~~~~-~~~~~~v~~v~~~~~-~~l~-tgs~ 169 (760)
++........+.........++++ +++|+...+. +.|.++++. .....+ ...-.....+++.++ ++|+ +-+.
T Consensus 481 d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 481 DTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp BSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred ecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence 987554433333223445667775 4555555443 567776653 222222 222334567899986 4454 4456
Q ss_pred CCcEEEEeCCC-ceEEeec---CCCceEEEEEeCCCeEEEEeCCCeEEEEec-CCceEEEee
Q 004329 170 DTTIKLWKGKK-CAQTFVG---HTDTVRGLSVMPGVGIISASHDCTIRLWAL-TGQVLMEMV 226 (760)
Q Consensus 170 dg~i~iwd~~~-~~~~~~~---h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~ 226 (760)
.+.|..++... ..+.+.. ......+|++..+..+++....+.|..++. +++.+..+.
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 67899998643 2233321 123345666665544666667788888885 566555553
No 317
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.07 E-value=0.08 Score=61.13 Aligned_cols=139 Identities=9% Similarity=0.044 Sum_probs=88.2
Q ss_pred cchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhh-hhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQ-SHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~-~~ll~~~~~ 694 (760)
+..+--+++++||+..++..+..+... ...+..+...+.+.+..+|.+++..+-|++.........-.. ...+..+.+
T Consensus 637 ~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 637 LYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp TTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 455788999999999988776655521 134556666667778899999999999999742221100000 123334455
Q ss_pred HhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh-c--CChhHHHHHHHHHHHh
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-S--KETKIAEVGADIELLA 757 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ei~~ll 757 (760)
++. ..|.+..+|.+.||+++.. +++........+.-..+..+.. + +..++.+++.+.+..+
T Consensus 716 LL~--s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 716 LIA--NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHC--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 564 3678999999999999997 4444443333443222322221 2 3567888888877544
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.78 E-value=1.8 Score=52.49 Aligned_cols=226 Identities=9% Similarity=0.149 Sum_probs=138.5
Q ss_pred EEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC---ceeEEe
Q 004329 71 LAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG---KLVEFW 146 (760)
Q Consensus 71 l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~---~~~~~~ 146 (760)
...+|..+ +++--...++.|+|+++...++...- ...|.-..|- ++.++.. .+..|..|+.. .+...+
T Consensus 71 AIMnP~~~------iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 71 AIMNPASK------VIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred hccCCCcc------eEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHH
Confidence 33456655 44444578999999998877666553 3456666775 4444443 45679999874 454455
Q ss_pred ecC----CcCeEEEEEeCCCc--EEEEE------CCCcEEEEeCC-CceEEeecCCCceEEEEEeC---CCeEEEEe---
Q 004329 147 EAH----NAPIQTVIRIPSGE--IVSGS------SDTTIKLWKGK-KCAQTFVGHTDTVRGLSVMP---GVGIISAS--- 207 (760)
Q Consensus 147 ~~~----~~~v~~v~~~~~~~--l~tgs------~dg~i~iwd~~-~~~~~~~~h~~~V~~l~~~~---~~~l~s~s--- 207 (760)
..| ...|..-..+++.+ +++|- -.|.+.+|... +..+.+.||...-..+.... ...+++-.
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence 544 44566666666666 33332 35789999854 44556777766554444332 12233322
Q ss_pred -CCCeEEEEecCC----ceEEE------eec---CCCcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe-cCCc
Q 004329 208 -HDCTIRLWALTG----QVLME------MVG---HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 269 (760)
Q Consensus 208 -~dg~I~iwd~~~----~~~~~------~~~---h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~-~~~~ 269 (760)
..+.++|-++.. ..... +.. ......++..++.. .+...+.-|.|+++| +++++..-+ ...+
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~ 302 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCc
Confidence 237888888632 11111 111 23455667777765 788888999999999 666665444 3346
Q ss_pred EEEEEEccC-CcEEEEEcCCcEEEEeCCCCeeechh
Q 004329 270 VWDAKFLEN-GDIVTACSDGVTRIWTVHSDKVADSL 304 (760)
Q Consensus 270 v~~v~~~~~-g~lvt~~~dg~I~vw~~~~~~~~~~~ 304 (760)
|...+.... +.++.....|.|.--.++....+.-+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi 338 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYI 338 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhhhhH
Confidence 655555443 34888888999988888887776654
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.76 E-value=4.5 Score=41.84 Aligned_cols=215 Identities=12% Similarity=0.079 Sum_probs=118.9
Q ss_pred CCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCc-eEEEEe---CCCccEEEEEecC-----CeEEEEEC----
Q 004329 64 HTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGE-KVQTLQ---GHKLQVTGVTLDN-----EDIVSSSV---- 130 (760)
Q Consensus 64 h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~-~~~~l~---~h~~~V~~l~~~~-----~~l~sgs~---- 130 (760)
.-.....++|.|++. ++.+..+|.|++++. +++ .+..+. ........|++++ +.|+.+..
T Consensus 27 ~l~~P~~ia~~pdG~------l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR------YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp SCSCEEEEEEEETTE------EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCCCeEEEEcCCCe------EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 345678999999886 777778899999974 454 222221 1235678899984 46655543
Q ss_pred C----CeEEEEECCc-------eeEE---eec-CCcCeEEEEEeCCCcEEEEECC--------------CcEEEEeCCCc
Q 004329 131 D----STLKRWRKGK-------LVEF---WEA-HNAPIQTVIRIPSGEIVSGSSD--------------TTIKLWKGKKC 181 (760)
Q Consensus 131 d----g~v~vwd~~~-------~~~~---~~~-~~~~v~~v~~~~~~~l~tgs~d--------------g~i~iwd~~~~ 181 (760)
+ ..|..|+... .... +.. .......+.|.|+|.|+.+..+ |.|.-++....
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 2 4566665321 1111 221 1123456899999996554322 45655554321
Q ss_pred ---------eEEe-ecCCCceEEEEEeC-CCeEEEEeCCC----eEEEEecCC-----------------ceEEEeecCC
Q 004329 182 ---------AQTF-VGHTDTVRGLSVMP-GVGIISASHDC----TIRLWALTG-----------------QVLMEMVGHT 229 (760)
Q Consensus 182 ---------~~~~-~~h~~~V~~l~~~~-~~~l~s~s~dg----~I~iwd~~~-----------------~~~~~~~~h~ 229 (760)
...+ .+| .....++|.| ++.+.++.... .|.+....+ .++..+....
T Consensus 180 ~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 1122 233 3356899999 66766665432 233332111 1222221123
Q ss_pred CcEEEEEEe-------CCC-eEEEEeCCCcEEEEe-C--CceE--EEEec--CCcEEEEEEccCCcEEEEEc
Q 004329 230 AIVYSIDSH-------ASG-LIVSGSEDRFAKIWK-D--GVCV--QSIEH--PGCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 230 ~~v~~v~~~-------p~~-~l~s~s~Dg~I~iwd-~--~~~~--~~~~~--~~~v~~v~~~~~g~lvt~~~ 286 (760)
.....+.+. .+| ++++.-..+.|...+ . +... ..+-. ...+..+++.|||.++.+..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457778874 355 555555666777777 2 2222 22221 34789999999998655553
No 320
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.74 E-value=0.25 Score=48.17 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCCC-CccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 680 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~-~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 680 (760)
+..++..+.+ ..+..+..++++|+|+..+ +..+..+.. ..++..+...+.+.+..+|.+++.++.|++.......
T Consensus 46 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 121 (252)
T 4hxt_A 46 VEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121 (252)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4444443332 2356688899999999887 555555543 2344455555556778899999999999985322111
Q ss_pred CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 681 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 681 ~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
..-.....+..+++++. ..+++.....+.+|++|..
T Consensus 122 ~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 122 KAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHc
Confidence 11011124445556665 3567999999999999987
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.70 E-value=5.9 Score=42.89 Aligned_cols=224 Identities=13% Similarity=0.069 Sum_probs=122.9
Q ss_pred CEEEEEEcCC--CeEEEEEC-CCeEEEEeCCCCCCccceeeeEeeC---CCCCeEEEEE-------eCCCCCCCCcEEEE
Q 004329 21 DVRGICVCDN--VGIATSSR-DRTVRFWSLDPSDKRKYHSSKILLG---HTSFVGPLAW-------ISPNEEFPEGGLVS 87 (760)
Q Consensus 21 ~V~~v~~~~~--~~l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~~---h~~~V~~l~~-------~~~~~~~~~~~l~s 87 (760)
....|+|.|. +.|..+.. .+.|++.|+..+. ....... .......++| .+++. .++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-----~lyv 209 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-----YMIV 209 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-----EEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCC-----EEEE
Confidence 3568899983 44555544 4678888887443 1111211 1235889999 88886 3555
Q ss_pred EeCCC-------eEEEEECCC-CceE-----EEEeCCCccEEEEEec--CCeE-EEEECCCeEEEEECC--------cee
Q 004329 88 GGMDT-------MVLVWDLGS-GEKV-----QTLQGHKLQVTGVTLD--NEDI-VSSSVDSTLKRWRKG--------KLV 143 (760)
Q Consensus 88 gs~dg-------~I~vwd~~~-~~~~-----~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~v~vwd~~--------~~~ 143 (760)
+...+ .|.+++... +... ..+... .....++.+ ++.| ++-..++.|..+|.. ...
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 55443 266666443 2221 222211 122345555 3454 455577789988754 111
Q ss_pred -------------EEee-cCCcCeEEEEEeCCCc-EE-EEECCCcEEEEeC--CCc-e---EEeecC---C---------
Q 004329 144 -------------EFWE-AHNAPIQTVIRIPSGE-IV-SGSSDTTIKLWKG--KKC-A---QTFVGH---T--------- 189 (760)
Q Consensus 144 -------------~~~~-~~~~~v~~v~~~~~~~-l~-tgs~dg~i~iwd~--~~~-~---~~~~~h---~--------- 189 (760)
..+. ........++++|++. ++ +-+..+.|+.++. ... . ..+.+. .
T Consensus 289 ~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp CCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred ecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence 1122 2233457899999998 44 4456678888653 221 1 233221 0
Q ss_pred ---CceE-EEEEe-------CCCeE-EEEeCCCeEEEEecCCceEEEeecCC------------------------CcEE
Q 004329 190 ---DTVR-GLSVM-------PGVGI-ISASHDCTIRLWALTGQVLMEMVGHT------------------------AIVY 233 (760)
Q Consensus 190 ---~~V~-~l~~~-------~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~h~------------------------~~v~ 233 (760)
.... .++.. +++.| ++=.....|+.++.+| .+.++.+.. ....
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred cccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 1234 45554 34454 4445678899998766 344444321 2356
Q ss_pred EEEEeCC-C-eEEEEeCCCcEEEEe
Q 004329 234 SIDSHAS-G-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 234 ~v~~~p~-~-~l~s~s~Dg~I~iwd 256 (760)
.|++.++ + ++++-.....||.++
T Consensus 448 gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEeCCCCEEEEEE
Confidence 7788775 6 555555666777776
No 322
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.60 E-value=0.35 Score=47.33 Aligned_cols=112 Identities=18% Similarity=0.083 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHhhcCC-CCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhc
Q 004329 601 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK 679 (760)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~-~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~ 679 (760)
.+..++..+.+. .+..+.-++++|.|+.. ++..+..+... ..+..+...+.+.+..+|..++..+.|++......
T Consensus 55 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 55 ALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 344555544332 25668889999999987 44555554442 34555555566678889999999999997532111
Q ss_pred CCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 680 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 680 ~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
...-.....+..+++++. ..+++.....+.+|++|..
T Consensus 131 ~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 131 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHc
Confidence 000011124445556664 3477899999999999997
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.50 E-value=1.5 Score=41.64 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=93.7
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCC--CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCce------
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGH--TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEK------ 104 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~------ 104 (760)
|+....| +++.=...++....+.......++ =..+..++|+|++. |... .+|.++-.+..+...
T Consensus 7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~------LYaV-~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE------LYGV-LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp EEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC------EEEE-ETTEEEEESCCCSTTCCHHHH
T ss_pred EEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc------EEEE-eCCeEEEECCCCCCccccccc
Confidence 7777777 666555544432234222223333 24677999999776 6666 788877777654211
Q ss_pred EEEEe-CCCccEEEEEec-CCeEEEEECCCeEEEEECCc---------eeEEeecCCcCeEEEEEeCCCcEEEEECCCcE
Q 004329 105 VQTLQ-GHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGK---------LVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTI 173 (760)
Q Consensus 105 ~~~l~-~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~---------~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i 173 (760)
-..+- .--....++.|+ ++.|..+ .||.|.-++... ....-..-=..+..+.+.|+|.|.+.. |+.+
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred ccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 11111 011113577787 5556666 679888776421 011111122467899999999988888 8885
Q ss_pred EEEeCC--C------ceEEee-cCCCceEEEEEeCCCeEEEEeCCCeE
Q 004329 174 KLWKGK--K------CAQTFV-GHTDTVRGLSVMPGVGIISASHDCTI 212 (760)
Q Consensus 174 ~iwd~~--~------~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~I 212 (760)
+-...- . ....+. ..-..-+-+.+.+++.+.... +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeE
Confidence 443311 1 011111 233344556677777766666 6643
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.40 E-value=3.1 Score=42.99 Aligned_cols=144 Identities=11% Similarity=0.131 Sum_probs=84.7
Q ss_pred EEEEEeCCCcEEEEE-------------CCCcEEEEeCCCc---eE--Eeec-----CCCceEEEEEeC--CC--eEEEE
Q 004329 154 QTVIRIPSGEIVSGS-------------SDTTIKLWKGKKC---AQ--TFVG-----HTDTVRGLSVMP--GV--GIISA 206 (760)
Q Consensus 154 ~~v~~~~~~~l~tgs-------------~dg~i~iwd~~~~---~~--~~~~-----h~~~V~~l~~~~--~~--~l~s~ 206 (760)
-.+...++|.+++++ .+|.|.++|..+. .. .+.+ .......+.+.+ ++ +++.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 345556666655554 6888888886521 12 2222 234677777765 23 34444
Q ss_pred e-C--CCeEEEEec--CCce---EEEeecC-CCcEEEEEEeCCC-eEEEEe-----------------CCCcEEEEeCCc
Q 004329 207 S-H--DCTIRLWAL--TGQV---LMEMVGH-TAIVYSIDSHASG-LIVSGS-----------------EDRFAKIWKDGV 259 (760)
Q Consensus 207 s-~--dg~I~iwd~--~~~~---~~~~~~h-~~~v~~v~~~p~~-~l~s~s-----------------~Dg~I~iwd~~~ 259 (760)
. . +.+|.+|++ .+.. +..+.+. -...+.+.+.++| +.++.. ..|.|.-+|.++
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 3 2 467888775 3332 2233332 2467899999999 444433 124566666554
Q ss_pred eEEEEecCCcEEEEEEccCCc-EE-EEEcCCcEEEEeCCC
Q 004329 260 CVQSIEHPGCVWDAKFLENGD-IV-TACSDGVTRIWTVHS 297 (760)
Q Consensus 260 ~~~~~~~~~~v~~v~~~~~g~-lv-t~~~dg~I~vw~~~~ 297 (760)
+......-...+.++|+||++ ++ +-+..+.|+.|+++.
T Consensus 213 ~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 213 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 433333344679999999998 44 444588999999874
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.17 E-value=3.2 Score=43.60 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCcEEEEECCCcEEEEeCCCc--------------eEEeec------CCCceEEEEEeC----CCeEEEEe
Q 004329 152 PIQTVIRIPSGEIVSGSSDTTIKLWKGKKC--------------AQTFVG------HTDTVRGLSVMP----GVGIISAS 207 (760)
Q Consensus 152 ~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~--------------~~~~~~------h~~~V~~l~~~~----~~~l~s~s 207 (760)
.+..+..+|+|.+++-..+..|.+..+... .+.+.- ...+|..+.|+| +..+++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 577799999999888888888888863310 112221 257799999999 45699999
Q ss_pred CCCeEEEEecCC---ceEEEee---------cCCCcEEEEEEeCCC-eEEE--EeCCCcEEEE
Q 004329 208 HDCTIRLWALTG---QVLMEMV---------GHTAIVYSIDSHASG-LIVS--GSEDRFAKIW 255 (760)
Q Consensus 208 ~dg~I~iwd~~~---~~~~~~~---------~h~~~v~~v~~~p~~-~l~s--~s~Dg~I~iw 255 (760)
.|+.||+||+.. ++. .+. .+...|.+++|.+++ .|.. .+++|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999753 222 222 122556777777766 4444 3366665543
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.78 E-value=3.3 Score=43.54 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=83.4
Q ss_pred CCCcEEEEeCC--CceEEeecC----CCceEEEEEeCCCeEEEEeCCCeEEEEecC-Cc------------eEEEeec--
Q 004329 169 SDTTIKLWKGK--KCAQTFVGH----TDTVRGLSVMPGVGIISASHDCTIRLWALT-GQ------------VLMEMVG-- 227 (760)
Q Consensus 169 ~dg~i~iwd~~--~~~~~~~~h----~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~-~~------------~~~~~~~-- 227 (760)
.++.||.-+.. ...+.+... -+.|..+..+|++.+++-..+..|.|..+. +. ..+.+.-
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 34667766643 223333332 236788999999998888888899999864 21 1222221
Q ss_pred ----CCCcEEEEEEeCCC----eEEEEeCCCcEEEEe-C---CceEEEEe----------cCCcEEEEEEccCCc-EEEE
Q 004329 228 ----HTAIVYSIDSHASG----LIVSGSEDRFAKIWK-D---GVCVQSIE----------HPGCVWDAKFLENGD-IVTA 284 (760)
Q Consensus 228 ----h~~~v~~v~~~p~~----~l~s~s~Dg~I~iwd-~---~~~~~~~~----------~~~~v~~v~~~~~g~-lvt~ 284 (760)
...+|..+.|||-+ .|++-..|+.||+|| . ..+. .+. ....|.+++|.++|- +...
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 35789999999976 899999999999999 2 1222 332 124688999999776 6665
Q ss_pred E--cCCcEEEE
Q 004329 285 C--SDGVTRIW 293 (760)
Q Consensus 285 ~--~dg~I~vw 293 (760)
+ ..|.|+-.
T Consensus 198 ~~t~~GDIYAl 208 (452)
T 3pbp_A 198 NTTEGGDIFAF 208 (452)
T ss_dssp ECTTSCEEEEE
T ss_pred ecCCCCCEEEE
Confidence 5 67877644
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.32 Score=50.08 Aligned_cols=103 Identities=8% Similarity=0.079 Sum_probs=64.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEeCC-CccEEEEEe----cCCeEEEE--ECCCeEEEEECCceeEEeec------C
Q 004329 83 GGLVSGGMDTMVLVWDLGSGEKVQTLQGH-KLQVTGVTL----DNEDIVSS--SVDSTLKRWRKGKLVEFWEA------H 149 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~----~~~~l~sg--s~dg~v~vwd~~~~~~~~~~------~ 149 (760)
+.++.++.||.|+-+|..+|+....++.. ..++....- .++.++.+ +.||.+..++...-...+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46999999999999999999999998754 122222111 13344444 58999999987543333321 1
Q ss_pred CcCeEE---EEE------eCCCcEEEEECCCcEEEEeCCCceEEe
Q 004329 150 NAPIQT---VIR------IPSGEIVSGSSDTTIKLWKGKKCAQTF 185 (760)
Q Consensus 150 ~~~v~~---v~~------~~~~~l~tgs~dg~i~iwd~~~~~~~~ 185 (760)
..++.. ... +.++.+++|+.+|.+...|..+.....
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 222221 001 245668899999999999966544433
No 328
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.18 E-value=13 Score=41.59 Aligned_cols=148 Identities=11% Similarity=-0.010 Sum_probs=94.5
Q ss_pred cCeEEEEEeCC-CcEE-EEECCCcEEEEeCCC-ceE-EeecCCCceEEEEEeC-CCe-EEEEeCCCeEEEEecCCceEEE
Q 004329 151 APIQTVIRIPS-GEIV-SGSSDTTIKLWKGKK-CAQ-TFVGHTDTVRGLSVMP-GVG-IISASHDCTIRLWALTGQVLME 224 (760)
Q Consensus 151 ~~v~~v~~~~~-~~l~-tgs~dg~i~iwd~~~-~~~-~~~~h~~~V~~l~~~~-~~~-l~s~s~dg~I~iwd~~~~~~~~ 224 (760)
..+.++.+.+. +.++ +-...+.|+.++... ... .....-.....+++.. ++. +++-+..+.|.+.+++|.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 34678888874 5554 444577888887543 222 2333335677899986 555 5555667899999998876655
Q ss_pred eec-CCCcEEEEEEeCC-CeEEEEe--CCCcEEEEe-CCceEEEEec--CCcEEEEEEccCCc-EEEEEc-CCcEEEEeC
Q 004329 225 MVG-HTAIVYSIDSHAS-GLIVSGS--EDRFAKIWK-DGVCVQSIEH--PGCVWDAKFLENGD-IVTACS-DGVTRIWTV 295 (760)
Q Consensus 225 ~~~-h~~~v~~v~~~p~-~~l~s~s--~Dg~I~iwd-~~~~~~~~~~--~~~v~~v~~~~~g~-lvt~~~-dg~I~vw~~ 295 (760)
+.. .-....++++.|. |.|+... ....|...+ .|.....+.. -.....+++.+++. ++.+.. .+.|..+++
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 543 3467899999996 5444443 235566555 5554444432 34788999998655 555544 577888887
Q ss_pred CCC
Q 004329 296 HSD 298 (760)
Q Consensus 296 ~~~ 298 (760)
+..
T Consensus 509 dG~ 511 (619)
T 3s94_A 509 DGT 511 (619)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 329
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.70 E-value=3 Score=41.61 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=107.1
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEEC
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDL 99 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~ 99 (760)
..|..|+......++. . ||.|..|-.....+... + ......|..++..... .++. . ||.|+.|-.
T Consensus 24 ~~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~-p----~~~~~~i~~ia~G~~h------s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTM-P----AATQSGVDAIAAGNYH------SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SSCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSC-C----GGGGSCCCEEEECSSE------EEEE-E-TTEEEEEEC
T ss_pred CCCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCC-C----ccCCCCEEEEEeCCCE------EEEE-E-CCEEEEeeC
Confidence 4677777665544444 4 89999997653321111 0 0112356666654332 2444 4 899999976
Q ss_pred CCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEe
Q 004329 100 GSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWK 177 (760)
Q Consensus 100 ~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd 177 (760)
...-.+..-..-...|..++......+.-. ||.|..|-.+ ..+.........|..++......++. . ||.+..|-
T Consensus 89 n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG 165 (282)
T 3qhy_B 89 NEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWG 165 (282)
T ss_dssp CTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEE
T ss_pred CCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEec
Confidence 532111111111346888887766755666 9999999432 11111112234566665544333333 3 78888885
Q ss_pred CCCc--eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC--CceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEE
Q 004329 178 GKKC--AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAK 253 (760)
Q Consensus 178 ~~~~--~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~ 253 (760)
.... ...-......|..++......++. .||.|..|-.. ++.-.. ......|..++.-....++. . ||.|.
T Consensus 166 ~n~~gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~h~~al-~-~g~v~ 240 (282)
T 3qhy_B 166 DNYFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVP-TEALSGVSAIASGEWYSLAL-K-NGKVI 240 (282)
T ss_dssp CCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCC-GGGGSSCCEEEECSSCEEEE-E-TTEEE
T ss_pred CCCCCCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCC-cccCCCceEEEcCCCEEEEE-E-CCEEE
Confidence 3221 100011134566666554333444 58888888632 221100 01112344554433332322 2 77777
Q ss_pred EEe
Q 004329 254 IWK 256 (760)
Q Consensus 254 iwd 256 (760)
.|=
T Consensus 241 ~wG 243 (282)
T 3qhy_B 241 AWG 243 (282)
T ss_dssp EES
T ss_pred Eec
Confidence 774
No 330
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.27 E-value=0.7 Score=43.62 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHhhcCCC-CccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~-~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+.-+++.|+|+... +..+..+.. ..++..+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 355678899999999854 444444443 23455555556666788999999999999853221111000112334455
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++.. .+++.....+.||++|..
T Consensus 103 ~lL~~--~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 103 QLLSS--PNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred HHHcC--CcHHHHHHHHHHHHHHHc
Confidence 66643 467899999999999986
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.18 E-value=5.8 Score=37.70 Aligned_cols=144 Identities=5% Similarity=-0.066 Sum_probs=83.5
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCC--CCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEE
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGH--TSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVW 97 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vw 97 (760)
..+++++|+|++.|... .+|.+.-.+..+.....+.-.....+. -..-.++.|.+++. |..+ .||.|+-+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~------LYav-~dG~iyr~ 112 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY------LYAV-SKDKLYKA 112 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC------EEEE-ETTEEEEE
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC------EEEe-CCCEEEEe
Confidence 46779999999997666 778776666544333222222222111 11246888888886 5655 67999888
Q ss_pred ECCCCce-------EEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC--------ceeEEee-cCCcCeEEEEEeC
Q 004329 98 DLGSGEK-------VQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG--------KLVEFWE-AHNAPIQTVIRIP 160 (760)
Q Consensus 98 d~~~~~~-------~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~--------~~~~~~~-~~~~~v~~v~~~~ 160 (760)
+..+... ...-.+--..+..+.++ ++.|.... |+.++-+... .....+. ..-..-+.+.+.+
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 8643211 11112223567888888 67777777 8886544221 0111111 2233344566888
Q ss_pred CCcEEEEECCCcE
Q 004329 161 SGEIVSGSSDTTI 173 (760)
Q Consensus 161 ~~~l~tgs~dg~i 173 (760)
++.+.... ++.+
T Consensus 192 ~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ-GGKF 203 (236)
T ss_dssp TSCEEEEE-TTEE
T ss_pred CCcEEEEe-CCeE
Confidence 88877766 6644
No 332
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.34 E-value=6.8 Score=38.97 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=112.2
Q ss_pred CeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECCCeEEEEECC--ceeE
Q 004329 67 FVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKG--KLVE 144 (760)
Q Consensus 67 ~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~~--~~~~ 144 (760)
.|..++.-... .++. . ||.|+.|-....-.+..-......|..++......+.-. ||.+..|-.+ ..+-
T Consensus 25 ~i~~ia~G~~h------~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH------GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE------EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe------EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC
Confidence 56666653322 2333 5 899999976432211111112346777777655533335 9999999432 1111
Q ss_pred EeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCCc--eEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecC--Cc
Q 004329 145 FWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC--AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALT--GQ 220 (760)
Q Consensus 145 ~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~~--~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~--~~ 220 (760)
....-...|..++......++. . ||.|+.|-.... ...-......|..++......++. . ||.|..|-.. ++
T Consensus 96 ~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp CCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTST
T ss_pred CCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCC
Confidence 1111134677777665444443 4 999999953221 111111234577776553333443 3 7999999642 22
Q ss_pred eEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe---CCceEEEEecCCcEEEEEEccCCcEEEEEcCCcEEEEeCCC
Q 004329 221 VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 221 ~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd---~~~~~~~~~~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~ 297 (760)
.- .-......|..++.-....++. .||.|..|= .+.+-........|..++...+..++.. ||.|..|-...
T Consensus 172 lg-~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 172 TT-VPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp TS-CCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTC
T ss_pred CC-CceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCC
Confidence 11 0011134677777655544444 599999996 2222111112235667765444334443 99999998765
Q ss_pred C
Q 004329 298 D 298 (760)
Q Consensus 298 ~ 298 (760)
.
T Consensus 247 ~ 247 (282)
T 3qhy_B 247 T 247 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.28 E-value=12 Score=37.30 Aligned_cols=212 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred EEEEEeCC----CeEEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECCC-----eEEEEECCceeEE-eec---
Q 004329 84 GLVSGGMD----TMVLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVDS-----TLKRWRKGKLVEF-WEA--- 148 (760)
Q Consensus 84 ~l~sgs~d----g~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~dg-----~v~vwd~~~~~~~-~~~--- 148 (760)
+++.|+.+ ..+..||+.+.+-... +......-..+..++..++.|+.++ .+.+||....... +..
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 97 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD 97 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc
Confidence 35555543 4588899887753322 1111112222333444566666543 4777887532222 111
Q ss_pred CCcCeEEEEEeCCCc-EEEEECCC-----cEEEEeCCCceEEee-c--CCCceEEEEEeCCCe-EEEEeCC-------Ce
Q 004329 149 HNAPIQTVIRIPSGE-IVSGSSDT-----TIKLWKGKKCAQTFV-G--HTDTVRGLSVMPGVG-IISASHD-------CT 211 (760)
Q Consensus 149 ~~~~v~~v~~~~~~~-l~tgs~dg-----~i~iwd~~~~~~~~~-~--h~~~V~~l~~~~~~~-l~s~s~d-------g~ 211 (760)
..... +++.. ++. ++.|+.++ .+.+||..+..-... . ....-.+++.. ++. ++.|+.+ ..
T Consensus 98 ~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 98 RRSTL-GAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLST 174 (302)
T ss_dssp CCBSC-EEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCC
T ss_pred cccce-EEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccE
Confidence 11111 22222 455 55666543 466777654332211 1 11111223333 444 5555542 34
Q ss_pred EEEEecCCceEEEeecCC--CcEEEEEEeCCCeEEEEeCC-----CcEEEEe-CCceEEEEe---cCCcEEEEEEccCCc
Q 004329 212 IRLWALTGQVLMEMVGHT--AIVYSIDSHASGLIVSGSED-----RFAKIWK-DGVCVQSIE---HPGCVWDAKFLENGD 280 (760)
Q Consensus 212 I~iwd~~~~~~~~~~~h~--~~v~~v~~~p~~~l~s~s~D-----g~I~iwd-~~~~~~~~~---~~~~v~~v~~~~~g~ 280 (760)
+.+||.....-..+.... ..-.+++...+..++.|+.+ ..+.+|| ....-..+. .+..-.+++. -++.
T Consensus 175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~ 253 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGL 253 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred EEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCE
Confidence 788887655443332111 11112333333366666654 3588888 222222222 1111112222 2556
Q ss_pred -EEEEEcCC-----cEEEEeCCCCe
Q 004329 281 -IVTACSDG-----VTRIWTVHSDK 299 (760)
Q Consensus 281 -lvt~~~dg-----~I~vw~~~~~~ 299 (760)
++.|+.++ .+.+||..+.+
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEECCcCCCcccccEEEEcCCCCe
Confidence 56666553 36677766554
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.97 E-value=18 Score=38.63 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=57.7
Q ss_pred CcCeEEEEEeCCCcEEEEECCC-cEEEEeCC-CceEEeec---------CCCceEEEEEeC----CCeEEEEeC------
Q 004329 150 NAPIQTVIRIPSGEIVSGSSDT-TIKLWKGK-KCAQTFVG---------HTDTVRGLSVMP----GVGIISASH------ 208 (760)
Q Consensus 150 ~~~v~~v~~~~~~~l~tgs~dg-~i~iwd~~-~~~~~~~~---------h~~~V~~l~~~~----~~~l~s~s~------ 208 (760)
-...+.+++.|+|+++++...+ .|++++.. .....+.. .......|+++| ++.|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999988888775 68888743 22222211 235567999999 555444432
Q ss_pred -------CCeEEEEecCC--------ceEEE-ee-cCCCcEEEEEEeCCC-eEEEEe
Q 004329 209 -------DCTIRLWALTG--------QVLME-MV-GHTAIVYSIDSHASG-LIVSGS 247 (760)
Q Consensus 209 -------dg~I~iwd~~~--------~~~~~-~~-~h~~~v~~v~~~p~~-~l~s~s 247 (760)
...|.-|+.+. +.+.. +. ........|.|.|+| +.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455555421 11211 21 123457899999999 444433
No 335
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.74 E-value=20 Score=35.48 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCe-EEEEECC-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC-----CeEEEEE
Q 004329 30 NVG-IATSSRD-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD-----TMVLVWD 98 (760)
Q Consensus 30 ~~~-l~tgs~D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d-----g~I~vwd 98 (760)
++. ++.|+.+ ..+.+||+.+.....+.....+......-.++.+ ++. +++.|+.+ ..+.+||
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~-----lyv~GG~~~~~~~~~~~~~d 134 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM-----IYVSGGFDGSRRHTSMERYD 134 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE-----EEEECCBCSSCBCCEEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE-----EEEEcccCCCcccceEEEEc
Confidence 455 6777755 4688899876542223333322222222222222 332 45666543 3688999
Q ss_pred CCCCceEEE--EeCCCccEEEEEecCCeEEEEECC-----CeEEEEECCceeEEeec----CCcCeEEEEEeCCCc-EEE
Q 004329 99 LGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD-----STLKRWRKGKLVEFWEA----HNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 99 ~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~~----~~~~v~~v~~~~~~~-l~t 166 (760)
+.+.+-... +........++.+++..++.|+.+ ..+.+||.......... ..... ++... +++ ++.
T Consensus 135 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~ 212 (301)
T 2vpj_A 135 PNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVALL-NDHIYVV 212 (301)
T ss_dssp TTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEE
T ss_pred CCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEEE-CCEEEEE
Confidence 987754332 222222223333445556666654 34778887533222111 11111 22222 455 456
Q ss_pred EECC-----CcEEEEeCCCc
Q 004329 167 GSSD-----TTIKLWKGKKC 181 (760)
Q Consensus 167 gs~d-----g~i~iwd~~~~ 181 (760)
|+.+ ..+.+||..+.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCC
Confidence 6553 46788886543
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.59 E-value=24 Score=36.18 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=51.2
Q ss_pred EEeccCCCCEEEEEEcCCCeEEEEEC-CCeEEEEeCCCCCCccceeee----EeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329 13 SELRGHEDDVRGICVCDNVGIATSSR-DRTVRFWSLDPSDKRKYHSSK----ILLGHTSFVGPLAWISPNEEFPEGGLVS 87 (760)
Q Consensus 13 ~~l~gH~~~V~~v~~~~~~~l~tgs~-Dg~i~iWd~~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~~~~~~~~~l~s 87 (760)
..+...-..-+.|+|.|+|.++.+.+ .|.|++++..++.. .... ...........|+++|+-.. ++.|+.
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~---~~v~~~~~v~~~g~~GllGia~~Pdf~~--~g~lYv 99 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK---TELGEVPGVSPSGEGGLLGIALSPDYAS--DHMVYA 99 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECTTCCCBTTBSEEEEEECTTHHH--HCEEEE
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE---eeecccCceeecCCCCceeeEecccccc--CCEEEE
Confidence 34444445678999999999777777 89999998654431 1111 11234567899999996210 113443
Q ss_pred E---eCCCeEEEEECCC
Q 004329 88 G---GMDTMVLVWDLGS 101 (760)
Q Consensus 88 g---s~dg~I~vwd~~~ 101 (760)
. ..++.|.-|....
T Consensus 100 ~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 100 YFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECSSSEEEEEEEBCT
T ss_pred EEecCCCCEEEEEEeCC
Confidence 3 2455666676654
No 337
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.19 E-value=22 Score=35.25 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCe-EEEEECC-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC-----eEEEEE
Q 004329 30 NVG-IATSSRD-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT-----MVLVWD 98 (760)
Q Consensus 30 ~~~-l~tgs~D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg-----~I~vwd 98 (760)
++. ++.|+.+ ..+.+||..+.. +.....+........++.+ ++. +++.|+.++ .+.+||
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~--~~~-----iyv~GG~~~~~~~~~~~~~d 130 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ---WTSVANMRDRRSTLGAAVL--NGL-----LYAVGGFDGSTGLSSVEAYN 130 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE---EEEECCCSSCCBSCEEEEE--TTE-----EEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc---eeeCCCCCccccceEEEEE--CCE-----EEEEcCCCCCccCceEEEEe
Confidence 455 6667654 357888877543 3333322222222222222 232 466676553 578899
Q ss_pred CCCCceEEE--EeCCCccEEEEEecCCeEEEEECC-------CeEEEEECCc
Q 004329 99 LGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD-------STLKRWRKGK 141 (760)
Q Consensus 99 ~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d-------g~v~vwd~~~ 141 (760)
+.+.+-... +........+..+++..++.|+.+ ..+.+||...
T Consensus 131 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 131 IKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 887654332 111122222333444445555542 3477778753
No 338
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.12 E-value=22 Score=35.27 Aligned_cols=212 Identities=8% Similarity=0.013 Sum_probs=98.5
Q ss_pred EEEEEeC--CCeEEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECC----CeEEEEECCceeEE-eec---CCc
Q 004329 84 GLVSGGM--DTMVLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD----STLKRWRKGKLVEF-WEA---HNA 151 (760)
Q Consensus 84 ~l~sgs~--dg~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d----g~v~vwd~~~~~~~-~~~---~~~ 151 (760)
+++.|+. ...+.+||..+++-... +........++..++..++.|+.+ ..+.+||....... +.. ...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4556664 35788999987754322 111222223334445556666654 56777887532221 111 111
Q ss_pred CeEEEEEeCCCc-EEEEECC------CcEEEEeCCCceEEeec---CCCceEEEEEeCCCe-EEEEeC---------CCe
Q 004329 152 PIQTVIRIPSGE-IVSGSSD------TTIKLWKGKKCAQTFVG---HTDTVRGLSVMPGVG-IISASH---------DCT 211 (760)
Q Consensus 152 ~v~~v~~~~~~~-l~tgs~d------g~i~iwd~~~~~~~~~~---h~~~V~~l~~~~~~~-l~s~s~---------dg~ 211 (760)
.. +++.. +++ ++.|+.+ ..+.+||.....-.... ....-.+++.. ++. ++.|+. -..
T Consensus 94 ~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 170 (306)
T 3ii7_A 94 SL-AACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNS 170 (306)
T ss_dssp SC-EEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCC
T ss_pred ce-eEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccce
Confidence 11 22222 455 4566654 45788886543322111 11111122333 445 555543 345
Q ss_pred EEEEecCCceEEEeecCCC--cEEEEEEeCCCeEEEEeCC-----CcEEEEe-CCceEEEEe---cCCcEEEEEEccCCc
Q 004329 212 IRLWALTGQVLMEMVGHTA--IVYSIDSHASGLIVSGSED-----RFAKIWK-DGVCVQSIE---HPGCVWDAKFLENGD 280 (760)
Q Consensus 212 I~iwd~~~~~~~~~~~h~~--~v~~v~~~p~~~l~s~s~D-----g~I~iwd-~~~~~~~~~---~~~~v~~v~~~~~g~ 280 (760)
+.+||.....-..+..... .-.++....+.+++.|+.+ ..+.+|| ....-..+. .+..-.+++.. ++.
T Consensus 171 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~ 249 (306)
T 3ii7_A 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSI 249 (306)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTE
T ss_pred EEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCE
Confidence 8888876654444432111 1122333333366666543 3577888 222222222 11111222222 556
Q ss_pred -EEEEEcC-----CcEEEEeCCCCe
Q 004329 281 -IVTACSD-----GVTRIWTVHSDK 299 (760)
Q Consensus 281 -lvt~~~d-----g~I~vw~~~~~~ 299 (760)
++.|+.+ ..+.+||..+.+
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 6667654 456667766554
No 339
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=87.72 E-value=2.8 Score=45.99 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred cchHHHHHHHHhhcCCCCcc-HHHHHhhHHHHHHHhhhccCCC-CchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSS-NKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
+..+.-++++|+|+..+... .+.+.. ..++..+...+... +..++..++.++-|++.........-....++..++
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 45578899999999875543 333333 23444455555555 778999999999999863111000000112334445
Q ss_pred HHhhccccchhHHHHHHHHHhhhcch
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLMLE 719 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~~ 719 (760)
+++.. .+++.....+.||++|...
T Consensus 378 ~lL~~--~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 378 NLLQT--AEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHHHcC
Confidence 55543 3678999999999999874
No 340
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.50 E-value=23 Score=34.91 Aligned_cols=211 Identities=12% Similarity=0.148 Sum_probs=97.3
Q ss_pred EEEEE-CC-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC-----CeEEEEECCC
Q 004329 33 IATSS-RD-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD-----TMVLVWDLGS 101 (760)
Q Consensus 33 l~tgs-~D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d-----g~I~vwd~~~ 101 (760)
++.|+ .+ ..+.+||+.+.. +.....+........++. . ++. +++.|+.+ ..+.+||+.+
T Consensus 18 ~~~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~-~-~~~-----l~v~GG~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 18 LVVGGFGSQQSPIDVVEKYDPKTQE---WSFLPSITRKRRYVASVS-L-HDR-----IYVIGGYDGRSRLSSVECLDYTA 87 (301)
T ss_dssp EEECCEETTTEECCCEEEEETTTTE---EEECCCCSSCCBSCEEEE-E-TTE-----EEEECCBCSSCBCCCEEEEETTC
T ss_pred EEEeCccCCCcceeEEEEEcCCCCe---EEeCCCCChhhccccEEE-E-CCE-----EEEEcCCCCCccCceEEEEECCC
Confidence 55555 32 368888887543 333322222122222222 2 232 46667654 4689999987
Q ss_pred Cc---eEEE--EeCCCccEEEEEecCCeEEEEECC-----CeEEEEECCceeEE----eecCCcCeEEEEEeCCCc-EEE
Q 004329 102 GE---KVQT--LQGHKLQVTGVTLDNEDIVSSSVD-----STLKRWRKGKLVEF----WEAHNAPIQTVIRIPSGE-IVS 166 (760)
Q Consensus 102 ~~---~~~~--l~~h~~~V~~l~~~~~~l~sgs~d-----g~v~vwd~~~~~~~----~~~~~~~v~~v~~~~~~~-l~t 166 (760)
.+ .... +........++..++..++.|+.+ ..+.+||....... .......- +++.. +++ ++.
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~ 165 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVA-SGVIYCL 165 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEE-TTEEEEE
T ss_pred CCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEE-CCEEEEE
Confidence 76 3322 221222223333444446666544 35777886532211 11111111 22222 455 455
Q ss_pred EECC-----CcEEEEeCCCceEEeec---CCCceEEEEEeCCCe-EEEEeCC-----CeEEEEecCCceEEEeecCC--C
Q 004329 167 GSSD-----TTIKLWKGKKCAQTFVG---HTDTVRGLSVMPGVG-IISASHD-----CTIRLWALTGQVLMEMVGHT--A 230 (760)
Q Consensus 167 gs~d-----g~i~iwd~~~~~~~~~~---h~~~V~~l~~~~~~~-l~s~s~d-----g~I~iwd~~~~~~~~~~~h~--~ 230 (760)
|+.+ ..+..||..+..-.... ....-.+++.. ++. ++.|+.+ ..+.+||.....-..+.... .
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 5543 45778886543322211 11111223333 444 6666654 46888998665544443211 1
Q ss_pred cEEEEEEeCCCeEEEEeCC-----CcEEEEe
Q 004329 231 IVYSIDSHASGLIVSGSED-----RFAKIWK 256 (760)
Q Consensus 231 ~v~~v~~~p~~~l~s~s~D-----g~I~iwd 256 (760)
.-.+++...+..++.|+.+ ..+.+||
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 275 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYD 275 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBEEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCCCcccccEEEEc
Confidence 1112223322256666654 3456666
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.37 E-value=1.2 Score=45.68 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=96.3
Q ss_pred CCeEEEEECCCeEEEEECC--ceeEEeecC-CcCeEEEEEe---CCCcEEEE--ECCCcEEEEeCCCceEEeec------
Q 004329 122 NEDIVSSSVDSTLKRWRKG--KLVEFWEAH-NAPIQTVIRI---PSGEIVSG--SSDTTIKLWKGKKCAQTFVG------ 187 (760)
Q Consensus 122 ~~~l~sgs~dg~v~vwd~~--~~~~~~~~~-~~~v~~v~~~---~~~~l~tg--s~dg~i~iwd~~~~~~~~~~------ 187 (760)
++.++.++.||.|.-.|.. +....++.. ..++....-. .++.++.+ +.||.+..++.......+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4568999999999999864 555555433 1222221100 12344444 57999999986654433221
Q ss_pred CCCceEE---EEE------eCCCeEEEEeCCCeEEEEec-CCceEEEeecCCC--c-----EEEEEE------eCCCeEE
Q 004329 188 HTDTVRG---LSV------MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA--I-----VYSIDS------HASGLIV 244 (760)
Q Consensus 188 h~~~V~~---l~~------~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~--~-----v~~v~~------~p~~~l~ 244 (760)
...++.. ..+ +.++.+++++.+|++...|. +|+.+.++..... . ..|... ..++.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 2222321 001 14667899999999999996 6888877753211 0 111111 1123566
Q ss_pred EEeCCCcEEEEe-CCceEEEEe-----cCC---cE-EEEEEccCCcEEEEEcCCcEEEEeCCCCeeec
Q 004329 245 SGSEDRFAKIWK-DGVCVQSIE-----HPG---CV-WDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 302 (760)
Q Consensus 245 s~s~Dg~I~iwd-~~~~~~~~~-----~~~---~v-~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~ 302 (760)
.+..+..+.+.+ ++. ...+. ... .+ .+-..+.|+.++.++.||.|.-+|..+|+.+.
T Consensus 170 ig~~~y~v~~~~~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHSYDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECCTTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEECCCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 666666666544 221 11110 000 00 00000124666778999999999999988765
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=86.81 E-value=34 Score=36.08 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=111.2
Q ss_pred EcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-CceE
Q 004329 27 VCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-GEKV 105 (760)
Q Consensus 27 ~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~ 105 (760)
.+|..++++--...++.|+|+++.. ..+...- ...|.--.|..+.. |+..+ +..|+-|+++. ..++
T Consensus 73 MnP~~~iiALrag~~lQiFnle~K~-----klks~~~-~e~VvfWkWis~~~------l~lVT-~taVyHWsi~~~s~P~ 139 (494)
T 1bpo_A 73 MNPASKVIALKAGKTLQIFNIEMKS-----KMKAHTM-TDDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPV 139 (494)
T ss_dssp ECSSSSCEEEEETTEEEEEETTTTE-----EEEEEEC-SSCCCEEEEEETTE------EEEEC-SSEEEEEESSSSCCCE
T ss_pred eCCCCcEEEEecCCeEEEEchHHhh-----hhcceec-CCCceEEEecCCCe------EEEEc-CCeeEEecccCCCCch
Confidence 3556663333337899999998543 2222222 34677888887764 44443 57899999964 3577
Q ss_pred EEEeCCC----ccEEEEEec--CCe-EEEEE------CCCeEEEEECC-ceeEEeecCCcCeEEEEEeCCCc---EE-EE
Q 004329 106 QTLQGHK----LQVTGVTLD--NED-IVSSS------VDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPSGE---IV-SG 167 (760)
Q Consensus 106 ~~l~~h~----~~V~~l~~~--~~~-l~sgs------~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~~---l~-tg 167 (760)
+.+..|. ..|.....+ .++ +++|- -.|.+.+|... +..+.+++|......+....+.. ++ .+
T Consensus 140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 7777654 345444554 333 33332 24668888875 55567788876655444433221 33 33
Q ss_pred EC---CCcEEEEeCCCc--------eEEee------cCCCceEEEEEeC-CCeEEEEeCCCeEEEEec-CCceEEEee
Q 004329 168 SS---DTTIKLWKGKKC--------AQTFV------GHTDTVRGLSVMP-GVGIISASHDCTIRLWAL-TGQVLMEMV 226 (760)
Q Consensus 168 s~---dg~i~iwd~~~~--------~~~~~------~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~~~ 226 (760)
.. .+.+++.+.+.. .+... ...+-..++.+++ .+.+..-+.-|.|++||+ ++.++..-+
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 33 278888886432 11111 1234456777777 444788899999999997 455555443
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.76 E-value=30 Score=35.40 Aligned_cols=223 Identities=12% Similarity=0.087 Sum_probs=119.2
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEE-------eCCCccEEEEEec-----CCeEEEEEC---
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTL-------QGHKLQVTGVTLD-----NEDIVSSSV--- 130 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-------~~h~~~V~~l~~~-----~~~l~sgs~--- 130 (760)
.....|+|.|++. .++.+...|.|++++.. +.....+ .........++++ ++.++....
T Consensus 18 ~~P~~i~~~pdG~-----~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 18 DHPWALAFLPDNH-----GMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SSEEEEEECSTTC-----CEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCcEEEEEcCCCC-----EEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 4567999999886 26667778999999853 3321111 1123456788887 355554432
Q ss_pred -----CCeEEEEECC-------ceeEEeec------CCcCeEEEEEeCCCcEEEEECC--------------CcEEEEeC
Q 004329 131 -----DSTLKRWRKG-------KLVEFWEA------HNAPIQTVIRIPSGEIVSGSSD--------------TTIKLWKG 178 (760)
Q Consensus 131 -----dg~v~vwd~~-------~~~~~~~~------~~~~v~~v~~~~~~~l~tgs~d--------------g~i~iwd~ 178 (760)
...|..|+.. .....+.. .......+.|.|+|.|+.+..| |.|.-++.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 1245555431 11111211 1122357999999996655433 45666664
Q ss_pred CCc--------------eEEeecCCCceEEEEEeC-CCeEEEEeCCC----eEEEEec---------CC-----------
Q 004329 179 KKC--------------AQTFVGHTDTVRGLSVMP-GVGIISASHDC----TIRLWAL---------TG----------- 219 (760)
Q Consensus 179 ~~~--------------~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg----~I~iwd~---------~~----------- 219 (760)
... ...+..--.....++|.| ++.+.++.... .|.+... .+
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 321 112222224477899999 67777665442 2222110 00
Q ss_pred ----------ceEEEeecCCCcEEEEEEeC-------CC-eEEEEeCCCcEEEEe--CCceEEEEe----cCCcEEEEEE
Q 004329 220 ----------QVLMEMVGHTAIVYSIDSHA-------SG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVWDAKF 275 (760)
Q Consensus 220 ----------~~~~~~~~h~~~v~~v~~~p-------~~-~l~s~s~Dg~I~iwd--~~~~~~~~~----~~~~v~~v~~ 275 (760)
.++..+ .+......+.+.. ++ ++++.-..+.|...+ .+....... ....+..+++
T Consensus 252 ~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred ccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 011111 2234567777764 35 555555666676666 333332211 2347899999
Q ss_pred ccCCcEEEEEcCCcEEEEeC
Q 004329 276 LENGDIVTACSDGVTRIWTV 295 (760)
Q Consensus 276 ~~~g~lvt~~~dg~I~vw~~ 295 (760)
.|||.++.++.++.=+||.+
T Consensus 331 ~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp CTTSCEEEEECSTTEEEEEE
T ss_pred CCCCcEEEEEeCCCCEEEEE
Confidence 99999666554333344443
No 344
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=86.49 E-value=2.6 Score=46.26 Aligned_cols=137 Identities=7% Similarity=-0.019 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHhhcCCCCcc-HHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCch-hhhhHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEE-GQSHVLSAA 692 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~-~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~-~~~~ll~~~ 692 (760)
.+..+.-++++++|+...... ...+... .++..+...+...+..+|.+++.++.|++.......... ....++..+
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKDQIQAVINA--GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 345577899999999764332 2223221 233334444444467899999999999987521110000 001233444
Q ss_pred HHHhhccccchhHHHHHHHHHhhhcchh-H-----------HHHHhhccChHHHHHHHhhcCChhHHHHHHHHHH
Q 004329 693 LEIAEEESIEVDSKYRALVAIGTLMLEG-L-----------VKKIALDFDVGNIARVAKASKETKIAEVGADIEL 755 (760)
Q Consensus 693 ~~~~~~~~~~~e~~~R~l~alGtl~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 755 (760)
..++. ..+++.....+.+|++|+..+ . ........+.-+.+..+....++.+.+.+..|+.
T Consensus 420 ~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 420 CDLLI--CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp HHGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55564 357799999999999998722 1 2333333343334455555556677777777654
No 345
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.17 E-value=31 Score=34.93 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=123.8
Q ss_pred EcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-CceE
Q 004329 27 VCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-GEKV 105 (760)
Q Consensus 27 ~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~ 105 (760)
.+|..++++--...++.|+|+++.. ..+... ....|.--.|..+.. |+..+ +..|+-|+++. ..+.
T Consensus 74 MnP~~~ViALrag~~LQiFnletK~-----klks~~-~~e~VvfWkWis~~~------L~lVT-~taVyHWs~~~~s~P~ 140 (365)
T 2xzh_A 74 MNPASKVIALKAGKTLQIFNIEMKS-----KMKAHT-MTDDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPV 140 (365)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTE-----EEEEEE-CSSCEEEEEECSSSE------EEEEE-SSEEEEEESSTTCCCE
T ss_pred eCCCccEEEEecCCeEEEechHHhh-----hhccee-cCCccEEEEecCCCe------EEEEc-CCcEEEEcccCCCCCc
Confidence 3566664443347899999998554 222222 245788888887765 44444 46799999974 3677
Q ss_pred EEEeCCC----ccEEEEEec--CCe-EEEEE------CCCeEEEEECC-ceeEEeecCCcCeEEEEEeCCC---cEEE-E
Q 004329 106 QTLQGHK----LQVTGVTLD--NED-IVSSS------VDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPSG---EIVS-G 167 (760)
Q Consensus 106 ~~l~~h~----~~V~~l~~~--~~~-l~sgs------~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~~---~l~t-g 167 (760)
+.+..|. ..|.....+ .++ +++|- -.|.+.+|..+ +..+.+++|......+....+. .+++ +
T Consensus 141 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 141 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred eeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEE
Confidence 7776654 345444555 333 33332 23667888875 5566778886655444332221 1332 2
Q ss_pred EC---CCcEEEEeCCCc---eEEe--------e---cCCCceEEEEEeC-CCeEEEEeCCCeEEEEec-CCceEEEeecC
Q 004329 168 SS---DTTIKLWKGKKC---AQTF--------V---GHTDTVRGLSVMP-GVGIISASHDCTIRLWAL-TGQVLMEMVGH 228 (760)
Q Consensus 168 s~---dg~i~iwd~~~~---~~~~--------~---~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h 228 (760)
.. .+.+++.+.+.. ...+ . ...+-.-++.+++ -+.+..-+.-|.|++||+ ++.++..-+-.
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 22 257888875432 1111 1 1234456777776 344888899999999997 56676665555
Q ss_pred CCcEEEEEEeCCC-eEEEEeCCCcEE
Q 004329 229 TAIVYSIDSHASG-LIVSGSEDRFAK 253 (760)
Q Consensus 229 ~~~v~~v~~~p~~-~l~s~s~Dg~I~ 253 (760)
...|..-+.+... -++.....|.|.
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred CCceEEecccCCCCcEEEEcCCCEEE
Confidence 5555544443332 344444555443
No 346
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.17 E-value=5.9 Score=39.74 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=63.0
Q ss_pred cchHHHHHHHHhhcCCCCcc-HHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~-~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
+..+--++.+|+|+-.+... .+.+... ..+..+...+.+.+..+|..++.++-|++.........-....++..+++
T Consensus 139 ~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 139 DTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 34466789999999876544 3344431 23444555555667889999999999998652111100011124444556
Q ss_pred HhhccccchhHHHHHHHHHhhhcch
Q 004329 695 IAEEESIEVDSKYRALVAIGTLMLE 719 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~~ 719 (760)
++.. .+++.....+-|||+|+..
T Consensus 217 LL~~--~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRT--EHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTS--CCSTHHHHHHHHHHHHHTT
T ss_pred HHcC--CChhHHHHHHHHHHHHHhC
Confidence 6653 4678999999999999983
No 347
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=85.49 E-value=35 Score=34.93 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=114.8
Q ss_pred CCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCc-cceee-eEeeCCCCCeEEEEEeCC---CCCCCCcEEEEEe-C--
Q 004329 20 DDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKR-KYHSS-KILLGHTSFVGPLAWISP---NEEFPEGGLVSGG-M-- 90 (760)
Q Consensus 20 ~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~-~~~~~-~~~~~h~~~V~~l~~~~~---~~~~~~~~l~sgs-~-- 90 (760)
..-+.|+|.|+|+ |+.+...|.|++++.+ +... ..... ............++++|+ +. .|+... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~lYv~~~~~~ 91 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-----RIWLSYSEVG 91 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-----EEEEEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCC-----EEEEEEeCCC
Confidence 4568999999999 9999999999999854 2211 01001 111223456789999996 33 244432 2
Q ss_pred -----CCeEEEEECCCC--c--eEEE-EeC------CCccEEEEEec-CCeEEEEECC--------------CeEEEEEC
Q 004329 91 -----DTMVLVWDLGSG--E--KVQT-LQG------HKLQVTGVTLD-NEDIVSSSVD--------------STLKRWRK 139 (760)
Q Consensus 91 -----dg~I~vwd~~~~--~--~~~~-l~~------h~~~V~~l~~~-~~~l~sgs~d--------------g~v~vwd~ 139 (760)
...|..|+...+ . .... +.. .......+.|. ++.|+.+..| |.|.-++.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 235666766433 1 1111 111 11123568887 5566666544 35555554
Q ss_pred Cce--------------eEEee-cCCcCeEEEEEeC-CCcEEEEECCC----cEEEEeCCC-------------------
Q 004329 140 GKL--------------VEFWE-AHNAPIQTVIRIP-SGEIVSGSSDT----TIKLWKGKK------------------- 180 (760)
Q Consensus 140 ~~~--------------~~~~~-~~~~~v~~v~~~~-~~~l~tgs~dg----~i~iwd~~~------------------- 180 (760)
... ...+. ++ ...+.++|.+ ++.+.++.... .|.+.....
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 321 11222 23 3466899999 67776654332 232211000
Q ss_pred ------------ceEEeecCCCceEEEEEeC-------CCe-EEEEeCCCeEEEEecCCc-eEEE--ee-cCCCcEEEEE
Q 004329 181 ------------CAQTFVGHTDTVRGLSVMP-------GVG-IISASHDCTIRLWALTGQ-VLME--MV-GHTAIVYSID 236 (760)
Q Consensus 181 ------------~~~~~~~h~~~V~~l~~~~-------~~~-l~s~s~dg~I~iwd~~~~-~~~~--~~-~h~~~v~~v~ 236 (760)
+...+. +...+..+.+.. ++. +++.-..+.|...++.+. .... +. .....+..++
T Consensus 251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 011111 223567778764 245 444445677777776543 2221 21 2235789999
Q ss_pred EeCCCeEE
Q 004329 237 SHASGLIV 244 (760)
Q Consensus 237 ~~p~~~l~ 244 (760)
+.|+|.|.
T Consensus 330 ~~pdG~ly 337 (353)
T 2g8s_A 330 TGPDGYLY 337 (353)
T ss_dssp ECTTSCEE
T ss_pred ECCCCcEE
Confidence 99999333
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.14 E-value=38 Score=35.07 Aligned_cols=201 Identities=8% Similarity=-0.056 Sum_probs=108.2
Q ss_pred cEEEEEeCCCeEEEEECCC-CceEEEE--eCCCccEEEEEec---CCeEEEEECCC----eEEEE-ECCceeEEeec---
Q 004329 83 GGLVSGGMDTMVLVWDLGS-GEKVQTL--QGHKLQVTGVTLD---NEDIVSSSVDS----TLKRW-RKGKLVEFWEA--- 148 (760)
Q Consensus 83 ~~l~sgs~dg~I~vwd~~~-~~~~~~l--~~h~~~V~~l~~~---~~~l~sgs~dg----~v~vw-d~~~~~~~~~~--- 148 (760)
+.|..|+..| +.+++... ++....+ ......|.+|+++ ++.+..++..| .|... |-++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence 3688888877 55554432 3222222 1234578999987 45677777666 45544 33322222211
Q ss_pred -----------CCcCeEEEEEeC---CCcEEEEECCCcEEEEeC-CCceEEeec-------------------CCCceEE
Q 004329 149 -----------HNAPIQTVIRIP---SGEIVSGSSDTTIKLWKG-KKCAQTFVG-------------------HTDTVRG 194 (760)
Q Consensus 149 -----------~~~~v~~v~~~~---~~~l~tgs~dg~i~iwd~-~~~~~~~~~-------------------h~~~V~~ 194 (760)
+...|.++++.| .+.+.++...+.|...+. +..-..+.. ....+.+
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~ 181 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS 181 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence 112477888886 355777776676666642 222222211 1235789
Q ss_pred EEEeC--CCeEEEEeCCCeEEEEecCCceEEEeec-----C--------CCcEEEEEEeCC--CeEEEEeCCCcEEEEe-
Q 004329 195 LSVMP--GVGIISASHDCTIRLWALTGQVLMEMVG-----H--------TAIVYSIDSHAS--GLIVSGSEDRFAKIWK- 256 (760)
Q Consensus 195 l~~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----h--------~~~v~~v~~~p~--~~l~s~s~Dg~I~iwd- 256 (760)
|.+.| .+.++.+..++.|...+-.++.-..+.. + ...+.++.++|. +.+..+...+ |...+
T Consensus 182 i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D 260 (394)
T 3b7f_A 182 ILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR 260 (394)
T ss_dssp EEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET
T ss_pred EEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC
Confidence 99987 2446666666656555444443333221 0 134889999987 4666666655 44444
Q ss_pred CCceEEEEe--cC----CcEEEEEEccC--CcEEEEE
Q 004329 257 DGVCVQSIE--HP----GCVWDAKFLEN--GDIVTAC 285 (760)
Q Consensus 257 ~~~~~~~~~--~~----~~v~~v~~~~~--g~lvt~~ 285 (760)
.+..-..+. .+ ..+.++++.|. +.+.++.
T Consensus 261 ~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 261 REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 444444433 12 23567888763 3365554
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.06 E-value=38 Score=35.05 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=107.7
Q ss_pred CCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCC----eEEEEECCCCceE
Q 004329 30 NVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDT----MVLVWDLGSGEKV 105 (760)
Q Consensus 30 ~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg----~I~vwd~~~~~~~ 105 (760)
++.|..|+..| +.+++...+. ..+..... ......|.+|++.|.... .+.+++..| .|...+ +.++.-
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g-~~W~~~~~-~~~~~~v~~i~~dp~~~~----~l~~g~~~g~~g~gl~~s~-D~G~tW 93 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPAR-RTWELRGP-VFLGHTIHHIVQDPREPE----RMLMAARTGHLGPTVFRSD-DGGGNW 93 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTS-CSEEEEEE-ESTTSEEEEEEECSSSTT----CEEEEEEC--CCEEEEEES-STTSCC
T ss_pred CCEEEEEecCc-eEEEECCCCC-CCceECCc-cCCCCceEEEEECCCCCC----eEEEEecCCCCCccEEEeC-CCCCCc
Confidence 44588888877 4455443211 13433221 123457999999983321 266666555 454432 333322
Q ss_pred EEEeC--------------CCccEEEEEec----CCeEEEEECCCeEEEEE-CCceeEEeec------------------
Q 004329 106 QTLQG--------------HKLQVTGVTLD----NEDIVSSSVDSTLKRWR-KGKLVEFWEA------------------ 148 (760)
Q Consensus 106 ~~l~~--------------h~~~V~~l~~~----~~~l~sgs~dg~v~vwd-~~~~~~~~~~------------------ 148 (760)
..+.. +...|.+++++ ++.++.++..+.|...+ -++.-..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 94 TEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp EECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred eECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCC
Confidence 22211 11257778886 46688877777766663 3332222211
Q ss_pred -CCcCeEEEEEeCC--CcEEEEECCCcEEEEe-CCCceEEeec-----C--------CCceEEEEEeCC--CeEEEEeCC
Q 004329 149 -HNAPIQTVIRIPS--GEIVSGSSDTTIKLWK-GKKCAQTFVG-----H--------TDTVRGLSVMPG--VGIISASHD 209 (760)
Q Consensus 149 -~~~~v~~v~~~~~--~~l~tgs~dg~i~iwd-~~~~~~~~~~-----h--------~~~V~~l~~~~~--~~l~s~s~d 209 (760)
....+.++.+.|. +.++.+..++.|...+ -++.-..+.. + ...+.++.+.|. +.++.+...
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred CCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence 1235778888873 4576666555555443 2222222211 0 134889999885 556666654
Q ss_pred CeEEEEecCCceEEEeec--CC---CcEEEEEEeCC--CeEEEE
Q 004329 210 CTIRLWALTGQVLMEMVG--HT---AIVYSIDSHAS--GLIVSG 246 (760)
Q Consensus 210 g~I~iwd~~~~~~~~~~~--h~---~~v~~v~~~p~--~~l~s~ 246 (760)
+ |...+-.++.-..+.. .. ..+.++.++|. +.+..+
T Consensus 254 g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 254 G-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp E-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred e-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 4 5555544444333321 11 35678888764 345444
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.94 E-value=18 Score=44.05 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=101.4
Q ss_pred cCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCC-CceEE
Q 004329 28 CDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGS-GEKVQ 106 (760)
Q Consensus 28 ~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~ 106 (760)
+|..++++--...++.|+|+++... .+... ....|.--.|..+.. ++..+ +..|+-|++.. ..+++
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~k-----lks~~-~~e~VvfWkWis~~~------l~lVT-~~aVyHW~~~~~s~P~k 140 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSK-----MKAHT-MTDDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPVK 140 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhh-----hcccc-cCCCceEEEecCCCe------eEEEc-CCeEEEeccCCCCccHH
Confidence 3455544444578999999985441 11111 245677788887765 44433 46799999964 34555
Q ss_pred EEeCC----CccEEEEEec--CCe-EEEEE------CCCeEEEEECC-ceeEEeecCCcCeEEEEEeCC---CcEEE-EE
Q 004329 107 TLQGH----KLQVTGVTLD--NED-IVSSS------VDSTLKRWRKG-KLVEFWEAHNAPIQTVIRIPS---GEIVS-GS 168 (760)
Q Consensus 107 ~l~~h----~~~V~~l~~~--~~~-l~sgs------~dg~v~vwd~~-~~~~~~~~~~~~v~~v~~~~~---~~l~t-gs 168 (760)
.+..| ...|..-..+ .++ +++|= -.|.+.+|... +..+.+.+|......+....+ ..+++ +.
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 55544 3344444444 333 33332 45778888775 444556677555443333221 11322 11
Q ss_pred ---CCCcEEEEeCCCc---eEEe--------ec---CCCceEEEEEeC-CCeEEEEeCCCeEEEEec-CCceEEE
Q 004329 169 ---SDTTIKLWKGKKC---AQTF--------VG---HTDTVRGLSVMP-GVGIISASHDCTIRLWAL-TGQVLME 224 (760)
Q Consensus 169 ---~dg~i~iwd~~~~---~~~~--------~~---h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~-~~~~~~~ 224 (760)
..+.+++.+++.. ...+ .. ..+-..++.+++ .+.+...+.-|.|+++|+ ++.++..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 2367888875432 1111 11 123344566666 344778889999999997 4555443
No 351
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.89 E-value=3.6 Score=45.09 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=62.2
Q ss_pred cchHHHHHHHHhhcCCCCccHH-HHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~-~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
+..+.-++|++.|+..+..... .+.. ..++..+...+.+.+..+|..++..+.|++.........-....++..+++
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 4557788999999987665432 2222 223445556667778889999999999998643221110011123344445
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.+. ..+.+.......||++|..
T Consensus 366 lL~--~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 366 VLS--KADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHH--SSCHHHHHHHHHHHHHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHHHHc
Confidence 554 3467888888999999987
No 352
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=83.83 E-value=32 Score=34.15 Aligned_cols=140 Identities=10% Similarity=0.039 Sum_probs=66.7
Q ss_pred CCe-EEEEEC----C-----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC-----CeE
Q 004329 30 NVG-IATSSR----D-----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD-----TMV 94 (760)
Q Consensus 30 ~~~-l~tgs~----D-----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d-----g~I 94 (760)
++. ++.|+. + ..+.+||+.+.. +.....+........++.+ ++. +++.|+.+ ..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~--~~~-----iyv~GG~~~~~~~~~~ 139 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ---WSPCAPMSVPRNRIGVGVI--DGH-----IYAVGGSHGCIHHNSV 139 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTE---EEECCCCSSCCBTCEEEEE--TTE-----EEEECCEETTEECCCE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCe---EeECCCCCcCccccEEEEE--CCE-----EEEEcCCCCCcccccE
Confidence 455 666655 2 467888887543 3333222222222222222 332 45565543 468
Q ss_pred EEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECC-----CeEEEEECCceeEEee----cCCcCeEEEEEeCCCc
Q 004329 95 LVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD-----STLKRWRKGKLVEFWE----AHNAPIQTVIRIPSGE 163 (760)
Q Consensus 95 ~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~----~~~~~v~~v~~~~~~~ 163 (760)
.+||+.+.+-... +........++.+++..++.|+.+ ..+.+||......... ...... ++... ++.
T Consensus 140 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~ 217 (308)
T 1zgk_A 140 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNC 217 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTE
T ss_pred EEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCE
Confidence 8899887653322 121122223333445456666654 3577888753322211 111111 22222 455
Q ss_pred -EEEEECC-----CcEEEEeCCCc
Q 004329 164 -IVSGSSD-----TTIKLWKGKKC 181 (760)
Q Consensus 164 -l~tgs~d-----g~i~iwd~~~~ 181 (760)
++.|+.+ ..+.+||..+.
T Consensus 218 iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 218 IYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCCCccceEEEEeCCCC
Confidence 4566544 45888886543
No 353
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.43 E-value=37 Score=33.54 Aligned_cols=211 Identities=8% Similarity=0.073 Sum_probs=99.5
Q ss_pred EEEEEC--CCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCC----CeEEEEECCCCceEE
Q 004329 33 IATSSR--DRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMD----TMVLVWDLGSGEKVQ 106 (760)
Q Consensus 33 l~tgs~--Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~d----g~I~vwd~~~~~~~~ 106 (760)
++.|+. ...+.+||..+.. +.....+......-.++.+ ++. +++.|+.+ ..+.+||+.+++-..
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~--~~~-----lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYS---WTDIRCPFEKRRDAACVFW--DNV-----VYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTE---EEECCCCSCCCBSCEEEEE--TTE-----EEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred EEEeCCCCCceEEEecCCCCC---EecCCCCCcccceeEEEEE--CCE-----EEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 556654 3578888887543 4333222222222222222 232 46677654 678899998875433
Q ss_pred E--EeCCCccEEEEEecCCeEEEEECC------CeEEEEECCceeEEeec----CCcCeEEEEEeCCCc-EEEEEC----
Q 004329 107 T--LQGHKLQVTGVTLDNEDIVSSSVD------STLKRWRKGKLVEFWEA----HNAPIQTVIRIPSGE-IVSGSS---- 169 (760)
Q Consensus 107 ~--l~~h~~~V~~l~~~~~~l~sgs~d------g~v~vwd~~~~~~~~~~----~~~~v~~v~~~~~~~-l~tgs~---- 169 (760)
. +........+..+++..++.|+.+ ..+.+||.......... ..... +++.. +++ ++.|+.
T Consensus 85 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEA-NGLIYVCGGSLGNN 162 (306)
T ss_dssp EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEESCT
T ss_pred CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEE-CCEEEEECCCCCCC
Confidence 2 222222223334445556667655 35778887533222111 11111 22222 455 444442
Q ss_pred -----CCcEEEEeCCCceEE-eecC--CCceEEEEEeCCCe-EEEEeCC-----CeEEEEecCCceEEEeecCC--CcEE
Q 004329 170 -----DTTIKLWKGKKCAQT-FVGH--TDTVRGLSVMPGVG-IISASHD-----CTIRLWALTGQVLMEMVGHT--AIVY 233 (760)
Q Consensus 170 -----dg~i~iwd~~~~~~~-~~~h--~~~V~~l~~~~~~~-l~s~s~d-----g~I~iwd~~~~~~~~~~~h~--~~v~ 233 (760)
-..+..||..+..-. +... ...-.+++.. +++ ++.|+.+ ..+.+||.....-..+.... ..-.
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 345778886554322 2111 1111233333 444 5666543 35788887655444332211 1112
Q ss_pred EEEEeCCCeEEEEeCC-----CcEEEEe
Q 004329 234 SIDSHASGLIVSGSED-----RFAKIWK 256 (760)
Q Consensus 234 ~v~~~p~~~l~s~s~D-----g~I~iwd 256 (760)
+++...+..++.|+.+ ..+.+||
T Consensus 242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp EEEEETTEEEEEECBCSSSBCCEEEEEE
T ss_pred eEEEECCEEEEEeCcCCCeeeeeEEEEc
Confidence 2223322266777644 4567777
No 354
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.34 E-value=11 Score=37.88 Aligned_cols=135 Identities=7% Similarity=-0.027 Sum_probs=76.6
Q ss_pred chhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCc-cHHHHHh--hHHHHHHH
Q 004329 573 PVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQK--NRSEILDA 649 (760)
Q Consensus 573 P~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~-~~~~~~~--~~~~i~~~ 649 (760)
.++|.|.-.+-+...+..+.+ .+-+..++.....+ +.+..+.-++++++|+-.+.. .++.+.. ....++.+
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~-----~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQ-----LSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHH-----TTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHH-----cCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 466666666655443333331 11233444412222 345668889999999987654 4555554 24445544
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 650 FSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 650 ~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+.+ .++..+|..++..+-|++.........-.....+..++.++. ..+.+...+.+.||++|..
T Consensus 133 L~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 133 LDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred Hcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHh
Confidence 432 235678888888888886432111000001123444455554 3578999999999999987
No 355
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=83.33 E-value=5.2 Score=43.96 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=61.9
Q ss_pred cchHHHHHHHHhhcCCCCccHH-HHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~-~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
+..+.-++|++.|+..+..... .+.. ..++..+...+.+.+..+|..++..+.|++.........-....++..++.
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhh--cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 4556778999999987665432 2322 123444555566778889999999999998643221110001123333445
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
++. ..+.++..-+..||++|..
T Consensus 385 lL~--~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 385 VLS--KADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHH--SSCHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHc
Confidence 554 3466888888899999987
No 356
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=81.53 E-value=0.91 Score=51.63 Aligned_cols=99 Identities=9% Similarity=0.102 Sum_probs=64.6
Q ss_pred chHHHHHHHHhhcCCCCccH-HHHHhh---H-HHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhh---cCCchhhhhH
Q 004329 617 ANLLTGIRAVTNLFKNSSWY-SWLQKN---R-SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE---KKDEEGQSHV 688 (760)
Q Consensus 617 ~~~ml~lR~l~N~f~~~~~~-~~~~~~---~-~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~---~~~~~~~~~l 688 (760)
..+-=++.++|||..++.++ +.+... + .+=+..+...+.+.+..+|.|++.++.|++...-. .-.+ ....
T Consensus 621 ~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~--~~~g 698 (778)
T 3opb_A 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT--KKEL 698 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--cccc
Confidence 34556899999999988874 233211 1 12255666666778889999999999999642211 1011 1123
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHhhhc
Q 004329 689 LSAALEIAEEESIEVDSKYRALVAIGTLM 717 (760)
Q Consensus 689 l~~~~~~~~~~~~~~e~~~R~l~alGtl~ 717 (760)
+..+++++....+++|..+|.++++-+|+
T Consensus 699 i~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 699 IENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34444555433367899999999999998
No 357
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.22 E-value=5.2 Score=43.89 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=60.8
Q ss_pred CcchHHHHHHHHhhcCCCC-ccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~-~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+..++++|+|+..+. ....... ...++..+...+...+..++..++..+.|++.........-....++..++
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHH--HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 3455677899999998764 2222221 233455555555566778999999999999853111000000112344455
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++. ..+++.....+-+||+|..
T Consensus 306 ~lL~--~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 306 ELLS--HESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHC--CCChhhHHHHHHHHHHHHc
Confidence 6664 2466888889999999987
No 358
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=79.98 E-value=5.2 Score=45.19 Aligned_cols=137 Identities=7% Similarity=-0.066 Sum_probs=76.7
Q ss_pred cchHHHHHHHHhhcCCCCccHHHHHhh--HHHHHHHhhhcc------------------CCCCchhHHHHHHHHHHHHhh
Q 004329 616 PANLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSCY------------------SSSNKNVQLSYSTLILNYAVL 675 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~~~~~~--~~~i~~~~~~~~------------------~~~~k~~~~a~atl~~N~s~~ 675 (760)
+..+--++.+++|+..++..++.+... ...+++.+...- ...+..++.+++..+.|++..
T Consensus 367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 455778899999999887777655432 444455443310 012245777888888888753
Q ss_pred hhhcCCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcchhHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHHH
Q 004329 676 LIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 755 (760)
Q Consensus 676 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 755 (760)
... +..-.....+..+.+++. ..+++.....+.+|++|..+.+........+.-+.+.++....++.++..+...+.
T Consensus 447 ~~~-~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~ 523 (644)
T 2z6h_A 447 VHN-RIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523 (644)
T ss_dssp HHH-HHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence 211 100001123334445554 34668888888999998875544444444443334444444455566665555443
No 359
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=79.60 E-value=24 Score=37.14 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHhhcCCCCccHH-HHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~-~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+.-+++++.|+..+..... .+.. ..++..+...+...+..+|.+++..+-|++.........-....++..++
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 34557789999999987765432 2322 13555666666667788999999999999853211100000113444455
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+.+.. .+++.....+.||+++..
T Consensus 325 ~~l~~--~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 325 SILQT--AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHHHc
Confidence 55543 467888899999999986
No 360
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=79.54 E-value=11 Score=41.10 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=64.3
Q ss_pred CcchHHHHHHHHhhcCCCC-ccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~-~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+..++++|+|+.... ..+..+... .++..+...+...+..++..++..+.|++..............++..++
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 263 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 263 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH
Confidence 3456788999999998764 345444432 2334444444445678999999999999864211112222234555556
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.++.. .+++.....+.+|++|..
T Consensus 264 ~lL~~--~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 264 KLIYS--MDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTC--CCHHHHHHHHHHHHHHHS
T ss_pred HHHcC--CCHHHHHHHHHHHHHHhC
Confidence 66653 467889999999999987
No 361
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=79.47 E-value=4.9 Score=44.20 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccc
Q 004329 621 TGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEES 700 (760)
Q Consensus 621 l~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~ 700 (760)
.++.+++|+..+......+ .....++..+...+.+.+..++..++..+.|++.........-....++..+++++. .
T Consensus 228 ~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~ 304 (529)
T 3tpo_A 228 NLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--A 304 (529)
T ss_dssp HHHHHHHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--C
T ss_pred HHHHHHHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--C
Confidence 4667888887765443222 223456666777777778889999999998887532111000001112333445554 3
Q ss_pred cchhHHHHHHHHHhhhcc
Q 004329 701 IEVDSKYRALVAIGTLML 718 (760)
Q Consensus 701 ~~~e~~~R~l~alGtl~~ 718 (760)
.+.+...-.+.|||+++.
T Consensus 305 ~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVT 322 (529)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHc
Confidence 467888889999999987
No 362
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=79.46 E-value=13 Score=38.25 Aligned_cols=190 Identities=14% Similarity=0.047 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCCCCccchhcHhhhhhcC--CCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCC
Q 004329 556 ISLLLKLLKTWPPAMIFPVIDILRMTILH--PDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS 633 (760)
Q Consensus 556 ~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~ 633 (760)
++.|.++|..=..+.+..+.-.||-+... +..-..+. . .+.+..++..+.... .+..+--+++++.|+-.+.
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~---~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--E---VGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--H---TTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--H---CCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccC
Confidence 66666666432223344455566655543 12112221 1 112333333222211 2233445678888886643
Q ss_pred -ccHHHHHhhHHHHHHHhhhccCCCCc----hhHHHHHHHHHHHHhhhhhcCC---chhhhhHHHHHHHHhhccccchhH
Q 004329 634 -SWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEKKD---EEGQSHVLSAALEIAEEESIEVDS 705 (760)
Q Consensus 634 -~~~~~~~~~~~~i~~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~e~ 705 (760)
..+..+... .-.+..+...+...+. .++..++..+.|++.+...... .-.....+..+++++.. .+.+.
T Consensus 203 ~~nk~~i~~~-~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v 279 (354)
T 3nmw_A 203 TENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTI 279 (354)
T ss_dssp HHHHHHHHHS-TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC--SCHHH
T ss_pred hhhhHHHHHh-cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC--CChHH
Confidence 344444311 1233333343333222 4777888899999974322110 00011234445566653 45688
Q ss_pred HHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHH
Q 004329 706 KYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 754 (760)
Q Consensus 706 ~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 754 (760)
....+-||++|.. +++.++.....+.-..+-.+-.+..+++++.+...+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999996 555555444444433333333355567666654443
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.75 E-value=57 Score=35.57 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=102.7
Q ss_pred ceEEEEEeCCCe--EEEEeCCCeEEEEecCC-------ce------EEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEE
Q 004329 191 TVRGLSVMPGVG--IISASHDCTIRLWALTG-------QV------LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKI 254 (760)
Q Consensus 191 ~V~~l~~~~~~~--l~s~s~dg~I~iwd~~~-------~~------~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~i 254 (760)
....+.++|+++ ++++-.+.++.++|++. +. +..-..-.-.....+|.++| ...+---|..|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 345778889887 44555688999999642 11 11111234456778999999 5556668999999
Q ss_pred Ee--C----------CceEEEEecCCcEEEEEE------ccCCc-EEEEEc---CCcE----------EEEeCCCCeeec
Q 004329 255 WK--D----------GVCVQSIEHPGCVWDAKF------LENGD-IVTACS---DGVT----------RIWTVHSDKVAD 302 (760)
Q Consensus 255 wd--~----------~~~~~~~~~~~~v~~v~~------~~~g~-lvt~~~---dg~I----------~vw~~~~~~~~~ 302 (760)
|+ . ...++.+...-.+--+.. .++|+ +++... |..+ .+.|+...++.-
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~l 483 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKL 483 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceEE
Confidence 98 1 245566653323323322 46777 555544 4433 677877666544
Q ss_pred hhhhhhhhhcccceEEeccccCceeeecCCCCceeec------cCC-CcceEEEEeeCCceEEEEEe
Q 004329 303 SLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQI------PGT-NAGQTKVVREGDNGVAYSWD 362 (760)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~l~~~~~l~~------~g~-~~g~~~~v~~~~~~~~~~w~ 362 (760)
......+.+.-....+.+.......+|++.....-.. .|. -++...++++|+...+++..
T Consensus 484 v~D~P~~~EPHda~~v~~~~i~p~~vy~~~d~~~~~a~~~~~~~gv~l~~~~~v~RdGnkV~V~Mta 550 (638)
T 3sbq_A 484 VHDGPTFAEPHDCIMARRDQIKTKKIWDRNDPFFAPTVEMAKKDGINLDTDNKVIRDGNKVRVYMTS 550 (638)
T ss_dssp EEEEEESSCCCCEEEEEGGGCCCCSSCCTTCGGGHHHHHHHHHTTCCTTTCCEEEEETTEEEEEEEE
T ss_pred EecCCCCCCCcceEEecHHHcCCcceecCCCcCChhhhhcccccCcccccccccccCCceEEEEEEE
Confidence 3333334333334455566666778898876432111 121 14467889999988888866
No 364
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=78.64 E-value=55 Score=32.46 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=46.4
Q ss_pred EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC----C-------CeEEEEECCC
Q 004329 33 IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM----D-------TMVLVWDLGS 101 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~----d-------g~I~vwd~~~ 101 (760)
++.|+ ..+.+||..+++ +.. ..+..............++. +++.|+. + ..+.+||..+
T Consensus 8 ~~~GG--~~~~~yd~~~~~---W~~-~~~~~p~~r~~~~~~~~~~~-----iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANE---CYC-ASLSSQVPKNHVSLVTKENQ-----VFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEET--TEEEEEETTTTE---EEE-EECCCCSCSSEEEEECTTCC-----EEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEcC--CceEEECCCCCe---Eec-CCCCCCCCccceEEEEECCE-----EEEEcCcccCCCCCccccccceEEecCCC
Confidence 44555 578899988554 433 22222112222222233333 5666763 1 1277889887
Q ss_pred CceEEE--EeCCCccEEEEEecCCeEEEEECC--------CeEEEEECCc
Q 004329 102 GEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD--------STLKRWRKGK 141 (760)
Q Consensus 102 ~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d--------g~v~vwd~~~ 141 (760)
++-... +...........+.+..++.|+.+ ..+.+||...
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~ 126 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLS 126 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTT
T ss_pred CeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCC
Confidence 754221 111111112223334445566532 3477778753
No 365
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=77.16 E-value=3.7 Score=44.97 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccc
Q 004329 621 TGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEES 700 (760)
Q Consensus 621 l~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~ 700 (760)
.++.+++|+..+......+ .....++..+...+.+.+..++..++..+.|++.........-....++..+++++. .
T Consensus 209 ~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~ 285 (510)
T 3ul1_B 209 NLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--A 285 (510)
T ss_dssp HHHHHHHHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--C
T ss_pred HHHHHHHHHhhcccchhHH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc--C
Confidence 4677888888766543322 223456667777777778889999999999987432111000001112333445554 3
Q ss_pred cchhHHHHHHHHHhhhcc
Q 004329 701 IEVDSKYRALVAIGTLML 718 (760)
Q Consensus 701 ~~~e~~~R~l~alGtl~~ 718 (760)
.+.+.....+.|||++..
T Consensus 286 ~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVT 303 (510)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred CChhhhhHHHHHHHHhhc
Confidence 467888899999999987
No 366
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=76.93 E-value=22 Score=38.00 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCCC-CccHHHHHhh--HHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhh
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE 678 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~ 678 (760)
+..++..+.+ ..+..+.-+++.|.|+-.+ +..+..+... ...+++.+.. +.+..++-.++..+.|+|.. ..
T Consensus 46 i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~---~~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 46 ICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR---TGNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT---CCCHHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh---CCCHHHHHHHHHHHHHHhcC-HH
Confidence 4444443332 2345578899999999775 5556555442 4454444421 45678999999999999975 22
Q ss_pred cCCchhhhhHHHHHHHHhh--------cc------ccchhHHHHHHHHHhhhcchhHHHHHhhc
Q 004329 679 KKDEEGQSHVLSAALEIAE--------EE------SIEVDSKYRALVAIGTLMLEGLVKKIALD 728 (760)
Q Consensus 679 ~~~~~~~~~ll~~~~~~~~--------~~------~~~~e~~~R~l~alGtl~~~~~~~~~~~~ 728 (760)
.+..-.. ..+..++.++. .. ..+++.+...+-||++|...++.++....
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~ 182 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1111111 33444455552 11 13556666788899999885555554443
No 367
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=76.78 E-value=37 Score=37.44 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred cchHHHHHHHHhhcCCCC-ccHHHHHh--hHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNS-SWYSWLQK--NRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAA 692 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~ 692 (760)
+..+-=+..+|.||-... .....+.. .....+..+...+.+.+..++.+++.++-|++.... .........+..+
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHH
Confidence 444556788888885443 21111111 113556777777788888999999999999987422 1111112334444
Q ss_pred HHHhhcccc------chhHHHHHHHHHhhhcc-hhHHHHHhhccCh-HHHHHHHhhc-CChhHHHHHHHHHHHh
Q 004329 693 LEIAEEESI------EVDSKYRALVAIGTLML-EGLVKKIALDFDV-GNIARVAKAS-KETKIAEVGADIELLA 757 (760)
Q Consensus 693 ~~~~~~~~~------~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~ei~~ll 757 (760)
+.+|....+ ..|++.-++-+|++|+. +++-.+.....+. +..+.-++.. ..+++.+.|.-++.-+
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 555654321 45889999999999987 4433333223332 2222222322 2557666666655433
No 368
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=75.71 E-value=25 Score=36.96 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=84.8
Q ss_pred hHHHHHHHHhcCC--CCCccchhcHhhhhhcCC-CchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCC
Q 004329 555 DISLLLKLLKTWP--PAMIFPVIDILRMTILHP-DGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFK 631 (760)
Q Consensus 555 ~~~~l~~~l~~wp--~~~~fP~lDl~Rl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~ 631 (760)
-++.+.+++ ..+ ++.++-++..++-++.+. .....+. ..+.+..++..+.+ ..+..+..++++|.|+-.
T Consensus 65 ~i~~L~~~L-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-----~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 65 VVARFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVI-----QAGAVPIFIELLSS--EFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp HHHHHHHHH-TCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH-----HTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-----hCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHcc
Confidence 355666666 333 234455666666555421 1111111 01234444443322 245668899999999987
Q ss_pred CCc-cHHHHHhhHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccccchhHHHHH
Q 004329 632 NSS-WYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRA 709 (760)
Q Consensus 632 ~~~-~~~~~~~~~~~i~~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~ 709 (760)
... .+..+.. ..++..+...+. ..+..+|..++..+.|++..............++..+++++. ..|++.....
T Consensus 137 ~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a 212 (450)
T 2jdq_A 137 DSTMCRDYVLD--CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF--VSDTDVLADA 212 (450)
T ss_dssp TCHHHHHHHHH--TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT--CCCHHHHHHH
T ss_pred CCHHHHHHHHH--CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc--cCCHHHHHHH
Confidence 653 3444433 123334444444 356789999999999998543111112222345555666664 3467888889
Q ss_pred HHHHhhhcc
Q 004329 710 LVAIGTLML 718 (760)
Q Consensus 710 l~alGtl~~ 718 (760)
+.+|++|..
T Consensus 213 ~~~L~~l~~ 221 (450)
T 2jdq_A 213 CWALSYLSD 221 (450)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHC
Confidence 999999987
No 369
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.13 E-value=17 Score=42.05 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC
Q 004329 601 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 680 (760)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 680 (760)
.+..++..+... ..+..+.-++++|.|+..+...+..+.. ..++..+...+.+.+..+|..++..+.|++......+
T Consensus 193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 344444433322 2345577889999998777665555544 2456666666667788899999999999987532211
Q ss_pred CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 681 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 681 ~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
..-.....+..+++++.. .+.+.....+-+|..|..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Confidence 100112244445566643 344554455557776665
No 370
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=74.42 E-value=8.6 Score=41.30 Aligned_cols=140 Identities=17% Similarity=0.034 Sum_probs=79.0
Q ss_pred cchHHHHHHHHhhcCCCCcc-HHHHHh-hH--HHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSW-YSWLQK-NR--SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA 691 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~-~~~~~~-~~--~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~ 691 (760)
+..+--++++|.|+-..... ...+.. .. ..++..+...+.+.+..++..+++++-|++... +...-.....+..
T Consensus 298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~ 375 (457)
T 1xm9_A 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPE 375 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHH
Confidence 44455678999999865432 111201 01 234455666667778889999999999998631 1111011123333
Q ss_pred HHHHhhccc----cchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhhcC-ChhHHHHHHHHHHHh
Q 004329 692 ALEIAEEES----IEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASK-ETKIAEVGADIELLA 757 (760)
Q Consensus 692 ~~~~~~~~~----~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ei~~ll 757 (760)
+++++.... .+.|++.-.+-+|++++. +++........+.-+.+..+..+. .+++...|..++.-+
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 455555321 134788889999999987 444333332222222333444455 678887777776544
No 371
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=73.25 E-value=1e+02 Score=32.79 Aligned_cols=64 Identities=6% Similarity=-0.045 Sum_probs=40.1
Q ss_pred ceEeEEeccCCCCEEEEEEcCCCeEEEEECCC-eEEEEeCCCCCCccceeeeEee------CCCCCeEEEEEeCC
Q 004329 9 YQLSSELRGHEDDVRGICVCDNVGIATSSRDR-TVRFWSLDPSDKRKYHSSKILL------GHTSFVGPLAWISP 76 (760)
Q Consensus 9 ~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg-~i~iWd~~~~~~~~~~~~~~~~------~h~~~V~~l~~~~~ 76 (760)
|+......+ -..-++|+|.|+|+|+.+.+.+ .|++++..++.. .....+. ........|+|+|+
T Consensus 17 f~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~---~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 17 FDKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV---KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SCEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred eEEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE---eEEecCCccccccCCCCceeEEEECCC
Confidence 444333333 3456799999999977777775 688887654431 1122221 13466789999996
No 372
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=73.24 E-value=75 Score=31.40 Aligned_cols=88 Identities=13% Similarity=-0.024 Sum_probs=42.8
Q ss_pred CeEEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEEC-C-----CeEEEEECCceeEEeec----CCcCeEEEEEe
Q 004329 92 TMVLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSV-D-----STLKRWRKGKLVEFWEA----HNAPIQTVIRI 159 (760)
Q Consensus 92 g~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~-d-----g~v~vwd~~~~~~~~~~----~~~~v~~v~~~ 159 (760)
..+.+||+.+.+-... +........++..++..++.|+. + ..+.+||.......... ..... +++..
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~ 195 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVH 195 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-EEEEE
Confidence 4588999987753221 12222222333344555666665 2 35778887633222211 11111 22222
Q ss_pred CCCc-EEEEECCC-----cEEEEeCCCc
Q 004329 160 PSGE-IVSGSSDT-----TIKLWKGKKC 181 (760)
Q Consensus 160 ~~~~-l~tgs~dg-----~i~iwd~~~~ 181 (760)
+++ ++.|+.++ .+.+||..+.
T Consensus 196 -~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 196 -DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp -TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred -CCEEEEEeccCCCCccceEEEEECCCC
Confidence 455 55666544 4777776543
No 373
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=72.93 E-value=31 Score=35.38 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=60.1
Q ss_pred chHHHHHHHHhhcCCCCc-cHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh-hhhcCCchhhhhHHHHHHH
Q 004329 617 ANLLTGIRAVTNLFKNSS-WYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 617 ~~~ml~lR~l~N~f~~~~-~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~~~~~~~~~ll~~~~~ 694 (760)
..+.-+..+|.|+-.+.. .+..+.. ..-++..+...+.+.+..++..++..+.|+|.. ....+..-.....+..+++
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 346678889999876665 3433322 123455566666677889999999999999863 1111100001112333344
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
++.. ..++++....+-||++|..
T Consensus 178 lL~~-~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 178 CALE-VKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred HHhc-CCCHHHHHHHHHHHHHHHc
Confidence 4322 2456788888889999987
No 374
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=72.79 E-value=7.6 Score=37.33 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=62.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcC-CCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLF-KNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 680 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f-~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 680 (760)
+..++..+.+....+..+..+.+.+.|+- .++..+..+... -.+..+...+.+.+..+|-.++..+.|+|.....++
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34455544433222244567788888865 455556555442 223445555666788999999999999987422221
Q ss_pred CchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 681 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 681 ~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
..-....-+..++.++.. ..+.|+......||.+|..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHc
Confidence 110011122223344432 1345666556666777755
No 375
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=72.28 E-value=1e+02 Score=34.90 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=83.4
Q ss_pred EEEEEeCC----CeEEEEECCCCceEEEE-e-------CCCccEEEEEe--cCCeEEEEECCC------eEEEEECCcee
Q 004329 84 GLVSGGMD----TMVLVWDLGSGEKVQTL-Q-------GHKLQVTGVTL--DNEDIVSSSVDS------TLKRWRKGKLV 143 (760)
Q Consensus 84 ~l~sgs~d----g~I~vwd~~~~~~~~~l-~-------~h~~~V~~l~~--~~~~l~sgs~dg------~v~vwd~~~~~ 143 (760)
+++.||.+ ..+.+||..+++....- . .....-.+..+ ++..++.|+.++ .+.+||.....
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~ 479 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence 46666643 46888998877543332 1 11122344455 444466666443 46777775432
Q ss_pred EEeec-CCc--CeEEEEEeCCCc-EEEEECCC--cEEEEeCCCceEEeec-------CCCceEEEEEeCC-Ce-EEEEeC
Q 004329 144 EFWEA-HNA--PIQTVIRIPSGE-IVSGSSDT--TIKLWKGKKCAQTFVG-------HTDTVRGLSVMPG-VG-IISASH 208 (760)
Q Consensus 144 ~~~~~-~~~--~v~~v~~~~~~~-l~tgs~dg--~i~iwd~~~~~~~~~~-------h~~~V~~l~~~~~-~~-l~s~s~ 208 (760)
..... ... .-.+.+...++. ++.|+.++ .+.+||..+..-.... ......++.+..+ +. ++.|+.
T Consensus 480 W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 480 WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 22211 111 111233323566 55666544 6888886654332211 1111223444543 44 666655
Q ss_pred --C-----CeEEEEecCCce------EEEeec---CCCcEEEEEEeCCC-eEEEEeC--------CCcEEEEe
Q 004329 209 --D-----CTIRLWALTGQV------LMEMVG---HTAIVYSIDSHASG-LIVSGSE--------DRFAKIWK 256 (760)
Q Consensus 209 --d-----g~I~iwd~~~~~------~~~~~~---h~~~v~~v~~~p~~-~l~s~s~--------Dg~I~iwd 256 (760)
+ ..+.+||+.... -..+.. ....-.+++...++ .++.||. ...+.+||
T Consensus 560 ~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 560 FMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp CTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred CCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 2 458888875443 222211 11111233344435 6666664 34588888
No 376
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=72.12 E-value=14 Score=39.48 Aligned_cols=135 Identities=14% Similarity=0.052 Sum_probs=71.8
Q ss_pred chHHHHHHHHhhcCC-CCccHHHHHhhHHHHHHHhhhccCCCCc----hhHHHHHHHHHHHHhhhhhcCCch---hhhhH
Q 004329 617 ANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEKKDEE---GQSHV 688 (760)
Q Consensus 617 ~~~ml~lR~l~N~f~-~~~~~~~~~~~~~~i~~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~~~~~---~~~~l 688 (760)
..+--+++++.|+-. ....+..+... .-.+..+...+...+. .++..++.++.|++.+........ .....
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~-~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHS-TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHh-cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 334567788888866 33444444311 1233334444333322 377788889999997432211100 01123
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhhcCChhHHHHHHHHH
Q 004329 689 LSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 754 (760)
Q Consensus 689 l~~~~~~~~~~~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 754 (760)
+..+++++.. .+.+.....+-||++|.. +++.++.....+.-..+-.+-.+..+++++.|...+
T Consensus 381 i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 381 LQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp HHHHHHHSSC--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444556643 456788889999999986 555444443334322232333355667766665544
No 377
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.26 E-value=23 Score=40.96 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=63.0
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+--++++|.|+-.+...+..+.. ...++..+...+. ..+..+|..++..+.|++..-.. +..-.....+..++
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~-~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALV 240 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHh-ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHH
Confidence 345577888999998777655544432 1234444444443 34677999999999998764211 11111123455556
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++.. .+++..+-.+.+|++|..
T Consensus 241 ~lL~~--~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 241 NMLGS--PVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTTC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHHHhC
Confidence 66653 467899999999999987
No 378
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=71.09 E-value=20 Score=40.23 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+.-++++|+|+-.+...+..+... ..++..+...+. ..+..+|.+++..+.|++.... .+..-.....+..++
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv 104 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV 104 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHH
Confidence 4566888999999998777666555432 233444444433 3467789889988889876421 111101113445555
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++.. .+++..+..+.+|++|..
T Consensus 105 ~lL~~--~~~~v~~~A~~aL~nL~~ 127 (644)
T 2z6h_A 105 KMLGS--PVDSVLFYAITTLHNLLL 127 (644)
T ss_dssp HHTTC--SSHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCHHHHHHHHHHHHHHHh
Confidence 66653 467899999999999987
No 379
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=70.36 E-value=86 Score=30.86 Aligned_cols=103 Identities=7% Similarity=-0.015 Sum_probs=49.3
Q ss_pred CCCe-EEEEECC----CeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC----C-----CeE
Q 004329 29 DNVG-IATSSRD----RTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM----D-----TMV 94 (760)
Q Consensus 29 ~~~~-l~tgs~D----g~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~----d-----g~I 94 (760)
-++. ++.|+.+ ..+.+||..+.. +.....+......- +++.. ++. +++.|+. + ..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~-~~~~~-~~~-----lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGT---WLRLADLQVPRSGL-AGCVV-GGL-----LYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTE---EEECCCCSSCCBSC-EEEEE-TTE-----EEEECCEEEETTEEEECCCE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCe---EeECCCCCcccccc-eEEEE-CCE-----EEEECCCcCCCCCCeecceE
Confidence 3444 5666632 368888887543 33332222111111 22222 232 4566655 2 468
Q ss_pred EEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEECC-----CeEEEEECCc
Q 004329 95 LVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSVD-----STLKRWRKGK 141 (760)
Q Consensus 95 ~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~d-----g~v~vwd~~~ 141 (760)
.+||+.+.+-... +........+..+++..++.|+.+ ..+.+||...
T Consensus 93 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 93 DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTT
T ss_pred EEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCC
Confidence 8999887653322 111122223333445445665543 3477777753
No 380
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.34 E-value=96 Score=30.99 Aligned_cols=138 Identities=9% Similarity=0.087 Sum_probs=79.1
Q ss_pred EeCCCcEEEEECCCcEEEEeCC---CceE-----------EeecCCCceEEEEEe----CCCeEEEEeCCCeEEEEecC-
Q 004329 158 RIPSGEIVSGSSDTTIKLWKGK---KCAQ-----------TFVGHTDTVRGLSVM----PGVGIISASHDCTIRLWALT- 218 (760)
Q Consensus 158 ~~~~~~l~tgs~dg~i~iwd~~---~~~~-----------~~~~h~~~V~~l~~~----~~~~l~s~s~dg~I~iwd~~- 218 (760)
......++..+..|.++-+... ..-+ .+. ..+.|.++... ++..++..+..|.++...+.
T Consensus 55 ~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 55 VNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD 133 (312)
T ss_dssp EETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred ECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH
Confidence 3334456677777776666421 1100 111 12344444433 34558889999999998862
Q ss_pred -------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEeC---------CceEEEEe--cCCcEEEEEEccCC
Q 004329 219 -------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKD---------GVCVQSIE--HPGCVWDAKFLENG 279 (760)
Q Consensus 219 -------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd~---------~~~~~~~~--~~~~v~~v~~~~~g 279 (760)
|.....+.. ...+..+....++ .++..+.+|.+..+.. ..-++.+. ....|.++...+++
T Consensus 134 ~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~ 212 (312)
T 1suu_A 134 FKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 212 (312)
T ss_dssp GCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC
T ss_pred hhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC
Confidence 222222333 4555555554434 7888899999888871 12233333 23466666655444
Q ss_pred c-EEEEEcCCcEEEEeCCC
Q 004329 280 D-IVTACSDGVTRIWTVHS 297 (760)
Q Consensus 280 ~-lvt~~~dg~I~vw~~~~ 297 (760)
. +++.+..|..+...++.
T Consensus 213 ~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 213 PYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp SEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEECCCceEEEEHHH
Confidence 4 88888888888777653
No 381
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=68.12 E-value=1e+02 Score=30.94 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=28.8
Q ss_pred EEEEEeC-CCeEEEEECCCC-ceEEEEeC----CCccEEEEEecCCeEEEEEC-C---------CeEEEEECCc
Q 004329 84 GLVSGGM-DTMVLVWDLGSG-EKVQTLQG----HKLQVTGVTLDNEDIVSSSV-D---------STLKRWRKGK 141 (760)
Q Consensus 84 ~l~sgs~-dg~I~vwd~~~~-~~~~~l~~----h~~~V~~l~~~~~~l~sgs~-d---------g~v~vwd~~~ 141 (760)
+++.|+. ...+.+||+.+. .....+.. ......+..+++..++.|+. + ..+.+||...
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3455553 457889998742 22222221 11222333344545666655 2 3577788754
No 382
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.92 E-value=91 Score=36.78 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.6
Q ss_pred CcEEEEEEeCCC-eEEEEeCCCcEEEEe--CCceEEEEe
Q 004329 230 AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE 265 (760)
Q Consensus 230 ~~v~~v~~~p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~ 265 (760)
..+.+++..++. ++++-+.|+++|+|+ ++.++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777777776 999999999999999 778887764
No 383
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=65.95 E-value=24 Score=40.57 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCCc-cHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhc
Q 004329 620 LTGIRAVTNLFKNSS-WYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE 698 (760)
Q Consensus 620 ml~lR~l~N~f~~~~-~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~ 698 (760)
.-+++.|+|+..++. .++.+.. .-.++.+...+.+.+..+|.+++.++.|++..-.....--.....+..++.++..
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 348899999998864 3444443 1234445555556788899999999999986321100000001234444455542
Q ss_pred cccchhHHHHHHHHHhhhcc
Q 004329 699 ESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 699 ~~~~~e~~~R~l~alGtl~~ 718 (760)
.+.+..-....||++|..
T Consensus 677 --~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 677 --EDEETATACAGALAIITS 694 (810)
T ss_dssp --SSHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhC
Confidence 466788888999999987
No 384
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=64.73 E-value=81 Score=36.57 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=73.7
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
.+..+..+++++.++..... ..+..+...++..+...+..++..+|-+++..+-+++..............++..+++
T Consensus 372 ~~~~R~aa~~alg~i~~~~~--~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTH--HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45668889999998876554 2344567888888888888888899999999999999876654333334456666666
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.+. ..+++.....+.||++++.
T Consensus 450 ~L~--d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 450 RIL--DSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCHHHHHHHHHHHHHHHH
Confidence 664 2467888889999999875
No 385
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=64.69 E-value=1.1e+02 Score=30.10 Aligned_cols=16 Identities=6% Similarity=0.515 Sum_probs=13.6
Q ss_pred eEEEEEeccccceeec
Q 004329 356 GVAYSWDMKEQKWDKL 371 (760)
Q Consensus 356 ~~~~~w~~~~~~W~~~ 371 (760)
..++.+|...++|.++
T Consensus 278 ~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 278 NDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCEEEEETTTTEEEEE
T ss_pred eeEEEEeCCCCEehhh
Confidence 3488999999999987
No 386
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.40 E-value=36 Score=36.75 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=61.8
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
.+..+.-+++++.|+-.+...+..+... ..++..+...+. +.+..+|..++..+.|++..-. .+..-.....+..++
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~ 107 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV 107 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHH
Confidence 4566888999999998877766555432 122333333332 3466789999999999875311 110001112344455
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++.. .+++..+..+.+|++|..
T Consensus 108 ~lL~~--~~~~v~~~a~~~L~~l~~ 130 (529)
T 1jdh_A 108 KMLGS--PVDSVLFYAITTLHNLLL 130 (529)
T ss_dssp HHTTC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHHHhc
Confidence 66643 467899999999999987
No 387
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=63.70 E-value=55 Score=35.20 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
.+..+..+++.|.|+..++..+..+... ..+..+...+.+.+..++..++..+.|++......+..-.....+..+++
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 3455788999999998876666655542 34555555566677889999999999998752211110011234444556
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
++.. .+.+...-.+-+|++|..
T Consensus 151 ll~~--~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 151 LLNK--TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp GGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHhc--CCHHHHHHHHHHHHHHHh
Confidence 6643 344554444557877776
No 388
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=61.19 E-value=53 Score=35.00 Aligned_cols=101 Identities=16% Similarity=0.020 Sum_probs=59.8
Q ss_pred chHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh-hhhcCCchhhhhHHHHHHHH
Q 004329 617 ANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEKKDEEGQSHVLSAALEI 695 (760)
Q Consensus 617 ~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~~~~~~~~~ll~~~~~~ 695 (760)
..+.-+..+|.|+-.+......+.....-++..+...+.+.+..++..++..+.|+|.. ....+..-.....+..++++
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 33667888999987666543333221233455566666677889999999999999863 01100000001123333444
Q ss_pred hhccccchhHHHHHHHHHhhhcc
Q 004329 696 AEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 696 ~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+.. ..++++....+-||++|..
T Consensus 295 Ll~-s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 295 ALE-VKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HTT-CCSHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCCHHHHHHHHHHHHHHcc
Confidence 332 2356777788889999987
No 389
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=60.61 E-value=1.4e+02 Score=29.66 Aligned_cols=173 Identities=7% Similarity=0.004 Sum_probs=84.3
Q ss_pred CCeEEEEECCCCceEEEEeCCCccEEEEEecCCeEEEEECC--------------CeEEEEECCc-eeEEeecCCcCeEE
Q 004329 91 DTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVD--------------STLKRWRKGK-LVEFWEAHNAPIQT 155 (760)
Q Consensus 91 dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~d--------------g~v~vwd~~~-~~~~~~~~~~~v~~ 155 (760)
++.|+..+.+.... ..+.. ..+..+...++.|+-+... ..|+..+... ....+.... .
T Consensus 36 ~~~ly~~~~dg~~~-~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--~-- 108 (302)
T 3s25_A 36 NGRLYAMNIDGSNI-HKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--C-- 108 (302)
T ss_dssp TTEEEEEETTSCSC-EEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC--E--
T ss_pred CceEEEEcCCCCCC-EEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC--c--
Confidence 56677777654333 33332 2345666678876666543 3456666542 222222221 1
Q ss_pred EEEeCCCc-EEEEE--CCCc--EEEEeCC-CceEEeecCCCceEEEEEeC-CCeEEEEe-CCCeEEEEecCCceEEEeec
Q 004329 156 VIRIPSGE-IVSGS--SDTT--IKLWKGK-KCAQTFVGHTDTVRGLSVMP-GVGIISAS-HDCTIRLWALTGQVLMEMVG 227 (760)
Q Consensus 156 v~~~~~~~-l~tgs--~dg~--i~iwd~~-~~~~~~~~h~~~V~~l~~~~-~~~l~s~s-~dg~I~iwd~~~~~~~~~~~ 227 (760)
..+++++. ++-.. .++. |+..+.. .....+..+.. ..+++ ++.++-.+ ....|.+-++.+.....+..
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 24455555 44333 3444 4444543 23344444432 23444 34454444 36788888888776655543
Q ss_pred CCCcEEEEEEeCCC-eEEEEeCCC--cEEEEe-CCceEEEEecCCcEEEEEEccCCc
Q 004329 228 HTAIVYSIDSHASG-LIVSGSEDR--FAKIWK-DGVCVQSIEHPGCVWDAKFLENGD 280 (760)
Q Consensus 228 h~~~v~~v~~~p~~-~l~s~s~Dg--~I~iwd-~~~~~~~~~~~~~v~~v~~~~~g~ 280 (760)
. ... ..++|++ .|+-...++ .|..-+ .+...+.+... .+ ..|+|++.
T Consensus 185 ~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-~~--~~~~~~g~ 235 (302)
T 3s25_A 185 C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA-NI--EHYNVYGS 235 (302)
T ss_dssp S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-CE--EEEEEETT
T ss_pred C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-Cc--ceEEECCC
Confidence 2 222 2356777 555444332 333333 44444444432 23 23677777
No 390
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=57.79 E-value=51 Score=36.32 Aligned_cols=112 Identities=14% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCC-CCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh-hhhc
Q 004329 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEK 679 (760)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~-~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~ 679 (760)
+..++..+.+ ..+..+.-+...+.|+-. +...+..+... -.+..+...+.+.+..+|..++..+.|+|.. ....
T Consensus 50 i~~LV~~L~s--~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~--G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 50 LPEVIAMLGF--RLDAVKSNAAAYLQHLCYRNDKVKTDVRKL--KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 3344444332 234556778888888864 55555555442 2345555666777899999999999999873 1221
Q ss_pred CCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 680 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 680 ~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+..-.....+..+++++... .+.|...-...||.+|..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC
Confidence 11101112233344555432 345656666667777776
No 391
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=56.75 E-value=1.6e+02 Score=29.40 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=45.1
Q ss_pred CCe-EEEEEC-CCeEEEEeCCCCCCccceeeeEee-CCCCCeEEEEEeCCCCCCCCcEEEEEeC-C---------CeEEE
Q 004329 30 NVG-IATSSR-DRTVRFWSLDPSDKRKYHSSKILL-GHTSFVGPLAWISPNEEFPEGGLVSGGM-D---------TMVLV 96 (760)
Q Consensus 30 ~~~-l~tgs~-Dg~i~iWd~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~l~sgs~-d---------g~I~v 96 (760)
+++ ++.|+. ...+.+||+.+.. ..+.....+. .....-.++. . ++. +++.|+. + ..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~-~~W~~~~~~p~~~R~~~~~~~-~-~~~-----lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKD-KKWTALAAFPGGPRDQATSAF-I-DGN-----LYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSS-CCEEECCCCTTCCCBSCEEEE-E-TTE-----EEEECCEEECTTSCEEECCCEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCC-CCeeECCCCCCCcCccceEEE-E-CCE-----EEEEcCCCCCCCccceeeccEEE
Confidence 556 555654 3568888876311 2344333332 1111222222 2 232 4556655 2 46889
Q ss_pred EECCCCceEEE--Ee-CCCccEEEEEecCCeEEEEECC
Q 004329 97 WDLGSGEKVQT--LQ-GHKLQVTGVTLDNEDIVSSSVD 131 (760)
Q Consensus 97 wd~~~~~~~~~--l~-~h~~~V~~l~~~~~~l~sgs~d 131 (760)
||+.+.+-... +. .......++..++..++.|+.+
T Consensus 91 yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 91 YNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 99987653322 11 1122233344455557777754
No 392
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=55.82 E-value=55 Score=37.10 Aligned_cols=67 Identities=7% Similarity=0.247 Sum_probs=37.0
Q ss_pred CCe-EEEEECCC--eEEEEeCCCCCCccceeeeE---eeCCCCCeEEEEEeCCCCCCCCcEEEEEeC--C-----CeEEE
Q 004329 30 NVG-IATSSRDR--TVRFWSLDPSDKRKYHSSKI---LLGHTSFVGPLAWISPNEEFPEGGLVSGGM--D-----TMVLV 96 (760)
Q Consensus 30 ~~~-l~tgs~Dg--~i~iWd~~~~~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~--d-----g~I~v 96 (760)
+++ ++.|+.++ .+.+||..+.. |..... .........++.+...... +++.|+. + +.+.+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~~~----iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVSKQ----GIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTTTE----EEEECCBCTTSSCBCCEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCCCE----EEEECCcCCCCCeeeCcEEE
Confidence 556 77777655 68899987543 433322 1111222233444444222 4666665 2 45889
Q ss_pred EECCCCc
Q 004329 97 WDLGSGE 103 (760)
Q Consensus 97 wd~~~~~ 103 (760)
||+.+.+
T Consensus 573 yd~~~~~ 579 (695)
T 2zwa_A 573 FKYDAEN 579 (695)
T ss_dssp EEECTTC
T ss_pred EEccCCc
Confidence 9998776
No 393
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=55.43 E-value=1.8e+02 Score=29.48 Aligned_cols=221 Identities=11% Similarity=0.060 Sum_probs=117.4
Q ss_pred eEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC-CCeEEEEECCCCceE--EEE----eCCCccEEEEEecC-----CeEE
Q 004329 59 KILLGHTSFVGPLAWISPNEEFPEGGLVSGGM-DTMVLVWDLGSGEKV--QTL----QGHKLQVTGVTLDN-----EDIV 126 (760)
Q Consensus 59 ~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~-dg~I~vwd~~~~~~~--~~l----~~h~~~V~~l~~~~-----~~l~ 126 (760)
..+...-.....|+|.|++. ++.+.. .|.|++++..+++.. ..+ .........|+++. +.|+
T Consensus 25 ~~va~gL~~P~~ia~~pdG~------llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGD------LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp EEEECCCSSEEEEEECTTSC------EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred EEeecCCCCceEEEEcCCCc------EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence 34444456678999999987 555555 899999987666532 222 12356678899963 4554
Q ss_pred EE-E--CCCeEEEEECCc----------eeEEee----cCCcCeEEEEEeCCCcEEEE-E-------------CCCcEEE
Q 004329 127 SS-S--VDSTLKRWRKGK----------LVEFWE----AHNAPIQTVIRIPSGEIVSG-S-------------SDTTIKL 175 (760)
Q Consensus 127 sg-s--~dg~v~vwd~~~----------~~~~~~----~~~~~v~~v~~~~~~~l~tg-s-------------~dg~i~i 175 (760)
.. + .++.|.-|.... ....+. .....-..+.|.|+|.|..+ + ..|.|.-
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 43 2 344555553221 111111 11223456899999985543 2 1345555
Q ss_pred EeCCCc---------eEEee-cCCCceEEEEEeCCCeEEEEeCCC----eEEEEec---------CC--------ceEEE
Q 004329 176 WKGKKC---------AQTFV-GHTDTVRGLSVMPGVGIISASHDC----TIRLWAL---------TG--------QVLME 224 (760)
Q Consensus 176 wd~~~~---------~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg----~I~iwd~---------~~--------~~~~~ 224 (760)
++.... ...+. +|. ....++|.|++.+.++.... .|....- .+ .++..
T Consensus 179 i~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred EeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 553321 11222 343 45688999987777765432 1222211 11 11222
Q ss_pred eecCCCcEEEEEEeCCCeEEEEeCCCcEEEEe--CCc----eEEEEe-cCCcEEEEEEccCCcEEEEEc
Q 004329 225 MVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGV----CVQSIE-HPGCVWDAKFLENGDIVTACS 286 (760)
Q Consensus 225 ~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd--~~~----~~~~~~-~~~~v~~v~~~~~g~lvt~~~ 286 (760)
+..+......++|.....++..-..+.|.... ... ....+. ..+.+..|+..|||.|..+.+
T Consensus 258 ~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 22222456777777433555544455554444 221 122222 235789999999998555443
No 394
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=55.10 E-value=62 Score=31.13 Aligned_cols=99 Identities=8% Similarity=0.019 Sum_probs=50.4
Q ss_pred cchHHHHHHHHhhcCCCCccH-HHHH-hhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSWY-SWLQ-KNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
+..+..+++++..+... .+ ..+. .+...++..+.+.+...++.|+-|+...+.++.-.............++..++
T Consensus 75 ~~v~~~A~~al~~la~~--l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 75 IQAVALAAQSVELICDK--LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 33345555555444311 11 1223 45556666666666666778888888888777765321000000223555555
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+.+... .+-.....|-+|+.++.
T Consensus 153 ~~l~~k--~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 153 EHMKHK--TPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHTTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHcCC--ChHHHHHHHHHHHHHHH
Confidence 555432 34444455555555554
No 395
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.55 E-value=49 Score=39.07 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q 004329 66 SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 66 ~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 109 (760)
..+.+++..++.. ++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~-----~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYN-----VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTT-----EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCc-----EEEEEECCCEEEEEECCCCCeEeeec
Confidence 3567777776655 68999999999999999999887654
No 396
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=51.26 E-value=15 Score=21.52 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCC
Q 004329 437 QIVEFILQNTGQKD 450 (760)
Q Consensus 437 ~i~~fi~~n~~~~~ 450 (760)
.|.+|+.+|+...+
T Consensus 10 dimdfvlkntpsmq 23 (31)
T 2agh_C 10 DIMDFVLKNTPSMQ 23 (31)
T ss_dssp HHHHHHHHHSCCCC
T ss_pred HHHHHHHhCChhHH
Confidence 69999999999765
No 397
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=44.04 E-value=1.3e+02 Score=28.60 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=42.5
Q ss_pred HhhhccCCCCc--hhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 649 AFSSCYSSSNK--NVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 649 ~~~~~~~~~~k--~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.+...+.+.+. .++..+|..+.|++......+..-.....+..+++++.. .+++......-||++|.+
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHh
Confidence 34445555555 788788888899886532221111111233444566653 567999999999999987
No 398
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=44.01 E-value=1.3e+02 Score=28.78 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCccHHHHH--hh---------HHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhh
Q 004329 619 LLTGIRAVTNLFKNSSWYSWLQ--KN---------RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSH 687 (760)
Q Consensus 619 ~ml~lR~l~N~f~~~~~~~~~~--~~---------~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ 687 (760)
-.-...++.++...+.+.-+.. .. ...+.+.+.+.+.+.|.-++.|+-+++.|+|.+.-.... ...
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i---~~~ 189 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH---LTL 189 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC---GGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH---HHH
Confidence 3456788888888655532211 11 235666677777778888999999999999986433222 112
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 688 VLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 688 ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++.+-+++.. +|++..-|.|-+|-.++.
T Consensus 190 I~~eI~elL~~--eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 190 ILDEIPSLLQN--DNEFIVELALDVLEKALS 218 (265)
T ss_dssp TTTTHHHHHTC--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 33334455543 377777777777777766
No 399
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=43.83 E-value=2.4e+02 Score=27.46 Aligned_cols=133 Identities=6% Similarity=0.020 Sum_probs=74.9
Q ss_pred CcEEEEECCCcEEEEeCCCc------eE--EeecCCCceEEEEEeC-CCeEEEEeCCCeEEEEecC----------CceE
Q 004329 162 GEIVSGSSDTTIKLWKGKKC------AQ--TFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALT----------GQVL 222 (760)
Q Consensus 162 ~~l~tgs~dg~i~iwd~~~~------~~--~~~~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~----------~~~~ 222 (760)
..++..+.+|.++....... .. .+. ..+.+..+.... +..++..++.|.+..++.. |...
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 34778888888887763221 11 111 234455544443 3458888888888887641 1122
Q ss_pred EEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe---------CCceEEEEecCCcEEEEEEcc-CCcEEEEEcCCcEE
Q 004329 223 MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---------DGVCVQSIEHPGCVWDAKFLE-NGDIVTACSDGVTR 291 (760)
Q Consensus 223 ~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd---------~~~~~~~~~~~~~v~~v~~~~-~g~lvt~~~dg~I~ 291 (760)
..+. ....|.++...+++ .++..+..|.++... .+.-+..+...+.+..+.... +..++..+.+|.+.
T Consensus 160 i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 160 IKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 2222 23456555544444 888889999988876 122233333334555444333 22377788888877
Q ss_pred E--EeCC
Q 004329 292 I--WTVH 296 (760)
Q Consensus 292 v--w~~~ 296 (760)
. ++.+
T Consensus 239 r~~~~~~ 245 (276)
T 3no0_A 239 YDKINQK 245 (276)
T ss_dssp EEEEEGG
T ss_pred EeeeCHH
Confidence 7 7654
No 400
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.48 E-value=2.5e+02 Score=27.40 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=29.6
Q ss_pred EEEEEeCC-------CeEEEEECCCCceEEE--EeCCCccEEEEEecCCeEEEEEC------CCeEEEEECCc
Q 004329 84 GLVSGGMD-------TMVLVWDLGSGEKVQT--LQGHKLQVTGVTLDNEDIVSSSV------DSTLKRWRKGK 141 (760)
Q Consensus 84 ~l~sgs~d-------g~I~vwd~~~~~~~~~--l~~h~~~V~~l~~~~~~l~sgs~------dg~v~vwd~~~ 141 (760)
+++.|+.+ ..+.+||+.+.+-... +......-.++..++..++.|+. -..+.+||...
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 46666653 3588899887654332 11111111223334444555553 23477888764
No 401
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=42.34 E-value=1.5e+02 Score=33.68 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCCCc-----cHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhh---c-CCch-hh-hh
Q 004329 619 LLTGIRAVTNLFKNSS-----WYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE---K-KDEE-GQ-SH 687 (760)
Q Consensus 619 ~ml~lR~l~N~f~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~---~-~~~~-~~-~~ 687 (760)
..=+++.|+|+.+.+. .|..+..+ ...+..+...+.+.|..+|.|++-++.|++..-.. . ...+ .+ ..
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 4579999999998873 24444442 12455566666677889999999999999963221 0 0111 11 11
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 688 VLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 688 ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
-+..++.++. .+|.++..-...||+++..
T Consensus 655 rL~lLV~Ll~--s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 655 NFNILVKLLQ--LSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc--CCCHHHHHHHHHHHHHhcC
Confidence 1333444553 3677888888888888854
No 402
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=42.18 E-value=1.5e+02 Score=27.91 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhhc
Q 004329 619 LLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE 698 (760)
Q Consensus 619 ~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~~ 698 (760)
+..+++++.-+... .+..+..+...++..+...+...+..+|-+++..+.++..... ...++..+.+.+..
T Consensus 74 ~~~a~~~l~~la~~--l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~ 144 (242)
T 2qk2_A 74 VAMAGKCLALLAKG--LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN 144 (242)
T ss_dssp HHHHHHHHHHHHHH--HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC
Confidence 34445544444421 1223445667788888888777788899999999998865321 12344444555542
Q ss_pred cccchhHHHHHHHHHhhhc
Q 004329 699 ESIEVDSKYRALVAIGTLM 717 (760)
Q Consensus 699 ~~~~~e~~~R~l~alGtl~ 717 (760)
.++.+.--++-.||.++
T Consensus 145 --~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 145 --KNPSVKSETALFIARAL 161 (242)
T ss_dssp --SCHHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHH
Confidence 24555555555566544
No 403
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=40.13 E-value=21 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHh
Q 004329 419 DAADKWLLKENLPFSYRQQIVEFILQN 445 (760)
Q Consensus 419 ~~a~~f~~~~~l~~~~~~~i~~fi~~n 445 (760)
.+-..|-.+.+++|.--+.|++||..|
T Consensus 55 naisafssrtgisqetaqkiadfitsn 81 (82)
T 3fbl_A 55 NAISAFSSRTGISQETAQKIADFITSN 81 (82)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHhcC
Confidence 355678899999999999999999877
No 404
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=36.27 E-value=4.7e+02 Score=28.71 Aligned_cols=98 Identities=9% Similarity=0.044 Sum_probs=55.7
Q ss_pred CCccchhcHhhhhhcCCCch----hhhh--hcccchhHHHHHHHHhhcC--CCCCcchHHHHHHHHhhcCCCCccHHHHH
Q 004329 569 AMIFPVIDILRMTILHPDGA----SLLL--KHVENQNDVLMEMIEKVSS--NPTLPANLLTGIRAVTNLFKNSSWYSWLQ 640 (760)
Q Consensus 569 ~~~fP~lDl~Rl~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~~~--~~~~~~~~ml~lR~l~N~f~~~~~~~~~~ 640 (760)
+..|--.++++++. .+... .|+. ...+..++.+.-++..+.. ..+++..+.+|+|++||+-. .++
T Consensus 67 d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~-- 139 (618)
T 1w63_A 67 PAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEM-- 139 (618)
T ss_dssp CCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHH--
T ss_pred CCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHH--
Confidence 45677788888876 33322 1110 0011123332222222211 23466779999999999863 122
Q ss_pred hhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh
Q 004329 641 KNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 675 (760)
Q Consensus 641 ~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~ 675 (760)
.+.++..+...+.+.+..||-+++-.++++...
T Consensus 140 --~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 140 --CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp --HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 234445555555567888999999999998754
No 405
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=35.85 E-value=3.8e+02 Score=27.57 Aligned_cols=109 Identities=6% Similarity=-0.017 Sum_probs=62.9
Q ss_pred CCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCC------c---cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeC
Q 004329 20 DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDK------R---KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGM 90 (760)
Q Consensus 20 ~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~------~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~ 90 (760)
..|..|+.... ..+.-..||.|..|-...... . ...+. .+ .....|..|+.... ..+.-..
T Consensus 75 ~~v~~va~G~~-h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v-~~~~~i~~va~G~~-------hs~al~~ 144 (423)
T 3mvd_K 75 PDAVDISAGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LI-DLPGKALCISAGDS-------HSACLLE 144 (423)
T ss_dssp SSEEEEEECSS-EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-EC-CCSSCEEEEEECSS-------EEEEEET
T ss_pred CCceEEeeCCC-eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EE-cCCCCEEEEEcCcC-------eEEEEeC
Confidence 34666665433 255667899999996542111 0 01111 11 12345666654332 3566688
Q ss_pred CCeEEEEEC--C-CCce---------EEEEeCCCccEEEEEecCCeEEEEECCCeEEEEE
Q 004329 91 DTMVLVWDL--G-SGEK---------VQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWR 138 (760)
Q Consensus 91 dg~I~vwd~--~-~~~~---------~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd 138 (760)
||.|+.|-. . .+++ ..........|..++......+.-..||.|+.|-
T Consensus 145 ~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 145 DGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVG 204 (423)
T ss_dssp TSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEee
Confidence 999999975 2 2221 1111123456788887777788888999999993
No 406
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=34.98 E-value=1.1e+02 Score=33.80 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 614 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 614 ~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
++|..+-+++|++||+-.... .+.++..+...+.+.+..||-+++..++++.-. .++.-....++..+.
T Consensus 98 ~n~~ir~~AL~~L~~i~~~~~--------~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~---~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIRVDKI--------TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI---NAQMVEDQGFLDSLR 166 (591)
T ss_dssp SSHHHHHHHHHHHHTCCSGGG--------HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCChHHH--------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh---ChhhcccccHHHHHH
Confidence 456678999999999852221 123344455555677889999999999987652 111101112344444
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
+++. ..|+.+..-++.||+.+..
T Consensus 167 ~lL~--d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 167 DLIA--DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HTTS--CSCHHHHHHHHHHHHHHTT
T ss_pred HHhC--CCChhHHHHHHHHHHHHHh
Confidence 5453 3455666666666666654
No 407
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.12 E-value=68 Score=38.77 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCCCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q 004329 68 VGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQ 109 (760)
Q Consensus 68 V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 109 (760)
+.+++..++.. ++++-+.|+++++|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~-----~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYN-----VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTT-----EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCcc-----EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34444444444 68999999999999999999887754
No 408
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.91 E-value=3.7e+02 Score=26.54 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=97.9
Q ss_pred EEEEEeCCCeEEEEECCCCce-------EE--EEeCCCccEEEEEec-CCeEEEEECCCeEEEEECC---cee-------
Q 004329 84 GLVSGGMDTMVLVWDLGSGEK-------VQ--TLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKG---KLV------- 143 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~~~-------~~--~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~---~~~------- 143 (760)
++++.+.+|.|+--.+...+. +. .++.+..-+..+..+ .+.++..+..|.++-.... ..-
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~ 89 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN 89 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CB
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC
Confidence 588889999998876643321 11 122222233333233 5668888889987776432 110
Q ss_pred ----EEeecCCcCeEEEEEeC----CCcEEEEECCCcEEEEeCCCc-------eE--EeecCCCceEEEEEeC-CCeEEE
Q 004329 144 ----EFWEAHNAPIQTVIRIP----SGEIVSGSSDTTIKLWKGKKC-------AQ--TFVGHTDTVRGLSVMP-GVGIIS 205 (760)
Q Consensus 144 ----~~~~~~~~~v~~v~~~~----~~~l~tgs~dg~i~iwd~~~~-------~~--~~~~h~~~V~~l~~~~-~~~l~s 205 (760)
..+. ....|.++...+ +..++..+..|.++....... .. .+.. .+.+..+.... +..++.
T Consensus 90 i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l 167 (312)
T 1suu_A 90 ISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVIC 167 (312)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEE
T ss_pred hhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEE
Confidence 0111 123455554443 344889999999998864321 11 1222 45555555544 556999
Q ss_pred EeCCCeEEEEecC----------CceEEEeecCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 206 ASHDCTIRLWALT----------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 206 ~s~dg~I~iwd~~----------~~~~~~~~~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
.+.+|.+..+... |.....+.. ...|.++...+++ .+++.+..|..+..+
T Consensus 168 ~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 168 LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred EeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 9999999998752 112222222 4456666554444 788889999888886
No 409
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=29.83 E-value=4.3e+02 Score=26.33 Aligned_cols=216 Identities=11% Similarity=0.037 Sum_probs=112.8
Q ss_pred EEEEECCCeEEEEeCCCCCCc----cceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEEEeCCCeEEEEE---CCC----
Q 004329 33 IATSSRDRTVRFWSLDPSDKR----KYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWD---LGS---- 101 (760)
Q Consensus 33 l~tgs~Dg~i~iWd~~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~sgs~dg~I~vwd---~~~---- 101 (760)
+++.+.+|.|+--.+.+-... .-.....+. ....+..+......+ .++.-+..|.++-.. +..
T Consensus 6 ~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d-----~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 6 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHD-----LILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp EEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTS-----EEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred EEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCC-----EEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 788888998886653210000 000011111 234455444444433 366667777766543 322
Q ss_pred --CceEEE---EeCCCccEEEE-Eec----CCeEEEEECCCeEEEEECCc-------ee--EEeecCCcCeEEE-EEeCC
Q 004329 102 --GEKVQT---LQGHKLQVTGV-TLD----NEDIVSSSVDSTLKRWRKGK-------LV--EFWEAHNAPIQTV-IRIPS 161 (760)
Q Consensus 102 --~~~~~~---l~~h~~~V~~l-~~~----~~~l~sgs~dg~v~vwd~~~-------~~--~~~~~~~~~v~~v-~~~~~ 161 (760)
|.++.. +. ....|.++ ... +..++..+.+|.++.-.... .. ..++. .+.+..+ ....+
T Consensus 80 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 80 ARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG 157 (327)
T ss_dssp SCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT
T ss_pred CCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC
Confidence 222111 12 23445554 333 45699999999999885431 11 12222 3344444 33444
Q ss_pred CcEEEEECCCcEEEEeCC--Cc---------eEEee-cCCCceEEEEEeC-CCeEEEEeCCCeEEEEecCC--------c
Q 004329 162 GEIVSGSSDTTIKLWKGK--KC---------AQTFV-GHTDTVRGLSVMP-GVGIISASHDCTIRLWALTG--------Q 220 (760)
Q Consensus 162 ~~l~tgs~dg~i~iwd~~--~~---------~~~~~-~h~~~V~~l~~~~-~~~l~s~s~dg~I~iwd~~~--------~ 220 (760)
..++..+..|.+..+... .. .+.+. ...+.|.++...+ +..++..+..|.++.-.+.. .
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC
Confidence 558889999998888654 21 11111 1234566665554 45699999999999887521 1
Q ss_pred eEEEee--cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe
Q 004329 221 VLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 256 (760)
Q Consensus 221 ~~~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd 256 (760)
-+..+. .-.+.+..+....+. .++..+.+|.+.-++
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEE
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEe
Confidence 122221 213345444443333 666667777766665
No 410
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=29.56 E-value=5.2e+02 Score=27.20 Aligned_cols=109 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred eeEEeecCCcCeEEEEEeCCCc--EEEEECCCcEEEEeCCCce---------EEeecC-----CCceEEEEEeCC----C
Q 004329 142 LVEFWEAHNAPIQTVIRIPSGE--IVSGSSDTTIKLWKGKKCA---------QTFVGH-----TDTVRGLSVMPG----V 201 (760)
Q Consensus 142 ~~~~~~~~~~~v~~v~~~~~~~--l~tgs~dg~i~iwd~~~~~---------~~~~~h-----~~~V~~l~~~~~----~ 201 (760)
.+..+...-...+.+++.|++. ++++...|.|++++..... ..+..- ......|+++|+ +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Q ss_pred e-EEEEeCCC------------eEEEEecC-----------CceEEEee--cCCCcEEEEEEeCCC-eEEEEeCCC
Q 004329 202 G-IISASHDC------------TIRLWALT-----------GQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDR 250 (760)
Q Consensus 202 ~-l~s~s~dg------------~I~iwd~~-----------~~~~~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg 250 (760)
. +++-+.+. .|.-|.++ .+.+..+. ........|.|.|+| +.++.+..+
T Consensus 85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
No 411
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.70 E-value=72 Score=38.57 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=29.0
Q ss_pred cEEEEEEccCCc-EEEEEcCCcEEEEeCCCCeeechhhh
Q 004329 269 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 269 ~v~~v~~~~~g~-lvt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
.+.+++..++.. +++-|.|+++|+|++.+++++.+..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445555566666 77999999999999999988776554
No 412
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=25.59 E-value=1e+02 Score=29.61 Aligned_cols=74 Identities=7% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCC--chhh-hhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 643 RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKD--EEGQ-SHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 643 ~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~--~~~~-~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.+.+++.+...+.+.|..+|.++.+++-.+.-....... .... ..++..+.+.+. ..++|+.-...-+||+++.
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 455666666777766778998888887776643221100 0112 345555556664 3466777777777777764
No 413
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.23 E-value=6.8e+02 Score=27.15 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=97.6
Q ss_pred eEEEEECCCCceE--EEEeC-------------CCccEEEEEecCC-eEEEEE----CCCeEEEEECCceeEEeecCCcC
Q 004329 93 MVLVWDLGSGEKV--QTLQG-------------HKLQVTGVTLDNE-DIVSSS----VDSTLKRWRKGKLVEFWEAHNAP 152 (760)
Q Consensus 93 ~I~vwd~~~~~~~--~~l~~-------------h~~~V~~l~~~~~-~l~sgs----~dg~v~vwd~~~~~~~~~~~~~~ 152 (760)
.+..||...+++. ..+.. |.-.|-.+.-++. .|+.|+ .||++ +|..+ .+|...
T Consensus 293 ~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~------~gHGDa 365 (591)
T 2zux_A 293 MLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG------LGHGDA 365 (591)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS------CCCCSC
T ss_pred EEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC------CCCCCe
Confidence 4888998877653 33332 3333333333322 255544 33333 34332 278888
Q ss_pred eEEEEEeCCCc---EEEEECCC----cEEEEeCCC--ceEEeec--CCCceEEEEEeCC---CeEEEEeCCCeEEEEecC
Q 004329 153 IQTVIRIPSGE---IVSGSSDT----TIKLWKGKK--CAQTFVG--HTDTVRGLSVMPG---VGIISASHDCTIRLWALT 218 (760)
Q Consensus 153 v~~v~~~~~~~---l~tgs~dg----~i~iwd~~~--~~~~~~~--h~~~V~~l~~~~~---~~l~s~s~dg~I~iwd~~ 218 (760)
+....+.|+.. ++.+..++ -..+.|..+ .+..... +.+....-.+.|+ -.+.+ ++ .+|+.+
T Consensus 366 ~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~ 440 (591)
T 2zux_A 366 LHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK 440 (591)
T ss_dssp EEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT
T ss_pred eEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC
Confidence 87778888742 66666542 244566433 3333322 2344444445553 33554 23 578888
Q ss_pred CceEEEeecCCCcEEEEEEeCCC--eEEEEeCCCcEEEEe--CCceEEEEecC----------CcEEEEEEccCCc--EE
Q 004329 219 GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHP----------GCVWDAKFLENGD--IV 282 (760)
Q Consensus 219 ~~~~~~~~~h~~~v~~v~~~p~~--~l~s~s~Dg~I~iwd--~~~~~~~~~~~----------~~v~~v~~~~~g~--lv 282 (760)
|+.+..... ...-..+-|..+. .++- .+.|.-|+ .++....+..+ .+..+..+.-|.+ ++
T Consensus 441 G~~i~~~~p-~~~N~~i~WdGDl~relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI 516 (591)
T 2zux_A 441 GVKIGSGVP-SSTNFGIWWDGDLLREQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVV 516 (591)
T ss_dssp SCBCSSCCC-SCCSEEECCSSSSSCEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEE
T ss_pred CCEecCCCC-CCcceeEEECCCCcHhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEE
Confidence 876653211 1222356677666 4443 23688888 44433333321 1334445555655 66
Q ss_pred EEEc-CCcEEEEeCCC
Q 004329 283 TACS-DGVTRIWTVHS 297 (760)
Q Consensus 283 t~~~-dg~I~vw~~~~ 297 (760)
..+. +..+|||....
T Consensus 517 ~~t~D~~~LrIYtt~~ 532 (591)
T 2zux_A 517 WRTEDSSALRIYTTTI 532 (591)
T ss_dssp EEETTSSEEEEECCCC
T ss_pred EEeCCCCeEEEEeCCC
Confidence 5555 45799998754
No 414
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=25.23 E-value=83 Score=35.52 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhh
Q 004329 603 MEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 675 (760)
Q Consensus 603 ~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~ 675 (760)
..++..+.+ +.+.-+..++..++|+...+..++.+.. ..-|...+...+..++..||.+++.++=|++..
T Consensus 37 ~Pll~~L~S--~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 37 LPVLKDLKS--PDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHHSS--SCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 344444332 2456689999999999987777776654 223334456667777889999999999999865
No 415
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=24.79 E-value=6e+02 Score=27.91 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=36.5
Q ss_pred CCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhcc--CCCCchhHHHHHHHHHHHHhh
Q 004329 614 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCY--SSSNKNVQLSYSTLILNYAVL 675 (760)
Q Consensus 614 ~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~--~~~~k~~~~a~atl~~N~s~~ 675 (760)
++|..+-+|||++||+-. .. ..+.++..+...+ ...+..||-.++-.++++.-.
T Consensus 123 ~n~~ir~lALr~L~~i~~----~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGS----RE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC----HH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCC----HH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 356668899999999843 11 2234444455555 566778998888888887653
No 416
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=23.12 E-value=6.2e+02 Score=25.89 Aligned_cols=212 Identities=7% Similarity=-0.041 Sum_probs=115.5
Q ss_pred EEEEEeCCCeEEEEECCCC-c-----------e-EEEEeCCCccEEEEEecCCeEEEEECCCeEEEEEC--Cc--e----
Q 004329 84 GLVSGGMDTMVLVWDLGSG-E-----------K-VQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRK--GK--L---- 142 (760)
Q Consensus 84 ~l~sgs~dg~I~vwd~~~~-~-----------~-~~~l~~h~~~V~~l~~~~~~l~sgs~dg~v~vwd~--~~--~---- 142 (760)
+.+.-..||.|+.|-.... + . ...+. ....|..++......+.-..||.|..|-. +. .
T Consensus 86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~ 164 (423)
T 3mvd_K 86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT 164 (423)
T ss_dssp EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESB
T ss_pred eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcC
Confidence 3667788999999965321 1 0 11111 23467778777777778889999999953 21 0
Q ss_pred ------eEEeecCCcCeEEEEEeCCCcEEEEECCCcEEEEeCCC-------------------------ceEEeecCCCc
Q 004329 143 ------VEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK-------------------------CAQTFVGHTDT 191 (760)
Q Consensus 143 ------~~~~~~~~~~v~~v~~~~~~~l~tgs~dg~i~iwd~~~-------------------------~~~~~~~h~~~ 191 (760)
..........|..++... ...++-..+|.|+.|-... +..........
T Consensus 165 ~~~~~~~p~~~~~~~~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~ 243 (423)
T 3mvd_K 165 IDGNKRTPIDLMEGTVCCSIASGA-DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243 (423)
T ss_dssp TTBCEEEEEESSTTCCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCC
T ss_pred CCCCCceeeEecCCCcEEEEecCC-CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCcc
Confidence 011111233455555432 3355667889999994211 11111112234
Q ss_pred eEEEEEeCCCeEEEEeCCCeEEEEecC--C----------ceEEEeecCCCcEEEEEEeCCCeEEEEeCCCcEEEEeCC-
Q 004329 192 VRGLSVMPGVGIISASHDCTIRLWALT--G----------QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDG- 258 (760)
Q Consensus 192 V~~l~~~~~~~l~s~s~dg~I~iwd~~--~----------~~~~~~~~h~~~v~~v~~~p~~~l~s~s~Dg~I~iwd~~- 258 (760)
|..++......++.-..||.|..|-.. + ............|..|+.-.. ..+.-..||.|+.|=.+
T Consensus 244 v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~-ht~alt~~G~v~~wG~n~ 322 (423)
T 3mvd_K 244 FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH-HTVILTTDLKCSVVGRPE 322 (423)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS-EEEEEETTCCEEEEECCG
T ss_pred EEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC-eEEEEeCCCcEEEEECCC
Confidence 566655433334444689999999531 1 011111111345666654333 55666789999999511
Q ss_pred ----------c-eE--EEEe-cCCcEEEEEEccCCcEEEEEcCCcEEEEeCCCCe
Q 004329 259 ----------V-CV--QSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 299 (760)
Q Consensus 259 ----------~-~~--~~~~-~~~~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~ 299 (760)
. .. ..+. ....|..|+.... ..++...||.|+.|-....-
T Consensus 323 ~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~-hs~alt~~G~v~~wG~n~~G 376 (423)
T 3mvd_K 323 YGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV-CSYAVTIDGKLYSWGSGVNN 376 (423)
T ss_dssp GGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT-EEEEEETTSCEEEEECCTTS
T ss_pred CCCCCCCCccccccCceEeccCCCCEEEEEcCCC-eEEEEcCCCCEEEECCCCCC
Confidence 1 11 1112 2225777775433 34555789999999876543
No 417
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.06 E-value=1.8e+02 Score=32.71 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=25.5
Q ss_pred cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhh
Q 004329 269 CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLEL 306 (760)
Q Consensus 269 ~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~ 306 (760)
.|.++.+ ++..+++-|.|.++|+|++.+++++....+
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3444443 333478888888888888888887776665
No 418
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.10 E-value=3.8e+02 Score=23.75 Aligned_cols=79 Identities=6% Similarity=-0.036 Sum_probs=49.8
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 694 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~ 694 (760)
.+..+..+++.|.++-.. ..+..+...+..++..+|.+++..+-++.- .+.+..+.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~ 145 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIK 145 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHH
Confidence 455678888888875321 122333344456677899999888877631 123334445
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
++. ..+++.....+.|||.+-.
T Consensus 146 ~l~--d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 146 ALK--DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HTT--CSSHHHHHHHHHHHHHHCS
T ss_pred HHc--CCCHHHHHHHHHHHHHhCc
Confidence 554 3467888889999998754
No 419
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=22.06 E-value=6.4e+02 Score=28.54 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=64.0
Q ss_pred cchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC-CchhhhhHHHHHHH
Q 004329 616 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAALE 694 (760)
Q Consensus 616 ~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~ll~~~~~ 694 (760)
...+-.+++++.++..... ...+..+.+.++..+...+..++..+|.+++-.+-+++......- .......++..+++
T Consensus 383 ~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 383 WRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 4557778888888875432 234456677788888777777788999998888888887765421 12223345555555
Q ss_pred HhhccccchhHHHHHHHHHhhhcc
Q 004329 695 IAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 695 ~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
.+.. +++.....+.||++++.
T Consensus 462 ~l~~---~~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQD---HPKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTS---CHHHHHHHHHHHHHHHH
T ss_pred Hhcc---ChHHHHHHHHHHHHHHH
Confidence 5532 25666666677766653
No 420
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=21.40 E-value=5.6e+02 Score=29.10 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcC-CchhhhhHHHHHH
Q 004329 615 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAAL 693 (760)
Q Consensus 615 ~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~ll~~~~ 693 (760)
.+..+..+++++.++..... ...+..+..+++..+...+..++..+|.+++..+-+++-...... .......++..++
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~-~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 457 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH
Confidence 45567888888888775433 123345567778777777777788899999999999987755421 1223334555555
Q ss_pred HHhhccccchhHHHHHHHHHhhhcc
Q 004329 694 EIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
..+.. ++....+++.||++++.
T Consensus 458 ~~l~~---~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 458 EGLSA---EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHTTS---CHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHHH
Confidence 55532 35566666777777664
No 421
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=20.92 E-value=3.2e+02 Score=22.50 Aligned_cols=78 Identities=10% Similarity=-0.063 Sum_probs=46.8
Q ss_pred CCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHH
Q 004329 614 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 693 (760)
Q Consensus 614 ~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~ 693 (760)
..+..+..+++.|.++-. . .....++. .+..++..||.+++..+-++.- .+.+..+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~----~----~a~~~L~~----~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~ 110 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD----E----RAVEPLIK----LLEDDSGFVRSGAARSLEQIGG-----------ERVRAAME 110 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS----H----HHHHHHHH----HHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC----H----HHHHHHHH----HHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHH
Confidence 345668889999988642 1 11222333 3334577899888888877641 12333344
Q ss_pred HHhhccccchhHHHHHHHHHhhh
Q 004329 694 EIAEEESIEVDSKYRALVAIGTL 716 (760)
Q Consensus 694 ~~~~~~~~~~e~~~R~l~alGtl 716 (760)
+.+. ..++++......|||.+
T Consensus 111 ~~l~--d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 111 KLAE--TGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHTT--SCCTHHHHHHHHHGGGC
T ss_pred HHHh--CCCHHHHHHHHHHHHhC
Confidence 5553 35667888888888754
No 422
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.84 E-value=5.5e+02 Score=24.43 Aligned_cols=98 Identities=9% Similarity=0.074 Sum_probs=54.1
Q ss_pred CCeEEEEeCCCeEEEEec--------CCceEEEee--cCCCcEEEEEEeCCC-eEEEEeCCCcEEEEe-------CCceE
Q 004329 200 GVGIISASHDCTIRLWAL--------TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-------DGVCV 261 (760)
Q Consensus 200 ~~~l~s~s~dg~I~iwd~--------~~~~~~~~~--~h~~~v~~v~~~p~~-~l~s~s~Dg~I~iwd-------~~~~~ 261 (760)
...++..++.|.++-+.. .|..+.... .....|.++....++ .++.++..|.++... ...-.
T Consensus 44 ~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~ 123 (256)
T 1zvt_A 44 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGK 123 (256)
T ss_dssp TSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCE
T ss_pred CCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCce
Confidence 444666777777665542 122111110 123456655443334 788889999999886 11122
Q ss_pred EEEe--cCCcEEEEEEc--cCCcEEEEEcCCcEEEEeCCC
Q 004329 262 QSIE--HPGCVWDAKFL--ENGDIVTACSDGVTRIWTVHS 297 (760)
Q Consensus 262 ~~~~--~~~~v~~v~~~--~~g~lvt~~~dg~I~vw~~~~ 297 (760)
..+. ..+.+..+... .+..++..+.+|.+..|..+.
T Consensus 124 ~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 124 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp ECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 2222 23455555554 233488899999988887753
No 423
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.72 E-value=5e+02 Score=23.96 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhc-
Q 004329 601 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK- 679 (760)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~- 679 (760)
++..++....+ + .+..+--+..++.+++.+.. .+.+++.+...+...+..+|..+..++-.+.......
T Consensus 99 ilp~ll~~l~d-~-~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 99 CVPSLLEKFKE-K-KPNVVTALREAIDAIYASTS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHGGGC-C-CHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcC-C-CHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 45555554333 2 23333344444444444322 3456666666666677889999999888754332111
Q ss_pred CCchhhhhHHHHHHHHhhccccchhHHHHHHHHHhhhcc
Q 004329 680 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 718 (760)
Q Consensus 680 ~~~~~~~~ll~~~~~~~~~~~~~~e~~~R~l~alGtl~~ 718 (760)
........++..+.+.+. ..++|..-...-++|.++.
T Consensus 169 ~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence 111222345555555553 3456666666777777665
Done!