BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004334
(760 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/598 (43%), Positives = 383/598 (64%), Gaps = 59/598 (9%)
Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
RW+R YS +R ++IWGFVLT +++ WLN +K+SY GG TEEK RR+ AKW++E+
Sbjct: 33 RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91
Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
+L LGPTFIK+GQ FSTR D+ EYV+ELS+LQD+VP F E A I+EEELG P+ +
Sbjct: 92 LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151
Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
+ FD P+AAASLGQVH+A+L GE+VVVKVQRPGLK LF IDL L+ IA+Y Q P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210
Query: 352 KSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYTTPQI 405
K G RDW IY+EC +L+Q E +A+ F NF+ D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269
Query: 406 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 465
LT+EY+PGIKI+ +L+ G++RK L + +YL Q+L+HGFFHADPHPGN+AV
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328
Query: 466 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 525
G LIFYDFGMMG I+P+ + L++ +G+ EK+A++++ ++V +G L T D +RR+
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRS 388
Query: 526 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 585
QF L++F + KP ++Q + I +DL IA DQP
Sbjct: 389 VQFLLDNFMD-------------------KPF--------EEQSITKISDDLYEIAYDQP 421
Query: 586 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK----FREAGVEVILKDF 641
FRFPATFTFV+RAFS L+G+GKGLDP F+ +A+P+A++++ F AG +
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAG------NI 475
Query: 642 RNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVG 701
+ RQ N R ++ +++ RL++GD+++RVR+ E++R +R+ +Q
Sbjct: 476 MDELGRQAVQVGNSALGLPR--RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTN 533
Query: 702 SAVGAGSLVNLATILYLNSIRVPA---ILAYVSCAFFGFQVLFGIIKVKKLDQREKLI 756
+ +LV AT+L++N+ + A +L + AF +++L K+L++++++
Sbjct: 534 YVLFTCALVLSATLLFVNNYFMAAAVVLLMSLVPAFALWRLL------KRLERQDRMF 585
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/536 (35%), Positives = 307/536 (57%), Gaps = 55/536 (10%)
Query: 192 FVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRV 251
F+L F +W +T + RR A+WL + +L LGPTFIKIGQ STR
Sbjct: 33 FLLFVFFLSW---------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRA 83
Query: 252 DILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHR 311
DI+ EY++ ++LQD+VPPF S A++++E+EL +D++F++F+V P+A+ASLGQVHR
Sbjct: 84 DIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHR 143
Query: 312 ARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECA 368
A L GE VVVKVQRPGL L ++D + L ++ P + K + AIY E
Sbjct: 144 AVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFF 203
Query: 369 SVLY------QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL 422
S+L+ E NAE F NF D V+VP I+W+YTT +LT+EY+PGIK++ Q+L
Sbjct: 204 SLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQAL 263
Query: 423 DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP 482
+ G++ + + + +YL+Q+L GFF +DPHPGN+AVD + G LIFYDFG M +
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKI 321
Query: 483 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRK 542
++ +++ F+ + KD ++VL+A++ MG++ P GD + ++R F L++F +
Sbjct: 322 IAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------- 374
Query: 543 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 602
KP+ I+ Q +GE++ A+ QPFR P TF++++ S L
Sbjct: 375 ------------KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTL 414
Query: 603 DGIGKGLDPRFDITEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 660
DGI + LDPR+++ ++P+ ++ + + + + +L+ + A L R +
Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSR 468
Query: 661 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATIL 716
+ L E +LE+G+L+ R+ E +R +++ K++ A G + AT+L
Sbjct: 469 NQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 278/531 (52%), Gaps = 64/531 (12%)
Query: 143 KKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWL 202
K +E++G F +S + ++ + + R + + R + I +L F+ W
Sbjct: 34 KSHLEDLGPVSDMFPESWEYHPDLIM----EFYRKRPLQVLGRLINILFPLLRFILGIWW 89
Query: 203 NNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDEL 262
RG ++ V R KA+ L+E + LGPT+IK+GQ STR D++ ++DEL
Sbjct: 90 EK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDEL 140
Query: 263 SELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVV 321
+ LQDQ+P FP+E A +EEELGAP ++++ EPIAAASLGQV++ +LK GE V V
Sbjct: 141 TTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAV 200
Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL------YQEA 375
KVQRP L +D+ +R ++ + ++ + D VAI DE AS + YQEA
Sbjct: 201 KVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEA 257
Query: 376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 435
N E FA + + + VP+I+W+YT ++LTME+V GIK+ I+++ G+D L
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317
Query: 436 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 495
V+ L Q+L HGFFHADPHPGN+ + GRL + DFGMM +I P R GL+EA +
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHL 375
Query: 496 YEKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFK 554
+D D + + V++ L P D + Q F N+ +A EL FK
Sbjct: 376 VNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK 424
Query: 555 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 614
+I + + A+ + PFR PA + ++R+ L+GI G+DP F
Sbjct: 425 -----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFK 467
Query: 615 ITEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 659
+ A PY + L + R + E++ K+ RW+R NL R A
Sbjct: 468 VLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 263 bits (672), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 162/492 (32%), Positives = 248/492 (50%), Gaps = 59/492 (11%)
Query: 172 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 228
+ R + + + R LE+ +GF LT + Q Y+ E+
Sbjct: 25 ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E + +LGPTFIK+GQ STR D++ +++++EL +LQDQ+PPF ++ A ++EE+LG
Sbjct: 73 LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+D+ + P+AAASLGQV+RA L GEEV VKVQRP L+ +DL +R+ A+
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYT 401
+ P + G D I DE L++ E NAE FA NF VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250
Query: 402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 461
++LT+E++ G K+ + G+D + R V S L Q+L HGFFHADPHPGN+
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310
Query: 462 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA 521
GR+ + DFGMM + P +E + + + KD + + + +G L P D T
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368
Query: 522 VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIA 581
+ + N F + + Q+ FK I +D +
Sbjct: 369 IIPALE---NVFGSAIGQ-------SVQDFNFK-----------------TITDDFSELM 401
Query: 582 ADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVE 635
D PFR PA F ++R+ +G+ LDP F I E+A PY L + R ++
Sbjct: 402 YDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLID 461
Query: 636 VILKDFRNRWDR 647
V+ K+ + +W R
Sbjct: 462 VLFKNGKFQWQR 473
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 251/499 (50%), Gaps = 61/499 (12%)
Query: 178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 237
+ + ++R+LEI G + F + ++ ++ + M + LRR RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158
Query: 238 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 297
PTF+K+GQ STR D+ +Y++EL+ELQD +P FP A + +E EL L+ +F
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218
Query: 298 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 355
EPIAAASLGQV++A+L+ G+ V VKVQRPG+++ +D +R + + + K D
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275
Query: 356 AKRDWVAIYDECASVLY------QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 409
D + + DE A +Y QEA NA F + D V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335
Query: 410 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 468
+V G K+N +++ G+ L ++ L Q+L +GFFHADPHPGN +A D G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392
Query: 469 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF 528
L F DFGMM R ++ + +D + + + + L P D T + +
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452
Query: 529 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 588
F F++ L T EL FK + + L A+ PF
Sbjct: 453 F---FDDAL-------NYTVSELNFK-----------------TLVDGLGAVFYQYPFNV 485
Query: 589 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY-AMELLK-----FREAGVEVILKDFR 642
P + ++R+ +VL+G+ DP F + + PY A LL R+A +E++ KD +
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGK 545
Query: 643 NRWDRQTRAFYNLFRQADR 661
RW+R NL +Q +
Sbjct: 546 FRWNR----LENLLQQGSK 560
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 226/429 (52%), Gaps = 54/429 (12%)
Query: 207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
FSY G+ + L R K A L++ ++ LGP ++KI Q S+R D++ Y+DE
Sbjct: 96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155
Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
LS LQDQ+ PF +E A +++E+ELG P+D++F EP+AAASLGQV++ARL+ G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215
Query: 320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------ 373
VKVQRPG++ +D LR IA ++ K+ D A+ DE A+ L++
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271
Query: 374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 433
EA N F + + V VP ++ EY+T ++L ME+V G K+N + L L
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323
Query: 434 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 493
V Q+L +GF+HADPHPGN G+L + DFGMMG P +R+G +EA
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381
Query: 494 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 553
+ +D + + V +G+L PT + +AV + + F++ A R R I+ +L
Sbjct: 382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL-- 434
Query: 554 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 613
L +G+ + FR P F+ V+R+ +VL+GI G+ P +
Sbjct: 435 ----------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNY 474
Query: 614 DITEIAKPY 622
+ P+
Sbjct: 475 KVLGSTYPW 483
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 161/508 (31%), Positives = 243/508 (47%), Gaps = 62/508 (12%)
Query: 156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
F+K E V V SR S + R +EI W L + + + + G
Sbjct: 110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRD 159
Query: 215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
EE R A+ L+ + LGP+FIK GQ + R DI+ ++Y++EL LQD VPPFP+
Sbjct: 160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215
Query: 275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
E A +I+EEELG PL+++F + + IAAASLGQV+RA L+ GE+V +KVQRP ++ +
Sbjct: 216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275
Query: 333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFK 386
DL R +A +L + G + I DE L + EA N E F NFK
Sbjct: 276 YRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFK 333
Query: 387 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 446
D VK+P ++ P++L ME++ GI+ Q++ + G+D V + L Q+L
Sbjct: 334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393
Query: 447 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
G FH DPHPGNI A+ D GR+ + DFG + +S ++ L++A +D ++
Sbjct: 394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450
Query: 506 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 565
++G L D + + + + + A R +T Q F K
Sbjct: 451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK---------- 497
Query: 566 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 625
+ D P R P F+ V+R+ +GI L P F E+A PY +
Sbjct: 498 --------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 543
Query: 626 LL------KFREAGVEVILKDFRNRWDR 647
L RE ++V+ KD +W R
Sbjct: 544 RLLTDPNPALRERLIQVLFKDGVFQWKR 571
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 49/402 (12%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP F+K GQ STR D+L EY DEL+ LQD+VPPF + A +VE LG ++++F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 296 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
FD++P+A+AS+ QVH+A L+ G EV VKV RPG+ + + DL +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 350 DPKSDGAK---RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
+DG + R+ VA +D+ + EAANA NFK D + VP +F++Y++
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236
Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
++LT+E++ GI + +I+ L E GVD ++L R+ VE + Q+ HGFFHAD HPGNI V
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294
Query: 464 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 523
GR I DFG++GS++ + L F + +D +V A ++ G VP DT A
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA-- 350
Query: 524 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI-AA 582
EE AA R T E F+KPLS+ + G LL +
Sbjct: 351 ----------EELEAAVR-----TVCEPIFEKPLSE-----------ISFGMVLLRLFET 384
Query: 583 DQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 622
+ F V+ ++L+ G+G+ LDP D+ + AKP+
Sbjct: 385 SRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+L KG+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
DT +A+R + +F + ++ Q R +T S+ +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398
Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
L + + +L + +G+G+ LDP D+ + AKPY +E
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434
Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
+ G+ + F+ + ++ L R + R DL ++ L +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492
Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
R+ G AVGAG+++ RV +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 219 bits (557), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 222/412 (53%), Gaps = 52/412 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + DEL++LQDQVPPF S A+ +VE LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP ++
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMY 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRL 570
T +A+R + +F + ++ Q R +T S+ +E + Q L
Sbjct: 350 TTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ-L 399
Query: 571 AAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + +L + +G+G+ LDP D+ + AKPY
Sbjct: 400 VLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/412 (33%), Positives = 223/412 (54%), Gaps = 52/412 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + +EL++LQDQVPPF S A+ +VE+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP ++
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMY 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G + P
Sbjct: 290 NIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 516 TGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRL 570
T +A+R + +F + ++ Q R +T S+ +E + Q L
Sbjct: 350 TTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ-L 399
Query: 571 AAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + +L + +G+G+ LDP D+ + AKPY
Sbjct: 400 VLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 211/407 (51%), Gaps = 46/407 (11%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVI----- 342
+ +VF RFDVEP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++
Sbjct: 119 ISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 343 -----AEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
A L +D SD K IYDE L +EAANA NF+ + VP ++
Sbjct: 179 KVSADARLLHPVDVVSDYEK----TIYDELD--LLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V VN + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 293 NIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP 351
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A+ LN FE AA R T E F+KPL K +
Sbjct: 352 ----------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 385
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L A + + ++G+G+ L P D+ A+P+
Sbjct: 386 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/412 (33%), Positives = 221/412 (53%), Gaps = 52/412 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + EL++LQDQVPPF S A++I+E+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A LK G++V VKV RP + + D DL LR IA
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+ +++ +DG + R+ VA +D+ L +EAAN NF +D + VP ++
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMY 229
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
WEY T +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 230 WEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V D + GR I DFG++G++S + L + F +++D +V ++ G +
Sbjct: 290 NIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPA 349
Query: 516 TGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRL 570
T +A+R + +F + ++ Q R +T S+ +E + Q L
Sbjct: 350 TTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ-L 399
Query: 571 AAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + +L + +G+G+ LDP D+ + AKPY
Sbjct: 400 VLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 210/407 (51%), Gaps = 46/407 (11%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V+++E +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVI----- 342
+ DVF RFD+EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++
Sbjct: 119 ISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 343 -----AEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
A L +D SD K IYDE L +EAANA NF+ + VP ++
Sbjct: 179 KLSADARLLHPVDVVSDYEK----TIYDELD--LLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V V + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 293 NIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP 351
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A+ LN FE AA R T E F+KPL K +
Sbjct: 352 ----------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 385
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L A + + ++G+G+ L P D+ A+P+
Sbjct: 386 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 204/396 (51%), Gaps = 38/396 (9%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD +P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +
Sbjct: 126 FDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERVSADAR 185
Query: 355 GAKRDWV------AIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
V IYDE L +EAANA NF+ D + VP ++W++ P++L M
Sbjct: 186 LLHPVQVVMDYEKTIYDELD--LLREAANASQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 466
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 467 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 526
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 527 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 586
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 587 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPY 432
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 203/396 (51%), Gaps = 38/396 (9%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERVSADAR 185
Query: 355 GAKRDWV------AIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
V IYDE L +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 186 LLHPVQVVMDYEKTIYDELD--LLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 466
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 467 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 526
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 527 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 586
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 587 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPY 432
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 211/407 (51%), Gaps = 46/407 (11%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ ++ ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVI----- 342
+ +VF RFDV+P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++
Sbjct: 119 ISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFILARAAE 178
Query: 343 -----AEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
A L +D +D K IYDE L +EAANA NF+ + VP ++
Sbjct: 179 RFSADARLLHPVDVVADYEK----TIYDELD--LLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + G+++ + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 233 WDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V VN + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 293 NIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP 351
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A+ LN FE AA R T E F+KPL K +
Sbjct: 352 ----------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 385
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L A + + ++G+G+ L P D+ A+P+
Sbjct: 386 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 228/467 (48%), Gaps = 65/467 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ D K IYDE L +EAANA NF+D + + VP ++
Sbjct: 180 RASADARRLHPVEIVGDYEK----TIYDELD--LLREAANASQLRRNFEDSELMYVPQVY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+ P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V V + I D G++GS++ ++ L + +++D +V Q + G VP
Sbjct: 294 NIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
+N FE AA R T E F+KPL K +
Sbjct: 353 ANTK----------VNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 386
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVE 635
L A + + ++G+G+ L P D+ AKPY ++ R +
Sbjct: 387 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERWMRDRYSPKA 446
Query: 636 VILKDFRNRWDRQTRAFYNLFRQADRVEKLA----ETIQRLEQGDLK 678
V F NL Q +++ LA + ++RL Q L
Sbjct: 447 V---------------FGNLHSQVEQLPHLAGMTRDLLERLSQPHLH 478
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 230/466 (49%), Gaps = 65/466 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ D K IYDE L +EAANA NF+ + + VP ++
Sbjct: 180 RASADARRLHPVEIVGDYEK----TIYDELD--LLREAANASQLRRNFEGSELMYVPQVY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+ P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V V + I D G++GS++ ++ L +++D +V Q + G VP
Sbjct: 294 NIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
AQ +N FE AA R T E F+KPL K +
Sbjct: 353 ----------AQTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 386
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVE 635
L A + + ++G+G+ L P D+ AKP+ ++ R +
Sbjct: 387 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLERWMRERMSPKA 446
Query: 636 VILKDFRNRWDRQTRAFYNLFRQADRVEKLAET----IQRLEQGDL 677
VI NL+ QA+++ LA+ ++RL Q L
Sbjct: 447 VI---------------GNLYNQAEQLPHLADMTRDLLERLSQPHL 477
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 204/396 (51%), Gaps = 38/396 (9%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A++++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILARMAERVSADAR 185
Query: 355 GAKRDWV------AIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
V IYDE L +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 186 LLHPVQVVMDYEKTIYDELD--LLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 466
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWS 303
Query: 467 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 526
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 527 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 586
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 587 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPY 432
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 229/471 (48%), Gaps = 73/471 (15%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++E +LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAE--- 344
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 345 -------YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ D K IYDE L +EAANA NF+ + + VP ++
Sbjct: 179 RASADARRLHPVEIVGDYEK----TIYDELD--LLREAANASQLRRNFEGSELMYVPQVY 232
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+ P++L ME + G+ + + +L + D K L VE + Q+ H FFHAD HPG
Sbjct: 233 WDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPG 292
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V V + I D G++GS++ ++ L +++D +V + + G VP
Sbjct: 293 NIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSG-WVP 351
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A +N FE AA R T E F+KPL K +
Sbjct: 352 ----------AHTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 385
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVE 635
L A + + ++G+G+ L P D+ AKP
Sbjct: 386 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKP-------------- 431
Query: 636 VILKDFRNRWDRQTRA----FYNLFRQADRVEKLA----ETIQRLEQGDLK 678
F RW R+ + F NL+ QA+++ LA + ++RL Q L
Sbjct: 432 -----FLERWMRERYSPKAMFGNLYSQAEQLPHLAGMTRDLLERLSQPHLH 477
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 217/423 (51%), Gaps = 62/423 (14%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL+ LQD+VPPF + +V+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
+D+ F RFD EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L + A
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L +D SD K IYDE L +EAANA NF+ + VP I+
Sbjct: 180 RASTEARRLHLVDVVSDYEK----TIYDELD--LLREAANASQLKRNFEGSPLLYVPQIY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + G+ + + +L + G D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V + I D G++GS++P ++ L +++D KV Q + G VP
Sbjct: 294 NIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
DT +N FE AA R T E F+KPL + G+
Sbjct: 353 -ADTQ---------VNEFE---AAIR-----TVCEPIFEKPLKD-----------ISFGQ 383
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPYAMELL 627
LL + F+ F V+ VL +G+G+ L P D+ AKP+ +
Sbjct: 384 LLLRL-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWM 438
Query: 628 KFR 630
+ R
Sbjct: 439 RKR 441
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 214/415 (51%), Gaps = 58/415 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ +LGP F+K GQ STR D+L + DEL++LQD+VPPF + A +IVE LG P
Sbjct: 53 LRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
L +F RFD P+A+AS+ QVH A L+ G EV VKV RPG+ + D DL +R +A
Sbjct: 113 LSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+++K+ +DG + R+ VA +D+ L +EAANA NF + + VP +F
Sbjct: 173 TWMEKL--WADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEVF 230
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ T ++ ME + G++++ L GVD +L R VE + Q+ GFFHAD HPG
Sbjct: 231 WDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPG 290
Query: 458 NI--AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI +V + GR I DFG++G++S + L + F +++D +V V+ G
Sbjct: 291 NILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGW--- 347
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
+ T V EE A R E F +PL GE
Sbjct: 348 APEETRV-----------EELEGAIR-----ACCEPYFDRPL----------------GE 375
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPY 622
L + + F+ F V+ VL +G+G+ LDP D+ + AKP+
Sbjct: 376 ISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPF 430
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 134/406 (33%), Positives = 215/406 (52%), Gaps = 44/406 (10%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ RLGP F+K GQ STR D++ + +EL++LQD+VPPFPS+ + + V + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+++VF FD +P+A+AS+ QVH L G EV VKV RP + ++ + DL LRV A +L+
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 348 KIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIFWEYT 401
++ P DG + R+ VA +D L +EAANA N +D + +P + W+ +
Sbjct: 173 RLSP--DGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLS 230
Query: 402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 461
+ ++L ME + G+ I++I++L G+D +L R V + Q+ GFFHAD HPGNI V
Sbjct: 231 SAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMV 290
Query: 462 DDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 519
GR I DFG++G++ +E L + F + +D +V + ++ G VP
Sbjct: 291 STAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESG-WVPAS-- 347
Query: 520 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 579
+E A R E F +PL ++G+ LL
Sbjct: 348 -----------TRVDELEGAVR-----AVCEPHFDRPLKD-----------ISLGQVLLR 380
Query: 580 I-AADQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 622
+ + F V+ ++L+ G+G+ LDP D+ + AKP+
Sbjct: 381 LFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPF 426
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 208/405 (51%), Gaps = 38/405 (9%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ RLGP F+K GQ STR D+L + DEL+ LQD+VPPFPS A++ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ DVF +FD PIA+AS+ QVH A ++ + EV VKV RP ++ + + DL + ++A
Sbjct: 113 VGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMA 172
Query: 344 EYLQKIDPKSDGAK-RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIFWE 399
+++K+ P K R+ V +D+ L +EAANA N ++ V +P +FW+
Sbjct: 173 GWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWD 232
Query: 400 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI 459
+ P+++ ME + G+ I ++ L GVD +L R V + Q+ GFFHAD HPGNI
Sbjct: 233 FCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNI 292
Query: 460 AVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG 517
V GR I DFG++G+++ + +E L + F + +D +V + ++ G VP G
Sbjct: 293 QVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESG-WVPEG 351
Query: 518 DTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDL 577
+E A R T E F +PL K+ L + L
Sbjct: 352 -------------TRIDELEGAIR-----TVCEPYFDRPL--------KEISLGMVLMRL 385
Query: 578 LAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
+ + + ++G+G+ LDP D+ AKP+
Sbjct: 386 FQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPF 430
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 229/438 (52%), Gaps = 39/438 (8%)
Query: 213 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 272
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 331
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE+V VKV RP L +
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPV 157
Query: 332 FDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNF 385
+ DL +R A +++++ +DG + R+ VA +D+ L +EAANA NF
Sbjct: 158 IEQDLSLMRFGAGWVERL--FADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNF 215
Query: 386 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 445
++ D + VP +F++Y T +LT+E++ G ++ I L G+D +L Y VE + Q+
Sbjct: 216 QNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +V
Sbjct: 276 RDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVAT 333
Query: 506 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 565
A ++ G VP DT A EE AA R E F KP+S+
Sbjct: 334 AHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKPISQIS---- 370
Query: 566 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 625
+ L ++ + + ++G+G+ LDP D+ + AKP+ ++
Sbjct: 371 ----FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
Query: 626 LLKFREAGVEVILKDFRN 643
+ + G + + ++ +N
Sbjct: 427 WMN-GQVGPKALWRNLKN 443
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 206/407 (50%), Gaps = 46/407 (11%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ D K IYDE L +EAANA NF+ + + VP ++
Sbjct: 180 RASADARRLHPVEIVGDYEK----TIYDELD--LLREAANASQLRRNFEGSELMYVPQVY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+ P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V V + I D G++GS++ ++ L +++D +V Q + G VP
Sbjct: 294 NIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A +N FE AA R T E F+KPL K +
Sbjct: 353 ----------AHTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLM 386
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L A + + ++G+G+ L P D+ AKP+
Sbjct: 387 RLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPF 433
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 162/506 (32%), Positives = 248/506 (49%), Gaps = 66/506 (13%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + + L +LQD+VPPFPSE A I+E+ LGAP
Sbjct: 55 LRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ ++F F +P+A+AS+ QVH A L G++VVVKV RPG++ + DL + ++A L+
Sbjct: 115 VSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLE 174
Query: 348 K-------IDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY 400
K + P A D I+DE L +EAANA NF++ + +P I W+Y
Sbjct: 175 KYWSEGKRLHPVEVVADYD-STIHDELD--LQREAANASQLRRNFENSPLIYIPFIDWDY 231
Query: 401 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 460
T +L ME + GI I + +L++ GV+ + L VE + Q+ FFHAD HPGNI
Sbjct: 232 TRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIF 291
Query: 461 VDDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD 518
VD N + I DFG++G+++P+ + L + +D +V Q +Q G + P
Sbjct: 292 VDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETR 351
Query: 519 TTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLL 578
+N FE AA R T E F++PL + G LL
Sbjct: 352 -----------VNEFE---AAIR-----TVCEPIFERPLKD-----------ISFGHFLL 381
Query: 579 AIAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPYAMELLKFR 630
+ F+ F V+ VL +G+G+ L P D+ A+P+ + ++ R
Sbjct: 382 RL-----FQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFLEDWMRKR 436
Query: 631 EAGVEVILKDFRNR---WDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKL-RVRTLES 686
G ++K +N W Q+ L A + + + + L L + + L S
Sbjct: 437 -IGPSGLIKSLQNHLPSWLEQSPEMPQLVHDALLQIRSSGPTEAQNRATLALMKEQQLRS 495
Query: 687 ERAFQR-----VAAVQKTVGSAVGAG 707
ER ++R V A VGS AG
Sbjct: 496 ERRWRRGFIALVLAGAALVGSQPHAG 521
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 248/523 (47%), Gaps = 63/523 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA I+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L G EVVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAKRDWVAIYDECASV----LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
P +D + + E L +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRPCEIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAE 234
Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
Q+LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI VD
Sbjct: 235 QVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDS 294
Query: 464 ----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 519
+ R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 295 DPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH--- 351
Query: 520 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 579
VR EE AA R + E F +PLS+ LA + L
Sbjct: 352 --VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVLMKLFH 387
Query: 580 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 639
+A + + ++G+G+ LDP DI +A+P +L+ R + LK
Sbjct: 388 VARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRARYSPRHA-LK 446
Query: 640 DFRNRWDRQTRAFYNLFRQADRVEKLAET--IQRLE---QGDLKL-RVRTLE-SERAFQR 692
+ R + A +L T +Q++E Q D+ L ++R L + + QR
Sbjct: 447 ELNKR-------LPEIMTHAPDTPRLIHTWLVQQVESRKQNDVYLQQIRALAMTLQGLQR 499
Query: 693 VAAVQKTVGSAVGAGSLVNLATI-------LYLNSIRVPAILA 728
+ V + VG+G LV A + LYL +I V ++++
Sbjct: 500 -----RVVNAIVGSGLLVAAAVLYGLHPDGLYLGAIPVWSLIS 537
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 251/523 (47%), Gaps = 63/523 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
P +D + R+ VA + + L +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAE 234
Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI VD
Sbjct: 235 RVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDS 294
Query: 464 ----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 519
+ R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 295 DPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH--- 351
Query: 520 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 579
VR EE AA R + E F +PLS+ LA + L
Sbjct: 352 --VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMKLFH 387
Query: 580 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 639
+A + + ++G+G+ LDP DI +A+P +L+ R + LK
Sbjct: 388 VARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRARYSPRHA-LK 446
Query: 640 DFRNRWDRQTRAFYNLFRQADRVEKLAET--IQRLE---QGDLKL-RVRTLE-SERAFQR 692
+ R + A +L T +Q++E Q D+ L ++R L + + QR
Sbjct: 447 ELNKR-------LPEIMTHAPDTPRLIHTWLVQQVESRKQNDVYLQQIRALAMTLQGLQR 499
Query: 693 VAAVQKTVGSAVGAGSLVNLATI-------LYLNSIRVPAILA 728
+ V + VG+G LV A + LYL +I V ++++
Sbjct: 500 -----RVVNAIVGSGLLVAAAVLYGLHPDGLYLGTIPVWSLIS 537
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 251/523 (47%), Gaps = 63/523 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
P +D + R+ VA + + L +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAE 234
Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI VD
Sbjct: 235 RVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDS 294
Query: 464 ----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 519
+ R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 295 DPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH--- 351
Query: 520 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 579
VR EE AA R + E F +PLS+ LA + L
Sbjct: 352 --VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMKLFH 387
Query: 580 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 639
+A + + ++G+G+ LDP DI +A+P +L+ R + LK
Sbjct: 388 VARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRARYSPRHA-LK 446
Query: 640 DFRNRWDRQTRAFYNLFRQADRVEKLAET--IQRLE---QGDLKL-RVRTLE-SERAFQR 692
+ R + A +L T +Q++E Q D+ L ++R L + + QR
Sbjct: 447 ELNKR-------LPEIMTHAPDTPRLIHTWLVQQVESRKQNDVYLQQIRALAMTLQGLQR 499
Query: 693 VAAVQKTVGSAVGAGSLVNLATI-------LYLNSIRVPAILA 728
+ V + VG+G LV A + LYL +I V ++++
Sbjct: 500 -----RVVNAIVGSGLLVAAAVLYGLHPDGLYLGTIPVWSLIS 537
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 223/438 (50%), Gaps = 39/438 (8%)
Query: 213 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 272
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 331
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE V VKV RP L L
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPL 157
Query: 332 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY------QEAANAELFASNF 385
+ DL +R A +++++ SDG + + + E L+ +EAANA NF
Sbjct: 158 IEQDLSLMRFGAAWVERL--FSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNF 215
Query: 386 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 445
+ + + VP +F++Y T +LT+E++ G + I L G+D +L Y VE + Q+
Sbjct: 216 HNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +V
Sbjct: 276 RDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVAT 333
Query: 506 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 565
A ++ G VP DT A EE AA R E F KP+S+
Sbjct: 334 AHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKPISQIS---- 370
Query: 566 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 625
+ L ++ + + ++G+G+ LDP D+ + AKP+ ++
Sbjct: 371 ----FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
Query: 626 LLKFREAGVEVILKDFRN 643
+ + G + + ++ +N
Sbjct: 427 WMN-GQVGPKALWRNLKN 443
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 210/407 (51%), Gaps = 42/407 (10%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+++ + +DG + R+ VA +D L +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ ++L ME + G+ IN+++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 458 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V GR I DFG++G+++ +E L + F + +D +V + ++ G VP
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESG-WVP 349
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A +N E AA R T E F +PL K+ L +
Sbjct: 350 ----------AHTRVNELE---AAIR-----TVCEPYFDRPL--------KEISLGMVLL 383
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPF 430
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 209/407 (51%), Gaps = 42/407 (10%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+++ + +DG + R+ VA +D L +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ ++L ME + G+ IN++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 458 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V GR I DFG++G+++ +E L + F + +D +V + ++ G VP
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESG-WVP 349
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A +N E AA R T E F +PL K+ L +
Sbjct: 350 ----------AHTRVNELE---AAIR-----TVCEPYFDRPL--------KEISLGMVLL 383
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPF 430
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 229/460 (49%), Gaps = 77/460 (16%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL+ LQDQVPPFP + A++++E +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
+ +F RFD +P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L+ ++ SD K I+DE L +EAANA NF+ + VP ++
Sbjct: 179 RASADARRLRPVEVVSDYEK----TIFDELD--LLREAANASQLRRNFEGSPLLYVPQVY 232
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W+ Q+L ME + G+ + + +L + D K L VE + Q+ FFHAD HPG
Sbjct: 233 WDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V + I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 293 NIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP 351
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
DT +N FE AA R T E F+KPL + G+
Sbjct: 352 -ADTK---------VNEFE---AAIR-----TVCEPIFEKPLKD-----------ISFGQ 382
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPYAMELL 627
LL + F+ F V+ VL +G+G+ L P D+ A+P+ +
Sbjct: 383 LLLRL-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFLERWM 437
Query: 628 KFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 667
+ R + + ++ NL +QA++V L++
Sbjct: 438 RERVSPLHLL---------------RNLQQQAEQVPHLSQ 462
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 199 bits (507), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 209/407 (51%), Gaps = 42/407 (10%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ RLGP F+K GQ STR D+L + +EL+ LQD+VPPF + AV+ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF F+ P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIF 397
+++ + +DG + R VA +D L +EAANA N + + V++P I
Sbjct: 173 GWVESL--SADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEIL 230
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + G+ I++I+ L GVD ++L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 458 NIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V G GR I DFG++GS++ +E L + F + +D +V + V+ G VP
Sbjct: 291 NIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESG-WVP 349
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
DT +N E + A E F +PL K+ L +
Sbjct: 350 -ADTR---------INELESAIRA--------VCEPYFDRPL--------KEISLGMVLM 383
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPF 430
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 251/523 (47%), Gaps = 63/523 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA I+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L EVVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
P +D + R+ VA + + L +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAE 234
Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI VD
Sbjct: 235 RVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDS 294
Query: 464 ----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 519
+ R I DFG+MG +S + L E F I+ KD ++ + V+ G +P
Sbjct: 295 DPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAG-WIPQH-- 351
Query: 520 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 579
VR EE AA R + E F +PLS+ LA + L
Sbjct: 352 --VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVLMKLFH 387
Query: 580 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 639
+A + + ++G+G+ LDP DI +A+P +L+ R + LK
Sbjct: 388 VARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRARYSPRHA-LK 446
Query: 640 DFRNRWDRQTRAFYNLFRQADRVEKLAET--IQRLE---QGDLKL-RVRTLE-SERAFQR 692
+ R + A +L T +Q++E Q D+ L ++R L + + QR
Sbjct: 447 ELNKR-------LPEIMTHAPDTPRLIHTWLVQQVESRKQNDVYLQQIRALAMTLQGLQR 499
Query: 693 VAAVQKTVGSAVGAGSLVNLATI-------LYLNSIRVPAILA 728
+ V + VG+G LV A + LYL +I V ++++
Sbjct: 500 -----RVVNAIVGSGLLVAAAVLYGLHPDGLYLGTIPVWSLIS 537
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 153/504 (30%), Positives = 241/504 (47%), Gaps = 50/504 (9%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ + +EL+ LQD+V PF E A IVE LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE------EVVVKVQRPGLKDLFDIDLKNLRVI 342
+ F FD P+A+AS+ QVH A L + EVVVKV RP ++ D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 343 AEYLQKIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFW 398
A +++ P++D + R+ VA + S L +E ANA + ++ D + VP + W
Sbjct: 175 ATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVPEVIW 234
Query: 399 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN 458
+T + LT+E V GI + + LD G+DRK L V + Q+ FFHAD H GN
Sbjct: 235 SHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGN 294
Query: 459 IAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV 514
I VD R I DFG+MG +S + L E F I+ KD ++ + V+ G +
Sbjct: 295 IWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWM- 353
Query: 515 PTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG 574
+ VR +E AA R + E F +PLS+ LA +
Sbjct: 354 ----PSNVR---------IDELEAAAR-----SVCEPYFTRPLSEIS--------LAEVL 387
Query: 575 EDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGV 634
L +A + + ++G+G+ LDP+ DI +A+P +L+ R +
Sbjct: 388 IKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERYSPR 447
Query: 635 EVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET-IQRLEQGDLKLRVRTLESERAFQRV 693
V L + R R + A + +L + +++ +G +L +R+ E +
Sbjct: 448 RV-LGELRKR-------LPEIMTHAPDMPRLVHSWLKQQVEGRHQLDIRSSELRALDLSL 499
Query: 694 AAVQKTVGSAVGAGSLVNLATILY 717
+Q V +A+ L+ +A +LY
Sbjct: 500 RKLQTRVVTAITGSGLLVVAAVLY 523
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 242/504 (48%), Gaps = 50/504 (9%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ + +EL+ LQD+V PF E A IVE LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE------EVVVKVQRPGLKDLFDIDLKNLRVI 342
+ F FD P+A+AS+ QVH A L + EVVVKV RP ++ D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 343 AEYLQKIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFW 398
A +++ P++D + R+ VA + S L +E ANA + ++ D + VP + W
Sbjct: 175 ATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVPEVIW 234
Query: 399 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN 458
+T + LT+E V GI + + LD G+DRK L V + Q+ FFHAD H GN
Sbjct: 235 SHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGN 294
Query: 459 IAVDDVNGGRL----IFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV 514
I VD RL I DFG+MG +S + L E F I+ KD ++ + V+ G +
Sbjct: 295 IWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWM- 353
Query: 515 PTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG 574
+ VR +E AA R + E F +PLS+ LA +
Sbjct: 354 ----PSNVR---------IDELEAAAR-----SVCEPYFTRPLSEIS--------LAEVL 387
Query: 575 EDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGV 634
L +A + + ++G+G+ LDP+ DI +A+P +L+ R +
Sbjct: 388 IKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERYSPR 447
Query: 635 EVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET-IQRLEQGDLKLRVRTLESERAFQRV 693
V L + R R + A + +L + +++ +G +L +R+ E +
Sbjct: 448 RV-LGELRKR-------LPEIMTHAPDMPRLVHSWLKQQVEGRHQLDIRSSELRALDLSL 499
Query: 694 AAVQKTVGSAVGAGSLVNLATILY 717
+Q V +A+ L+ +A +LY
Sbjct: 500 RKLQTRVVTAITGSGLLVVAAVLY 523
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 242/504 (48%), Gaps = 50/504 (9%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ + +EL+ LQD+V PF E A IVE LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE------EVVVKVQRPGLKDLFDIDLKNLRVI 342
+ F FD P+A+AS+ QVH A L + EVVVKV RP ++ D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 343 AEYLQKIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFW 398
A +++ P++D + R+ VA + S L +E ANA + ++ D + VP + W
Sbjct: 175 ATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVPEVIW 234
Query: 399 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN 458
+T + LT+E V GI + + LD G+DRK L V + Q+ FFHAD H GN
Sbjct: 235 SHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGN 294
Query: 459 IAVDDVNGGRL----IFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV 514
I VD RL I DFG+MG +S + L E F I+ KD ++ + V+ G +
Sbjct: 295 IWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWM- 353
Query: 515 PTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG 574
+ VR +E AA R + E F +PLS+ LA +
Sbjct: 354 ----PSNVR---------IDELEAAAR-----SVCEPYFTRPLSEIS--------LAEVL 387
Query: 575 EDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGV 634
L +A + + ++G+G+ LDP+ DI +A+P +L+ R +
Sbjct: 388 IKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERYSPR 447
Query: 635 EVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET-IQRLEQGDLKLRVRTLESERAFQRV 693
V L + R R + A + +L + +++ +G +L +R+ E +
Sbjct: 448 RV-LGELRKR-------LPEIMTHAPDMPRLVHSWLKQQVEGRHQLDIRSSELRALDLSL 499
Query: 694 AAVQKTVGSAVGAGSLVNLATILY 717
+Q V +A+ L+ +A +LY
Sbjct: 500 RKLQTRVVTAITGSGLLVVAAVLY 523
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 225/460 (48%), Gaps = 59/460 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ SD K I DE L +EAANA NF+ + VP ++
Sbjct: 180 RVSSEARRLHPVEVVSDYEK----TIVDELD--LLREAANASQLRRNFEGSPLLYVPQVY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V + I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 294 NIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A+ +N FE AA R T E F+KPL K +
Sbjct: 353 ----------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLL 386
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVE 635
L A + + ++G+G+ L P D+ A+P+ ++ R + +
Sbjct: 387 RLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQ 446
Query: 636 VILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 674
++ R F Q + ++A +T++RL Q
Sbjct: 447 LL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 207/407 (50%), Gaps = 42/407 (10%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + +EL+ LQD+VPPF S+ AV +E
Sbjct: 53 LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKK 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKG-----EEVVVKVQRPGLKDLFDIDLKNLRVIA 343
LD +F F+ EP+A+AS+ QVH A + +V VKV RPG+K + D DL + ++A
Sbjct: 113 LDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
+++++ +DG + R VA +D L +EA+NA N + +D V +P ++
Sbjct: 173 RWVERL--SADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVY 230
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ ++ M+ + G+ I++++ L E GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V + GR I DFG++G+++ +E L + F + +D +V + ++ G + P
Sbjct: 291 NIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPP 350
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
+ +E AA R E F +PL++ L +
Sbjct: 351 S--------------TRVDELEAAIR-----AVCEPYFDRPLAEIS--------LGMVLM 383
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 622
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPF 430
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 225/460 (48%), Gaps = 59/460 (12%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY-- 345
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 346 --------LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF 397
L ++ SD K I DE L +EAANA NF+ + VP ++
Sbjct: 180 RVSSEARRLHPVEVVSDYEK----TIVDELD--LLREAANASQLRRNFEGSPLLYVPQVY 233
Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
W++ P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPG
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 458 NIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
NI V + I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 294 NIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP 352
Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
A+ +N FE AA R T E F+KPL K +
Sbjct: 353 ----------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLL 386
Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVE 635
L A + + ++G+G+ L P D+ A+P+ ++ R + +
Sbjct: 387 RLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQ 446
Query: 636 VILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 674
++ R F Q + ++A +T++RL Q
Sbjct: 447 LL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,528,232
Number of Sequences: 539616
Number of extensions: 12366248
Number of successful extensions: 45319
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 44368
Number of HSP's gapped (non-prelim): 474
length of query: 760
length of database: 191,569,459
effective HSP length: 125
effective length of query: 635
effective length of database: 124,117,459
effective search space: 78814586465
effective search space used: 78814586465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)