Query 004336
Match_columns 760
No_of_seqs 884 out of 4487
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 21:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.9E-35 8.5E-40 312.4 26.1 354 380-750 113-494 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 8.2E-35 1.8E-39 310.0 28.0 351 388-755 87-465 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.6E-26 3.5E-31 271.1 44.8 248 489-747 308-577 (615)
4 PRK15174 Vi polysaccharide exp 100.0 8.1E-26 1.8E-30 265.1 41.5 318 393-746 52-386 (656)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-24 4E-29 263.9 54.1 356 361-755 514-880 (899)
6 PHA02790 Kelch-like protein; P 100.0 4.9E-29 1.1E-33 282.0 11.2 141 177-321 18-158 (480)
7 PRK11447 cellulose synthase su 100.0 1.8E-24 3.8E-29 270.0 51.4 322 388-745 274-704 (1157)
8 KOG4441 Proteins containing BT 100.0 2E-28 4.3E-33 279.6 13.1 147 176-326 31-177 (571)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.3E-24 7.1E-29 261.7 45.7 356 382-755 464-846 (899)
10 PHA02713 hypothetical protein; 99.9 3.6E-27 7.8E-32 270.6 13.5 144 177-326 21-166 (557)
11 TIGR00990 3a0801s09 mitochondr 99.9 7E-24 1.5E-28 248.8 40.7 333 361-714 142-577 (615)
12 PRK15174 Vi polysaccharide exp 99.9 1.2E-23 2.6E-28 246.8 41.9 333 360-742 56-404 (656)
13 PRK11447 cellulose synthase su 99.9 4.1E-23 8.8E-28 257.8 46.1 317 387-740 355-739 (1157)
14 PRK10049 pgaA outer membrane p 99.9 3.2E-22 7E-27 239.4 44.2 349 381-755 47-470 (765)
15 PRK10049 pgaA outer membrane p 99.9 1.8E-21 3.9E-26 233.0 42.7 332 392-749 24-430 (765)
16 KOG0547 Translocase of outer m 99.9 2.1E-21 4.5E-26 204.0 32.4 339 379-752 111-577 (606)
17 PRK11788 tetratricopeptide rep 99.9 6.3E-21 1.4E-25 211.5 38.6 305 380-745 32-355 (389)
18 PHA03098 kelch-like protein; P 99.9 1.5E-23 3.2E-28 242.3 13.6 142 178-327 6-149 (534)
19 PRK09782 bacteriophage N4 rece 99.9 1.4E-20 3E-25 226.0 39.3 346 382-746 375-745 (987)
20 KOG1126 DNA-binding cell divis 99.9 1.1E-21 2.4E-26 214.3 25.7 213 465-747 411-626 (638)
21 KOG2002 TPR-containing nuclear 99.9 2.8E-19 6E-24 201.7 40.2 356 365-755 289-725 (1018)
22 PRK11788 tetratricopeptide rep 99.9 8.9E-20 1.9E-24 202.3 36.2 273 424-754 36-324 (389)
23 PRK09782 bacteriophage N4 rece 99.9 1.5E-19 3.3E-24 217.1 39.1 325 395-756 354-721 (987)
24 KOG0548 Molecular co-chaperone 99.9 1.7E-19 3.6E-24 192.9 33.6 330 386-757 5-471 (539)
25 KOG2002 TPR-containing nuclear 99.9 1.3E-18 2.9E-23 196.3 40.6 344 379-748 266-648 (1018)
26 KOG0624 dsRNA-activated protei 99.9 4.1E-19 8.8E-24 179.2 32.0 313 380-756 35-385 (504)
27 KOG1126 DNA-binding cell divis 99.8 3.4E-19 7.4E-24 194.9 24.6 269 394-756 330-601 (638)
28 TIGR00540 hemY_coli hemY prote 99.8 2.9E-17 6.2E-22 183.1 38.5 300 380-740 81-398 (409)
29 PRK14574 hmsH outer membrane p 99.8 4.7E-17 1E-21 192.1 41.7 339 388-751 73-523 (822)
30 KOG1155 Anaphase-promoting com 99.8 1.9E-16 4.2E-21 166.1 37.5 344 383-757 164-552 (559)
31 KOG1173 Anaphase-promoting com 99.8 1.6E-17 3.4E-22 178.3 29.9 281 380-755 248-532 (611)
32 KOG2076 RNA polymerase III tra 99.8 4.8E-17 1E-21 182.9 34.8 322 384-742 140-513 (895)
33 KOG1174 Anaphase-promoting com 99.8 8.1E-17 1.8E-21 166.4 32.2 298 398-759 213-518 (564)
34 PRK14574 hmsH outer membrane p 99.8 3.3E-16 7.2E-21 184.9 41.6 342 385-750 36-488 (822)
35 KOG0547 Translocase of outer m 99.8 5.6E-18 1.2E-22 178.4 22.7 239 380-711 323-569 (606)
36 PRK12370 invasion protein regu 99.8 4.8E-17 1E-21 188.1 32.2 247 397-742 275-536 (553)
37 KOG4350 Uncharacterized conser 99.8 1.8E-19 3.8E-24 184.2 10.0 145 178-325 41-187 (620)
38 PRK10747 putative protoheme IX 99.8 9.8E-16 2.1E-20 170.0 40.2 306 379-742 80-391 (398)
39 PRK11189 lipoprotein NlpI; Pro 99.8 7E-17 1.5E-21 171.8 26.8 230 398-713 41-270 (296)
40 KOG2003 TPR repeat-containing 99.8 2.9E-16 6.2E-21 163.3 28.8 355 382-755 275-703 (840)
41 KOG1155 Anaphase-promoting com 99.8 2.5E-16 5.4E-21 165.2 27.9 267 387-711 266-539 (559)
42 KOG0495 HAT repeat protein [RN 99.8 1E-13 2.2E-18 150.7 46.7 368 364-755 394-860 (913)
43 PF13429 TPR_15: Tetratricopep 99.7 7.9E-18 1.7E-22 178.2 13.9 257 388-740 13-276 (280)
44 PRK12370 invasion protein regu 99.7 6.2E-16 1.3E-20 178.8 30.5 222 437-747 275-511 (553)
45 COG3063 PilF Tfp pilus assembl 99.7 1.3E-15 2.9E-20 147.5 25.4 206 475-750 35-245 (250)
46 TIGR02521 type_IV_pilW type IV 99.7 1.5E-15 3.2E-20 154.2 27.4 201 381-645 29-233 (234)
47 TIGR02521 type_IV_pilW type IV 99.7 1.8E-15 3.9E-20 153.5 27.7 201 473-743 29-234 (234)
48 KOG0548 Molecular co-chaperone 99.7 2.9E-15 6.4E-20 160.6 29.0 304 427-748 6-428 (539)
49 KOG0624 dsRNA-activated protei 99.7 2.7E-15 5.9E-20 151.8 27.0 280 424-750 39-345 (504)
50 KOG0495 HAT repeat protein [RN 99.7 3E-14 6.6E-19 154.7 36.6 353 384-754 517-893 (913)
51 PF00651 BTB: BTB/POZ domain; 99.7 1.2E-17 2.6E-22 150.7 8.5 101 178-281 7-110 (111)
52 KOG1129 TPR repeat-containing 99.7 3.3E-16 7.2E-21 157.5 18.5 234 387-715 227-465 (478)
53 PRK11189 lipoprotein NlpI; Pro 99.7 4.7E-15 1E-19 157.9 27.9 204 379-615 60-268 (296)
54 KOG2076 RNA polymerase III tra 99.7 2.3E-14 5.1E-19 161.5 34.3 305 424-757 140-494 (895)
55 COG3063 PilF Tfp pilus assembl 99.7 5.5E-15 1.2E-19 143.3 24.5 205 380-648 32-240 (250)
56 PF13429 TPR_15: Tetratricopep 99.7 9.3E-17 2E-21 170.0 12.5 240 477-757 10-259 (280)
57 KOG1173 Anaphase-promoting com 99.7 3.5E-15 7.5E-20 160.5 23.9 228 395-716 290-526 (611)
58 KOG1125 TPR repeat-containing 99.7 2.2E-15 4.7E-20 162.8 22.4 234 427-711 289-530 (579)
59 PLN03218 maturation of RBCL 1; 99.7 5.6E-13 1.2E-17 161.9 44.0 323 386-742 440-784 (1060)
60 KOG0550 Molecular chaperone (D 99.7 3.5E-15 7.6E-20 154.9 19.8 269 379-711 45-353 (486)
61 KOG4162 Predicted calmodulin-b 99.7 1.8E-13 3.9E-18 152.1 34.0 351 380-747 354-789 (799)
62 PLN03081 pentatricopeptide (PP 99.7 1.1E-13 2.4E-18 165.2 35.1 253 474-739 289-555 (697)
63 KOG1125 TPR repeat-containing 99.7 3.3E-15 7.2E-20 161.5 19.2 225 387-646 289-529 (579)
64 smart00225 BTB Broad-Complex, 99.7 4.1E-16 8.8E-21 134.2 9.6 90 183-275 1-90 (90)
65 KOG1174 Anaphase-promoting com 99.7 3.4E-14 7.5E-19 147.1 25.0 270 381-716 230-508 (564)
66 PLN03218 maturation of RBCL 1; 99.6 2.2E-12 4.8E-17 156.8 43.6 318 391-746 414-755 (1060)
67 KOG2003 TPR repeat-containing 99.6 1E-13 2.2E-18 144.5 27.5 259 392-713 428-694 (840)
68 KOG1840 Kinesin light chain [C 99.6 3.5E-14 7.6E-19 157.6 25.6 250 379-707 195-478 (508)
69 TIGR00540 hemY_coli hemY prote 99.6 4.5E-13 9.8E-18 149.4 34.1 265 427-749 88-374 (409)
70 cd05804 StaR_like StaR_like; a 99.6 4.7E-13 1E-17 146.6 33.3 300 381-742 4-337 (355)
71 PLN02789 farnesyltranstransfer 99.6 1.7E-13 3.7E-18 146.0 27.7 237 394-749 48-310 (320)
72 COG2956 Predicted N-acetylgluc 99.6 1E-12 2.2E-17 132.9 31.4 269 387-716 39-319 (389)
73 PLN03081 pentatricopeptide (PP 99.6 1E-12 2.3E-17 156.8 37.5 322 386-746 192-528 (697)
74 COG2956 Predicted N-acetylgluc 99.6 3.5E-13 7.5E-18 136.3 26.5 242 479-757 39-294 (389)
75 KOG2075 Topoisomerase TOP1-int 99.6 3.6E-15 7.8E-20 157.3 12.5 149 176-327 109-262 (521)
76 KOG1840 Kinesin light chain [C 99.6 1.7E-13 3.6E-18 152.3 26.4 246 423-740 199-478 (508)
77 KOG1156 N-terminal acetyltrans 99.6 3.6E-12 7.8E-17 139.4 34.2 324 398-746 22-439 (700)
78 PLN03077 Protein ECB2; Provisi 99.6 1.7E-12 3.8E-17 158.6 35.8 272 465-754 413-699 (857)
79 KOG4162 Predicted calmodulin-b 99.6 3.1E-12 6.7E-17 142.4 34.0 310 381-714 431-789 (799)
80 KOG1127 TPR repeat-containing 99.6 2.1E-13 4.5E-18 154.4 25.0 363 369-737 478-909 (1238)
81 PRK10747 putative protoheme IX 99.6 1.9E-12 4E-17 143.9 32.4 258 386-709 121-391 (398)
82 PLN02789 farnesyltranstransfer 99.6 8E-13 1.7E-17 140.9 27.3 140 356-522 47-189 (320)
83 PLN03077 Protein ECB2; Provisi 99.6 4.8E-12 1E-16 154.7 35.9 123 386-536 256-381 (857)
84 KOG1129 TPR repeat-containing 99.5 7E-13 1.5E-17 133.8 21.9 270 392-747 188-464 (478)
85 TIGR03302 OM_YfiO outer membra 99.5 2.2E-12 4.7E-17 132.8 22.9 179 423-646 33-234 (235)
86 KOG1156 N-terminal acetyltrans 99.5 7E-11 1.5E-15 129.5 34.8 334 379-740 37-467 (700)
87 COG3071 HemY Uncharacterized e 99.5 6.7E-10 1.4E-14 116.1 37.7 304 380-740 81-389 (400)
88 cd05804 StaR_like StaR_like; a 99.5 2.8E-11 6.2E-16 132.5 28.6 266 382-709 42-337 (355)
89 TIGR03302 OM_YfiO outer membra 99.5 6.7E-12 1.5E-16 129.2 21.3 189 470-743 28-234 (235)
90 KOG1127 TPR repeat-containing 99.5 3.4E-11 7.3E-16 136.8 28.2 320 394-749 469-887 (1238)
91 KOG0550 Molecular chaperone (D 99.4 5.4E-12 1.2E-16 131.4 19.0 258 383-677 83-353 (486)
92 KOG1130 Predicted G-alpha GTPa 99.4 2.7E-12 5.9E-17 133.0 16.2 291 388-740 22-343 (639)
93 PRK15359 type III secretion sy 99.4 4.1E-12 8.9E-17 120.1 15.5 125 403-554 13-138 (144)
94 KOG4591 Uncharacterized conser 99.4 1.9E-12 4.2E-17 121.2 11.1 134 177-317 62-200 (280)
95 PF12569 NARP1: NMDA receptor- 99.4 7.6E-10 1.7E-14 124.7 32.6 289 424-741 5-334 (517)
96 PRK10370 formate-dependent nit 99.4 3.7E-11 8E-16 119.8 18.9 111 465-615 63-176 (198)
97 PRK15359 type III secretion sy 99.4 2.1E-11 4.6E-16 115.2 16.1 113 386-522 27-139 (144)
98 KOG1130 Predicted G-alpha GTPa 99.4 9.6E-12 2.1E-16 129.0 14.5 236 365-646 36-306 (639)
99 PRK14720 transcript cleavage f 99.3 8.7E-10 1.9E-14 129.4 29.6 238 380-690 28-268 (906)
100 PRK15179 Vi polysaccharide bio 99.3 1.4E-10 3E-15 135.3 21.7 150 369-542 72-221 (694)
101 KOG4682 Uncharacterized conser 99.3 8.2E-12 1.8E-16 129.0 10.1 139 177-318 65-205 (488)
102 KOG1915 Cell cycle control pro 99.3 1.9E-08 4.2E-13 106.6 35.3 337 384-756 74-481 (677)
103 KOG2376 Signal recognition par 99.3 4.3E-09 9.3E-14 114.6 31.0 304 393-736 22-400 (652)
104 PRK10370 formate-dependent nit 99.3 8.3E-11 1.8E-15 117.3 16.6 123 396-542 52-177 (198)
105 PRK15179 Vi polysaccharide bio 99.3 4.6E-10 9.9E-15 131.0 25.0 171 384-615 50-220 (694)
106 PRK04841 transcriptional regul 99.3 7.7E-09 1.7E-13 127.7 37.2 325 387-746 378-765 (903)
107 COG5010 TadD Flp pilus assembl 99.3 3.4E-10 7.4E-15 112.7 20.0 175 401-640 51-227 (257)
108 KOG3785 Uncharacterized conser 99.2 8.7E-09 1.9E-13 105.5 27.8 338 389-737 63-453 (557)
109 TIGR02552 LcrH_SycD type III s 99.2 3.2E-10 6.9E-15 105.8 15.4 115 404-542 4-118 (135)
110 PRK14720 transcript cleavage f 99.2 3.3E-09 7.2E-14 124.6 26.7 215 424-723 32-268 (906)
111 KOG3060 Uncharacterized conser 99.2 9.1E-09 2E-13 101.6 24.4 175 386-624 55-234 (289)
112 KOG2376 Signal recognition par 99.2 1.8E-07 4E-12 102.2 35.7 350 380-749 83-495 (652)
113 TIGR02552 LcrH_SycD type III s 99.2 5.1E-10 1.1E-14 104.4 13.9 112 464-615 6-117 (135)
114 COG5010 TadD Flp pilus assembl 99.1 5.3E-09 1.1E-13 104.3 20.5 171 465-706 57-229 (257)
115 KOG0553 TPR repeat-containing 99.1 5.5E-10 1.2E-14 113.2 13.7 102 655-756 91-193 (304)
116 PF12569 NARP1: NMDA receptor- 99.1 2.3E-08 5.1E-13 112.8 28.2 265 474-742 3-292 (517)
117 KOG0783 Uncharacterized conser 99.1 5.3E-11 1.1E-15 132.2 6.0 133 181-317 712-849 (1267)
118 KOG0553 TPR repeat-containing 99.1 1.1E-09 2.3E-14 111.1 14.5 124 379-526 77-200 (304)
119 KOG1915 Cell cycle control pro 99.1 5.2E-07 1.1E-11 96.0 34.5 294 424-746 74-400 (677)
120 KOG1128 Uncharacterized conser 99.1 3E-09 6.4E-14 118.4 18.5 218 472-740 395-615 (777)
121 KOG3060 Uncharacterized conser 99.1 4.8E-08 1E-12 96.5 23.7 202 398-684 27-230 (289)
122 PRK04841 transcriptional regul 99.1 1.1E-07 2.3E-12 117.6 32.9 298 387-713 413-765 (903)
123 KOG1128 Uncharacterized conser 99.0 7.9E-09 1.7E-13 115.1 18.2 212 388-708 403-616 (777)
124 KOG4340 Uncharacterized conser 99.0 3.6E-08 7.9E-13 99.0 20.2 272 434-749 21-313 (459)
125 PRK15363 pathogenicity island 99.0 9.7E-09 2.1E-13 96.0 15.1 107 467-613 26-133 (157)
126 COG4785 NlpI Lipoprotein NlpI, 99.0 5.7E-08 1.2E-12 93.6 20.4 221 379-632 61-292 (297)
127 KOG3785 Uncharacterized conser 99.0 3.3E-06 7.1E-11 87.0 33.3 237 367-641 142-419 (557)
128 PF13525 YfiO: Outer membrane 99.0 1E-07 2.2E-12 95.7 21.4 171 423-635 5-198 (203)
129 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.4E-13 107.9 15.0 253 485-754 11-278 (290)
130 PRK10866 outer membrane biogen 99.0 2E-07 4.4E-12 96.0 24.0 174 423-641 32-238 (243)
131 PRK15363 pathogenicity island 99.0 1.9E-08 4.2E-13 94.0 14.8 99 423-539 35-133 (157)
132 COG4783 Putative Zn-dependent 98.9 3.8E-07 8.3E-12 98.2 25.8 128 470-637 301-430 (484)
133 PLN03088 SGT1, suppressor of 98.9 1.7E-08 3.7E-13 110.2 15.8 112 387-522 6-117 (356)
134 COG4783 Putative Zn-dependent 98.9 6.3E-08 1.4E-12 104.1 19.2 147 423-611 306-453 (484)
135 PLN03088 SGT1, suppressor of 98.9 2.8E-08 6.2E-13 108.4 16.0 112 426-555 5-117 (356)
136 KOG2047 mRNA splicing factor [ 98.9 4.3E-05 9.4E-10 84.6 39.8 371 358-756 150-596 (835)
137 COG3071 HemY Uncharacterized e 98.9 7.6E-06 1.6E-10 86.2 31.3 260 428-748 89-364 (400)
138 PF13414 TPR_11: TPR repeat; P 98.8 1.8E-08 3.8E-13 82.2 8.7 68 473-540 1-69 (69)
139 KOG1941 Acetylcholine receptor 98.8 1.9E-06 4.2E-11 89.0 25.1 234 385-646 8-277 (518)
140 PRK10866 outer membrane biogen 98.8 9.7E-07 2.1E-11 90.9 22.8 200 474-737 31-237 (243)
141 PRK10153 DNA-binding transcrip 98.8 1.5E-07 3.4E-12 106.9 18.2 144 382-546 338-490 (517)
142 PF13525 YfiO: Outer membrane 98.8 4.2E-07 9.1E-12 91.2 18.9 188 474-732 4-198 (203)
143 PF14938 SNAP: Soluble NSF att 98.8 5.3E-07 1.1E-11 95.4 20.2 172 516-746 42-230 (282)
144 KOG4340 Uncharacterized conser 98.8 7.4E-07 1.6E-11 89.8 19.6 268 395-701 22-332 (459)
145 KOG2047 mRNA splicing factor [ 98.8 0.0001 2.2E-09 81.7 37.2 257 473-741 385-687 (835)
146 CHL00033 ycf3 photosystem I as 98.8 1.8E-07 3.8E-12 91.0 14.7 82 474-555 34-119 (168)
147 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.3E-12 99.3 15.2 132 585-716 133-273 (290)
148 KOG1941 Acetylcholine receptor 98.7 3.4E-06 7.3E-11 87.3 24.0 264 390-706 50-358 (518)
149 cd00189 TPR Tetratricopeptide 98.7 1.2E-07 2.6E-12 80.5 11.7 99 425-541 2-100 (100)
150 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.4E-07 5.2E-12 83.8 14.0 104 385-509 4-110 (119)
151 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.3E-07 5E-12 83.9 13.7 101 424-542 3-109 (119)
152 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 2.9E-12 80.1 11.5 98 477-614 2-99 (100)
153 COG4785 NlpI Lipoprotein NlpI, 98.7 8.2E-07 1.8E-11 85.8 17.4 195 474-710 64-268 (297)
154 PRK02603 photosystem I assembl 98.7 5.1E-07 1.1E-11 88.1 16.5 123 379-542 31-153 (172)
155 PRK02603 photosystem I assembl 98.7 3.5E-07 7.5E-12 89.3 15.1 84 472-555 32-119 (172)
156 PF09976 TPR_21: Tetratricopep 98.7 8.3E-07 1.8E-11 84.0 17.2 132 383-536 11-145 (145)
157 PRK11906 transcriptional regul 98.7 6E-07 1.3E-11 97.4 17.9 132 387-542 259-405 (458)
158 CHL00033 ycf3 photosystem I as 98.7 3.8E-07 8.3E-12 88.6 15.2 101 424-542 36-153 (168)
159 COG4235 Cytochrome c biogenesi 98.7 3.6E-07 7.8E-12 93.6 14.8 112 464-615 145-259 (287)
160 PF14938 SNAP: Soluble NSF att 98.7 8.2E-07 1.8E-11 94.0 18.0 211 477-746 37-271 (282)
161 PF13432 TPR_16: Tetratricopep 98.7 9.6E-08 2.1E-12 76.9 7.9 64 479-542 1-64 (65)
162 KOG0543 FKBP-type peptidyl-pro 98.6 4.8E-07 1E-11 95.8 14.8 142 380-539 205-356 (397)
163 PF09976 TPR_21: Tetratricopep 98.6 1.7E-06 3.6E-11 82.0 16.4 125 481-642 17-145 (145)
164 COG4235 Cytochrome c biogenesi 98.6 1.1E-06 2.3E-11 90.2 15.7 121 398-542 137-260 (287)
165 PF13414 TPR_11: TPR repeat; P 98.6 2.5E-07 5.4E-12 75.4 8.7 67 508-614 2-69 (69)
166 PF12895 Apc3: Anaphase-promot 98.6 2E-07 4.3E-12 79.3 7.9 81 436-535 2-84 (84)
167 KOG3617 WD40 and TPR repeat-co 98.6 4.5E-05 9.8E-10 86.1 27.8 285 394-738 811-1171(1416)
168 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00022 4.9E-09 70.3 31.1 200 475-744 59-268 (291)
169 PF12895 Apc3: Anaphase-promot 98.5 3.6E-07 7.8E-12 77.7 8.7 82 487-609 1-84 (84)
170 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00025 5.3E-09 70.0 30.8 226 396-711 36-268 (291)
171 PRK10153 DNA-binding transcrip 98.5 3.3E-06 7.1E-11 96.2 17.1 133 478-650 342-488 (517)
172 PRK10803 tol-pal system protei 98.5 3.3E-06 7.1E-11 87.7 15.5 106 474-616 141-250 (263)
173 COG3898 Uncharacterized membra 98.5 0.0015 3.3E-08 68.8 34.6 301 381-741 82-392 (531)
174 KOG1070 rRNA processing protei 98.5 6.3E-05 1.4E-09 89.6 26.9 212 460-712 1443-1667(1710)
175 COG4105 ComL DNA uptake lipopr 98.4 4.7E-05 1E-09 76.7 22.2 188 383-649 34-238 (254)
176 PF13432 TPR_16: Tetratricopep 98.4 1.1E-06 2.3E-11 70.7 8.1 64 428-509 2-65 (65)
177 PRK11906 transcriptional regul 98.4 2.2E-05 4.8E-10 85.4 20.3 135 465-640 282-432 (458)
178 PF12688 TPR_5: Tetratrico pep 98.4 8.4E-06 1.8E-10 73.9 14.5 99 476-611 2-103 (120)
179 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.5E-06 1.2E-10 90.4 15.5 114 396-536 182-295 (395)
180 PRK15331 chaperone protein Sic 98.4 4.9E-06 1.1E-10 78.4 12.5 108 465-612 27-134 (165)
181 PRK10803 tol-pal system protei 98.4 8.9E-06 1.9E-10 84.5 15.7 101 424-542 143-250 (263)
182 KOG3616 Selective LIM binding 98.4 0.00089 1.9E-08 75.0 31.4 70 372-446 650-729 (1636)
183 KOG0543 FKBP-type peptidyl-pro 98.4 2.1E-06 4.6E-11 91.0 10.7 74 681-754 259-333 (397)
184 KOG2053 Mitochondrial inherita 98.4 0.0015 3.3E-08 75.4 34.0 226 395-648 21-259 (932)
185 KOG4234 TPR repeat-containing 98.3 5.5E-06 1.2E-10 79.2 12.1 76 681-756 136-212 (271)
186 KOG3617 WD40 and TPR repeat-co 98.3 0.00012 2.6E-09 82.9 24.3 177 393-609 738-938 (1416)
187 KOG4648 Uncharacterized conser 98.3 2.8E-07 6E-12 94.4 3.2 229 478-756 100-345 (536)
188 KOG3081 Vesicle coat complex C 98.3 0.00018 4E-09 72.2 22.8 251 484-751 17-281 (299)
189 PF14559 TPR_19: Tetratricopep 98.3 2.6E-06 5.6E-11 69.0 7.9 65 485-549 1-66 (68)
190 KOG4648 Uncharacterized conser 98.3 1.7E-06 3.6E-11 88.8 7.9 230 383-647 97-333 (536)
191 PRK15331 chaperone protein Sic 98.3 9.5E-06 2.1E-10 76.4 12.2 99 381-503 35-133 (165)
192 PF12688 TPR_5: Tetratrico pep 98.3 1.7E-05 3.6E-10 72.0 12.9 97 386-503 4-103 (120)
193 COG4700 Uncharacterized protei 98.3 0.00012 2.6E-09 69.5 18.5 127 584-738 90-219 (251)
194 PF13371 TPR_9: Tetratricopept 98.2 5.2E-06 1.1E-10 68.3 8.4 70 686-755 2-72 (73)
195 COG4105 ComL DNA uptake lipopr 98.2 0.00051 1.1E-08 69.4 23.6 180 474-713 33-238 (254)
196 KOG1070 rRNA processing protei 98.2 0.00029 6.4E-09 84.2 25.1 233 489-757 1438-1679(1710)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.6E-05 7.8E-10 84.1 16.5 119 430-609 176-294 (395)
198 PF14559 TPR_19: Tetratricopep 98.2 4.8E-06 1E-10 67.4 7.0 64 691-754 3-67 (68)
199 PF13371 TPR_9: Tetratricopept 98.2 8E-06 1.7E-10 67.2 8.4 61 482-542 2-62 (73)
200 KOG4234 TPR repeat-containing 98.2 4.2E-05 9E-10 73.3 13.9 119 380-517 92-210 (271)
201 COG4700 Uncharacterized protei 98.2 0.0002 4.4E-09 68.0 18.0 140 465-643 80-221 (251)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.6E-06 1.7E-10 88.8 9.8 69 470-538 70-141 (453)
203 KOG2300 Uncharacterized conser 98.1 0.023 5E-07 61.7 35.2 117 364-498 27-150 (629)
204 COG3898 Uncharacterized membra 98.1 0.0027 5.9E-08 67.0 25.6 254 384-674 121-392 (531)
205 PF13512 TPR_18: Tetratricopep 98.0 0.00013 2.8E-09 67.4 13.7 87 383-490 10-99 (142)
206 PF13424 TPR_12: Tetratricopep 98.0 7.8E-06 1.7E-10 68.3 5.3 67 472-538 2-75 (78)
207 PF13512 TPR_18: Tetratricopep 98.0 0.00017 3.6E-09 66.6 13.8 72 683-754 51-141 (142)
208 COG1729 Uncharacterized protei 98.0 0.0001 2.2E-09 75.0 13.5 105 585-716 143-252 (262)
209 KOG4555 TPR repeat-containing 98.0 0.00026 5.6E-09 63.3 14.0 102 478-615 46-147 (175)
210 COG1729 Uncharacterized protei 98.0 0.00017 3.7E-09 73.3 14.7 106 386-512 144-252 (262)
211 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.4E-05 7.3E-10 83.9 9.9 70 504-613 70-142 (453)
212 KOG2471 TPR repeat-containing 97.9 0.0012 2.6E-08 71.3 21.1 327 395-739 218-682 (696)
213 KOG3081 Vesicle coat complex C 97.9 0.012 2.6E-07 59.5 26.6 254 382-715 14-278 (299)
214 KOG4555 TPR repeat-containing 97.9 0.00043 9.3E-09 62.0 14.5 95 512-646 46-146 (175)
215 PF13424 TPR_12: Tetratricopep 97.9 3.1E-05 6.6E-10 64.6 7.2 74 506-612 2-75 (78)
216 PF06552 TOM20_plant: Plant sp 97.9 9.4E-05 2E-09 70.4 10.5 78 465-542 15-113 (186)
217 PF04184 ST7: ST7 protein; In 97.9 0.0014 3E-08 71.6 20.7 143 481-641 174-321 (539)
218 KOG2053 Mitochondrial inherita 97.9 0.007 1.5E-07 70.2 27.0 90 435-542 21-110 (932)
219 KOG0783 Uncharacterized conser 97.8 2E-05 4.3E-10 88.9 4.6 68 180-247 557-634 (1267)
220 KOG1586 Protein required for f 97.8 0.0036 7.7E-08 61.9 19.1 67 683-749 158-232 (288)
221 KOG2610 Uncharacterized conser 97.7 0.0057 1.2E-07 63.4 19.7 146 367-536 87-236 (491)
222 KOG0511 Ankyrin repeat protein 97.6 0.00019 4.1E-09 74.6 8.4 127 184-314 295-429 (516)
223 KOG1585 Protein required for f 97.6 0.014 3E-07 58.2 20.8 207 380-639 28-251 (308)
224 PF06552 TOM20_plant: Plant sp 97.6 0.00063 1.4E-08 64.9 10.7 101 398-515 6-120 (186)
225 PF13428 TPR_14: Tetratricopep 97.6 0.00016 3.4E-09 53.1 5.4 42 476-517 2-43 (44)
226 KOG4507 Uncharacterized conser 97.6 0.0068 1.5E-07 66.9 19.9 98 659-756 621-720 (886)
227 KOG2796 Uncharacterized conser 97.6 0.0019 4.1E-08 64.8 14.3 141 385-542 179-319 (366)
228 PF02214 BTB_2: BTB/POZ domain 97.6 8.9E-05 1.9E-09 64.4 4.6 88 184-274 1-94 (94)
229 KOG2796 Uncharacterized conser 97.5 0.019 4.1E-07 57.8 20.7 220 475-713 69-320 (366)
230 KOG3616 Selective LIM binding 97.5 0.015 3.2E-07 65.7 21.0 33 713-745 995-1028(1636)
231 KOG1586 Protein required for f 97.4 0.07 1.5E-06 53.0 23.2 133 480-647 39-186 (288)
232 PF13281 DUF4071: Domain of un 97.4 0.0087 1.9E-07 64.6 18.0 191 474-714 140-340 (374)
233 PF13431 TPR_17: Tetratricopep 97.4 0.00017 3.7E-09 49.6 3.3 32 498-529 2-33 (34)
234 KOG2716 Polymerase delta-inter 97.3 0.00094 2E-08 66.7 9.2 95 184-282 7-105 (230)
235 PF10345 Cohesin_load: Cohesin 97.3 0.56 1.2E-05 55.4 34.0 140 379-537 55-207 (608)
236 KOG4642 Chaperone-dependent E3 97.3 0.0029 6.3E-08 62.7 12.1 96 385-504 12-107 (284)
237 KOG0545 Aryl-hydrocarbon recep 97.3 0.0025 5.3E-08 63.3 11.3 111 384-542 179-297 (329)
238 PF13281 DUF4071: Domain of un 97.3 0.064 1.4E-06 58.1 23.1 114 424-555 142-272 (374)
239 KOG3473 RNA polymerase II tran 97.3 0.00067 1.5E-08 56.7 6.1 80 184-267 19-112 (112)
240 KOG2610 Uncharacterized conser 97.3 0.031 6.8E-07 58.1 19.2 160 589-748 109-285 (491)
241 PF13431 TPR_17: Tetratricopep 97.2 0.00038 8.3E-09 47.9 3.6 33 668-700 2-34 (34)
242 PF02259 FAT: FAT domain; Int 97.2 0.21 4.5E-06 54.4 26.9 161 583-744 146-341 (352)
243 KOG0376 Serine-threonine phosp 97.2 0.00049 1.1E-08 74.8 5.8 94 659-752 18-112 (476)
244 KOG2300 Uncharacterized conser 97.2 0.53 1.1E-05 51.6 33.5 342 384-750 8-482 (629)
245 PF13428 TPR_14: Tetratricopep 97.2 0.00074 1.6E-08 49.5 4.9 42 509-550 1-43 (44)
246 PF04184 ST7: ST7 protein; In 97.1 0.022 4.8E-07 62.5 17.3 186 520-750 179-384 (539)
247 PF00515 TPR_1: Tetratricopept 97.1 0.0013 2.7E-08 45.1 5.0 32 510-541 2-33 (34)
248 KOG4642 Chaperone-dependent E3 97.1 0.0033 7.2E-08 62.3 9.7 92 480-611 15-106 (284)
249 KOG2471 TPR repeat-containing 97.1 0.003 6.4E-08 68.3 10.0 240 383-656 100-376 (696)
250 PF07719 TPR_2: Tetratricopept 97.1 0.0012 2.5E-08 45.1 4.8 34 383-416 1-34 (34)
251 PF05843 Suf: Suppressor of fo 97.1 0.018 3.8E-07 60.9 15.9 137 476-652 2-144 (280)
252 PF00515 TPR_1: Tetratricopept 97.0 0.0013 2.9E-08 45.0 4.7 34 475-508 1-34 (34)
253 PF08631 SPO22: Meiosis protei 97.0 0.36 7.9E-06 50.9 25.4 217 379-610 31-273 (278)
254 PF05843 Suf: Suppressor of fo 97.0 0.016 3.4E-07 61.3 15.0 133 386-542 4-140 (280)
255 COG3118 Thioredoxin domain-con 97.0 0.052 1.1E-06 56.0 17.5 128 390-542 141-269 (304)
256 COG2909 MalT ATP-dependent tra 97.0 0.96 2.1E-05 53.4 29.6 229 474-737 414-684 (894)
257 KOG1585 Protein required for f 97.0 0.13 2.7E-06 51.6 19.5 204 475-738 31-253 (308)
258 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0072 1.6E-07 62.8 11.1 124 364-541 60-185 (390)
259 PF07719 TPR_2: Tetratricopept 96.9 0.0019 4.1E-08 44.1 4.9 32 510-541 2-33 (34)
260 KOG1550 Extracellular protein 96.9 0.14 3.1E-06 59.4 23.3 262 472-746 241-543 (552)
261 KOG0985 Vesicle coat protein c 96.8 0.27 5.9E-06 58.0 23.7 278 429-740 1054-1340(1666)
262 COG2976 Uncharacterized protei 96.8 0.072 1.6E-06 51.7 16.2 66 682-747 129-194 (207)
263 KOG0376 Serine-threonine phosp 96.8 0.0021 4.6E-08 70.0 6.0 108 388-519 9-116 (476)
264 KOG0545 Aryl-hydrocarbon recep 96.7 0.045 9.7E-07 54.7 13.8 29 583-611 178-206 (329)
265 KOG1550 Extracellular protein 96.6 0.47 1E-05 55.2 24.6 145 381-554 242-408 (552)
266 COG0790 FOG: TPR repeat, SEL1 96.6 0.45 9.7E-06 50.4 22.4 169 390-629 48-236 (292)
267 COG3118 Thioredoxin domain-con 96.6 0.19 4E-06 52.1 18.1 150 474-631 133-288 (304)
268 PF03704 BTAD: Bacterial trans 96.5 0.038 8.1E-07 52.0 12.0 62 476-537 63-124 (146)
269 PF10300 DUF3808: Protein of u 96.4 0.12 2.6E-06 58.7 17.8 119 596-740 246-375 (468)
270 COG0790 FOG: TPR repeat, SEL1 96.4 0.78 1.7E-05 48.6 23.2 188 487-745 53-270 (292)
271 KOG2838 Uncharacterized conser 96.4 0.0024 5.2E-08 63.8 3.4 57 191-248 261-327 (401)
272 KOG2041 WD40 repeat protein [G 96.4 2.6 5.7E-05 48.2 28.1 87 505-609 848-936 (1189)
273 KOG1914 mRNA cleavage and poly 96.4 2.4 5.2E-05 47.4 36.0 143 599-741 309-464 (656)
274 PF10300 DUF3808: Protein of u 96.4 0.064 1.4E-06 60.9 14.8 121 487-643 245-375 (468)
275 KOG2041 WD40 repeat protein [G 96.2 0.42 9.1E-06 54.3 19.6 234 469-738 687-936 (1189)
276 KOG0551 Hsp90 co-chaperone CNS 96.2 0.025 5.3E-07 58.9 9.4 49 659-707 133-181 (390)
277 KOG1987 Speckle-type POZ prote 96.1 0.0046 9.9E-08 66.0 3.8 118 190-311 109-229 (297)
278 COG2976 Uncharacterized protei 96.1 0.42 9.2E-06 46.5 16.6 25 588-612 164-188 (207)
279 PF13181 TPR_8: Tetratricopept 96.0 0.013 2.9E-07 39.9 4.5 30 511-540 3-32 (34)
280 PF03704 BTAD: Bacterial trans 96.0 0.31 6.7E-06 45.7 15.2 112 514-643 11-124 (146)
281 PF13181 TPR_8: Tetratricopept 95.9 0.012 2.6E-07 40.1 3.9 34 383-416 1-34 (34)
282 KOG1308 Hsp70-interacting prot 95.9 0.0071 1.5E-07 63.1 3.9 93 483-615 122-214 (377)
283 smart00512 Skp1 Found in Skp1 95.8 0.025 5.3E-07 50.1 6.6 81 184-267 4-104 (104)
284 KOG1308 Hsp70-interacting prot 95.8 0.0033 7.1E-08 65.5 1.1 87 626-712 125-215 (377)
285 PF10345 Cohesin_load: Cohesin 95.8 5.6 0.00012 47.0 35.3 313 399-736 37-428 (608)
286 PF08424 NRDE-2: NRDE-2, neces 95.8 0.77 1.7E-05 49.5 19.2 149 462-611 6-182 (321)
287 PF11822 DUF3342: Domain of un 95.7 0.012 2.5E-07 61.6 4.5 90 191-282 14-104 (317)
288 KOG0530 Protein farnesyltransf 95.6 3 6.5E-05 42.6 20.5 227 485-751 53-308 (318)
289 PF02259 FAT: FAT domain; Int 95.6 3 6.5E-05 45.2 23.3 150 509-711 146-341 (352)
290 KOG2838 Uncharacterized conser 95.5 0.024 5.2E-07 56.8 5.6 63 183-248 132-197 (401)
291 PF07079 DUF1347: Protein of u 95.5 5 0.00011 44.0 36.2 134 385-537 8-156 (549)
292 KOG1258 mRNA processing protei 95.5 6.1 0.00013 45.0 35.5 178 583-760 297-489 (577)
293 COG2909 MalT ATP-dependent tra 95.4 8.1 0.00018 46.0 36.8 194 424-646 416-649 (894)
294 PF04910 Tcf25: Transcriptiona 95.4 0.88 1.9E-05 49.8 18.0 145 465-647 30-225 (360)
295 KOG1665 AFH1-interacting prote 95.3 0.041 8.9E-07 53.7 6.3 93 181-276 8-105 (302)
296 PF13176 TPR_7: Tetratricopept 95.3 0.028 6E-07 39.1 3.9 27 585-611 1-27 (36)
297 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.055 1.2E-06 41.2 5.7 41 716-756 5-45 (53)
298 KOG3364 Membrane protein invol 95.1 0.23 5E-06 45.3 10.1 79 679-757 32-116 (149)
299 PF13174 TPR_6: Tetratricopept 95.1 0.032 7E-07 37.4 3.8 31 511-541 2-32 (33)
300 KOG0890 Protein kinase of the 95.0 9.6 0.00021 50.0 26.9 104 583-686 1670-1796(2382)
301 PF13174 TPR_6: Tetratricopept 95.0 0.045 9.8E-07 36.7 4.2 33 476-508 1-33 (33)
302 PRK10941 hypothetical protein; 94.9 0.19 4.1E-06 52.4 10.4 76 681-756 183-259 (269)
303 KOG2714 SETA binding protein S 94.9 0.073 1.6E-06 57.2 7.3 85 184-272 13-102 (465)
304 PF10602 RPN7: 26S proteasome 94.9 0.82 1.8E-05 44.6 14.3 120 566-709 16-143 (177)
305 KOG0985 Vesicle coat protein c 94.7 13 0.00029 44.7 34.3 222 381-639 1102-1336(1666)
306 PF13176 TPR_7: Tetratricopept 94.6 0.065 1.4E-06 37.2 4.3 26 512-537 2-27 (36)
307 PRK15180 Vi polysaccharide bio 94.6 8.2 0.00018 42.6 21.7 122 395-540 301-422 (831)
308 PF14561 TPR_20: Tetratricopep 94.6 0.3 6.6E-06 41.8 9.2 74 461-534 8-83 (90)
309 KOG4507 Uncharacterized conser 94.4 0.14 3E-06 57.0 8.3 96 429-542 613-709 (886)
310 KOG3824 Huntingtin interacting 94.4 0.12 2.7E-06 53.1 7.4 75 477-551 118-193 (472)
311 PF09986 DUF2225: Uncharacteri 94.3 0.52 1.1E-05 47.5 11.8 95 488-612 90-194 (214)
312 PRK10941 hypothetical protein; 94.3 0.46 1E-05 49.5 11.5 70 426-513 184-253 (269)
313 COG4976 Predicted methyltransf 94.0 0.18 3.9E-06 50.0 7.4 97 483-579 3-101 (287)
314 KOG1464 COP9 signalosome, subu 94.0 1.4 3.1E-05 44.9 13.7 201 488-740 40-259 (440)
315 PF14561 TPR_20: Tetratricopep 93.8 0.49 1.1E-05 40.5 8.9 49 494-542 7-55 (90)
316 PF09613 HrpB1_HrpK: Bacterial 93.8 0.97 2.1E-05 42.9 11.5 84 424-525 11-94 (160)
317 KOG3824 Huntingtin interacting 93.7 0.21 4.7E-06 51.4 7.5 63 688-750 125-188 (472)
318 PF12968 DUF3856: Domain of Un 93.6 3.4 7.3E-05 37.0 13.6 102 583-707 7-128 (144)
319 PF08424 NRDE-2: NRDE-2, neces 93.5 6 0.00013 42.6 18.9 162 496-709 6-184 (321)
320 PF04910 Tcf25: Transcriptiona 93.4 5.7 0.00012 43.5 18.6 126 501-640 32-164 (360)
321 KOG1724 SCF ubiquitin ligase, 93.3 0.29 6.2E-06 46.7 7.4 91 189-282 13-127 (162)
322 smart00028 TPR Tetratricopepti 93.3 0.14 3E-06 33.0 3.8 30 477-506 3-32 (34)
323 PRK13184 pknD serine/threonine 93.2 27 0.00058 43.0 27.2 132 389-542 481-624 (932)
324 PF14853 Fis1_TPR_C: Fis1 C-te 93.1 0.42 9.1E-06 36.4 6.5 35 478-512 4-38 (53)
325 KOG1914 mRNA cleavage and poly 93.0 19 0.00041 40.6 33.4 119 631-749 309-438 (656)
326 smart00028 TPR Tetratricopepti 93.0 0.13 2.9E-06 33.1 3.5 32 510-541 2-33 (34)
327 PF12968 DUF3856: Domain of Un 92.9 4.5 9.9E-05 36.2 13.5 101 482-611 16-128 (144)
328 PF08631 SPO22: Meiosis protei 92.9 14 0.0003 38.8 27.3 129 393-539 3-151 (278)
329 PF09613 HrpB1_HrpK: Bacterial 92.9 3.7 8E-05 39.0 13.9 79 477-555 12-91 (160)
330 KOG2396 HAT (Half-A-TPR) repea 92.7 1.1 2.3E-05 49.7 11.4 92 664-755 90-183 (568)
331 PF04781 DUF627: Protein of un 92.7 0.86 1.9E-05 40.3 8.8 91 430-538 3-107 (111)
332 KOG0890 Protein kinase of the 92.7 33 0.00072 45.4 25.6 307 389-742 1389-1732(2382)
333 PF03931 Skp1_POZ: Skp1 family 92.6 0.34 7.3E-06 38.3 5.7 55 184-243 3-58 (62)
334 KOG1258 mRNA processing protei 92.4 24 0.00052 40.3 26.0 91 658-748 310-402 (577)
335 COG5107 RNA14 Pre-mRNA 3'-end 92.4 14 0.00031 40.6 19.0 233 464-711 291-534 (660)
336 KOG3807 Predicted membrane pro 92.2 14 0.0003 39.0 18.0 139 472-628 181-324 (556)
337 KOG0530 Protein farnesyltransf 91.9 16 0.00036 37.4 19.0 133 393-549 53-188 (318)
338 PF04053 Coatomer_WDAD: Coatom 91.9 5 0.00011 45.1 16.1 127 486-641 272-399 (443)
339 KOG1463 26S proteasome regulat 91.8 20 0.00043 38.1 21.7 266 479-745 8-320 (411)
340 TIGR02561 HrpB1_HrpK type III 91.7 4.3 9.2E-05 38.0 12.5 104 481-610 16-120 (153)
341 COG1747 Uncharacterized N-term 91.5 28 0.0006 39.1 20.8 239 267-542 30-292 (711)
342 PF04781 DUF627: Protein of un 91.3 2.4 5.2E-05 37.6 9.9 29 583-611 78-106 (111)
343 PF09986 DUF2225: Uncharacteri 91.3 3.3 7.2E-05 41.7 12.5 66 475-540 118-196 (214)
344 COG4976 Predicted methyltransf 91.1 0.36 7.7E-06 48.0 5.1 56 658-713 8-63 (287)
345 KOG1839 Uncharacterized protei 91.1 3.3 7.2E-05 51.1 14.2 141 382-539 931-1087(1236)
346 PF04053 Coatomer_WDAD: Coatom 91.1 8.2 0.00018 43.4 16.7 103 394-536 272-374 (443)
347 PF13374 TPR_10: Tetratricopep 91.1 0.45 9.8E-06 33.6 4.5 29 584-612 3-31 (42)
348 PF10602 RPN7: 26S proteasome 90.9 3.9 8.6E-05 39.9 12.4 103 475-611 36-141 (177)
349 KOG1538 Uncharacterized conser 90.8 2.8 6.1E-05 47.6 12.2 43 567-609 787-830 (1081)
350 KOG1538 Uncharacterized conser 90.8 14 0.00031 42.2 17.6 212 478-705 588-830 (1081)
351 PF13374 TPR_10: Tetratricopep 90.4 0.59 1.3E-05 32.9 4.6 30 510-539 3-32 (42)
352 COG4649 Uncharacterized protei 90.2 18 0.00039 34.8 16.2 63 480-542 63-127 (221)
353 KOG3807 Predicted membrane pro 89.7 22 0.00048 37.5 16.8 129 452-603 195-331 (556)
354 COG4649 Uncharacterized protei 89.6 9.9 0.00022 36.5 13.0 97 583-708 94-196 (221)
355 TIGR02561 HrpB1_HrpK type III 89.3 4.5 9.9E-05 37.8 10.5 83 426-526 13-95 (153)
356 KOG1464 COP9 signalosome, subu 89.2 20 0.00043 36.9 15.6 210 394-646 38-262 (440)
357 PF11207 DUF2989: Protein of u 88.9 1.8 3.9E-05 42.6 8.0 56 473-529 139-198 (203)
358 COG5159 RPN6 26S proteasome re 88.8 32 0.0007 35.7 20.0 202 393-611 13-234 (421)
359 KOG3840 Uncharaterized conserv 88.1 0.52 1.1E-05 48.3 3.8 86 183-269 97-186 (438)
360 KOG1839 Uncharacterized protei 87.9 4.4 9.6E-05 50.0 12.0 147 466-644 964-1128(1236)
361 PF12862 Apc5: Anaphase-promot 87.7 3.1 6.8E-05 35.8 8.0 59 484-542 7-74 (94)
362 COG3914 Spy Predicted O-linked 87.6 16 0.00034 41.7 15.1 78 465-542 55-135 (620)
363 KOG2396 HAT (Half-A-TPR) repea 87.5 6.4 0.00014 43.8 11.8 79 464-542 94-173 (568)
364 KOG3783 Uncharacterized conser 87.2 30 0.00065 39.1 17.0 64 583-646 449-522 (546)
365 PF10579 Rapsyn_N: Rapsyn N-te 86.9 4.5 9.7E-05 33.5 7.8 61 478-538 9-72 (80)
366 KOG4814 Uncharacterized conser 86.9 9.7 0.00021 43.6 12.9 101 379-504 357-457 (872)
367 KOG3364 Membrane protein invol 86.6 9 0.0002 35.2 10.4 82 616-724 33-117 (149)
368 COG5191 Uncharacterized conser 86.5 1.4 3E-05 45.9 5.7 89 667-755 95-185 (435)
369 COG2912 Uncharacterized conser 85.9 4.6 9.9E-05 41.7 9.3 66 429-512 187-252 (269)
370 PF01466 Skp1: Skp1 family, di 85.7 1.7 3.6E-05 36.1 5.0 34 250-283 11-44 (78)
371 COG5159 RPN6 26S proteasome re 85.2 51 0.0011 34.3 17.2 266 479-744 7-317 (421)
372 PRK13184 pknD serine/threonine 85.2 4.9 0.00011 49.2 10.6 85 662-747 536-626 (932)
373 COG2912 Uncharacterized conser 84.7 4.4 9.5E-05 41.9 8.5 73 683-755 185-258 (269)
374 PRK15180 Vi polysaccharide bio 84.7 3.5 7.7E-05 45.3 8.1 109 461-579 309-417 (831)
375 COG3914 Spy Predicted O-linked 83.9 19 0.00041 41.0 13.5 119 402-542 50-175 (620)
376 KOG1463 26S proteasome regulat 83.0 71 0.0015 34.2 21.5 261 395-679 16-321 (411)
377 KOG2422 Uncharacterized conser 82.3 75 0.0016 36.3 17.2 148 596-743 251-450 (665)
378 PF07721 TPR_4: Tetratricopept 82.2 1.7 3.6E-05 27.6 2.8 23 511-533 3-25 (26)
379 KOG1310 WD40 repeat protein [G 82.0 4.4 9.6E-05 45.2 7.6 97 590-713 381-479 (758)
380 PF10579 Rapsyn_N: Rapsyn N-te 82.0 17 0.00036 30.2 9.1 62 382-446 5-66 (80)
381 COG5107 RNA14 Pre-mRNA 3'-end 81.9 90 0.002 34.7 28.1 158 583-741 302-495 (660)
382 PRK11619 lytic murein transgly 81.8 1.2E+02 0.0026 36.1 30.0 153 589-741 247-436 (644)
383 KOG1310 WD40 repeat protein [G 81.4 5.7 0.00012 44.3 8.2 79 464-542 397-478 (758)
384 KOG0128 RNA-binding protein SA 81.4 1.3E+02 0.0028 36.1 20.1 261 461-721 99-389 (881)
385 KOG1920 IkappaB kinase complex 81.2 86 0.0019 39.0 18.3 43 567-609 922-965 (1265)
386 KOG2422 Uncharacterized conser 80.8 1.1E+02 0.0024 35.0 18.1 128 397-535 252-404 (665)
387 PF07721 TPR_4: Tetratricopept 80.1 2.3 5.1E-05 26.9 3.0 25 476-500 2-26 (26)
388 COG3629 DnrI DNA-binding trans 80.1 8 0.00017 40.4 8.5 65 474-538 152-216 (280)
389 PF15015 NYD-SP12_N: Spermatog 79.4 12 0.00026 40.7 9.6 104 380-501 180-288 (569)
390 PF11817 Foie-gras_1: Foie gra 78.9 15 0.00033 37.9 10.2 80 562-641 154-244 (247)
391 PF07720 TPR_3: Tetratricopept 78.1 6.8 0.00015 27.2 5.0 31 510-540 2-34 (36)
392 PF12862 Apc5: Anaphase-promot 78.0 30 0.00065 29.7 10.3 59 433-505 8-71 (94)
393 PF10516 SHNi-TPR: SHNi-TPR; 77.5 3.6 7.7E-05 29.0 3.4 29 584-612 2-30 (38)
394 KOG3783 Uncharacterized conser 77.4 1.4E+02 0.003 34.1 20.2 74 464-539 256-333 (546)
395 KOG4279 Serine/threonine prote 77.1 6.6 0.00014 45.5 7.2 181 474-687 200-408 (1226)
396 PF10516 SHNi-TPR: SHNi-TPR; 77.0 4.3 9.3E-05 28.6 3.7 28 511-538 3-30 (38)
397 KOG4814 Uncharacterized conser 76.4 30 0.00065 39.8 11.9 91 430-538 361-457 (872)
398 PF12739 TRAPPC-Trs85: ER-Golg 76.4 52 0.0011 36.8 14.3 25 717-741 375-399 (414)
399 COG3947 Response regulator con 74.3 65 0.0014 33.8 12.8 60 583-642 279-340 (361)
400 PF07720 TPR_3: Tetratricopept 74.2 9.1 0.0002 26.6 4.7 32 680-711 2-35 (36)
401 PRK11619 lytic murein transgly 74.0 2E+02 0.0043 34.3 32.4 138 591-738 320-465 (644)
402 PF10373 EST1_DNA_bind: Est1 D 72.8 11 0.00024 39.2 7.6 61 494-554 1-62 (278)
403 COG4941 Predicted RNA polymera 72.6 1E+02 0.0022 33.1 13.8 88 461-548 315-405 (415)
404 KOG2581 26S proteasome regulat 71.1 1.7E+02 0.0037 32.2 17.2 134 395-542 138-280 (493)
405 COG4455 ImpE Protein of avirul 70.8 18 0.0004 36.1 7.7 53 659-711 15-67 (273)
406 KOG4014 Uncharacterized conser 70.4 1.1E+02 0.0024 29.9 14.4 117 472-594 31-155 (248)
407 KOG0546 HSP90 co-chaperone CPR 70.3 8.1 0.00018 41.2 5.5 50 466-515 300-349 (372)
408 KOG2114 Vacuolar assembly/sort 69.9 2.2E+02 0.0047 34.3 17.1 54 484-538 343-397 (933)
409 COG3629 DnrI DNA-binding trans 68.2 26 0.00057 36.7 8.8 81 398-504 136-216 (280)
410 TIGR03504 FimV_Cterm FimV C-te 68.0 19 0.00041 26.3 5.4 25 513-537 3-27 (44)
411 COG5201 SKP1 SCF ubiquitin lig 67.8 15 0.00033 33.0 5.8 96 183-283 3-123 (158)
412 KOG2581 26S proteasome regulat 67.7 2E+02 0.0043 31.7 18.9 133 483-652 134-284 (493)
413 COG5191 Uncharacterized conser 67.4 9.8 0.00021 39.8 5.3 78 465-542 97-175 (435)
414 PF15015 NYD-SP12_N: Spermatog 67.1 31 0.00068 37.7 9.1 102 464-576 172-285 (569)
415 PF12739 TRAPPC-Trs85: ER-Golg 67.0 2.2E+02 0.0047 31.9 16.5 28 389-416 214-241 (414)
416 COG5187 RPN7 26S proteasome re 66.9 1.4E+02 0.003 31.3 13.2 80 567-646 96-186 (412)
417 PF04097 Nic96: Nup93/Nic96; 66.9 2.7E+02 0.0059 33.0 18.0 27 583-609 414-440 (613)
418 PF10373 EST1_DNA_bind: Est1 D 64.6 24 0.00051 36.7 7.9 57 465-521 6-62 (278)
419 COG3947 Response regulator con 64.6 21 0.00046 37.2 7.0 60 477-536 281-340 (361)
420 KOG0687 26S proteasome regulat 64.6 77 0.0017 33.7 11.1 82 565-646 83-175 (393)
421 PF00244 14-3-3: 14-3-3 protei 63.4 1.8E+02 0.0039 29.7 14.7 59 478-536 4-64 (236)
422 PF04097 Nic96: Nup93/Nic96; 63.0 3.2E+02 0.0069 32.4 18.3 41 616-673 415-455 (613)
423 smart00386 HAT HAT (Half-A-TPR 62.7 16 0.00034 23.6 4.1 30 726-755 1-30 (33)
424 KOG0686 COP9 signalosome, subu 62.2 1.8E+02 0.004 32.0 13.7 62 583-644 150-216 (466)
425 PF12854 PPR_1: PPR repeat 62.0 18 0.00039 24.5 4.2 27 678-704 6-32 (34)
426 COG4455 ImpE Protein of avirul 61.4 36 0.00077 34.2 7.6 59 484-542 10-68 (273)
427 PF10255 Paf67: RNA polymerase 59.6 15 0.00033 40.5 5.4 69 616-706 123-191 (404)
428 PF09670 Cas_Cas02710: CRISPR- 58.9 1.6E+02 0.0035 32.5 13.4 51 392-446 140-192 (379)
429 TIGR03504 FimV_Cterm FimV C-te 58.7 17 0.00038 26.5 3.8 26 619-644 3-28 (44)
430 PF09670 Cas_Cas02710: CRISPR- 58.5 2.6E+02 0.0057 30.8 15.0 62 477-538 133-198 (379)
431 PF11207 DUF2989: Protein of u 56.7 2.1E+02 0.0046 28.4 13.9 80 651-732 113-198 (203)
432 PF11817 Foie-gras_1: Foie gra 56.4 81 0.0018 32.4 10.0 65 616-704 179-243 (247)
433 smart00386 HAT HAT (Half-A-TPR 56.1 30 0.00065 22.2 4.6 29 489-517 1-29 (33)
434 KOG2063 Vacuolar assembly/sort 56.1 4.7E+02 0.01 32.2 17.8 29 679-707 684-712 (877)
435 PF04190 DUF410: Protein of un 55.8 2.6E+02 0.0056 29.1 19.8 34 674-707 135-169 (260)
436 KOG4521 Nuclear pore complex, 55.2 3.8E+02 0.0083 33.6 15.9 202 474-711 919-1135(1480)
437 KOG0546 HSP90 co-chaperone CPR 54.2 12 0.00026 40.0 3.3 119 584-716 223-346 (372)
438 COG4941 Predicted RNA polymera 53.2 3.2E+02 0.007 29.4 16.8 89 666-756 317-409 (415)
439 KOG0687 26S proteasome regulat 53.1 1.3E+02 0.0029 32.0 10.5 97 508-611 103-209 (393)
440 KOG1920 IkappaB kinase complex 53.0 5.7E+02 0.012 32.3 21.1 35 191-225 672-707 (1265)
441 KOG0529 Protein geranylgeranyl 53.0 3.5E+02 0.0076 29.9 14.1 141 398-555 43-196 (421)
442 KOG0276 Vesicle coat complex C 52.3 1.6E+02 0.0035 34.0 11.7 97 487-611 598-694 (794)
443 KOG0686 COP9 signalosome, subu 52.3 1.5E+02 0.0033 32.6 11.1 60 384-446 151-210 (466)
444 COG5187 RPN7 26S proteasome re 52.2 2.1E+02 0.0046 30.0 11.6 96 509-611 115-220 (412)
445 KOG4279 Serine/threonine prote 51.9 66 0.0014 37.8 8.8 67 488-554 256-332 (1226)
446 PF13041 PPR_2: PPR repeat fam 51.5 42 0.0009 24.7 5.1 28 584-611 4-31 (50)
447 KOG2114 Vacuolar assembly/sort 50.4 2E+02 0.0042 34.7 12.4 179 380-611 365-549 (933)
448 KOG0511 Ankyrin repeat protein 49.5 7.7 0.00017 41.4 1.0 87 181-272 149-236 (516)
449 smart00299 CLH Clathrin heavy 48.7 2.1E+02 0.0046 26.0 11.9 48 485-533 17-64 (140)
450 PF00244 14-3-3: 14-3-3 protei 48.6 3.1E+02 0.0068 28.0 20.3 44 511-554 3-48 (236)
451 PF13041 PPR_2: PPR repeat fam 48.2 84 0.0018 23.0 6.4 27 511-537 5-31 (50)
452 PF12854 PPR_1: PPR repeat 47.4 45 0.00097 22.5 4.3 26 509-534 7-32 (34)
453 PF08626 TRAPPC9-Trs120: Trans 46.4 1.5E+02 0.0033 38.1 12.0 30 475-504 242-271 (1185)
454 PRK00665 petG cytochrome b6-f 46.3 8.4 0.00018 26.3 0.5 15 121-136 21-35 (37)
455 PF07707 BACK: BTB And C-termi 46.1 17 0.00037 31.3 2.6 32 288-319 1-32 (103)
456 KOG4322 Anaphase-promoting com 46.0 4.4E+02 0.0096 29.3 13.4 108 381-502 271-380 (482)
457 PF07079 DUF1347: Protein of u 45.4 4.9E+02 0.011 29.3 27.6 131 387-536 383-522 (549)
458 PRK12798 chemotaxis protein; R 44.9 4.8E+02 0.01 29.0 22.1 208 405-640 99-320 (421)
459 KOG0276 Vesicle coat complex C 44.6 1.1E+02 0.0023 35.4 8.8 33 472-504 663-695 (794)
460 CHL00008 petG cytochrome b6/f 44.4 9.4 0.0002 26.1 0.5 15 121-136 21-35 (37)
461 PF09205 DUF1955: Domain of un 44.4 1.5E+02 0.0033 27.4 8.2 60 478-537 88-148 (161)
462 KOG1497 COP9 signalosome, subu 44.0 3.8E+02 0.0083 28.6 12.1 119 423-552 103-229 (399)
463 cd02682 MIT_AAA_Arch MIT: doma 41.6 49 0.0011 27.3 4.3 23 685-707 12-34 (75)
464 PHA03098 kelch-like protein; P 41.4 16 0.00036 42.2 2.3 36 250-285 105-140 (534)
465 PF11846 DUF3366: Domain of un 39.9 83 0.0018 30.9 6.8 50 492-542 128-177 (193)
466 KOG1778 CREB binding protein/P 39.9 19 0.0004 38.5 2.1 124 183-310 28-153 (319)
467 TIGR03362 VI_chp_7 type VI sec 39.9 4.9E+02 0.011 27.7 14.5 120 393-537 109-278 (301)
468 PF01535 PPR: PPR repeat; Int 39.3 44 0.00096 21.2 3.2 25 586-610 3-27 (31)
469 KOG4151 Myosin assembly protei 39.0 1.2E+02 0.0026 36.1 8.5 95 662-756 70-171 (748)
470 PF04190 DUF410: Protein of un 38.6 4.7E+02 0.01 27.1 20.3 62 583-644 90-170 (260)
471 PF10932 DUF2783: Protein of u 37.8 78 0.0017 24.7 4.6 52 57-112 5-59 (60)
472 cd02680 MIT_calpain7_2 MIT: do 37.2 58 0.0013 26.8 4.1 34 660-708 2-35 (75)
473 PF10255 Paf67: RNA polymerase 36.8 67 0.0015 35.6 5.9 67 426-503 125-192 (404)
474 PHA02790 Kelch-like protein; P 36.8 29 0.00062 39.7 3.2 37 250-286 120-156 (480)
475 KOG2062 26S proteasome regulat 35.8 8.4E+02 0.018 29.2 17.5 153 477-643 469-634 (929)
476 KOG2723 Uncharacterized conser 35.4 80 0.0017 31.8 5.7 92 180-275 6-103 (221)
477 cd02681 MIT_calpain7_1 MIT: do 34.8 68 0.0015 26.5 4.2 32 492-538 4-35 (76)
478 PF14863 Alkyl_sulf_dimr: Alky 34.3 1.1E+02 0.0025 28.5 6.2 53 474-526 69-121 (141)
479 TIGR00756 PPR pentatricopeptid 33.8 79 0.0017 20.3 3.9 26 682-707 3-28 (35)
480 PRK15490 Vi polysaccharide bio 33.6 2.5E+02 0.0054 32.7 9.9 68 465-534 32-99 (578)
481 PHA02537 M terminase endonucle 33.5 81 0.0018 32.1 5.4 26 484-509 92-117 (230)
482 TIGR00756 PPR pentatricopeptid 33.4 77 0.0017 20.4 3.8 26 586-611 3-28 (35)
483 PF07219 HemY_N: HemY protein 33.0 2E+02 0.0044 25.3 7.4 53 379-437 55-107 (108)
484 PF10938 YfdX: YfdX protein; 32.9 4.3E+02 0.0094 25.0 11.0 61 583-643 75-145 (155)
485 KOG0529 Protein geranylgeranyl 32.7 7.2E+02 0.016 27.6 15.8 89 662-750 92-187 (421)
486 smart00101 14_3_3 14-3-3 homol 32.5 5.7E+02 0.012 26.3 18.1 43 512-554 4-50 (244)
487 PF05053 Menin: Menin; InterP 32.4 3.1E+02 0.0066 31.6 10.0 45 567-611 300-346 (618)
488 KOG4151 Myosin assembly protei 31.4 1.8E+02 0.0039 34.7 8.4 112 380-511 50-163 (748)
489 PF05053 Menin: Menin; InterP 31.1 3.2E+02 0.0069 31.5 9.9 33 675-707 314-346 (618)
490 KOG2715 Uncharacterized conser 31.0 1.1E+02 0.0024 29.1 5.4 101 176-280 15-120 (210)
491 PF14863 Alkyl_sulf_dimr: Alky 30.9 1.4E+02 0.003 28.0 6.1 43 392-440 79-121 (141)
492 PF11846 DUF3366: Domain of un 30.9 1.9E+02 0.0041 28.3 7.6 48 696-743 128-175 (193)
493 PF10952 DUF2753: Protein of u 30.9 2.4E+02 0.0053 25.7 7.2 76 511-611 3-78 (140)
494 PF04222 DUF416: Protein of un 30.7 40 0.00086 33.2 2.6 58 70-127 2-69 (191)
495 PF04212 MIT: MIT (microtubule 30.0 1.2E+02 0.0026 24.2 4.9 29 383-411 5-33 (69)
496 PF02064 MAS20: MAS20 protein 29.2 1.1E+02 0.0023 27.8 4.9 34 721-754 72-105 (121)
497 smart00299 CLH Clathrin heavy 28.4 4.5E+02 0.0098 23.8 11.8 77 434-534 18-94 (140)
498 PF13226 DUF4034: Domain of un 27.6 6.5E+02 0.014 26.4 11.0 26 462-487 64-89 (277)
499 cd02682 MIT_AAA_Arch MIT: doma 27.4 2.4E+02 0.0053 23.2 6.2 39 379-417 9-47 (75)
500 PF10952 DUF2753: Protein of u 27.3 3.6E+02 0.0078 24.6 7.6 56 586-641 4-76 (140)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=312.42 Aligned_cols=354 Identities=15% Similarity=0.121 Sum_probs=289.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccc-------
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW------- 452 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~------- 452 (760)
.+-+.+|-.+|+++-++|++++|+..|+.++++.|++. ++|..+|.++...|+.+.|...+...-+.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi------da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFI------DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh------HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 44455566666666666666666666666666666663 66666666666666666665544111000
Q ss_pred --------cccC-CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 004336 453 --------SSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 453 --------~~~~-d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g 523 (760)
.+.+ -.++...|.++++.+|.-+.+|.++|-++..+|+...|+..|++|++++|...++|++||.+|...+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 0000 0012233588888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc--cH--HHHHHHHHHHHHHcCC
Q 004336 524 HCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL--RK--GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l--~~--~~a~~~Lg~~y~~~g~ 598 (760)
.+++|+..|.+++.+.|++ .++-++|.+|.++ |.++-|+..|++++ ++ .++++++|..+-+.|+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq-----------G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ-----------GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEecc-----------ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 8888888888888888888 8888888888888 99999999999994 44 8999999999999999
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
..+|.++|.+++...|. ++.++||.+|..+|++++|...|.++++..|..+.+.+.++ ..|++++|+..|++++
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999997655 99999999999999999999999999999996555544432 4599999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+++|..+.++.++|..|..+|+.+.|+..|.+|+.++|....++.. +.+|.-.|+..+|+..|+++|+++|+.+++..
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 9999999999999999999999999999999999999999999855 88888889999999999999999999998753
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-35 Score=310.00 Aligned_cols=351 Identities=17% Similarity=0.119 Sum_probs=253.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccc-------------
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS------------- 454 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~------------- 454 (760)
.++.++++..+++.....-..+++.+|... +++.++|.++...|++..|+.++...-....
T Consensus 87 ll~ai~~q~~r~d~s~a~~~~a~r~~~q~a------e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 87 LLSAIFFQGSRLDKSSAGSLLAIRKNPQGA------EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred eehhhhhcccchhhhhhhhhhhhhccchHH------HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 345556666688888888889999999985 9999999999999999999998843222111
Q ss_pred ---cCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 455 ---VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 455 ---~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
.+...+...+..+++++|+...+...+|.++...|+..+|..+|.+|++.+|..+-+|.+||.++..+|+...|+..
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence 01122344566666666666666666666666677777777777777777776677777777777777777777777
Q ss_pred HHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 532 AEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 532 ~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
|+++++++|++ ++|+++|.+|.+. +.+++|+.+|.++ +++ +.++.++|.+|..+|..+-|++.|
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~-----------~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEA-----------RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHH-----------hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 77777777777 7777777777776 7777777777777 333 677777777777777777777777
Q ss_pred HHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhhCCCChH
Q 004336 607 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVY 680 (760)
Q Consensus 607 ~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l~p~~~~ 680 (760)
+++++..|. +++.+||.++-..|+..+|.++|.+++...|+.+...+.+ .+.|..++|...|.++++..|..+.
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 777776665 7777777777777777777777777777777655544433 2446777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+..+||.+|.++|++++|+..|+.++.+.|.....+.. +..|..+|+...|+++|.+|+.++|..+++..-+..+
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 77777777777777777777777777777777766633 6777777777777777777777777777665544433
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=1.6e-26 Score=271.09 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchh
Q 004336 489 NCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~---~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~ 564 (760)
+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++.++|++ .++..+|.++...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~--------- 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL--------- 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------
Confidence 4556666666666654 35566677777777777888888888888888877777 7777777777776
Q ss_pred hhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.+++|+..+.+++.. +.+++.+|.++...|++++|+.+|+++++++|. .++.++|.++...|++++|+..+
T Consensus 379 --g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 --GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777766332 677777888888888888888888888777665 66777788888888888888888
Q ss_pred HHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHH------HHHHHHH-HHcCCHHHHHHHHHHHHH
Q 004336 639 TKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPY------RYRAAVL-MDSHKENEAIAELSRAIA 707 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~------~~La~~~-~~~g~~~eAi~~l~kal~ 707 (760)
++++...|..+..+..++ ..|++++|+..|+++++++|.....+ ...+.++ ...|++++|+..+++++.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888877777665554432 34777888888888887777643322 2223333 335778888888888887
Q ss_pred cCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 708 FKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 708 ~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
++|++...+. .+.++...|++++|+..|++++++.+...+
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 7777765553 377777778888888888888777776544
No 4
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=8.1e-26 Score=265.08 Aligned_cols=318 Identities=11% Similarity=-0.023 Sum_probs=286.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
++..|++++|+..++.++...|+++ .+++.+|.+....|++++|+..+ ++++..+|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~------~~l~~l~~~~l~~g~~~~A~~~l------------------~~~l~~~P 107 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGR------DLLRRWVISPLASSQPDAVLQVV------------------NKLLAVNV 107 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCch------hHHHHHhhhHhhcCCHHHHHHHH------------------HHHHHhCC
Confidence 3444599999999999999999996 99999999999999999999999 99999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++...|+. .++..++.
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~- 186 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS- 186 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 66665543
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 624 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~ 624 (760)
+... +++++|+..+...+.. ......++.++...|++++|+..|+++++.+|. .++..+|.+
T Consensus 187 l~~~-----------g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~ 255 (656)
T PRK15174 187 FLNK-----------SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLA 255 (656)
T ss_pred HHHc-----------CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5555 8889999888876332 334456788999999999999999999997766 889999999
Q ss_pred HHHcCCHHH----HHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004336 625 HFLKNNKTT----AYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696 (760)
Q Consensus 625 ~~~~g~~~~----A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~ 696 (760)
+...|++++ |+..++++++..|+...++..++ ..|++++|+..++++++++|+++.++..+|.++.+.|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999986 89999999999998877766553 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 697 eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+|+..|++++...|+...+.. .+.++...|++++|+..|+++++.+|++.
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999876554 47788889999999999999999998854
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.8e-24 Score=263.91 Aligned_cols=356 Identities=15% Similarity=0.100 Sum_probs=315.4
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.... .+....++..++.++...|++++|+.+|++++..+|.+. ..+..++..+...|+++
T Consensus 514 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 514 NPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLK 584 (899)
T ss_pred CHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHH
Confidence 334444555554443 233456677888888888899999999999999988885 77888889999999999
Q ss_pred HHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 441 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
+|..++ ++++...|.+...++.+|.++...|++++|+..|+++++..|.++.++..+|.++.
T Consensus 585 ~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 585 KALAIL------------------NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646 (899)
T ss_pred HHHHHH------------------HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999888 89999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVD 595 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~ 595 (760)
..|++++|+..|+++++.+|++ .++..++.++... +.+++|...+...... ...+..+|.++..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-----------KRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 9999999999999999999998 9999999999998 8899999988877332 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHH
Q 004336 596 CGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEM 670 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~k 670 (760)
.|++++|+..|++++...|. ..+..++.++...|++++|...++++++..|++..++..++ ..|+.++|+..|++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999998776 78889999999999999999999999999998877666553 35999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 671 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 671 al~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
+++.+|+++.++..+|.++...|+ .+|+..+++++...|+++..+ ..+.++...|++++|+..|+++++.+|.++++.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 999999999999999999999999 889999999999999998776 448888889999999999999999999999887
Q ss_pred HHHHHh
Q 004336 750 ELHSRV 755 (760)
Q Consensus 750 ~~~~r~ 755 (760)
..+..+
T Consensus 875 ~~l~~~ 880 (899)
T TIGR02917 875 YHLALA 880 (899)
T ss_pred HHHHHH
Confidence 665544
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=4.9e-29 Score=282.01 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=129.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
-++.+|||++++| ++|||||+|||||||||||||++||+|+.+ +|.+...||++++|+.||+|+|||+|. |+.+||+
T Consensus 18 ~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~ 94 (480)
T PHA02790 18 MTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVV 94 (480)
T ss_pred hhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHH
Confidence 3678999988775 589999999999999999999999999965 576632389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~ 321 (760)
+||++|++||++.|+++|++||..+| +++||+++..+|..+++..|...|.+++.++|+...+.
T Consensus 95 ~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~ 158 (480)
T PHA02790 95 NLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDD 158 (480)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999999999999999999 79999999999999999999999999999999987653
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.8e-24 Score=270.04 Aligned_cols=322 Identities=17% Similarity=0.059 Sum_probs=237.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..|..++..|++++|+..|+++++.+|+++ .++..+|.++.+.|++++|+.++ +++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l------------------~~A 329 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF------------------EKA 329 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 458889999999999999999999999996 89999999999999999999999 999
Q ss_pred HHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 468 LESDAPKGV--------------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 468 l~~~p~~~~--------------~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
++.+|++.. ....+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999987643 224568899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-------------HHHHHHHHHHHHHcCCH
Q 004336 534 ESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------------GQALNNLGSVYVDCGQL 599 (760)
Q Consensus 534 ~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------------~~a~~~Lg~~y~~~g~~ 599 (760)
++++++|++ .++..++.++... ..++|+..+...... ...+..+|.++...|++
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~~~------------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYRQQ------------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhc------------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 999999999 8888888887542 234444443322100 23455677777777777
Q ss_pred HHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----------------------
Q 004336 600 DLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR---------------------- 655 (760)
Q Consensus 600 ~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~---------------------- 655 (760)
++|+..|+++++.+|. .+++.+|.+|...|++++|+..++++++..|.+...+...
T Consensus 478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 7777777777776665 6677777777777777777777777777766544332211
Q ss_pred --------------------------------------------------------HhcCCHHHHHHHHHHHHhhCCCCh
Q 004336 656 --------------------------------------------------------SEYCDRELTRADLEMVTQLDPLRV 679 (760)
Q Consensus 656 --------------------------------------------------------~~~~~~~~A~~~l~kal~l~p~~~ 679 (760)
...|++++|+..|+++++.+|+++
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 112555556666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 680 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 680 ~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
.++..+|.+|...|++++|++.++++++..|++...+.. +.++...|++++|++.|++++...|++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 666666666666666666666666666655555544432 555555566666666666666555443
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=2e-28 Score=279.64 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=141.0
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
-..+.+|||++.+++++|+|||+|||||||||++|||++|+|+.+++|.|. ||++.+|+.|++|+|||+|. |+.+||
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~-i~~~nV 107 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLE-ISEDNV 107 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEE-echHhH
Confidence 357889999999999999999999999999999999999999999999997 89999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
++||.+|++||+..|+++|++||..++ +++||+++..+|+.+++..|...+..++.++|++....++++.
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~ 177 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLL 177 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhC
Confidence 999999999999999999999999999 7999999999999999999999999999999998887777764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.3e-24 Score=261.68 Aligned_cols=356 Identities=15% Similarity=0.084 Sum_probs=250.0
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcccc--------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWS-------- 453 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~-------- 453 (760)
.+..+..+|.++...|++++|+..|++++..+|++. .++..++.++...|++++|..+++......
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 345677788888888888888888888888888875 777778888888888888887772211100
Q ss_pred --------ccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 454 --------SVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 454 --------~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..+...+...+.+++..+|.+...++.++..+...|++++|+..++++++..|.+...+..+|.++...|++
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 000011233345666666666666666666666666666666666666666666666667777777777777
Q ss_pred HHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHH
Q 004336 526 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~ 600 (760)
++|+..|+++++.+|++ .++..++.++... +.+++|+..+.+.+.. ..++..++.++...|+++
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVM-----------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 77777777776666666 6666666666666 6666666666665322 566667777777777777
Q ss_pred HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH---HHHHhcCCHHHHHHHHHHHHhhC
Q 004336 601 LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY---EKRSEYCDRELTRADLEMVTQLD 675 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~---~~~~~~~~~~~A~~~l~kal~l~ 675 (760)
+|+..++.+.+..|. ..+..+|.++...|++++|+..|++++...|.....+ ......|+.++|...+++++..+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777766664443 5667777888888888888888888888777553222 11234478888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 676 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 676 p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
|++...+..+|.++...|++++|+..|+++++..|+++..+.. +.++...|+ .+|+..++++++..|+++..+..+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 8888888888888888888888888888888888887766533 777777788 77888888888888888877766655
Q ss_pred h
Q 004336 755 V 755 (760)
Q Consensus 755 ~ 755 (760)
+
T Consensus 846 ~ 846 (899)
T TIGR02917 846 L 846 (899)
T ss_pred H
Confidence 4
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=270.55 Aligned_cols=144 Identities=13% Similarity=0.258 Sum_probs=133.8
Q ss_pred CCccceeEEEEec-CeEeehhHHHHhcCCHHHHhhccCCCCCCc-cceeEecCCCCCHHHHHHHHhccccCccCCCChhh
Q 004336 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (760)
Q Consensus 177 ~~~~~~dv~~~~~-~~~~~~hr~~la~~s~yf~amf~~~~~e~~-~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~ 254 (760)
.++.+|||+|+|+ |++|||||+||||+|+||+|||+++|+|+. +++|+|+ ||++++|+.||+|+|||+ |+++|
T Consensus 21 ~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~~n 95 (557)
T PHA02713 21 DDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISSMN 95 (557)
T ss_pred hCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCHHH
Confidence 4678999999998 899999999999999999999999999875 7899997 899999999999999996 57999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
|++||.+|++||++.|+++|++||..++ +++||+++..++..+.+..|...|.+++.++|+.....++|..
T Consensus 96 v~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~ 166 (557)
T PHA02713 96 VIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKK 166 (557)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 9999999999999999999999999999 7999999999888888888999999999999998777777653
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7e-24 Score=248.84 Aligned_cols=333 Identities=11% Similarity=0.036 Sum_probs=278.3
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.+..... ...+..+|.+|+..|++++|+..++++++++|++. .+++.+|.++...|+++
T Consensus 142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------KALNRRANAYDGLGKYA 211 (615)
T ss_pred CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHH
Confidence 344555555554443321 34678889999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHhhhccc-----------------------------ccc------------------------------------
Q 004336 441 IADCWLQLYDRW-----------------------------SSV------------------------------------ 455 (760)
Q Consensus 441 ~A~~~l~l~~~~-----------------------------~~~------------------------------------ 455 (760)
+|+..+...... ...
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 997543210000 000
Q ss_pred -----------------CCcCcHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 456 -----------------DDIGSLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 456 -----------------~d~~sl~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
....++..+++++.. .|....++..+|.++...|++++|+..|+++++++|.+..++..+
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l 371 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 000122335556654 477888999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--H--HHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--K--GQALNNLG 590 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--~--~~a~~~Lg 590 (760)
|.++...|++++|+..|+++++.+|++ .+++.+|.++... |++++|+..+++++. + ..++.++|
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK-----------GEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 999999999999999999999999999 9999999999998 999999999999843 3 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH-----------HHHh
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE-----------KRSE 657 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~-----------~~~~ 657 (760)
.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..|+++++..|.....+. ....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999997766 88999999999999999999999999999885322111 1112
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
.+++++|+..++++++++|++..++..+|.++.+.|++++|+..|++++++.+....
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 488999999999999999999999999999999999999999999999998876554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=1.2e-23 Score=246.82 Aligned_cols=333 Identities=13% Similarity=0.061 Sum_probs=287.5
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
+....+..+++..... .++.+.+++.+|...+..|++++|+..|++++..+|+++ .++..+|.++...|++
T Consensus 56 g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 56 DETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLLVASVLLKSKQY 126 (656)
T ss_pred CCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCH
Confidence 3444555555554444 455677899999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++|+..+ .+++..+|++..++..+|.++...|++++|+..+++++...|++..++..++ .+
T Consensus 127 ~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l 187 (656)
T PRK15174 127 ATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF 187 (656)
T ss_pred HHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence 9999999 9999999999999999999999999999999999999999999999887765 48
Q ss_pred HHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHH
Q 004336 520 YDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVY 593 (760)
Q Consensus 520 ~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y 593 (760)
...|++++|+..+++++..+|.. .....++.++... +++++|+..+.+.+.. ..+++++|.++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-----------GKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 89999999999999999987644 4455667777777 8899999999888433 88999999999
Q ss_pred HHcCCHHH----HHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHH
Q 004336 594 VDCGQLDL----AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDREL 663 (760)
Q Consensus 594 ~~~g~~~e----A~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~ 663 (760)
...|++++ |+..|+++++.+|. .++..+|.++...|++++|+..++++++..|++..++..+ ...|++++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999996 89999999998777 8999999999999999999999999999999887665444 34599999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
|+..|++++..+|.....+..+|.++...|++++|+..|+++++..|++.. .++++|+..|.++++.-
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-----------~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-----------QSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-----------hhHHHHHHHHHHHHHhc
Confidence 999999999999999887888899999999999999999999999998752 34445555555555543
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=4.1e-23 Score=257.82 Aligned_cols=317 Identities=16% Similarity=0.031 Sum_probs=270.7
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...|.+++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ ++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~y------------------~~ 410 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDS------YAVLGLGDVAMARKDYAAAERYY------------------QQ 410 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HH
Confidence 3557788888999999999999999999885 88888999999999999999999 67
Q ss_pred HHHhCCCcHHHHHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 467 MLESDAPKGVLYFR------------------------------------------QSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 467 al~~~p~~~~~~~~------------------------------------------la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++..+|++..++.. +|..+...|++++|++.|+++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777666655444 445566789999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK- 582 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~- 582 (760)
+|+++.+++.+|.+|...|++++|+..++++++.+|++ ++++.++..+... +..++|+..+......
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~-----------~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS-----------DRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHhCCchh
Confidence 99999999999999999999999999999999999999 8888888887777 7777887777654211
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 583 -------------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 583 -------------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
......++..+...|++++|+.+++. .+.....+..+|.++...|++++|+..|+++++..|++.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 23345678899999999999999872 344447889999999999999999999999999999887
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------HH-HH
Q 004336 650 SAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL------LH-LR 718 (760)
Q Consensus 650 ~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~------~~-l~ 718 (760)
.+...++ ..|++++|+..++++++..|+++..+..+|.++...|++++|++.|++++...|+.+. ++ ..
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 7766553 4599999999999999999999999999999999999999999999999998765431 22 33
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 004336 719 AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 719 a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
+.++...|++++|+..|++++.
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999999985
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=3.2e-22 Score=239.38 Aligned_cols=349 Identities=12% Similarity=0.002 Sum_probs=285.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+.++..+|..+...|++++|+..|+++++.+|+++ .++..++.++...|++++|+..+
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~l~~~g~~~eA~~~l-------------- 106 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------DYQRGLILTLADAGQYDEALVKA-------------- 106 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH--------------
Confidence 3456688888889999999999999999999999996 88889999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
++++..+|+++. ++.+|.++...|++++|+..++++++..|++..++..+|.++...|..++|+..++++.. .|
T Consensus 107 ----~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 107 ----KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred ----HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 999999999999 999999999999999999999999999999999999999999999999988888875554 32
Q ss_pred Ch-----------HHH------------H---HHHH-----HHHcccCCCCcc-------------hhhhhHHHHHHhhh
Q 004336 541 SF-----------EAF------------F---LKAY-----ALADSSQDSSCS-------------STVVSLLEDALKCP 576 (760)
Q Consensus 541 ~~-----------~a~------------~---~la~-----~l~~~~~~~~~~-------------~~~~~~leeAl~~~ 576 (760)
+. .+. + ..+. .......++... -...+++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 21 000 0 0000 000000111110 01225678888888
Q ss_pred Hhhcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 577 SDRLR-----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 577 ~~~l~-----~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
++.+. +..+...+|.+|...|++++|+..|+++++.+|. .....++.++...|++++|+..++++....
T Consensus 261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 88843 2345555799999999999999999999886543 456778888999999999999999999987
Q ss_pred cCc-------------H--HH----HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 646 RNN-------------A--SA----YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 646 ~~~-------------~--~~----~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
|.. . .+ ...+...|+.++|+..+++++...|.++.++..+|.++...|++++|++.+++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 621 1 11 1223455999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 707 AFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 707 ~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
...|++..+++. +..+...|++++|...++++++..|+++.+..+-...
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999987744 8889999999999999999999999999887664433
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.8e-21 Score=232.99 Aligned_cols=332 Identities=11% Similarity=0.002 Sum_probs=274.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+....|++++|+..+.++...+|... .++..+|.++...|++++|...+ ++++..+
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a------~~~~~lA~~~~~~g~~~~A~~~~------------------~~al~~~ 79 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPA------RGYAAVAVAYRNLKQWQNSLTLW------------------QKALSLE 79 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhC
Confidence 44566799999999999998888884 78999999999999999999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++.++..+|.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++ .++..++.
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999 88888888
Q ss_pred HHHcccCCCCcc---h-----------------------------hhhhHH---HHHHhhhHhhccH-----------HH
Q 004336 551 ALADSSQDSSCS---S-----------------------------TVVSLL---EDALKCPSDRLRK-----------GQ 584 (760)
Q Consensus 551 ~l~~~~~~~~~~---~-----------------------------~~~~~l---eeAl~~~~~~l~~-----------~~ 584 (760)
++.......... . ...+.+ ++|++.++..+.. ..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 776432211000 0 000112 5566655555311 12
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHhhc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--------HHHH
Q 004336 585 ALNN-LGSVYVDCGQLDLAADCYSNALKIR---HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--------ASAY 652 (760)
Q Consensus 585 a~~~-Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--------~~~~ 652 (760)
+... +| .+...|++++|+..|+++++.. |..+...+|.+|...|++++|+..|+++++..|.. ..++
T Consensus 239 a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 2222 34 4467899999999999999864 44666668999999999999999999999887744 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 004336 653 EKRSEYCDRELTRADLEMVTQLDPLR---------------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL 717 (760)
Q Consensus 653 ~~~~~~~~~~~A~~~l~kal~l~p~~---------------~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l 717 (760)
......+++++|+..++++...+|.. ..++..+|.++...|++++|++.+++++...|++..+++
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33456699999999999999988732 346678999999999999999999999999999998885
Q ss_pred H-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 718 R-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 718 ~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
. +.++...|++++|++.++++++++|++..+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 5 9999999999999999999999999997644
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-21 Score=204.02 Aligned_cols=339 Identities=16% Similarity=0.153 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....|.++-..|+-++..|+|++|+++|.+++.+.|+.+ --+.+++.+|...|+|++.++..
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep------iFYsNraAcY~~lgd~~~Vied~------------ 172 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP------IFYSNRAACYESLGDWEKVIEDC------------ 172 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc------hhhhhHHHHHHHHhhHHHHHHHH------------
Confidence 456788888999999999999999999999999999987 55666899999999999999988
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHh--------------CC
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ------------------LARQH--------------AA 506 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~------------------kal~~--------------~p 506 (760)
.++++++|+...++++.+.++..+|++++|+.... +.++. .|
T Consensus 173 ------TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 173 ------TKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP 246 (606)
T ss_pred ------HHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999875432 21110 00
Q ss_pred ---C-----------------------------------------------------------------c---------H
Q 004336 507 ---S-----------------------------------------------------------------D---------H 509 (760)
Q Consensus 507 ---~-----------------------------------------------------------------~---------~ 509 (760)
. + +
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 0 0 1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQ 584 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~ 584 (760)
.++...|..++-.|++..|...++++|.++|.+ ..|..++.+|.+. .+-++..+.|..+ +.+ ++
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~-----------~~~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE-----------NQSEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh-----------hccHHHHHHHHHHHhcCCCCCc
Confidence 223333444555566666666666666666666 4466666666655 3333333344333 222 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY 658 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~ 658 (760)
+|+..|.+++-.++|++|+.-|++++.++|. .++..++-+.++++++++++..|+.+++..|+.+..|...+ ..
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH
Confidence 6666666666666666666666666666665 56666666666666666666666666666666555554332 34
Q ss_pred CCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHH
Q 004336 659 CDRELTRADLEMVTQLDPL------RVYPYRYRAAVL-MDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLG 730 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~------~~~~~~~La~~~-~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~ 730 (760)
+++++|++.|++++++.|. ++.++..-|.+. ...+++.+|+..+++|++++|.....+.. +.+..++|+.++
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 5666666666666666666 444444444322 23456666666666666666666655533 666666666666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHH
Q 004336 731 ALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
|+++|++++.+...-.+++..|
T Consensus 556 AielFEksa~lArt~~E~~~a~ 577 (606)
T KOG0547|consen 556 AIELFEKSAQLARTESEMVHAY 577 (606)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666666655555555444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6.3e-21 Score=211.55 Aligned_cols=305 Identities=15% Similarity=0.041 Sum_probs=253.0
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+...+..|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~------------- 92 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV------ELHLALGNLFRRRGEVDRAIRIH------------- 92 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCcHHHHHHHH-------------
Confidence 34455667778888889999999999999999999985 88999999999999999999999
Q ss_pred cHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 460 sl~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
++++...+.. ...+..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++
T Consensus 93 -----~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 93 -----QNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred -----HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 7776643222 3578899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 536 IQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 536 l~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++..|.. .. . ....+..+|.++...|++++|+..|+++++..|
T Consensus 168 ~~~~~~~~~~---------~---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 168 EKLGGDSLRV---------E---------------------------IAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHhcCCcchH---------H---------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 9887765 10 0 034567789999999999999999999998766
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHH----HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAY----EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 687 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~----~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~ 687 (760)
. .+++.+|.++...|++++|++.++++++..|... ..+ ......|+.++|...++++++.+|+... +..+|.
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~ 290 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQ 290 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHH
Confidence 5 7888999999999999999999999999887542 222 2233568999999999999999997754 488999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHH-HH-cCCHHHHHHHHHHHH----hcCCCc
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFH-EH-TGDVLGALRDCRAAL----SVDPND 745 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~-~~-~g~~~~A~~~~~~aL----~l~P~~ 745 (760)
++.+.|++++|+..++++++..|++..+... +... .. .|+..+|+..+++.+ ..+|++
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999876633 2222 22 468888888777665 455553
No 18
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=242.27 Aligned_cols=142 Identities=16% Similarity=0.244 Sum_probs=132.7
Q ss_pred CccceeEEEEe--cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 178 DQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 178 ~~~~~dv~~~~--~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
++.+|||+|++ +|++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.||+|+|||+|. |+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHHH
Confidence 78899999998 9999999999999999999999999998 6789997 7 999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEI 327 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~l 327 (760)
++||.+|++||++.|+..|++||...+ +.+||++++++|..+++..|...|.+++.++|......+++..+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l 149 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL 149 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 999999999999999999999999998 79999999999999999999999999999999876666555533
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.4e-20 Score=225.96 Aligned_cols=346 Identities=13% Similarity=0.008 Sum_probs=281.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC---HHHHHHHHhhhccccc----
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN---WTIADCWLQLYDRWSS---- 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~---~~~A~~~l~l~~~~~~---- 454 (760)
...++.+++...+..|++++|..+|+++....++-. ........++.++...+. ...+..+. ..-.+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~ 448 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR---LSQTLMARLASLLESHPYLATPAKVAILS---KPLPLAEQR 448 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc---cCHHHHHHHHHHHHhCCcccchHHHHHhc---cccccchhH
Confidence 456778889999999999999999999988733321 111344478888888877 34443332 10000
Q ss_pred ------cCCcCcHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 455 ------VDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 455 ------~~d~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+.......+.+++..+|. ++.+++++|.++.. +++++|+..|.+++...|++. ....+|.++...|+++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHH
Confidence 0111234446777777788 99999999999998 899999999999999999765 4667788888999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA 602 (760)
+|+..|++++...|....++.+|.++... |.+++|...+.+.+.. ...+..++......|++++|
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~-----------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAA-----------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 99999999988767667788888888888 8888999888887443 44444555566667999999
Q ss_pred HHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCC
Q 004336 603 ADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 603 ~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~ 677 (760)
+..|+++++.+|. .++.++|.++.+.|++++|+..|+++++..|++..++..++ ..|++++|+..++++++.+|+
T Consensus 596 l~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 596 LNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999998776 88999999999999999999999999999998887776654 458999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 678 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 678 ~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
++.+++++|.++...|++++|+..|+++++..|++..+... +.+.....+++.|.+.++++..++|+..
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999877744 7888887889999999999999988765
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.1e-21 Score=214.26 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=153.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
+..+..+|+.++.|..+|++|--+++++.|+++|++|++++|....+|..+|.-+..+..+|.|...|+.|+..+|.+
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-- 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-- 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--
Confidence 444455556666666666666666666666666666666666655566566655555666666666666666555555
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
-.+|+.+|.+|.++++++.|.-.|++|++++|. .....+|
T Consensus 489 --------------------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 489 --------------------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred --------------------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 455666666666666666666666666666655 4455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..+.+.|+. ++|+..+++|+.++|.++-..+..|.+++..+++++|+..+
T Consensus 531 ~~~~~~k~~------------------------------d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 531 RIQHQLKRK------------------------------DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred HHHHHhhhh------------------------------hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 555555555 66677777788888899999999999999999999999999
Q ss_pred HHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 703 SRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 703 ~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
++.-++.|+....+ +.+.+|.++|+.+.|+..|--|+.++|.-.+
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999998777 6699999999999999999999999998665
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.8e-19 Score=201.75 Aligned_cols=356 Identities=17% Similarity=0.079 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHH
Q 004336 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444 (760)
Q Consensus 365 ~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~ 444 (760)
...+.+..........-.+..+|++|..|..+|+|++|..+|.++++.+|++- +-.++.+|..+...|+++.|..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-----VLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-----cccccchhHHHHHhchHHHHHH
Confidence 33444444444444566788899999999999999999999999999999984 4678889999999999999999
Q ss_pred HHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 445 ~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
.+ ++.+...|++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..+|.++.
T Consensus 364 ~f------------------Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 364 CF------------------EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HH------------------HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99 9999999999999999999999886 6788999999999999999999999999987
Q ss_pred HCCCHHHHHHHHHHHHhh-----cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------------
Q 004336 521 DTSHCEEGLRKAEESIQM-----KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------ 582 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l-----~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------ 582 (760)
...-+.. +..|.+|+.+ .+-. +...++|..+... |.+++|...+..+...
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~-----------g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL-----------GNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh-----------cChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 7655555 9999998853 2211 7778888887777 6666666666665221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH--
Q 004336 583 --GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS-- 656 (760)
Q Consensus 583 --~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-- 656 (760)
....+++|.++...++++.|.+.|...++..|. +++..+|-.....++..+|..++..++..+..+..+....+
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 224778888888888888888888888887766 67777776666777788888888877766542221111000
Q ss_pred --------------------------------------------------hcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 657 --------------------------------------------------EYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 657 --------------------------------------------------~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
..+..++|++.|.++++.+|.+.++-+.+|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 112457788999999999999988888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHh
Q 004336 687 AVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVD--PNDQEMLELHSRV 755 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~--P~~~~~l~~~~r~ 755 (760)
.++...|++.+|+..|.++.+.-.+....|+. |.+|..+|+|..|++.|+.+++.. .++.+++..+.|+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 88888888888888888887766656666655 777777788888888888777632 3566666666654
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.9e-20 Score=202.33 Aligned_cols=273 Identities=16% Similarity=0.016 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
...+..|..+...|++++|+..+ .+++..+|++..+++.+|.++...|++++|+..+++++.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLF------------------IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHH------------------HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 45666788889999999999999 999999999999999999999999999999999999988
Q ss_pred hCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 504 HAASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 504 ~~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
..+.. ..++..+|.+|...|++++|+..|+++++.+|..
T Consensus 98 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------------------- 140 (389)
T PRK11788 98 RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA------------------------------------- 140 (389)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------------------------
Confidence 54332 3568899999999999999999999999887777
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH
Q 004336 580 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 652 (760)
Q Consensus 580 l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~ 652 (760)
..++..++.++...|++++|++.|+++++..+. ..+..+|.++...|++++|+..++++++..|.....+
T Consensus 141 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 141 ---EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred ---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 678888999999999999999999999886543 2566889999999999999999999999999776555
Q ss_pred HHHH----hcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCC
Q 004336 653 EKRS----EYCDRELTRADLEMVTQLDPLR-VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGD 727 (760)
Q Consensus 653 ~~~~----~~~~~~~A~~~l~kal~l~p~~-~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~ 727 (760)
..++ ..|++++|+..++++...+|.+ ...+..++.+|...|++++|+..+++++...|+...+...+.++...|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 4443 4589999999999999999876 4567889999999999999999999999999988766566888888899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 728 VLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 728 ~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
+++|+..++++++..|++.....++..
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 999999999999999999877655554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.5e-19 Score=217.12 Aligned_cols=325 Identities=14% Similarity=0.005 Sum_probs=267.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..+.+.+|....+...+..|.+. .++..++....+.|+.++|..++ +++....++.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~------~~l~q~~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~ 409 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANL------TRLDQLTWQLMQNGQSREAADLL------------------LQRYPFQGDA 409 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcccHHHHHHHH------------------HHhcCCCccc
Confidence 45689999999999888889986 99999999999999999999999 4444331111
Q ss_pred ---HHHHHHHHHHHHHc-------------------------CCH---HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 004336 475 ---GVLYFRQSLLLLRL-------------------------NCP---EAAMRSLQLARQHAAS--DHERLVYEGWILYD 521 (760)
Q Consensus 475 ---~~~~~~la~~~~~~-------------------------g~~---~~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~ 521 (760)
..+..+++.+|.+. |+. ..+...+.+++...|. ++.+++++|.++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 11222444444333 333 3345556666677788 99999999999998
Q ss_pred CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCC
Q 004336 522 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 522 ~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~ 598 (760)
|+.++|+..+.+++...|+......++..+... +++++|+..+++.... ...+..+|.++...|+
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~-----------Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV-----------EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC-----------CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence 899999999999999999875566667777777 9999999999877332 4567889999999999
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
+++|+.+|+++++.+|. ..+..++......|++++|+..++++++..|+ ...+..++ ..|+.++|+..+++++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999998766 45555666666779999999999999999996 66665543 5699999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
+++|+++.++.++|.++...|++++|+..|+++++..|+++.++.. +.++...|++++|+..|+++++++|++..+...
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~ 716 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL 716 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence 9999999999999999999999999999999999999999988844 999999999999999999999999999888766
Q ss_pred HHHhh
Q 004336 752 HSRVY 756 (760)
Q Consensus 752 ~~r~~ 756 (760)
+..+.
T Consensus 717 ~g~~~ 721 (987)
T PRK09782 717 TPEQN 721 (987)
T ss_pred hhHHH
Confidence 55443
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-19 Score=192.89 Aligned_cols=330 Identities=16% Similarity=0.144 Sum_probs=246.6
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
....|+..+..|+|+.|+.+|..++.++|.+. -.+.+...++...|+|++|+.-- .
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh------vlySnrsaa~a~~~~~~~al~da------------------~ 60 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH------VLYSNRSAAYASLGSYEKALKDA------------------T 60 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCcc------chhcchHHHHHHHhhHHHHHHHH------------------H
Confidence 44567788888899999999999999999986 44555777888899999998877 8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH----------------------------
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW---------------------------- 517 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~---------------------------- 517 (760)
+.++++|+.+..|.++|..+.-+|+|++|+..|.+.|+.+|++...+..|+.
T Consensus 61 k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 61 KTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred HHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 9999999999999999999999999999999999999888876555444443
Q ss_pred --------------------------------------------------------------------------------
Q 004336 518 -------------------------------------------------------------------------------- 517 (760)
Q Consensus 518 -------------------------------------------------------------------------------- 517 (760)
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV 220 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH
Confidence
Q ss_pred ------------HHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--
Q 004336 518 ------------ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-- 582 (760)
Q Consensus 518 ------------i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-- 582 (760)
..+...+++.|++.|..++.++ .. ..+.+.+.++... +.+.+.+....++.+.
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~-----------~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER-----------GKYAECIELCEKAVEVGR 288 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc-----------cHHHHhhcchHHHHHHhH
Confidence 3444445555555555555555 33 4444445555444 3333333322222111
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHH--
Q 004336 583 ---------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA-- 651 (760)
Q Consensus 583 ---------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~-- 651 (760)
+.+...+|..|...++++.|+.+|++++....+ ..+.......+++........-..|..+..
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r 362 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH
Confidence 334444666777777777777777777664332 233334444555555555555555533221
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCH
Q 004336 652 --YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDV 728 (760)
Q Consensus 652 --~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~ 728 (760)
.+.....|++..|+.+|.+++..+|+++..|.++|.+|.+.|.+..|+...+++++++|+....+++ +.++..+.+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2333456899999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 729 LGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 729 ~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
++|++.|+++++++|++.++.+.|.|..+
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.3e-18 Score=196.28 Aligned_cols=344 Identities=13% Similarity=0.092 Sum_probs=284.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.++..++.-++..|+|..+..+...++...-..+ ...+.++.+|..+..+|++++|..+|
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---~~aes~Y~~gRs~Ha~Gd~ekA~~yY------------ 330 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---IKAESFYQLGRSYHAQGDFEKAFKYY------------ 330 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHhhccHHHHHHHH------------
Confidence 344566777888888999999999999999988763332 22467899999999999999999999
Q ss_pred CcHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS----HCEEGLRKAE 533 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g----~~eeAl~~~~ 533 (760)
.++++.+|++ ...++.+|..|...|+++.|+.+|++.++..|++.+....||.+|...+ ..+.|..+..
T Consensus 331 ------~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 331 ------MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred ------HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999988 7788999999999999999999999999999999999999999998886 6789999999
Q ss_pred HHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 534 ESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--KGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 534 ~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
++++..|.+ ++|..++.++... .....++.+..|+..+..... ++..++++|..++..|++.+|...|..|+
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~-----d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQT-----DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 999999998 9999999999886 222225566666666555533 28999999999999999999999999998
Q ss_pred hh-----cchH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhh
Q 004336 611 KI-----RHTR-------AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQL 674 (760)
Q Consensus 611 ~~-----~~~~-------a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l 674 (760)
.. ++.. ..|++|+++...+++..|...|..+++.+|.....|..+. ..+...+|...+..++..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 85 2222 5899999999999999999999999999998888777663 236789999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHH------------cCCHHHHHHHHHHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLHLRAAFHEH------------TGDVLGALRDCRAAL 739 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~---~~~~l~a~~~~~------------~g~~~~A~~~~~~aL 739 (760)
+..++.++..+|..+....++..|.+-|+..+...... -.+.-.|.+|.+ .+.+++|++.|.++|
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777543322 222211334432 256899999999999
Q ss_pred hcCCCcHHH
Q 004336 740 SVDPNDQEM 748 (760)
Q Consensus 740 ~l~P~~~~~ 748 (760)
..+|.|.-+
T Consensus 640 ~~dpkN~yA 648 (1018)
T KOG2002|consen 640 RNDPKNMYA 648 (1018)
T ss_pred hcCcchhhh
Confidence 999988654
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=4.1e-19 Score=179.22 Aligned_cols=313 Identities=16% Similarity=0.111 Sum_probs=255.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.-++.+|..++.+|++.+|+..|-.++..+|++ ..+++..|.+|..+|+-..|+.-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl------------- 95 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDL------------- 95 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhH-------------
Confidence 3455668889999999999999999999999999999 489999999999999999998888
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHCCC
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYE------------GWILYDTSH 524 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~L------------g~i~~~~g~ 524 (760)
.+.+++.|+...+....|.+++++|++++|+..|++.++.+|++. ++...+ ...++..|+
T Consensus 96 -----~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 96 -----SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred -----HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999643 333222 233456788
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHH
Q 004336 525 CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAAD 604 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~ 604 (760)
+..|+....+.+++.|=+ +..+...+.+|...|++..|+.
T Consensus 171 ~~~ai~~i~~llEi~~Wd----------------------------------------a~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPWD----------------------------------------ASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred hhhHHHHHHHHHhcCcch----------------------------------------hHHHHHHHHHHHhcCcHHHHHH
Confidence 899999999988888776 6677777888888888888888
Q ss_pred HHHHHHhhc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH---HH-------------HHhcCCHHHHHH
Q 004336 605 CYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY---EK-------------RSEYCDRELTRA 666 (760)
Q Consensus 605 ~~~~Al~~~--~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~---~~-------------~~~~~~~~~A~~ 666 (760)
-++.+-++. .++.++.++.+++..|+.+.++...+..++.+|+....| .. ....+++.++++
T Consensus 211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle 290 (504)
T KOG0624|consen 211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLE 290 (504)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 888887754 448888888888888888888888888888888543322 11 123467778888
Q ss_pred HHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 667 DLEMVTQLDPLRVYP----YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 667 ~l~kal~l~p~~~~~----~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..++.++.+|..+.+ ...+..++...|++.+|+....+++.+.|++.... -++..|.....|+.|+..|++|++.
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888888885543 33456678888899999999999999999887666 5588888878899999999999999
Q ss_pred CCCcHHHHHHHHHhh
Q 004336 742 DPNDQEMLELHSRVY 756 (760)
Q Consensus 742 ~P~~~~~l~~~~r~~ 756 (760)
+|+|..+.+-+.+++
T Consensus 371 n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 371 NESNTRAREGLERAK 385 (504)
T ss_pred CcccHHHHHHHHHHH
Confidence 999988876665544
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.4e-19 Score=194.88 Aligned_cols=269 Identities=16% Similarity=0.130 Sum_probs=231.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
..+-+..+|+..|++.-..-++.. ..+..+|..|..+++|++|..+| +.+-...|.
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~------wvl~q~GrayFEl~~Y~~a~~~F------------------~~~r~~~p~ 385 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTG------WVLSQLGRAYFELIEYDQAERIF------------------SLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCch------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhccc
Confidence 334467899999999555556654 77888999999999999999999 777777776
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.....-....++..+.+--+---.-+..++.+|..++.|-.+|++|--+++++.|++.|++|++++|.+
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----------- 454 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----------- 454 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----------
Confidence 665555556666666555444445566788899999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~ 631 (760)
+.+|..+|.-+.....+|.|..+|++|+..+|. .+|+++|.+|.+++++
T Consensus 455 -----------------------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 455 -----------------------------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred -----------------------------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 788888999999999999999999999998877 8999999999999988
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
+.|.-+|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.
T Consensus 506 ------------------------------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 506 ------------------------------EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred ------------------------------hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 55566667777888888888899999999999999999999999999999
Q ss_pred cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 712 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 712 ~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++... .++.++..++++++|+..+++.-++-|++.-++-++.++-
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 98655 5599999999999999999999999999998887766654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=2.9e-17 Score=183.11 Aligned_cols=300 Identities=15% Similarity=0.028 Sum_probs=238.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
.+++......|.+.+..|+++.|.+.+.++.+..|+.. ..+...|.++.+.|+++.|..++
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~------~~~llaA~aa~~~g~~~~A~~~l------------- 141 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV------LNLIKAAEAAQQRGDEARANQHL------------- 141 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH-------------
Confidence 44666777888889999999999999999999988874 67778899999999999999999
Q ss_pred cHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 460 SLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 460 sl~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++.+..|++. .+....+.++...|++++|...++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 142 -----~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 142 -----EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred -----HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888888885 566667999999999999999999999999999999999999999999999999999999977
Q ss_pred cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---
Q 004336 539 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--- 614 (760)
Q Consensus 539 ~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--- 614 (760)
.... ..+.. .......-+...+..+++.+.+.++.+..|
T Consensus 217 ~~~~~~~~~~-------------------------------------l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 217 GLFDDEEFAD-------------------------------------LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred CCCCHHHHHH-------------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence 4433 11100 000111111223333344445555555332
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH----HHHHHH--hcCCHHHHHHHHHHHHhhCCCCh--HHHH
Q 004336 615 ---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS----AYEKRS--EYCDRELTRADLEMVTQLDPLRV--YPYR 683 (760)
Q Consensus 615 ---~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~----~~~~~~--~~~~~~~A~~~l~kal~l~p~~~--~~~~ 683 (760)
+..+..++..+...|++++|.+.++++++..|++.. .+.... .-++.+++...++++++.+|+++ ....
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 267777778888888888888888888887776653 222221 12567888999999999999999 8899
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 684 YRAAVLMDSHKENEAIAELS--RAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~--kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.+|+++++.|++++|.++|+ ++++..|++......+.++.+.|+.++|.++|++++.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 6888899988766668899999999999999999875
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.7e-17 Score=192.12 Aligned_cols=339 Identities=13% Similarity=0.013 Sum_probs=248.6
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.+..++...|++++|+.++++++ +|.+.. ..++..+|.++...|++++|+.++ +++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~----~~~llalA~ly~~~gdyd~Aiely------------------~ka 128 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----SRGLASAARAYRNEKRWDQALALW------------------QSS 128 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 44455555678888888888887 444420 134444467888888888888888 888
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|+..++++++.+|++ +++.
T Consensus 129 L~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 129 LKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888888888888888888888888875554 555666666777777888888888888887 6666
Q ss_pred HHHHHHHcccCCC------------------------------------Ccc-h--------------------------
Q 004336 547 LKAYALADSSQDS------------------------------------SCS-S-------------------------- 563 (760)
Q Consensus 547 ~la~~l~~~~~~~------------------------------------~~~-~-------------------------- 563 (760)
.+..++...+..+ ..+ .
T Consensus 208 ~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 208 NHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5544444332210 000 0
Q ss_pred ---------------hhhhHHHHHHhhhHhhc---c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------h--
Q 004336 564 ---------------TVVSLLEDALKCPSDRL---R--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH------T-- 615 (760)
Q Consensus 564 ---------------~~~~~leeAl~~~~~~l---~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~------~-- 615 (760)
...++..++++.|+... . |..+....|..|+..+++++|+..|++++...+ .
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 01122333333333331 1 144566678889999999999999998877431 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC------------c---HHHH----HHHHhcCCHHHHHHHHHHHHhhCC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN------------N---ASAY----EKRSEYCDRELTRADLEMVTQLDP 676 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~------------~---~~~~----~~~~~~~~~~~A~~~l~kal~l~p 676 (760)
.....|-.+|...+++++|..++++..+..|. + .... ..+...|+..+|.+.+++.+...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33467888888999999999999998875551 1 1111 112344899999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
.+...+..+|.++...|++.+|...++.+..+.|++..+... +..+..+|++.+|....+++++..|+++.+.++
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 999999999999999999999999999999999999887755 888888899999999999999999999987764
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-16 Score=166.05 Aligned_cols=344 Identities=15% Similarity=0.036 Sum_probs=271.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+|..|.++...|....|+..|..++...|-+- .||..|+.+..... ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W------~AWleL~~lit~~e-------~~---------------- 214 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFW------SAWLELSELITDIE-------IL---------------- 214 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcch------HHHHHHHHhhchHH-------HH----------------
Confidence 56788899999999999999999999999999884 77877776642211 11
Q ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 463 VIYQMLESDA--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 463 ~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
......-| .+...-+-++.++.+..+.++++.-+++.... -|.....-...|.+.+.+.++++|+..|+...+.+
T Consensus 215 --~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 215 --SILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred --HHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 22221223 33444556788888888899999888888887 67888888888999999999999999999999888
Q ss_pred CCh----HHHHHHHHHHHcc-----------cCCC---------CcchhhhhHHHHHHhhhHhhc--cH--HHHHHHHHH
Q 004336 540 RSF----EAFFLKAYALADS-----------SQDS---------SCSSTVVSLLEDALKCPSDRL--RK--GQALNNLGS 591 (760)
Q Consensus 540 p~~----~a~~~la~~l~~~-----------~~~~---------~~~~~~~~~leeAl~~~~~~l--~~--~~a~~~Lg~ 591 (760)
|.. +.+.+.-.+.... ..+. .+.-...+..++|+.+|++++ .| ..+|..+|.
T Consensus 293 PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH 372 (559)
T KOG1155|consen 293 PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH 372 (559)
T ss_pred CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH
Confidence 854 3332221111110 0111 111234577899999999994 34 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHH
Q 004336 592 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTR 665 (760)
Q Consensus 592 ~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~ 665 (760)
-|..+++...|++.|++|++++|. ++|++||++|..++-+.=|+-+|+++++..|++..++..++. .++.++|+
T Consensus 373 EyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999998 899999999999999999999999999999998888777753 48899999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004336 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-------ADLHLLH-LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 666 ~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-------p~~~~~~-l~a~~~~~~g~~~~A~~~~~~ 737 (760)
+.|..++.....+..++..+|.+|.+.++..+|..+|++-++.. |+...+. ..+..+.+.+++++|-.+..+
T Consensus 453 KCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 453 KCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743 2222222 458888888999999999999
Q ss_pred HHhcCCCcHHHHHHHHHhhc
Q 004336 738 ALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 738 aL~l~P~~~~~l~~~~r~~~ 757 (760)
++.-++.-.++..++..+.+
T Consensus 533 ~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 533 VLKGETECEEAKALLREIRK 552 (559)
T ss_pred HhcCCchHHHHHHHHHHHHH
Confidence 99998888777777666653
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-17 Score=178.32 Aligned_cols=281 Identities=14% Similarity=0.089 Sum_probs=230.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHH-HHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL-HMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~-lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+|.-++..+ +|.+-.+.++..+..+|-+. ..+-. +| ++...|+..+-..+-
T Consensus 248 ~~~ad~~y~~c-------~f~~c~kit~~lle~dpfh~------~~~~~~ia-~l~el~~~n~Lf~ls------------ 301 (611)
T KOG1173|consen 248 AEKADRLYYGC-------RFKECLKITEELLEKDPFHL------PCLPLHIA-CLYELGKSNKLFLLS------------ 301 (611)
T ss_pred HHHHHHHHHcC-------hHHHHHHHhHHHHhhCCCCc------chHHHHHH-HHHHhcccchHHHHH------------
Confidence 34455555556 99999999999999999996 44443 44 666777666555444
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+.+...|..+..|+..|..|...|++.+|.++|.++..++|....+|...|..+...|..++|+..|..|-++
T Consensus 302 ------h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 302 ------HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred ------HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 616 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~ 616 (760)
-|.. -.....+|.-|...++++-|..+|.+|+.+.|. -
T Consensus 376 ~~G~----------------------------------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl 415 (611)
T KOG1173|consen 376 MPGC----------------------------------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL 415 (611)
T ss_pred ccCC----------------------------------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch
Confidence 8877 345566888999999999999999999998877 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~ 696 (760)
++..+|.+.+..+.+.+|..+|+.++..-+ .+....+.-...+.+||.++.+.++++
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik-----------------------~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK-----------------------SVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh-----------------------hccccccchhHHHHhHHHHHHHHhhHH
Confidence 888999999999999999999998773322 111111222345678888888888888
Q ss_pred HHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 697 EAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 697 eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+|+..+++++...|.+...+-. |.+|..+|+++.|++.|.++|.++|++.-+-+++++.
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 8888888888888888877744 7888888888888888888888888887666666544
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=4.8e-17 Score=182.95 Aligned_cols=322 Identities=15% Similarity=0.092 Sum_probs=251.1
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+...++..+.+|++++|+.++.++++.+|.++ .+|+.||.+|.++|+.+++....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~------~ay~tL~~IyEqrGd~eK~l~~~----------------- 196 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP------IAYYTLGEIYEQRGDIEKALNFW----------------- 196 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch------hhHHHHHHHHHHcccHHHHHHHH-----------------
Confidence 3445556667777899999999999999999996 99999999999999999999887
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 542 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~- 542 (760)
-.+-.++|.+.+.|..++....++|++++|.-+|.+|++.+|.+....+..+.+|.++|++..|+..|.+++...|..
T Consensus 197 -llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 197 -LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred -HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 788889999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred -----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 543 -----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 543 -----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..-...+..+... +.-+.|++.+...+.. ...++.++.++....+++.|......-..
T Consensus 276 ~er~~d~i~~~~~~~~~~-----------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITH-----------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 1122223333333 3335566655555332 45667788999999999999887765543
Q ss_pred ----------------------h---c----ch-HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhc--c-CcHHHHHH---
Q 004336 612 ----------------------I---R----HT-RA-HQGLARVHFLKNNKTTAYEEMTKLIKKA--R-NNASAYEK--- 654 (760)
Q Consensus 612 ----------------------~---~----~~-~a-~~~La~~~~~~g~~~~A~~~l~~al~~~--~-~~~~~~~~--- 654 (760)
. . +. .+ ...++.+..+.++..+++..+. .+.. + ....+|..
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l--~~~n~~~~d~~dL~~d~a~ 422 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL--VEDNVWVSDDVDLYLDLAD 422 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH--HHhcCChhhhHHHHHHHHH
Confidence 0 0 00 23 4444555555555555544443 3333 3 22333332
Q ss_pred -HHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHH
Q 004336 655 -RSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 731 (760)
Q Consensus 655 -~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A 731 (760)
+...|++.+|+..+..++...+. +...|+.+|.+|+.+|.+++|+..|++++...|++.+.... +.++.+.|+.++|
T Consensus 423 al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 423 ALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 23448899999999999887764 45789999999999999999999999999999999988855 8888899999999
Q ss_pred HHHHHHHHhcC
Q 004336 732 LRDCRAALSVD 742 (760)
Q Consensus 732 ~~~~~~aL~l~ 742 (760)
.+.++...--|
T Consensus 503 lEtL~~~~~~D 513 (895)
T KOG2076|consen 503 LETLEQIINPD 513 (895)
T ss_pred HHHHhcccCCC
Confidence 99999877333
No 33
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.1e-17 Score=166.36 Aligned_cols=298 Identities=13% Similarity=0.029 Sum_probs=242.1
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
-+.-+..++-.-.+..|++. ..+..+|.++...|++++|+..| +++...+|.....
T Consensus 213 s~a~~t~l~le~~~~lr~Nv------hLl~~lak~~~~~Gdn~~a~~~F------------------e~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNE------HLMMALGKCLYYNGDYFQAEDIF------------------SSTLCANPDNVEA 268 (564)
T ss_pred chhhhHHHHHHhhccCCccH------HHHHHHhhhhhhhcCchHHHHHH------------------HHHhhCChhhhhh
Confidence 33444445555556666663 66666777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
.-..|.++...|++++-...-...+........-|+--|..++..++++.|+.+-+++|+.+|.+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~--------------- 333 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN--------------- 333 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc---------------
Confidence 77777777777777777777777776666666667777777777777777777777777777777
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
.+++...|..+...|+.++|+-.|+.|..+.|. +.+.+|..+|...|++.+|.
T Consensus 334 -------------------------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 334 -------------------------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred -------------------------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 678888899999999999999999999998876 88999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHH-hc-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 636 EEMTKLIKKARNNASAYEKRS-EY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~-~~-----~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
...+.++...|+++......+ .. --.++|.+.+++++.++|....+-..+|.++...|++.+++..+++.+...
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 999999999998887766552 11 135899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhccC
Q 004336 710 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHE 759 (760)
Q Consensus 710 p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~~ 759 (760)
||...-...+.+....+.+++|++.|..||.++|++..+++-+.++.+++
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 98765556688888889999999999999999999999999999988654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.3e-16 Score=184.93 Aligned_cols=342 Identities=9% Similarity=-0.059 Sum_probs=263.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
..+..+.+.+..|+++.|+..|+++++.+|+++ .+...+..++...|+.++|+.++
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------~av~dll~l~~~~G~~~~A~~~~------------------ 91 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------GQVDDWLQIAGWAGRDQEVIDVY------------------ 91 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------hhHHHHHHHHHHcCCcHHHHHHH------------------
Confidence 455566666777799999999999999999995 34447777888889999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++.+.++.++|+..++++...+|.+..
T Consensus 92 eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 92 ERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 88884445555556666889999999999999999999999999999999999999999999999999999999999833
Q ss_pred HHHHHHHHHcccC--------------CCCcchhhh---------h----------------------------------
Q 004336 545 FFLKAYALADSSQ--------------DSSCSSTVV---------S---------------------------------- 567 (760)
Q Consensus 545 ~~~la~~l~~~~~--------------~~~~~~~~~---------~---------------------------------- 567 (760)
+..++.++..... +|...+... +
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 3555555532211 111111000 0
Q ss_pred --------------HHHHHHhhhHhhcc-----H------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHHHH
Q 004336 568 --------------LLEDALKCPSDRLR-----K------GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQ 619 (760)
Q Consensus 568 --------------~leeAl~~~~~~l~-----~------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~ 619 (760)
..+.|+..+...+. | ..+....-.++...|++.++++.|+...... |+.+..
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 00111111111111 0 1112223345667889999999998877543 558899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccC----------cHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARN----------NASAYEKRSEYCDRELTRADLEMVTQLDP------------- 676 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~----------~~~~~~~~~~~~~~~~A~~~l~kal~l~p------------- 676 (760)
..|..|...+++++|...|++++...+. ...++......+++++|...+++.....|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 9999999999999999999999886531 13456666788999999999999988555
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 677 --LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 677 --~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+.......++.++...|++.+|++.+++.+...|.+..+.+. |.++...|.+.+|...++.++.++|++..+.-
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 223456778999999999999999999999999999988855 99999999999999999999999999887653
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.6e-18 Score=178.41 Aligned_cols=239 Identities=16% Similarity=0.131 Sum_probs=206.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
-..|.++...|..++..|++-.|...|++++.++|.+. ..|..++.+|....+.++-...|
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~------~lyI~~a~~y~d~~~~~~~~~~F------------- 383 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN------SLYIKRAAAYADENQSEKMWKDF------------- 383 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc------hHHHHHHHHHhhhhccHHHHHHH-------------
Confidence 34578888899999999999999999999999999885 66888999999999999988888
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++..++|.++++|+..|.+++-++++++|+..|++++.++|++..++..++.+.+++++++++...|+.+++..
T Consensus 384 -----~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF 458 (606)
T KOG0547|consen 384 -----NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF 458 (606)
T ss_pred -----HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
|+. ++.++..|.++.++++|++|++.|..++.+.|. ..
T Consensus 459 P~~----------------------------------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 459 PNC----------------------------------------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred CCC----------------------------------------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 998 788888899999999999999999999987665 11
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 618 ------HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 618 ------~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
+.+-|.+..+ | -+++..|+..+++|+++||..-.++..||.+..+
T Consensus 499 ~v~~~plV~Ka~l~~q---w--------------------------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQ---W--------------------------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred cccchhhhhhhHhhhc---h--------------------------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 1122211111 1 1456888888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 004336 692 SHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~ 711 (760)
+|+.++|+++|+++..+...
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999876544
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=4.8e-17 Score=188.09 Aligned_cols=247 Identities=12% Similarity=-0.009 Sum_probs=195.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc---------cCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~---------g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
+++++|+..|+++++++|+++ .++..+|.++... +++++|...+ +++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~------------------~~A 330 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFDKQNAMIKAKEHA------------------IKA 330 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH------------------HHH
Confidence 467899999999999999996 7888888776543 3377888888 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~----- 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR----- 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-c--hHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-H--TRAHQGLARV 624 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~-~--~~a~~~La~~ 624 (760)
...+..++.+++..|++++|+..++++++.. | +.++..+|.+
T Consensus 406 -----------------------------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 406 -----------------------------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred -----------------------------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 4444555666777899999999999998754 3 3678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
+...|++++|...+.++.... |........++..|...|+ +|...+++
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQE------------------------------ITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhcc------------------------------chhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 999999988777776654443 4444555566777777763 66666666
Q ss_pred HHHc---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 705 AIAF---KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 705 al~~---~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
.++. .+.+.. ....++.-.|+.+.|... +++.+.+
T Consensus 499 ll~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 499 FLESEQRIDNNPG--LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhHhhcCch--HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5442 222221 245556556777666665 6655543
No 37
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=1.8e-19 Score=184.24 Aligned_cols=145 Identities=22% Similarity=0.318 Sum_probs=130.1
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCC--CChhhH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNG--VTPNLL 255 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~--~~~~~v 255 (760)
++...||+|+|++++|||||++||+.|.|||||++|||.|+.+..|.|. ..+.+++++++.|+|||++.. +..+..
T Consensus 41 ~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~l 118 (620)
T KOG4350|consen 41 SEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDIL 118 (620)
T ss_pred cCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHH
Confidence 3457899999999999999999999999999999999999999999996 678999999999999999952 568899
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~ 325 (760)
.+.|..|+++++..|..+..+||+.-+ ..+|...+++.|...+-+.|...|+.|.-++-.+.+..+.|.
T Consensus 119 ld~LslAh~Ygf~~Le~aiSeYl~~iL-~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn 187 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQLETAISEYLKEIL-KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFN 187 (620)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHH-cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchh
Confidence 999999999999999999999999988 678888899999999999999999999877766555544443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=9.8e-16 Score=170.02 Aligned_cols=306 Identities=13% Similarity=0.006 Sum_probs=231.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
...++...+..|.+.+..|+|+.|++...+.-...+ ++ .-.+...+....+.|+++.|..++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p-----~l~~llaA~aA~~~g~~~~A~~~l------------ 141 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP-----VVNYLLAAEAAQQRGDEARANQHL------------ 141 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch-----HHHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 345677788889999999999999977776544332 33 133344466669999999999999
Q ss_pred CcHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+
T Consensus 142 ------~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 142 ------ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred ------HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998854 4445699999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcc
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRH 614 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~ 614 (760)
..+.. +....+- ..++..+........+-+...+.++..-+ .+.
T Consensus 216 ~~~~~~~~~~~l~---------------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 216 AHVGDEEHRAMLE---------------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred cCCCCHHHHHHHH---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence 76554 1110000 01111111111222233333333333222 223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 615 TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR--SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 615 ~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~--~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
+.+...++..+...|+.++|...+++.++..+ +....... ...++.++++..+++.++.+|+++..+..+|.++...
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 36777888888888888888888888888444 33322221 2347888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 693 HKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
|++++|.++|+++++..|++......+.++.+.|+.++|..+|++++.+.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999887778999999999999999999998754
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=7e-17 Score=171.84 Aligned_cols=230 Identities=14% Similarity=0.005 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
..+.++..+.+++...|-.+ ......++.+|.++...|++++|+..+ .++++.+|+++.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~--~~~a~~~~~~g~~~~~~g~~~~A~~~~------------------~~Al~l~P~~~~a 100 (296)
T PRK11189 41 QQEVILARLNQILASRDLTD--EERAQLHYERGVLYDSLGLRALARNDF------------------SQALALRPDMADA 100 (296)
T ss_pred HHHHHHHHHHHHHccccCCc--HhhHHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHcCCCCHHH
Confidence 66778888888886444332 111467888999999999999999888 9999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
|+.+|.++...|++++|+..|+++++++|++..++.++|.+++..|++++|+..++++++.+|++
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~--------------- 165 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND--------------- 165 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
+... ....+....+++++|+..|.++....++..+. .+.++...|+..++ ..
T Consensus 166 -------------------------~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 166 -------------------------PYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TL 217 (296)
T ss_pred -------------------------HHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HH
Confidence 2100 11122345678999999998777654433332 45666667766443 23
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
++.+ ...++...+++|....+|+++|.++.+.|++++|+.+|+++++.+|.+.
T Consensus 218 ~~~~-----------------------~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 218 MERL-----------------------KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHH-----------------------HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3322 2222334455677788999999999999999999999999999997443
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.9e-16 Score=163.31 Aligned_cols=355 Identities=16% Similarity=0.160 Sum_probs=279.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc-c---------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD-R--------- 451 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~-~--------- 451 (760)
+...+..+|..+.+.|.|++|+..|+......|+. -+-++|-+++...|+-++-.+.|+..- -
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~-------~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF-------IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH-------HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 34556788999999999999999999999999998 455567778888888777666553211 1
Q ss_pred ccccCCcCcHHHHHHHHHh-----------------------------CCC--------------------cHHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLES-----------------------------DAP--------------------KGVLYFRQS 482 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~-----------------------------~p~--------------------~~~~~~~la 482 (760)
-+..+|+.. ..+.+++.. .|+ -.++-.+.+
T Consensus 348 i~~~ddp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 348 IKEKDDPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred cCCcCCcch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 011222220 001111110 011 112233455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCC
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 558 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~-~a~~~Lg~i~~~~--g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~ 558 (760)
.-|++.|+++.|++.++-.-+.+.... .+-.+|..+++.+ .++.+|.++...++.++..+ .+..+.|.+....
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n--- 503 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN--- 503 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec---
Confidence 688899999999998876554443332 3455666666664 47889999999999998888 7777777776666
Q ss_pred CCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcchHHHHHHHHHHHHcCCHH
Q 004336 559 SSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK--IRHTRAHQGLARVHFLKNNKT 632 (760)
Q Consensus 559 ~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~~a~~~La~~~~~~g~~~ 632 (760)
|.+++|.+.|..++.. .++++++|..+..+|++++|+++|-+.-. .+...+++.++.+|..+.+..
T Consensus 504 --------gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 504 --------GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred --------CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 9999999999999765 88999999999999999999999988665 455699999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 633 TAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 633 ~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+|++++.++...-|+++.+...++. .|+..+|.+.+-...+..|.+.+..-+||.-|....=+++|+.+|+++--+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 9999999999999988887777653 377888999988889999999999999999999999999999999999999
Q ss_pred CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 709 KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 709 ~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
.|+...+.+. +.++.+.|+|++|.+.|+..-...|.+-+.+.++-|+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9998888755 8888899999999999999999999999999887775
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.5e-16 Score=165.25 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=185.8
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.+.|.+...+.|+++|+..|+.+++.+|-.. +-......++.-..+-.+ +.++ .+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------~dmdlySN~LYv~~~~sk-Ls~L-----------------A~~ 321 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRL------DDMDLYSNVLYVKNDKSK-LSYL-----------------AQN 321 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc------hhHHHHhHHHHHHhhhHH-HHHH-----------------HHH
Confidence 4556677777799999999999999998763 333333333222222111 1122 044
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
+...+.-.++...-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|..+.+...|+..|++|++++|.+ .+|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 4455555556666667777777777777777777777777777777777777777777777777777777777776 666
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
+.+|++|.-. +...=|+-+|+++ ++| ...|..||.+|.+.++.++|+.+|.+++..+.+ .++.
T Consensus 402 YGLGQaYeim-----------~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 402 YGLGQAYEIM-----------KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred hhhhHHHHHh-----------cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 6666666665 4455555555555 222 788888999999999999999999998887666 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi 699 (760)
.||.+|.+.++..+|..+|++.++... .....+|....+...||.-+.+.+++++|.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~-----------------------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSE-----------------------LEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------hhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 889999998888888888887766432 111233444456667899999999999999
Q ss_pred HHHHHHHHcCCC
Q 004336 700 AELSRAIAFKAD 711 (760)
Q Consensus 700 ~~l~kal~~~p~ 711 (760)
.+..+++...+.
T Consensus 528 ~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 528 YYATLVLKGETE 539 (559)
T ss_pred HHHHHHhcCCch
Confidence 999888876443
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1e-13 Score=150.69 Aligned_cols=368 Identities=14% Similarity=0.101 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHH
Q 004336 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 443 (760)
Q Consensus 364 ~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~ 443 (760)
.+..+|++.+++.....+.-.++.++- -|+.|...+.++-+.-|..+ +.|..-+.+-...|+.+.-.
T Consensus 394 darilL~rAveccp~s~dLwlAlarLe-------tYenAkkvLNkaRe~iptd~------~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 394 DARILLERAVECCPQSMDLWLALARLE-------TYENAKKVLNKAREIIPTDR------EIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHhcCCHHHHH
Confidence 377889999999888777777777777 89999999999999999997 66666777777777766544
Q ss_pred HHHhhhcc-------------c----cccCCcC-----------------------------------------cHHHHH
Q 004336 444 CWLQLYDR-------------W----SSVDDIG-----------------------------------------SLSVIY 465 (760)
Q Consensus 444 ~~l~l~~~-------------~----~~~~d~~-----------------------------------------sl~~~~ 465 (760)
.++..+-. | .+..+.+ +.++|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 33321110 0 0000000 345577
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA 544 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a 544 (760)
.+++..|.+-.+|.+.+..-..-|-.+.-...+++++...|.....|...+..+...|+...|...+.++++.+|++ +.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88888898889999888888888999999999999999999988889999999999999999999999999999999 88
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
|+....+.... ..+++|...+.++... ..+|..-+.+...+++.++|++.++++++..|. ..|.
T Consensus 621 wlaavKle~en-----------~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 621 WLAAVKLEFEN-----------DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred HHHHHHHhhcc-----------ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 88888887777 7888888888887443 678888888888999999999999999998777 8899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
.+|+++.++++.+.|...|...++..|....++..++.. |..-+|...++++.-.+|++...|......-.+.|+.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999999999999999999887777666543 6778899999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHH------------------------------HH-HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 696 NEAIAELSRAIAFKADLHLLH------------------------------LR-AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~------------------------------l~-a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
++|.....+|++-.|.+..+| +. +..+....++++|.+.|.+++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 999999999998777554333 11 33333447899999999999999999
Q ss_pred cHHHHHHHHHh
Q 004336 745 DQEMLELHSRV 755 (760)
Q Consensus 745 ~~~~l~~~~r~ 755 (760)
+.+++..+-+.
T Consensus 850 ~GD~wa~fykf 860 (913)
T KOG0495|consen 850 NGDAWAWFYKF 860 (913)
T ss_pred cchHHHHHHHH
Confidence 99987665443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=7.9e-18 Score=178.16 Aligned_cols=257 Identities=22% Similarity=0.198 Sum_probs=99.9
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
.++.+++..|++++|.+.+.+.+... |+++ ..+..+|.+....++++.|+..+ +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~------~~~~~~a~La~~~~~~~~A~~ay------------------~ 68 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP------EYWRLLADLAWSLGDYDEAIEAY------------------E 68 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc------ccccccccccccccccccccccc------------------c
Confidence 44666666678888888886554443 6664 66677888888888888888888 7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc--CChH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFE 543 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~--p~~~ 543 (760)
+++..++.++..+.+++.+ ...+++++|+..++++.+.. .++..+.....++...|+++++...++++.... +.+
T Consensus 69 ~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 145 (280)
T PF13429_consen 69 KLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS- 145 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred ccccccccccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-
Confidence 8888887777777777777 68888888888888877655 346666777777888888888888888766433 222
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
...+..+|.++.+.|++++|+..|+++++.+|. .+...+
T Consensus 146 ---------------------------------------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 146 ---------------------------------------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 567778888888888888888888888887776 677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
+.++...|+++++...++.. ....|.++..+..+|.++...|++++|+..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRL------------------------------LKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHH------------------------------HHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHH------------------------------HHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 88888888776655555433 333356666777889999999999999999
Q ss_pred HHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 702 LSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
|++++...|+++.+... +.++...|+.++|.+++++++.
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 99999999988877754 8888888999999999888875
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=6.2e-16 Score=178.84 Aligned_cols=222 Identities=15% Similarity=-0.018 Sum_probs=182.3
Q ss_pred cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 004336 437 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---------NCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 437 g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~Ai~~l~kal~~~p~ 507 (760)
+.+++|+.++ +++++.+|+++.++..+|.++... +++++|+..++++++++|+
T Consensus 275 ~~~~~A~~~~------------------~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 275 YSLQQALKLL------------------TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 3456788888 999999999999999999887643 3489999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 587 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~ 587 (760)
++.++..+|.++...|++++|+..|+++++++|++ +.+++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----------------------------------------~~a~~ 376 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----------------------------------------ADIKY 376 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------------------------HHHHH
Confidence 99999999999999999999999999999999999 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHH
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 665 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~ 665 (760)
.+|.++...|++++|+..|+++++.+|. ..+..++.+++..|++++|+..+++++...
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------------- 436 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------------------- 436 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--------------------
Confidence 9999999999999999999999998887 445556666777887766666655444332
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh---c
Q 004336 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALS---V 741 (760)
Q Consensus 666 ~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~---l 741 (760)
.|+.+..+.++|.++...|++++|+..+.++....|+..... ..+..|...|+ +|...+++.++ .
T Consensus 437 ---------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 437 ---------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred ---------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 256677788899999999999999999999888888766555 44667777674 77776766654 3
Q ss_pred CCCcHH
Q 004336 742 DPNDQE 747 (760)
Q Consensus 742 ~P~~~~ 747 (760)
.|.++.
T Consensus 506 ~~~~~~ 511 (553)
T PRK12370 506 IDNNPG 511 (553)
T ss_pred hhcCch
Confidence 444443
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=1.3e-15 Score=147.54 Aligned_cols=206 Identities=17% Similarity=0.086 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+...+|.-|++.|++..|...++++++++|++..+|..++.+|...|+.+.|-+.|+++++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 45778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cchHHHHHHHHHHHHcCC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~~a~~~La~~~~~~g~ 630 (760)
+++++|.|..+..+|+|++|...|++|+.- .+..++-++|.|..+.|+
T Consensus 103 ----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 103 ----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 899999999999999999999999999982 333899999999999999
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
++.|... |+++++++|+.+.....++...+..|++..|..++++.....+
T Consensus 155 ~~~A~~~------------------------------l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 FDQAEEY------------------------------LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred chhHHHH------------------------------HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 8555554 4555666677777777889999999999999999998887655
Q ss_pred Cc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 711 DL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 711 ~~-~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-. ..++++..+-...||.+.|-++=.+.-...|...+.-.
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 43 46778899999999999999888888888998876543
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=1.5e-15 Score=154.22 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=181.7
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..+++++..+|++. .++..+|.++...|++++|..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~-------------- 88 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY------LAYLALALYYQQLGELEKAEDSF-------------- 88 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 4567788899999999999999999999999999985 88899999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++++...|.+...++.+|.++...|++++|++.+++++... +.....+..+|.++...|++++|...+++++..
T Consensus 89 ----~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 89 ----RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred ----HHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999854 556778999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 616 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~ 616 (760)
+|++ ..++..+|.++...|++++|...+++++...+. .
T Consensus 165 ~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 165 DPQR----------------------------------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred CcCC----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9988 677888999999999999999999999986444 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
.+..++.++...|+.++|..+.+.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 77788999999999999998887765543
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=1.8e-15 Score=153.51 Aligned_cols=201 Identities=18% Similarity=0.136 Sum_probs=173.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
..+..++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------
Confidence 3478899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHc
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----TRAHQGLARVHFLK 628 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~~a~~~La~~~~~~ 628 (760)
..++.++|.++...|++++|+..|++++...+ ...+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 67888899999999999999999999997421 26788899999999
Q ss_pred CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 629 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
|++++|...+.+++ ..+|.+...+..+|.++...|++++|+..+++++..
T Consensus 149 g~~~~A~~~~~~~~------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRAL------------------------------QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHH------------------------------HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98866666666554 445556667778899999999999999999999998
Q ss_pred CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 709 KADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 709 ~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.|+++... ..+.++...|+.++|....+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77776544 558888888999999998888776654
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-15 Score=160.63 Aligned_cols=304 Identities=17% Similarity=0.121 Sum_probs=224.7
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
...|......|+++.|+.++ ..++.++|.+...|.+.+.+|..+|+|++|++.-.+.++++|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~------------------t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p 67 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLF------------------TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP 67 (539)
T ss_pred HHHHHhhcccccHHHHHHHH------------------HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHccc----------------CCCCc-----chh
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS----------------QDSSC-----SST 564 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~----------------~~~~~-----~~~ 564 (760)
+.+..|..+|..+.-+|+|++|+..|.+.++.+|++ ..+..++.++.... .++.. ...
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 999999999999999999999999999999999999 66666665552210 00000 000
Q ss_pred h-------------------hhHHHHHHhhhH---------------------------------hhc------cHHHHH
Q 004336 565 V-------------------VSLLEDALKCPS---------------------------------DRL------RKGQAL 586 (760)
Q Consensus 565 ~-------------------~~~leeAl~~~~---------------------------------~~l------~~~~a~ 586 (760)
. ..++..+.-... +.. ..+...
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 0 000011100000 000 014456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH-----------
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK----------- 654 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~----------- 654 (760)
-.+|.......++..|++.|..+++++.. ..+.+.+-+|+..|.+.+.+....++++.....-.-+..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 67888888888888888888888887733 556667777777777777776666666554421111111
Q ss_pred HHhcCCHHHHHHHHHHHH--------------------------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 655 RSEYCDRELTRADLEMVT--------------------------QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal--------------------------~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
....++++.|+..|++++ -++|.-..--..-|..++..|+|.+|+..|.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111134455555554443 345555555667799999999999999999999999
Q ss_pred CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 004336 709 KADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEM 748 (760)
Q Consensus 709 ~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~ 748 (760)
+|+++.++ -++.+|.++|++..|+++.+++++++|+....
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 99999888 55999999999999999999999999987754
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.72 E-value=2.7e-15 Score=151.80 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.-.+.+|.-+...|++..|+..+ ..+++.+|++..++|+.|.+|+..|+-..|+..+.+.++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~y------------------HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHY------------------HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 55666888888899999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
+.|+...+....|.++.++|++++|...|+.++..+|++ +++..++.+-.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e-------------------------- 154 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE-------------------------- 154 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH--------------------------
Confidence 999999999999999999999999999999999999977 33333322211
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH-
Q 004336 580 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS- 656 (760)
Q Consensus 580 l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~- 656 (760)
-..+......+...|++..|+......+++.|- ..+...+.+|...|++..|+..++.+-++..++.......+
T Consensus 155 ---~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 155 ---HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred ---HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 234444556677889999999999999998887 66778899999999999999999999998887766655543
Q ss_pred ---hcCCHHHHHHHHHHHHhhCCCChHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH---
Q 004336 657 ---EYCDRELTRADLEMVTQLDPLRVYPYRY------------RAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--- 718 (760)
Q Consensus 657 ---~~~~~~~A~~~l~kal~l~p~~~~~~~~------------La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~--- 718 (760)
..|+.+.++..++..+.++|+.-..+-. -+......++|.++++..++.+...|....+.++
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 3489999999999999999998654421 1334567789999999999999999996655422
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 719 --AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 719 --a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-.++..-|++.+|++.+.++|.++|++.+++.
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 55666779999999999999999999888763
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=3e-14 Score=154.65 Aligned_cols=353 Identities=14% Similarity=0.054 Sum_probs=261.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH----------------h
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL----------------Q 447 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l----------------~ 447 (760)
..|..-+..+..++.++-|+..|..+|+.+|....+ |...+..-...|..+.-..++ -
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl------Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL------WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 356666666677778888888888888888877633 333333333444444333333 1
Q ss_pred hhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Q 004336 448 LYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 448 l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ee 527 (760)
...+|.+.+-+.+...+.++++.+|.+.++|+.--.+..+..+++.|...|.++....|. ..+|+.-+.+...+++.++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHH
Confidence 233444444444555568888888888888887777888888888888888888776553 4667777777788888888
Q ss_pred HHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHH
Q 004336 528 GLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 528 Al~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA 602 (760)
|+..++++++..|++ ..|..+|.++... +..+.|.+.|...++. ...|..++.+-...|+.-.|
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~-----------~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQM-----------ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHH-----------HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 888888888888888 8888888888887 8888888888888665 67788888888888888888
Q ss_pred HHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Q 004336 603 ADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVY 680 (760)
Q Consensus 603 ~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~ 680 (760)
...++++.-.+|. ..|....+.-.+.|+.+.|...+.++++..|..+.++.......-...-......|++....++.
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 8888888877666 55666667777888888888888888888888877776543321111113334455566667778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+...|..+....++++|.+.|.+++..+|++.+.| .--.++...|.-++-.+.+.+....+|.|.+.+...++
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 888899999999999999999999999999999888 33666777799999999999999999999988765443
No 51
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.72 E-value=1.2e-17 Score=150.70 Aligned_cols=101 Identities=26% Similarity=0.452 Sum_probs=91.7
Q ss_pred CccceeEEEEec-CeEeehhHHHHhcCCHHHHhhccCC-CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCC-hhh
Q 004336 178 DQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PNL 254 (760)
Q Consensus 178 ~~~~~dv~~~~~-~~~~~~hr~~la~~s~yf~amf~~~-~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~-~~~ 254 (760)
++.+|||+|.++ +.+|+|||.+|+++|+||+.||.++ +.++...+|.++ ++++++++.+++|+|||++. ++ .++
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~-~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE-INSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE-EE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc-CCHHHH
Confidence 457899999999 7999999999999999999999998 788887789997 89999999999999999997 98 999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+.+++.+|++|+++.|++.|..+|...
T Consensus 84 ~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999764
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=157.48 Aligned_cols=234 Identities=18% Similarity=0.074 Sum_probs=206.7
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.++|..|+..|.+.+|.+.++..|+..|.- +.+.+|+.+|.+..++..|+..+ .+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~------------------~~ 281 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVI------------------GE 281 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHH------------------hh
Confidence 467888888889999999999999998765 88999999999999999999999 99
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
.+...|.+...+..++.++...+++++|.++|+.+++.+|.+.++...+|.-|+..|+.+-|+.+|++.+++.-.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---- 357 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---- 357 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ch---HHHHHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT---RAHQGL 621 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~--~~---~a~~~L 621 (760)
++.+.|+|.+.+..++++-++..|++|+... +. ++|+++
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 8899999999999999999999999999842 22 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.+....|++.-|. ..|+-++..||++.+++++||.+-.+.|+.++|..+
T Consensus 402 g~vaV~iGD~nlA~------------------------------rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAK------------------------------RCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred ceeEEeccchHHHH------------------------------HHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 99998888885444 445555666777777788888888888888888888
Q ss_pred HHHHHHcCCCcHHH
Q 004336 702 LSRAIAFKADLHLL 715 (760)
Q Consensus 702 l~kal~~~p~~~~~ 715 (760)
+..|-...|+....
T Consensus 452 l~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 452 LNAAKSVMPDMAEV 465 (478)
T ss_pred HHHhhhhCcccccc
Confidence 88888888875533
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=4.7e-15 Score=157.85 Aligned_cols=204 Identities=18% Similarity=0.117 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.+..|+.+|.++...|++++|+..|+++++++|+++ .++..+|.++...|++++|+..+
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~g~~~~A~~~~------------ 121 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------DAYNYLGIYLTQAGNFDAAYEAF------------ 121 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 346688899999999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++++.+|++..+++++|.++...|++++|++.|+++++.+|+++..... ..+....+++++|+..+++++..
T Consensus 122 ------~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 122 ------DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ------HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999843222 23445678999999999887754
Q ss_pred c-CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 539 K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 539 ~-p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
. |+...+ +......+. . .. ...++.+.+.++... +...+|+++|.++...|++++|+.+|+++++.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~--~--~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGK--I--SE-ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccC--C--CH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 332222 111111100 0 00 012222322222221 115678888888888888888888888888876
Q ss_pred ch
Q 004336 614 HT 615 (760)
Q Consensus 614 ~~ 615 (760)
|.
T Consensus 267 ~~ 268 (296)
T PRK11189 267 VY 268 (296)
T ss_pred Cc
Confidence 53
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.3e-14 Score=161.53 Aligned_cols=305 Identities=13% Similarity=0.048 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...|......|++++|..++ ..++..+|.++.+|+.+|.+|..+|+.+++...+-.|-.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~------------------~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEIL------------------MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 45555666777889999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
++|++.+-|..++....++|++++|.-+|.+|++.+|.+ +..+..+..+... |....|...+.+.++-
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~-----------G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT-----------GDLKRAMETFLQLLQL 270 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----------ChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999 8999999999998 9999999998888332
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c-
Q 004336 583 ---------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKA--R- 646 (760)
Q Consensus 583 ---------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~--~- 646 (760)
-+.-...+..+...++-+.|++.++.++..... ..+.-++.++....+++.|........... +
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 233344577778888889999999999984332 677788999999999999988877654410 0
Q ss_pred --------------------------CcHHHHHHHH--hc--CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Q 004336 647 --------------------------NNASAYEKRS--EY--CDRELTRADLEMVTQLDP-LRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 647 --------------------------~~~~~~~~~~--~~--~~~~~A~~~l~kal~l~p-~~~~~~~~La~~~~~~g~~ 695 (760)
+...+..... .. .+..+++..+..--...| +++..+..++.+|.+.|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1111111111 11 223333333322222223 4567889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 696 NEAIAELSRAIAFKADLH-LLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~-~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
.+|+.++..+....+... .+|+. |.+|..+|.+++|++.|++++.+.|+|.++.-.++-+.+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 999999999988766544 45555 999999999999999999999999999998765555543
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=5.5e-15 Score=143.32 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=182.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+..++|.-|+.+|++..|...++++|+.+|++. .++..++.+|...|+.+.|.+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~Y------------- 92 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESY------------- 92 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHH-------------
Confidence 34566777888889999999999999999999999995 99999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
++++.++|++++++.+.|..+..+|++++|+..|++|+.. .+.....+.++|.+..+.|+++.|...|+++++
T Consensus 93 -----rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 93 -----RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 356678999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
++|++ +.....++...++.|+|..|..++++.....+.
T Consensus 168 ~dp~~----------------------------------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 168 LDPQF----------------------------------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred hCcCC----------------------------------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccH
Confidence 99999 777888899999999999999999888764333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
+.+....++....|+.+.+..+=.++....|..
T Consensus 208 ~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 208 ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 666667788888999988888877777777744
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=9.3e-17 Score=169.98 Aligned_cols=240 Identities=20% Similarity=0.128 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+.+|.++...|++++|++.+++.+.. .|++...|..+|.+....|++++|+..|++++..++..
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~------------ 77 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN------------ 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------
Confidence 3457799999999999999999776554 48899999999999999999999999999999988777
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTT 633 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~ 633 (760)
+..+..++.+ ...+++++|+..++++.+..+. ..+.....++...|++++
T Consensus 78 ----------------------------~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 78 ----------------------------PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ----------------------------cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 3333444444 4555555555555555543332 344444555555556655
Q ss_pred HHHHHHHHHHhc--cCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 634 AYEEMTKLIKKA--RNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 634 A~~~l~~al~~~--~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
+...++++.... +.+...+..++ ..|+.++|+..++++++.+|+++.+...+++++...|+.+++.+.++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555555544333 23333333222 235667777788888888889999999999999999999999998888888
Q ss_pred cCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 708 FKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 708 ~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..|+++.++ ..+.++..+|++++|+..|+++++.+|+|+.++..|..+-.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 777777665 44888999999999999999999999999999888776643
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.5e-15 Score=160.48 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=201.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+..+=..+--+.+...|+.+ -.|+.+|.-|...|++.+|..++ .++..++|..
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a------~sW~aVg~YYl~i~k~seARry~------------------SKat~lD~~f 345 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKA------LSWFAVGCYYLMIGKYSEARRYF------------------SKATTLDPTF 345 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCC------cchhhHHHHHHHhcCcHHHHHHH------------------HHHhhcCccc
Confidence 33365555555568889999997 88999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
+.+|...|..+.-.|+.++|+.+|..|-++-|.......++|.-|..+++++-|...|.+|+.+.|++
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D------------ 413 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD------------ 413 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---------HHHHHHHHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVH 625 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---------~a~~~La~~~ 625 (760)
+-+++.+|.+.+..+.|.+|..+|+.++..-+. ..+.+||.++
T Consensus 414 ----------------------------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 414 ----------------------------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred ----------------------------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 788999999999999999999999999952111 4688999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
.+.+++++|+ ..+++++.+.|.++.++..+|.+|..+|+++.|++.|.++
T Consensus 466 Rkl~~~~eAI------------------------------~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 466 RKLNKYEEAI------------------------------DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHhhHHHHH------------------------------HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9998885554 5555666777778888888899999999999999999999
Q ss_pred HHcCCCcHHHH
Q 004336 706 IAFKADLHLLH 716 (760)
Q Consensus 706 l~~~p~~~~~~ 716 (760)
+.++|++....
T Consensus 516 L~l~p~n~~~~ 526 (611)
T KOG1173|consen 516 LALKPDNIFIS 526 (611)
T ss_pred HhcCCccHHHH
Confidence 99999996444
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.2e-15 Score=162.85 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=170.9
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
+..|..+.+.|...+|.-.| +.++..+|.++++|..||.+..+.++-..|+..++++++++|
T Consensus 289 f~eG~~lm~nG~L~~A~Laf------------------EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAF------------------EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred HHHHHHHHhcCCchHHHHHH------------------HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 45788888899999998888 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 586 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~ 586 (760)
++.+++..||..|...|.-.+|+..+.+-|...|.+ .+ +...-.........+......+...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y-~~--l~~a~~~~~~~~~~s~~~~~~l~~i-------------- 413 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY-VH--LVSAGENEDFENTKSFLDSSHLAHI-------------- 413 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc-hh--ccccCccccccCCcCCCCHHHHHHH--------------
Confidence 999999999999999999999999999999988766 00 0000000000000000000111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----c
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKIRH----TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----Y 658 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~ 658 (760)
.+.|..+....+ +++...||.+|+..|+|+.|+++|+.++...|++..+++.++. -
T Consensus 414 ----------------~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 414 ----------------QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred ----------------HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 122222222222 1555556666666666666666666666666666555555432 2
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
.+..+|+..|.+|+++.|....++++||..++..|.|++|+++|-.|+.+.+.
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 35578888888999999999999999999999999999999999999987654
No 59
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.68 E-value=5.6e-13 Score=161.90 Aligned_cols=323 Identities=11% Similarity=-0.012 Sum_probs=256.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
|..+=..+...|++++|...|+.+.+...... ...+..+-..+.+.|+.++|..++ .
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD-----~~tynsLI~~y~k~G~vd~A~~vf------------------~ 496 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKAD-----CKLYTTLISTCAKSGKVDAMFEVF------------------H 496 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCcCHHHHHHHH------------------H
Confidence 33444456677799999999998877653322 367777888888999999999888 7
Q ss_pred HHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hc
Q 004336 466 QMLESDA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQ----MK 539 (760)
Q Consensus 466 ~al~~~p-~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~----l~ 539 (760)
++..... .+...|..+...|.+.|++++|++.|+++.+.. ..+...|..+...+.+.|++++|.+.+++... +.
T Consensus 497 eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 7776553 367888899999999999999999999987653 23467888899999999999999999999875 45
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKI-- 612 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-- 612 (760)
|+...|..+...+... +.+++|.+.+....+. ...|+.+...|.+.|++++|...|++..+.
T Consensus 577 PD~vTynaLI~ay~k~-----------G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 577 PDHITVGALMKACANA-----------GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred CcHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 7767888888888888 8899999999888433 678999999999999999999999998874
Q ss_pred cch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHHH----HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHH
Q 004336 613 RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEK----RSEYCDRELTRADLEMVTQLD-PLRVYPYRYR 685 (760)
Q Consensus 613 ~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~~----~~~~~~~~~A~~~l~kal~l~-p~~~~~~~~L 685 (760)
.|+ ..+..+...|.+.|++++|.+.++.+.+... .+...|.. ....|+.++|...|++..... ..+...|..+
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455 7888889999999999999999999887653 34444443 345689999999999886542 2346779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 686 AAVLMDSHKENEAIAELSRAIA--FKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 686 a~~~~~~g~~~eAi~~l~kal~--~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...|.+.|++++|++.+++... ..|+...+......+.+.|++++|.+.+.++++..
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999998765 45776665544556777799999999999998744
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.5e-15 Score=154.87 Aligned_cols=269 Identities=16% Similarity=0.122 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.|......|..++..++|.+|+..|..|+...|++. ..|...+..++..++++.|....
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a------~yy~nRAa~~m~~~~~~~a~~da------------ 106 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA------SYYSNRAATLMMLGRFEEALGDA------------ 106 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch------hhhchhHHHHHHHHhHhhcccch------------
Confidence 455666677788888889999999999999999999995 77777889999999999999888
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HhC------CCcHHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR------------QHA------ASDHERLVYEGWILY 520 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal------------~~~------p~~~~a~~~Lg~i~~ 520 (760)
++.++++|.....+.+.+.++...++..+|.+.++..- .+. |.-..+...-+.++.
T Consensus 107 ------r~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 107 ------RQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred ------hhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 88888999988888999999998888888887665211 001 222334455567777
Q ss_pred HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~ 600 (760)
..|++++|.+.--..+++++.+ ..+++..|.++...++.+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n----------------------------------------~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATN----------------------------------------AEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hcccchhHHHHHHHHHhcccch----------------------------------------hHHHHhcccccccccchH
Confidence 7778887777777777777777 667777778888888888
Q ss_pred HHHHHHHHHHhhcch--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----cHHHHHHHH----hc
Q 004336 601 LAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----NASAYEKRS----EY 658 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--------------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~----~~~~~~~~~----~~ 658 (760)
.|+..|+++++.+|. ..+-.-|.-.++.|++..|.+.|..+|.++|. ++..|..++ ..
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence 888888888887665 34445566667777777777777777777773 333343332 33
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
|+..+|+...+.++.+||....++...|.++...++|++|.+.|+++++...+
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56666666666666666666666666677777777777777777777766555
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-13 Score=152.12 Aligned_cols=351 Identities=16% Similarity=0.047 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHH-HHHHHHHccCHHHHHHHHhhhcc--ccc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQL-HMLVREHIDNWTIADCWLQLYDR--WSS 454 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~-lg~l~~~~g~~~~A~~~l~l~~~--~~~ 454 (760)
+..-..|++.+..+...|.-..|+...+..+... |.++ ..+.+ -..+....+..++++.|.+..-. ...
T Consensus 354 ~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~ 427 (799)
T KOG4162|consen 354 FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ 427 (799)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh
Confidence 3344556666666667777777777777777776 5554 33333 33344455666666655521000 000
Q ss_pred cC------------------------------CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 455 VD------------------------------DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 455 ~~------------------------------d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.+ ...++..++++++.+|.|+.+.|.++.-|..+++.+.|+...+++++.
T Consensus 428 ~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 428 RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 00 012455667777777777777777777777777777777777777777
Q ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh---
Q 004336 505 -AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--- 579 (760)
Q Consensus 505 -~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--- 579 (760)
..+++.+|..++.++-..+++.+|+...+.++.-.|+| ........+-. ..+..++++......
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~-----------~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL-----------TFNDREEALDTCIHKLAL 576 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh-----------hcccHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777777766665 11111111111 113333333332222
Q ss_pred cc----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------cch-------HHHHHH
Q 004336 580 LR----------KGQALNNLGSVYVDCGQLDLAADCYSNALKI---------------------RHT-------RAHQGL 621 (760)
Q Consensus 580 l~----------~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------------------~~~-------~a~~~L 621 (760)
|+ .......-+......++..+|...++.+..+ +|. ..|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 11 1112222222333344556666666555431 111 466788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
+.++...++.++|.-++.++-.++|..++.|..++. .|++.+|.+.|..|+.++|+++.....+|.++.+.|+..-
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 899999999999999999999999988888877643 3789999999999999999999999999999999998777
Q ss_pred HHH--HHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 698 AIA--ELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 698 Ai~--~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
|.. .+..++..+|.++.+|+. |.+..+.|+.++|.++|..++++++.+|.
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 777 999999999999999965 99999999999999999999999988874
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=1.1e-13 Score=165.20 Aligned_cols=253 Identities=11% Similarity=-0.018 Sum_probs=121.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc--CChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~--p~~~a~~~la~ 550 (760)
+...|..+...|.+.|++++|++.|++..+.. ..+...+..+..++...|++++|.+.+..+++.. |+...+..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 44455555555555555555555555544332 1123344455555555555555555555555432 11144444555
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch-HHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT-RAHQGLARVHF 626 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~-~a~~~La~~~~ 626 (760)
.|... |.+++|.+.|.+..++ ...|+.+...|.+.|+.++|++.|++..+ ..|+ .++..+...+.
T Consensus 369 ~y~k~-----------G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 369 LYSKW-----------GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred HHHHC-----------CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 55554 5555555555554333 44555555555555555555555555544 2233 44444555555
Q ss_pred HcCCHHHHHHHHHHHHHhcc--Cc----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKAR--NN----ASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~--~~----~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
..|+.++|.+.|+...+..+ +. ..+...+...|+.++|.+.+++.. ..| +...|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHH
Confidence 55555555555555544321 11 112222334455555555544321 112 23345555555555555555555
Q ss_pred HHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004336 701 ELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL 739 (760)
.+++.+...|++...+ +...+|...|++++|.+.++...
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555443222 33445555555555555555544
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.3e-15 Score=161.46 Aligned_cols=225 Identities=16% Similarity=0.101 Sum_probs=159.8
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
+..|+.+++.|+..+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..+ ++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha------eAW~~LG~~qaENE~E~~ai~AL------------------~r 344 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA------EAWQKLGITQAENENEQNAISAL------------------RR 344 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH------HHHHHhhhHhhhccchHHHHHHH------------------HH
Confidence 3457777888899999999999999999984 89999999998888888888888 89
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-------EGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~-------Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
+++++|++-.++..||..|...|.-.+|..++.+-+...|........ ...-......+..-.+.|-.+....
T Consensus 345 cl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 345 CLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888988888877655432110000 0000000011122223333333333
Q ss_pred CC--h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 540 RS--F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 540 p~--~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
|. + +.+..||.+|... +.+++|+++|+.+++. ...|+.||-.+....+.++|+..|++|+++
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls-----------~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLS-----------GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred CCCCChhHHhhhHHHHhcc-----------hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 31 1 4444444444444 4444444444444221 788999999999999999999999999998
Q ss_pred cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 613 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.|. +++++||..+..+|.|++|.++|-.+|.+.+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 888 8999999999999999999999998887766
No 64
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.66 E-value=4.1e-16 Score=134.17 Aligned_cols=90 Identities=28% Similarity=0.469 Sum_probs=86.4
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~a 262 (760)
||++.+||++|+|||.+|++.|+||+.||.+++.|+....|.++ ++++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999888899997 79999999999999999997 9999999999999
Q ss_pred hhhChHhHHHHHH
Q 004336 263 NKFCCERLKDACD 275 (760)
Q Consensus 263 ~~~~~~~~~~~c~ 275 (760)
+.|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.4e-14 Score=147.12 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=216.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.....+..+|.+++..|++++|+..|+++..++|.+. .+.-..|.++.+.|+++.-..+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i------~~MD~Ya~LL~~eg~~e~~~~L~-------------- 289 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV------EAMDLYAVLLGQEGGCEQDSALM-------------- 289 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh------hhHHHHHHHHHhccCHhhHHHHH--------------
Confidence 3344566778888888899999999999999999994 88889999999999999988888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
...+..+.....-|+--+..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.++.+.|
T Consensus 290 ----~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 290 ----DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred ----HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 7788888788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhc
Q 004336 541 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLG-SVY-VDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 541 ~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg-~~y-~~~g~~~eA~~~~~~Al~~~ 613 (760)
.. +.|..+-.+|... +.+.+|.-......+. +.++..+| .+. ..-.--++|...++++++++
T Consensus 366 ~rL~~Y~GL~hsYLA~-----------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQ-----------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred hhHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 88 8888888888777 7777777666555222 56666665 333 33344578888888888887
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .+-..+|.++...|.+..++..+++.+...++. ..+..||.++..
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------------------------------~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------------------------------NLHNHLGDIMRA 483 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------------------------------HHHHHHHHHHHH
Confidence 77 677778888888888877777777777666622 345556667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 692 SHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.+.+.+|.++|..|+.++|++....
T Consensus 484 ~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhhHHHHHHHHHHHHhcCccchHHH
Confidence 7777777777777777777665444
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.64 E-value=2.2e-12 Score=156.77 Aligned_cols=318 Identities=12% Similarity=0.005 Sum_probs=262.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 391 ~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
..+...|..++|..+|+.... |+. ..+..+-..+...|+++.|..++ .++...
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--pd~-------~Tyn~LL~a~~k~g~~e~A~~lf------------------~~M~~~ 466 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--PTL-------STFNMLMSVCASSQDIDGALRVL------------------RLVQEA 466 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--CCH-------HHHHHHHHHHHhCcCHHHHHHHH------------------HHHHHc
Confidence 345667899999998877653 443 67777778888999999999999 777765
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--cCChHHHH
Q 004336 471 D-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFF 546 (760)
Q Consensus 471 ~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l--~p~~~a~~ 546 (760)
. ..+...|..+-..|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|+..|++.... .|+...|.
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5 34678888999999999999999999999988653 36789999999999999999999999998764 57668889
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc------H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ch-H
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR------K-GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT-R 616 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~------~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~--~~-~ 616 (760)
.+...+... +.+++|.+.+.+... + ...|+.+...|.+.|++++|.+.|+.+.+.+ |. .
T Consensus 547 sLI~a~~k~-----------G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 547 ALISACGQS-----------GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred HHHHHHHHC-----------CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 999999888 899999999887732 2 6788999999999999999999999998854 33 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHHH----HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEK----RSEYCDRELTRADLEMVTQLD-PLRVYPYRYRAAVLM 690 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~~----~~~~~~~~~A~~~l~kal~l~-p~~~~~~~~La~~~~ 690 (760)
.+..+...|.+.|++++|...|.++.+..- .+...|.. ....|+.++|...++++.+.. +.+...|..+...|.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 889999999999999999999999987632 23333433 345689999999999998865 446788999999999
Q ss_pred HcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH
Q 004336 691 DSHKENEAIAELSRAIA--FKADLHLLHLRAAFHEHTGDVLGALRDCRAALS--VDPNDQ 746 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~--~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~--l~P~~~ 746 (760)
+.|++++|.+.|++... ..|+...+......|.+.|++++|.+.|++... +.|+..
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999998865 467666665667778888999999999998875 456643
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1e-13 Score=144.49 Aligned_cols=259 Identities=13% Similarity=-0.011 Sum_probs=184.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc--cCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI--DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~--g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.++.+|+++.|++.+.-.-+.+.... ..+..+|..++..+ .++..|..+. ..++.
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~-----saaa~nl~~l~flqggk~~~~aqqya------------------d~aln 484 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTA-----SAAANNLCALRFLQGGKDFADAQQYA------------------DIALN 484 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhh-----HHHhhhhHHHHHHhcccchhHHHHHH------------------HHHhc
Confidence 44455577776666654433332221 13333344444332 2344555555 55666
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+..++.+..+.|++-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+..|-+.-.+-.++
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------- 557 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------- 557 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-------
Confidence 6666666666666666666666666666666666666666666666666666666666666665544333333
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
++++..++.+|....+..+|+++|.++...-|+ .++..||.+|-+
T Consensus 558 ---------------------------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 558 ---------------------------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred ---------------------------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 889999999999999999999999999885444 889999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
.|+..+|.+++-......|-+...-+-++ ...-.++|+.+|+++.-+.|+........+.++.+.|+|.+|.+.|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999888888885443332222 22346899999999999999999988999999999999999999999
Q ss_pred HHHHcCCCcH
Q 004336 704 RAIAFKADLH 713 (760)
Q Consensus 704 kal~~~p~~~ 713 (760)
......|.+.
T Consensus 685 ~~hrkfpedl 694 (840)
T KOG2003|consen 685 DIHRKFPEDL 694 (840)
T ss_pred HHHHhCccch
Confidence 9999999876
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=3.5e-14 Score=157.62 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=199.6
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
.+........++..|..+|+|+.|+..++.++.. .|.- ......+|.+|..++++.+|+.+|
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~v------a~~l~~~a~~y~~~~k~~eAv~ly---- 264 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVV------ASMLNILALVYRSLGKYDEAVNLY---- 264 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHH------HHHHHHHHHHHHHhccHHHHHHHH----
Confidence 4556666777999999999999999999999988 2322 144456999999999999999999
Q ss_pred cccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHH
Q 004336 451 RWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVY 514 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~ 514 (760)
++++.. +|.-+.++.+||.+|...|++++|..++++|+++. |.-+..+.+
T Consensus 265 --------------~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 265 --------------EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 555553 36667889999999999999999999999999863 334566888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 594 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~ 594 (760)
++.++..++++++|..++++++++.-+. .+... ..-+..+.++|.+|.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~-----~g~~~---------------------------~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDA-----PGEDN---------------------------VNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhh-----ccccc---------------------------hHHHHHHHHHHHHHH
Confidence 9999999999999999999998763211 00000 001678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcch----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRHT----------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELT 664 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~----------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A 664 (760)
.+|+|++|.+.|++|+.+.+. ..+.++|..|.+.+++.+|...|.+++.+.+
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~------------------ 440 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK------------------ 440 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH------------------
Confidence 999999999999999985321 6788999999999999999988886544321
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
..-.-.|+....|.+||.+|..+|++++|+++..+++.
T Consensus 441 -----~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 -----LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -----HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11223467778899999999999999999999999884
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=4.5e-13 Score=149.44 Aligned_cols=265 Identities=10% Similarity=0.019 Sum_probs=214.4
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
...|.+....|+++.|...+ .++....|+....+...|.++...|++++|..+++++.+..|
T Consensus 88 ~~~glla~~~g~~~~A~~~l------------------~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p 149 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLI------------------AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG 149 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHH------------------HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34567777899999999999 888888898888888999999999999999999999999999
Q ss_pred CcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 507 SDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 507 ~~~-~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
++. .+....+.++...|++++|...+++..+..|++ +.+
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~----------------------------------------~~~ 189 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH----------------------------------------KEV 189 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HHH
Confidence 875 566677999999999999999999999999999 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcc----CcHHHHHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKIR---HTRA---HQGLARVHFLKNNKTTAYEEMTKLIKKAR----NNASAYEKR 655 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a---~~~La~~~~~~g~~~~A~~~l~~al~~~~----~~~~~~~~~ 655 (760)
+..++.++...|++++|.+.+.+..+.. +... ......-+...+..+++.+.+.++.+..| +...++...
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 8999999999999999999999998752 2211 11222222344555556667777777776 355444333
Q ss_pred ----HhcCCHHHHHHHHHHHHhhCCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHH-HHHHHHHHcC
Q 004336 656 ----SEYCDRELTRADLEMVTQLDPLRVYPY--RYRAAVLMDSHKENEAIAELSRAIAFKADLH--LLH-LRAAFHEHTG 726 (760)
Q Consensus 656 ----~~~~~~~~A~~~l~kal~l~p~~~~~~--~~La~~~~~~g~~~eAi~~l~kal~~~p~~~--~~~-l~a~~~~~~g 726 (760)
...|+.++|...++++++..|++.... ..........++.+++++.++++++..|+++ .+. ..|+++.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 456999999999999999999987532 3334444556889999999999999999999 666 3499999999
Q ss_pred CHHHHHHHHH--HHHhcCCCcHHHH
Q 004336 727 DVLGALRDCR--AALSVDPNDQEML 749 (760)
Q Consensus 727 ~~~~A~~~~~--~aL~l~P~~~~~l 749 (760)
++++|.++|+ ++++.+|++....
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 9999999999 6888999887644
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=4.7e-13 Score=146.56 Aligned_cols=300 Identities=12% Similarity=-0.017 Sum_probs=200.0
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+-+.++..+|..+...|+.++|...+.++....|.+.. ..+..+..+.++...|++++|...+
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~-------------- 66 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---ERERAHVEALSAWIAGDLPKALALL-------------- 66 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 34556667777777777888888888888888776631 1255667788888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
++++..+|++..++.. +..+...|++ ..+.+.+.......|.....+..+|.++...|++++|+..+++++
T Consensus 67 ----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 141 (355)
T cd05804 67 ----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL 141 (355)
T ss_pred ----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888877664 5555444443 344444433334566667777788888888888888888888888
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-- 614 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-- 614 (760)
+++|++ ..++..+|.++...|++++|+.++++++...+
T Consensus 142 ~~~p~~----------------------------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 142 ELNPDD----------------------------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred hhCCCC----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 888888 56777778888888888888888888877543
Q ss_pred h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---------HHHHHHHhcCCHHHHHHH--H-HHHHhhCCC-
Q 004336 615 T----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---------SAYEKRSEYCDRELTRAD--L-EMVTQLDPL- 677 (760)
Q Consensus 615 ~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---------~~~~~~~~~~~~~~A~~~--l-~kal~l~p~- 677 (760)
+ ..+..+|.++...|++++|+..|++++...|... .........|....+... + .......|.
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 1 2455678888888888888888888765544111 111111112211111111 1 111111121
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cH------HHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 678 -RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LH------LLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 678 -~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~---~~------~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
........+.++...|+.++|...++......-. .. .+. +.+..+...|++++|++.+..++.+.
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2233346788889999999999999887654322 11 111 55888899999999999999998754
No 71
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=1.7e-13 Score=145.99 Aligned_cols=237 Identities=13% Similarity=0.065 Sum_probs=135.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
...+++++|+..+.+++.++|++. .+++..+.++...| .+++++.++ .+++..+|
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~y------taW~~R~~iL~~L~~~l~eeL~~~------------------~~~i~~np 103 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNY------TVWHFRRLCLEALDADLEEELDFA------------------EDVAEDNP 103 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHHcchhHHHHHHHH------------------HHHHHHCC
Confidence 334455566666666666665553 55555555555554 345555555 55555555
Q ss_pred CcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCP--EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~--~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
++..+|+..+.++...|+. ++++.+++++++.+|++..+|...|+++...|++++|++.+.++|+.+|.+
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-------- 175 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-------- 175 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------
Confidence 5555555555555555542 445555555555555555555555555555555555555555555555555
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
..+|+..|.+ ....|+
T Consensus 176 --------------------------------~sAW~~R~~v--------------------------------l~~~~~ 191 (320)
T PLN02789 176 --------------------------------NSAWNQRYFV--------------------------------ITRSPL 191 (320)
T ss_pred --------------------------------hhHHHHHHHH--------------------------------HHhccc
Confidence 4444444444 333211
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAI 706 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal 706 (760)
... ++ ...++++....+++..+|++..+|.+++.++.. .++..+|++.+.+++
T Consensus 192 l~~----~~-------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 192 LGG----LE-------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ccc----cc-------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 000 00 012455666778888888888999988888887 455677888888888
Q ss_pred HcCCCcHHHH-HHHHHHHHcC------------------CHHHHHHHHHHHHhcCCCcHHHH
Q 004336 707 AFKADLHLLH-LRAAFHEHTG------------------DVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 707 ~~~p~~~~~~-l~a~~~~~~g------------------~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
...|....+. +.+.+|.... ..++|.+.|+..-+.||--..-+
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 8887776444 5555555421 23567777776655555433333
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1e-12 Score=132.88 Aligned_cols=269 Identities=16% Similarity=0.062 Sum_probs=206.6
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
|-.|.-++...+.++|+..|-.+++.+|.. .++...||.++...|..+.|+.+. +
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t------~e~~ltLGnLfRsRGEvDRAIRiH-------------------Q 93 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPET------FEAHLTLGNLFRSRGEVDRAIRIH-------------------Q 93 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchh------hHHHHHHHHHHHhcchHHHHHHHH-------------------H
Confidence 455777888889999999999999999998 499999999999999999999876 4
Q ss_pred HHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 467 MLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 467 al~~~p~~-----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+-..|+. ..+.+.+|.-|+..|-++.|...|....+...--..++..|-.+|....+|++|+...++..++.+.
T Consensus 94 ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 94 TLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 44444543 4578889999999999999999999988766666789999999999999999999999999998877
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
. ..+ .-++.|..++..+....+.+.|...+.+|++.+|. ++-.
T Consensus 174 ~------------------------~~~-----------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 174 T------------------------YRV-----------EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred c------------------------chh-----------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 6 000 01677888899999999999999999999998887 8888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcH-H----HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNA-S----AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~----~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
.+|+++...|++..|++.++.+++.+|..- . ++......|+.++....+.++.+..+... +...++..-....-
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G 297 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEG 297 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhC
Confidence 999999999999999999999998888432 1 12222333666666666666666555432 23333444444444
Q ss_pred HHHHHHHHHHHHHcCCCcHHHH
Q 004336 695 ENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.++|..++.+-+..+|+....+
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 298 IDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred hHHHHHHHHHHHhhCCcHHHHH
Confidence 5666666666666666655444
No 73
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=1e-12 Score=156.80 Aligned_cols=322 Identities=13% Similarity=0.028 Sum_probs=157.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
|..+...+...|++++|+..|++.+...+... ...+..+-..+...|..+.+..+. .
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~-----~~t~~~ll~a~~~~~~~~~~~~l~------------------~ 248 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAE-----PRTFVVMLRASAGLGSARAGQQLH------------------C 248 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC-----hhhHHHHHHHHhcCCcHHHHHHHH------------------H
Confidence 33334444444566666666665554432211 133333444444555555555554 3
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hcCCh
Q 004336 466 QMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF 542 (760)
Q Consensus 466 ~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~--l~p~~ 542 (760)
.++... ..+..++..+...|.+.|++++|.+.|++. .+.+..+|..+...|...|++++|+..|++..+ ..|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 333222 223444555555556666666666555543 233445555555666666666666666655543 23444
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRA 617 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a 617 (760)
..+..+..++... +.+++|.+.+....+. ..+++.+...|.+.|++++|...|++..+. ...+
T Consensus 326 ~t~~~ll~a~~~~-----------g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t 393 (697)
T PLN03081 326 FTFSIMIRIFSRL-----------ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLIS 393 (697)
T ss_pred HHHHHHHHHHHhc-----------cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-Ceee
Confidence 4555555555555 5555555555544222 345555555566666666666666554331 1145
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHH----HHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYE----KRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~----~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~ 690 (760)
|..+...|.+.|+.++|++.|++..+... ++...|. .....|..++|...|+...+..+. +...|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 55555556666666666666665554321 1222222 223345555666655555443221 2234555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+.|++++|.+.+++. ...|+...+......+...|+.+.|...+++.++++|++.
T Consensus 474 r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 666666665555443 2333333222222223333556666666666555555543
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.5e-13 Score=136.27 Aligned_cols=242 Identities=18% Similarity=0.164 Sum_probs=170.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccC
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ 557 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~ 557 (760)
|-.|.-++-.++.++|+..|...++.+|...+++..||+++...|..+.|+...+..+. .|+. ..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~------------- 104 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE------------- 104 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH-------------
Confidence 45677788889999999999999999999999999999999999999999998887664 3554 00
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
++.-+...||.-|+..|-++.|...|......... .++..|..+|....++++|+
T Consensus 105 -----------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 105 -----------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred -----------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 11345566666677777777777777666653222 56666667777777777777
Q ss_pred HHHHHHHHhcc-----CcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 636 EEMTKLIKKAR-----NNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 636 ~~l~~al~~~~-----~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
+.-+++.+..+ ..+..|..++. ..+.+.|+..+.+|++.+|+...+-..+|.+....|+|.+|++.++.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 77776666665 23334444332 2456677777777777777777777777777777777777777777777
Q ss_pred HcCCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 707 AFKADLHLL--HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 707 ~~~p~~~~~--~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+.+|+.... .....+|.+.|+.++....+.++.+..++....+-++..+..
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 777765422 234666777777777777777777777766655555554443
No 75
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.61 E-value=3.6e-15 Score=157.27 Aligned_cols=149 Identities=23% Similarity=0.371 Sum_probs=134.0
Q ss_pred CCCccceeEEEEecC-----eEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCC
Q 004336 176 SGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGV 250 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~-----~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~ 250 (760)
.+++.++||.|+||+ +.|||||.+||..|+-|.+||+|++.|+...+|.++ +|.|.++..++.|+|+..+. +
T Consensus 109 ~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsdev~-~ 185 (521)
T KOG2075|consen 109 FNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDEVK-L 185 (521)
T ss_pred ccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcchhh-h
Confidence 467778999999984 589999999999999999999999999988899998 89999999999999999997 9
Q ss_pred ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhh
Q 004336 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEI 327 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~l 327 (760)
..+||..+|.+|+++-++.|.+.|..||...+.....++.+.+.+...+.+.|...|++.+.-.+-..++.+.+..+
T Consensus 186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~di 262 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDI 262 (521)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeeh
Confidence 99999999999999999999999999999999777777777777999999999999999987777666666655433
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=1.7e-13 Score=152.27 Aligned_cols=246 Identities=16% Similarity=0.065 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
..+...++..|...|+++.|+.++ .++++. .|.-......+|.+|..++++.+|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~------------------k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eA 260 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLC------------------KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEA 260 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH------------------HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHH
Confidence 367777999999999999999999 777776 455566666799999999999999
Q ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 495 MRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 495 i~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
+..|++|+.+ +|..+.++.+||.+|...|++++|..++++++++.... ++.....
T Consensus 261 v~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-----~~~~~~~------------ 323 (508)
T KOG1840|consen 261 VNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-----LGASHPE------------ 323 (508)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-----hccChHH------------
Confidence 9999999976 45556789999999999999999999999999763221 0000000
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cc-h--HHHHHHHHHHHHcCCHHHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RH-T--RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~-~--~a~~~La~~~~~~g~~~~A~~ 636 (760)
-+..+.+++.++...+++++|..+|++++++ ++ . ....+||.+|..+|++++|.+
T Consensus 324 ---------------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 324 ---------------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred ---------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 0678889999999999999999999999984 22 1 678899999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc
Q 004336 637 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF----KADL 712 (760)
Q Consensus 637 ~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~----~p~~ 712 (760)
++++++.+..... -..++....++..+|..|.+.+++.+|...|..+..+ .|+.
T Consensus 389 ~~k~ai~~~~~~~----------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 389 LYKKAIQILRELL----------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHhcc----------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 9999887764111 0112333456788899999999999999999988754 4555
Q ss_pred HHH---HHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 713 HLL---HLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 713 ~~~---~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
+.. +.+ +.+|..+|+++.|+++.++++.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 433 233 9999999999999999999883
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=3.6e-12 Score=139.41 Aligned_cols=324 Identities=19% Similarity=0.123 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+|...+...+++|+..|+++ +.+.+.|..+...|+-++|..+. ..++..++.....
T Consensus 22 QYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~v------------------r~glr~d~~S~vC 77 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELV------------------RLGLRNDLKSHVC 77 (700)
T ss_pred HHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHH------------------HHHhccCcccchh
Confidence 77777777777777777775 77777777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHccc
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS 556 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~ 556 (760)
|..+|.++...++|++|+++|+.|+.+.|+|...+.-++.+..++|+++-....-.+.++..|.. ..|+..+......+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777 55555554443331
Q ss_pred CCC----------------Cc---------------chhhhhHHHHHHhhhHhh----ccHHHHHHHHHHHHHHcCCHHH
Q 004336 557 QDS----------------SC---------------SSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDL 601 (760)
Q Consensus 557 ~~~----------------~~---------------~~~~~~~leeAl~~~~~~----l~~~~a~~~Lg~~y~~~g~~~e 601 (760)
... .+ .-...+.+++|++..... .++.......|.++.+.+++++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 000 00 000111222222222222 1112333445677777788888
Q ss_pred HHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccC----------------cHHHHHH--------
Q 004336 602 AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY-EEMTKLIKKARN----------------NASAYEK-------- 654 (760)
Q Consensus 602 A~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~-~~l~~al~~~~~----------------~~~~~~~-------- 654 (760)
|...|...+..+|+ ..+.++-.++..-.+.-++. ..|...-+..|. ....+..
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88888777777776 33334444443222223333 444443333330 0000000
Q ss_pred ---------HHhcCCHHHHHHHHHHHH-h----hC--------------CCCh--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 655 ---------RSEYCDRELTRADLEMVT-Q----LD--------------PLRV--YPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 655 ---------~~~~~~~~~A~~~l~kal-~----l~--------------p~~~--~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
.+.+.+..+. ..+++.+ . ++ |-.+ ..++.++..+...|+++.|..+++.
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0111221211 1222221 1 11 2222 3456788999999999999999999
Q ss_pred HHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 705 AIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 705 al~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
|+...|.....+ +.|.++.++|++++|...++.+.++|-.|-
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 999999988877 559999999999999999999999885543
No 78
>PLN03077 Protein ECB2; Provisional
Probab=99.59 E-value=1.7e-12 Score=158.56 Aligned_cols=272 Identities=15% Similarity=0.073 Sum_probs=196.0
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-cCCh
Q 004336 465 YQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSF 542 (760)
Q Consensus 465 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l-~p~~ 542 (760)
..+.... ..+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.... .|+.
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 5555443 33566777888899999999999999987643 35567888889999999999999999998754 4555
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRA 617 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a 617 (760)
..+..+-.++... +.++.+.+.+....+. ...++.+-..|.+.|++++|...|+.. .....+
T Consensus 490 ~t~~~lL~a~~~~-----------g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s 556 (857)
T PLN03077 490 VTLIAALSACARI-----------GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVS 556 (857)
T ss_pred hHHHHHHHHHhhh-----------chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhh
Confidence 6666666666665 7777777766655332 456667788888899999998888876 222378
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc--cCcH---HHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKA--RNNA---SAYEKRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~--~~~~---~~~~~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~ 690 (760)
|..+...|...|+.++|++.|++..+.. |+.. .+.......|..++|...|+...+..+. +...|..+..++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 8888888889999999999998887643 3322 2233344568888888888888744322 3467888888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
+.|++++|.+.+++. ...|+...+. +...+ ...|+.+.|....+++++++|++.....++..
T Consensus 637 r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n 699 (857)
T PLN03077 637 RAGKLTEAYNFINKM-PITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCN 699 (857)
T ss_pred hCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Confidence 999999998888875 4567655444 33333 44488888888888888888888766555443
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-12 Score=142.43 Aligned_cols=310 Identities=14% Similarity=0.052 Sum_probs=238.5
Q ss_pred HHHHHHHHhhhHHHhc-----------CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 381 QRLLAFHQLGCVRLLR-----------KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~-----------g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
-.+..++.+|..|-.+ ....++++.++++++.+|+++ .+.+.++.-|..+++.+.|..+.
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~--- 501 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA--- 501 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH---
Confidence 3455666666655322 245789999999999999997 99999999999999999999999
Q ss_pred ccccccCCcCcHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLES-DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
+++++. ..+++.+|..++.++-..+++.+|+.....++.-.|+|.........+-...|+.++|
T Consensus 502 ---------------~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 502 ---------------REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred ---------------HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 999999 4577899999999999999999999999999999999887777777777789999999
Q ss_pred HHHHHHHHhhcCCh-HHHHHHHHH--HHc---ccCCCCcchhhhhHHHHHHhhhHhh---------cc-------H----
Q 004336 529 LRKAEESIQMKRSF-EAFFLKAYA--LAD---SSQDSSCSSTVVSLLEDALKCPSDR---------LR-------K---- 582 (760)
Q Consensus 529 l~~~~~al~l~p~~-~a~~~la~~--l~~---~~~~~~~~~~~~~~leeAl~~~~~~---------l~-------~---- 582 (760)
+......+.+-... .+...++.. ... .....++....+.....+....... +. +
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 99998888764322 222222111 100 0011111111111111111111100 00 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH-
Q 004336 583 ---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS- 656 (760)
Q Consensus 583 ---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~- 656 (760)
...|...+..+...++.++|.-++.++-++.|. ..++..|.++..+|+..+|...|..++..+|+.......++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 457778899999999999999999999998887 88999999999999999999999999999997655544433
Q ss_pred ---hcCCHHHHHH--HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 657 ---EYCDRELTRA--DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 657 ---~~~~~~~A~~--~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
..|+..-|.. .+..++++||.++.+|+++|.++..+|+.++|.+.|..++++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 3466555555 999999999999999999999999999999999999999999887763
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.59 E-value=2.1e-13 Score=154.36 Aligned_cols=363 Identities=14% Similarity=0.075 Sum_probs=242.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 369 le~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
+..++....-....|.++..+|.+|..--+...|..+|++|..+||.+. .+.-..+..|....+|+.|....-.
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda------eaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA------EAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh------hhHHHHHHHhhccccHHHHHHHHHH
Confidence 4455556666777899999999999998899999999999999999995 8888889999999999988765411
Q ss_pred hc----------cc--------cccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 004336 449 YD----------RW--------SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510 (760)
Q Consensus 449 ~~----------~~--------~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~ 510 (760)
.. .| .+....+++..++.+++.+|.+...|..+|.+|.+.|++..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 00 00 1111223555677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCC---CcchhhhhHHHHHHhhhHhhccH----
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS---SCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~---~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
+.+..+.+....|+|.+|+..+...+...... .....++.++.....+. +-.......++++++.+.-.+..
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777777777777777665555 55556665555431111 11112233334444333222111
Q ss_pred -HHHHHHHHHH-------------------HHH----cCCH------HHHHHHHHHHHhh-cchHHHHHHHHHHHH----
Q 004336 583 -GQALNNLGSV-------------------YVD----CGQL------DLAADCYSNALKI-RHTRAHQGLARVHFL---- 627 (760)
Q Consensus 583 -~~a~~~Lg~~-------------------y~~----~g~~------~eA~~~~~~Al~~-~~~~a~~~La~~~~~---- 627 (760)
...|..+|.. +.. .+.. --|.+++-..++. .+...|+++|..|++
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1111111111 111 1111 1244444444442 233677888877776
Q ss_pred ----cCCHHHHHHHHHHHHHhccCcHHHHHHHH---hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 628 ----KNNKTTAYEEMTKLIKKARNNASAYEKRS---EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 628 ----~g~~~~A~~~l~~al~~~~~~~~~~~~~~---~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
+.+...|+..+.++++...++...++.++ .-|.+.-|...|-+.+...|.....|.++|.++.+..+++.|..
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 22334688888888888887777776664 33567777788888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 004336 701 ELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~ 737 (760)
.+.++..+.|.+-..|++ +.+....|+.-++...+.-
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888888888888877777 7777777877777777766
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.9e-12 Score=143.85 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=196.6
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...+.....+|+++.|..+|+++.+.+|++. .......+.++...|++++|...+ +
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-----~~~~l~~a~l~l~~g~~~~Al~~l------------------~ 177 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQ-----LPVEITRVRIQLARNENHAARHGV------------------D 177 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 34445566888999999999999999999984 233334589999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHH-------HHCCCHHHHHHHHHHHHh
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWIL-------YDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~-Lg~i~-------~~~g~~eeAl~~~~~al~ 537 (760)
+..+.+|+++.++..++.+|.+.|++++|++.+.+..+..+.++..... .+..+ ....+.+...+.+++..+
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999887665443221 11111 111111222222222111
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-H
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-R 616 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~ 616 (760)
..|++ +.+...++..+...|+.++|...++++++..+. .
T Consensus 258 ~~~~~----------------------------------------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~ 297 (398)
T PRK10747 258 KTRHQ----------------------------------------VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER 297 (398)
T ss_pred HHhCC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 12222 778888999999999999999999999985443 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
.....+. ...++.+++++.+++.++..|+++..+...+ ..+++++|...|+++++.+|++.. +..++.++.+.
T Consensus 298 l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~ 374 (398)
T PRK10747 298 LVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRL 374 (398)
T ss_pred HHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc
Confidence 2222333 3459999999999999999998887665543 458899999999999999998644 66899999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004336 693 HKENEAIAELSRAIAFK 709 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~ 709 (760)
|+.++|..+|++++.+.
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998754
No 82
>PLN02789 farnesyltranstransferase
Probab=99.58 E-value=8e-13 Score=140.86 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=122.9
Q ss_pred cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcC-CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH
Q 004336 356 MNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE 434 (760)
Q Consensus 356 ~~~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g-~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~ 434 (760)
+.....++.++.+.+..++. .+....+|+..|.++...| ++++|+..++++++.+|++. .+|+..+.+..
T Consensus 47 l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~ 117 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAE 117 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHH
Confidence 44555677777777766555 5667899999999999998 68999999999999999995 89999999998
Q ss_pred HccCH--HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 435 HIDNW--TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 435 ~~g~~--~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
..|+. ++++.++ .++++.+|.+..+|..++.++...|++++|++++.++++.+|.+..+|
T Consensus 118 ~l~~~~~~~el~~~------------------~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 118 KLGPDAANKELEFT------------------RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HcCchhhHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 88874 5667777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHC
Q 004336 513 VYEGWILYDT 522 (760)
Q Consensus 513 ~~Lg~i~~~~ 522 (760)
...|.++...
T Consensus 180 ~~R~~vl~~~ 189 (320)
T PLN02789 180 NQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhc
Confidence 9999886654
No 83
>PLN03077 Protein ECB2; Provisional
Probab=99.56 E-value=4.8e-12 Score=154.71 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=59.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhh--CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l--~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
|..+-..|.+.|++++|+..|++.... .|+. ..+..+-..+...|+.+.|.+++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-------~ty~~ll~a~~~~g~~~~a~~l~----------------- 311 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDL-------MTITSVISACELLGDERLGREMH----------------- 311 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHH-----------------
Confidence 333334455555666666666666543 3433 33444444445555555555555
Q ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 464 IYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 464 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
..+.... +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..
T Consensus 312 -~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 312 -GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred -HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333221 2234445555555555555555555555432 1233445555555555555555555555443
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=7e-13 Score=133.78 Aligned_cols=270 Identities=15% Similarity=0.060 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc---ch-hchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYR---MF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~---~~-~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
+++..+|...|-......++.+-.-+ .. .....-...+|.+|.+.|.+.+|...+ +..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekql------------------qss 249 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQL------------------QSS 249 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHH------------------HHH
Confidence 34555577777776666665542111 00 000112245889999999999998888 777
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
+...| .++.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|+++|+.+++.+|.+
T Consensus 250 L~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n----- 323 (478)
T KOG1129|consen 250 LTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN----- 323 (478)
T ss_pred hhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-----
Confidence 77654 567888899999999999999999999999999998888999999999999999999999999998888
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVH 625 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~ 625 (760)
.++.--+|.-|+..++++-|+.+|++.+.. ..++.+.++|.+.
T Consensus 324 -----------------------------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 324 -----------------------------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred -----------------------------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 455555677788889999999999999985 4458889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
...++++-++..+++++....+. ..-...|+++|.+....|++.-|...|+-+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~---------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQP---------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCc---------------------------chhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99888877777777666544311 123478999999999999999999999999
Q ss_pred HHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 706 IAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 706 l~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
+..+|++...... +.+-.+.|+.++|..++..+-...|+-.+
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 9999999877744 77778889999999999999999997654
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=2.2e-12 Score=132.81 Aligned_cols=179 Identities=11% Similarity=-0.014 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++.+|..+...|+++.|+..+ ++++..+|+++ .+++.+|.++...|++++|+..|+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYF------------------EALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD 94 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 588999999999999999999999 99999999875 688999999999999999999999
Q ss_pred HHHHhCCCcHH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHhhcCCh-HHHHHH---HHHHHcccCCCCcchh
Q 004336 500 LARQHAASDHE---RLVYEGWILYDT--------SHCEEGLRKAEESIQMKRSF-EAFFLK---AYALADSSQDSSCSST 564 (760)
Q Consensus 500 kal~~~p~~~~---a~~~Lg~i~~~~--------g~~eeAl~~~~~al~l~p~~-~a~~~l---a~~l~~~~~~~~~~~~ 564 (760)
++++..|+++. +++.+|.++... |++++|+..+++++..+|++ .++..+ +......
T Consensus 95 ~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~--------- 165 (235)
T TIGR03302 95 RFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL--------- 165 (235)
T ss_pred HHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH---------
Confidence 99999998775 789999999886 89999999999999999998 332222 2211111
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
......+|..|...|++.+|+..|+++++..|. .+++.+|.++...|++++|..+++
T Consensus 166 ------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 166 ------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred ------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344567899999999999999999999986442 799999999999999999999988
Q ss_pred HHHHhcc
Q 004336 640 KLIKKAR 646 (760)
Q Consensus 640 ~al~~~~ 646 (760)
.+....|
T Consensus 228 ~l~~~~~ 234 (235)
T TIGR03302 228 VLGANYP 234 (235)
T ss_pred HHHhhCC
Confidence 8776654
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=7e-11 Score=129.48 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=233.6
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..+...|..+...|+-++|....+.++..++... -+|+.+|+++....+|++|+.++
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv~gl~~R~dK~Y~eaiKcy------------ 98 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHVLGLLQRSDKKYDEAIKCY------------ 98 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHHHHHHHhhhhhHHHHHHHH------------
Confidence 344556666777777788899999999999999999986 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+.++..+|+|..++..++.+..+.++++-....-.+.++..|.....|...+..+.-.|++..|....+...+.
T Consensus 99 ------~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 99 ------RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred ------HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887765
Q ss_pred c---CCh------HHHHHHHHHHHcccCC-----------------------CCcchhhhhHHHHHHhhhHhhccH----
Q 004336 539 K---RSF------EAFFLKAYALADSSQD-----------------------SSCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 539 ~---p~~------~a~~~la~~l~~~~~~-----------------------~~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
. |+. +.......++...+.. ........+++++|...|...+.+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 4 443 1222222222222110 011122457788888888877544
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhcch---------H-------------------------HHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAA-DCYSNALKIRHT---------R-------------------------AHQGLARVHFL 627 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~-~~~~~Al~~~~~---------~-------------------------a~~~La~~~~~ 627 (760)
...+..+-.++..-.+--+++ ..|...-+.-|. . +...+-.+|
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy-- 330 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY-- 330 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH--
Confidence 333333333333222333344 444443321110 0 000011111
Q ss_pred cCCHHHHHHHHHHHHHh-------c------------cCc--HHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHH
Q 004336 628 KNNKTTAYEEMTKLIKK-------A------------RNN--ASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPY 682 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~-------~------------~~~--~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~ 682 (760)
.++. -...+++.+.. . |+. .|.+..++ ..|+++.|...++.|+...|+..+.|
T Consensus 331 -k~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 331 -KDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred -hchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 1111 11133332221 1 112 23222222 34899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
..-|.++...|.+++|...+..+.+++-.+..+.-. +.+..+..+.++|.+...+.-.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999999999999999999999987666555533 7777777889999887766543
No 87
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=6.7e-10 Score=116.12 Aligned_cols=304 Identities=15% Similarity=0.025 Sum_probs=218.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
..+|.....-|..-+..|+|..|+....+.-+..+.- .-++..-+....+.|+++.|..|+
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p------~l~~l~aA~AA~qrgd~~~an~yL------------- 141 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP------VLAYLLAAEAAQQRGDEDRANRYL------------- 141 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch------HHHHHHHHHHHHhcccHHHHHHHH-------------
Confidence 3456677777888888999999999999865554444 366777778889999999999999
Q ss_pred cHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 460 SLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 460 sl~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++-+..++ .-......+.++...|+++.|.....++++..|.++.++.....+|...|++.+......+.-+.
T Consensus 142 -----~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 142 -----AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred -----HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 787777443 45567788999999999999999999999999999999999999999999999999988887664
Q ss_pred cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch
Q 004336 539 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT 615 (760)
Q Consensus 539 ~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~ 615 (760)
.--. +-+..+- ..++..+-.-....+.-+.=..++++.-. .+++
T Consensus 217 ~~l~~~e~~~le---------------------------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 217 GLLSDEEAARLE---------------------------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred cCCChHHHHHHH---------------------------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 3222 0000000 11111111111111111111112222111 1122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
.....++.-+...|+.++|.+...++++..-+.. ..+......++...=++..++.+...|+++..+..||..+++.+.
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 4444455555566666666666666555543221 111122234666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 695 ENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
|.+|..+++.+++..|+.......+..+.+.|+..+|.+.++.++.
T Consensus 344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999985
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.46 E-value=2.8e-11 Score=132.48 Aligned_cols=266 Identities=13% Similarity=-0.034 Sum_probs=182.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc----CHHHHHHHHhhhccccccCC
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID----NWTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g----~~~~A~~~l~l~~~~~~~~d 457 (760)
.....+..+..+...|++++|...+++++..+|++. .++.. +..+...| ....+...+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a~~~-~~~~~~~~~~~~~~~~~~~~l----------- 103 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL------LALKL-HLGAFGLGDFSGMRDHVARVL----------- 103 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHHHH-hHHHHHhcccccCchhHHHHH-----------
Confidence 344456678888888999999999999999999995 44443 44444333 333333333
Q ss_pred cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 458 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
......+|.....+..+|.++...|++++|+..++++++.+|++..++..+|.+++..|++++|+..+++++.
T Consensus 104 -------~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 104 -------PLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred -------hccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 3333566778888889999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-- 614 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-- 614 (760)
..|.. .. ....+..+|.++...|++++|+..|++++...+
T Consensus 177 ~~~~~~~~-------------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~ 219 (355)
T cd05804 177 TWDCSSML-------------------------------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES 219 (355)
T ss_pred ccCCCcch-------------------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC
Confidence 87643 00 023566788888888999999998888876544
Q ss_pred h-HHHH----HHHHHHHHcCCHHHHHHH--HHHH-HHhccC----cH--HHHHHHHhcCCHHHHHHHHHHHHhhCCC---
Q 004336 615 T-RAHQ----GLARVHFLKNNKTTAYEE--MTKL-IKKARN----NA--SAYEKRSEYCDRELTRADLEMVTQLDPL--- 677 (760)
Q Consensus 615 ~-~a~~----~La~~~~~~g~~~~A~~~--l~~a-l~~~~~----~~--~~~~~~~~~~~~~~A~~~l~kal~l~p~--- 677 (760)
. .... .+...+...|....+..+ +... ....+. .. .........|+.++|...++......-.
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 220 DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 1 1111 223333344433333332 1111 111111 01 1111122346778887777766443211
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 678 ------RVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 678 ------~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
........|.++...|++++|++.+..++...
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24455678899999999999999999998754
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=6.7e-12 Score=129.17 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=129.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
.++..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|++ .+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 4466788999999999999999999999999999999875 688999999999999999999999999999987 11
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcchH-
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC--------GQLDLAADCYSNALKIRHTR- 616 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~--------g~~~eA~~~~~~Al~~~~~~- 616 (760)
..+++.+|.++... |++++|+..|+++++..|..
T Consensus 107 -------------------------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 107 -------------------------------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred -------------------------------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 22444555555443 66777777777777765542
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 617 -AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 617 -a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
++..+..+....+ . + ......+|..+...|++
T Consensus 150 ~~~~a~~~~~~~~~----------------------------------~---~----------~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 150 YAPDAKKRMDYLRN----------------------------------R---L----------AGKELYVARFYLKRGAY 182 (235)
T ss_pred hHHHHHHHHHHHHH----------------------------------H---H----------HHHHHHHHHHHHHcCCh
Confidence 1111111100000 0 0 01123456667777777
Q ss_pred HHHHHHHHHHHHcCCCcH---HHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 696 NEAIAELSRAIAFKADLH---LLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~---~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.+|+..+++++...|+.+ ..+ ..+.++..+|++++|..+++......|
T Consensus 183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 183 VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777766543 233 446777777777777776666555444
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.45 E-value=3.4e-11 Score=136.79 Aligned_cols=320 Identities=14% Similarity=0.035 Sum_probs=240.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
..+++...|...|-++++++|... .++..+|.+|....+...|...| +++.++|+.
T Consensus 469 ~~rK~~~~al~ali~alrld~~~a------paf~~LG~iYrd~~Dm~RA~kCf------------------~KAFeLDat 524 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLA------PAFAFLGQIYRDSDDMKRAKKCF------------------DKAFELDAT 524 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchh------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHhcCCch
Confidence 456679999999999999999996 99999999999888888888877 444444433
Q ss_pred cH------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 474 KG------------------------------------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 474 ~~------------------------------------~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
++ ..|..+|..|.+.+++.+|+..|+.++..+|.+.+.|..+|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 32 345557778888899999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----------HHH
Q 004336 518 ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQA 585 (760)
Q Consensus 518 i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----------~~a 585 (760)
+|...|++..|++.|.++..++|.. .+.|..+...... |.+++|+..++..+.. +..
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----------GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----------GKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999 7888888888887 8888888887766322 566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----cch-----HHHHHHHHHHHH-----------------------cCCH-
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKI-----RHT-----RAHQGLARVHFL-----------------------KNNK- 631 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~-----~~~-----~a~~~La~~~~~-----------------------~g~~- 631 (760)
+..++..+.-.|=+.+|.+.++++++. .+. -.|..++.+..- .+..
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~ 753 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALK 753 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCc
Confidence 666677777777778888888877762 111 122222221111 0100
Q ss_pred -----HHHHHHHHHHHHhcc------CcHHHHHHH-H---hcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 632 -----TTAYEEMTKLIKKAR------NNASAYEKR-S---EYC-DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 632 -----~~A~~~l~~al~~~~------~~~~~~~~~-~---~~~-~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
--|.+.+...++... +.+.-|... . .-+ +...|+..+.++++++.++...|+.||.+ ...|++
T Consensus 754 ~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnv 832 (1238)
T KOG1127|consen 754 KNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNV 832 (1238)
T ss_pred chhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchh
Confidence 012222222222111 222222211 1 112 23479999999999999999999999977 667999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
.-|...|-+.+...|.....|++ +.++....|++.|...+.++..++|.|-..+
T Consensus 833 a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 99999999999999999988866 8888888999999999999999999987655
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.4e-12 Score=131.42 Aligned_cols=258 Identities=14% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..|...+-.++..|+|++|....++.+.++|... .+....+.++...+...+|...++-+... ....++.
T Consensus 83 a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~------k~~~r~~~c~~a~~~~i~A~~~~~~~~~~---~~anal~ 153 (486)
T KOG0550|consen 83 ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS------KGQLREGQCHLALSDLIEAEEKLKSKQAY---KAANALP 153 (486)
T ss_pred hhhhchhHHHHHHHHhHhhcccchhhheecCCCcc------ccccchhhhhhhhHHHHHHHHHhhhhhhh---HHhhhhh
Confidence 44444444444445599999999999999999997 55556778888888888888777322211 0011111
Q ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 463 VIYQMLESD---APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 463 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+++.+..+ |.-..+-+..+.++.-.|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++
T Consensus 154 ~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 154 TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 222222222 33345566678899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---- 615 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---- 615 (760)
|+. .....+-.. .+....+..-|.-.++.|+|.+|.++|..++.++|.
T Consensus 234 pdh------------------------~~sk~~~~~----~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 234 PDH------------------------QKSKSASMM----PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hhh------------------------hhHHhHhhh----HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 998 111111100 122467778899999999999999999999998876
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~ 677 (760)
..+.+++.+..+.|+..+|+...+.++++++....++..++. ++++++|+++|+++.+...+
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 678899999999999999999999999999988877776653 47899999999999998765
No 92
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=2.7e-12 Score=132.99 Aligned_cols=291 Identities=17% Similarity=0.091 Sum_probs=193.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.-|.-+++.|++...+..|+.+++.-.++. ..-...|..||.+|...++|++|+.+.. ++ -.+.+.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl--~tLSAIYsQLGNAyfyL~DY~kAl~yH~-hD-----------ltlar~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDL--STLSAIYSQLGNAYFYLKDYEKALKYHT-HD-----------LTLARL 87 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHH--HHHHHHHHHhcchhhhHhhHHHHHhhhh-hh-----------HHHHHH
Confidence 346666777799999999999999876663 2223456678999999999999998760 00 012444
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+...-..+...-++|+.+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+.-.-. .|.
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe 158 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE 158 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh
Confidence 444455566677899999999999999988877665432 24568899999998877632110 000
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----------RKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----------~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
. .......+...++.|.+.|...+ ....++-+||..|+-.|+|+.|+..-+.-+.
T Consensus 159 e---------------~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ 223 (639)
T KOG1130|consen 159 E---------------KGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE 223 (639)
T ss_pred h---------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH
Confidence 0 00000111122333333333321 1167899999999999999999999888777
Q ss_pred hcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 004336 612 IRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 683 (760)
Q Consensus 612 ~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~ 683 (760)
+... +++.++|.+|...|+++.|+++|+..+.+....+.-- . .+...+
T Consensus 224 ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------v---------------EAQscY 279 (639)
T KOG1130|consen 224 IAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------V---------------EAQSCY 279 (639)
T ss_pred HHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------H---------------HHHHHH
Confidence 5332 7899999999999999999999998765443221100 1 123456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 684 YRAAVLMDSHKENEAIAELSRAIAFKADLH-------LLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~kal~~~p~~~-------~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.||..|.-...+.+||+++.+-+.+..... ..|..+..+...|..++|+...++.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 778888888888888888887776543322 223446666677888888877776665
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=4.1e-12 Score=120.11 Aligned_cols=125 Identities=12% Similarity=-0.031 Sum_probs=97.1
Q ss_pred HHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHH
Q 004336 403 EHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 482 (760)
Q Consensus 403 ~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la 482 (760)
..+|+++++++|++ +..+|.++...|++++|...+ .+++..+|.+..+++.+|
T Consensus 13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDF------------------SWLVMAQPWSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCCCcHHHHHHHH
Confidence 45677788887765 234677777888888888877 788888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
.++...|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++++.|++ ..+.+++.+...
T Consensus 66 ~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 66 GTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888887 666666655443
No 94
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=121.23 Aligned_cols=134 Identities=20% Similarity=0.339 Sum_probs=114.3
Q ss_pred CCccceeEEEEec---CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCCh-
Q 004336 177 GDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP- 252 (760)
Q Consensus 177 ~~~~~~dv~~~~~---~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~- 252 (760)
+.+.++||+|.++ ++.||||+.|||+.|++.+ |.++-.|.. ++.++. +++++++...+.++||..|+ +.+
T Consensus 62 Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk~d 135 (280)
T KOG4591|consen 62 EKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FKED 135 (280)
T ss_pred hcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cccc
Confidence 5677999999998 5789999999999999764 333333332 344555 89999999999999999997 654
Q ss_pred -hhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCc
Q 004336 253 -NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (760)
Q Consensus 253 -~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~ 317 (760)
+-..++.++||+||++-|+..|+.-+...+ +++||+.++++|++.+...|..-|...+...+|.
T Consensus 136 D~~L~el~e~An~FqLe~Lke~C~k~l~a~l-~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~d 200 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLELLKERCEKGLGALL-HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDD 200 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 456899999999999999999999999998 7999999999999999999999999998888876
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=7.6e-10 Score=124.71 Aligned_cols=289 Identities=16% Similarity=0.039 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
+.+.....++...|++++|+.++ .+....-.+.....-..|.++.++|++++|...|+..++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L------------------~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL------------------EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777888999999999999999 666666788888889999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhh-H
Q 004336 504 HAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP-S 577 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~-----g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~-~ 577 (760)
.+|++...+..+..+.... .+.+.-...|++.....|...+...+....... ..+......| .
T Consensus 67 rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-----------~~F~~~~~~yl~ 135 (517)
T PF12569_consen 67 RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-----------DEFKERLDEYLR 135 (517)
T ss_pred HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-----------HHHHHHHHHHHH
Confidence 9999999999888887333 356777888888888887763222222222111 3333333333 3
Q ss_pred hhccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------cch----HHHHHHHHHHHHcCCHHHHHH
Q 004336 578 DRLRK--GQALNNLGSVYVDCGQLDLAADCYSNALKI---------------RHT----RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 578 ~~l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------------~~~----~a~~~La~~~~~~g~~~~A~~ 636 (760)
..+++ +..+.++-.+|....+..-....+...... .++ .+++.+|..|...|++++|+.
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444 677777777777555544333444333220 122 467889999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Q 004336 637 EMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK--A 710 (760)
Q Consensus 637 ~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~--p 710 (760)
+.+++|+..|.....|...+ ..|++.+|...++.|-.+|+.+-.+....+..+.+.|+.++|.+.+..-.... |
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999998887765 45999999999999999999999999999999999999999999887654433 1
Q ss_pred Cc-----HHHH--HH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 711 DL-----HLLH--LR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 711 ~~-----~~~~--l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
.. ...| +. |..|.+.|++..|+..|..+.+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1344 22 88899999999999999988764
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=3.7e-11 Score=119.83 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=95.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSH--CEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~-~~~g~--~eeAl~~~~~al~l~p~ 541 (760)
++++..+|+++..|+.+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+
T Consensus 63 ~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN 142 (198)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Confidence 8888888888889999999888899999999999999988898888888888864 66677 58888999999888888
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+ ..++..+|..+...|++++|+.+|+++++..|+
T Consensus 143 ~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 143 E----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred C----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8 778888888888888888888888888887666
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=2.1e-11 Score=115.24 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=106.5
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++..|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+..+ .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~y------------------~ 82 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW------RAHIALAGTWMMLKEYTTAINFY------------------G 82 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHhhHHHHHHHH------------------H
Confidence 45678888888899999999999999999996 99999999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
+++..+|+++.+++++|.++...|++++|+..|+++++..|+++..+.++|.+....
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877643
No 98
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=9.6e-12 Score=128.97 Aligned_cols=236 Identities=15% Similarity=0.098 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHH
Q 004336 365 TVCFLERLLESAETD-RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 443 (760)
Q Consensus 365 ~~~lle~l~~~a~~~-~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~ 443 (760)
.+.+++..++...+. ......|.++|..|+..++|++|+++-..=|.+...-.+..|...+.-+||..+...|.|++|+
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 344444444444333 3344567789999999999999999877655554333334455567778999999999999999
Q ss_pred HHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 004336 444 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC--------------------PEAAMRSLQLARQ 503 (760)
Q Consensus 444 ~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------------~~~Ai~~l~kal~ 503 (760)
......- .+.+-+...-..+.++|++|.+|...|+ ++.|.++|..-++
T Consensus 116 ~cc~rhL------------d~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 116 TCCFRHL------------DFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred HHHHHHh------------HHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 8761000 0122222223457899999999998763 2345555554444
Q ss_pred hCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhH
Q 004336 504 HAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 577 (760)
Q Consensus 504 ~~p~------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~ 577 (760)
+... ...++-+||+.|+-+|+|++|+...+.-+.+...+ |.-...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------GDrAae----------------------- 234 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------GDRAAE----------------------- 234 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh------hhHHHH-----------------------
Confidence 4322 23467789999999999999999888777664444 110011
Q ss_pred hhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 578 ~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
..++.++|.++.-.|+++.|+++|+.++.+ ... ...|.||..|....++.+|+.+..+-+.+..
T Consensus 235 -----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 235 -----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred -----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999887763 221 6778899999999999999999888776655
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.32 E-value=8.7e-10 Score=129.41 Aligned_cols=238 Identities=10% Similarity=-0.033 Sum_probs=161.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
.....++.++...+...+++++|+...+.+++..|+.. ..++.+|.++.+.++++.+... .+.+......+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i------~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI------SALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce------ehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchh
Confidence 34456777888888888999999999999999999996 9999999999999998887665 4444433333344
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+..+.+.+...+.+..+++.+|.+|.+.|+.++|...|+++++.+|+++.++.++|..|... ++++|+.++.+++..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 455566666667777777788888888888888888888888888888888888888777777 777777777777632
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
+...++|.++.+++.+.+..++. +.
T Consensus 179 -----------------------------------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 179 -----------------------------------------------------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred -----------------------------------------------------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 44455666667777776665555 22
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004336 618 HQG-LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~-La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~ 690 (760)
+.. +-.+....| +..+...+.-+.+ ......++++++..++.+++.+|++..+...++.+|.
T Consensus 206 f~~i~~ki~~~~~-~~~~~~~~~~l~~----------~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 FLRIERKVLGHRE-FTRLVGLLEDLYE----------PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhc-cchhHHHHHHHHH----------HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 222222222 3333333332222 2223356677777777777777777777777776665
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=1.4e-10 Score=135.31 Aligned_cols=150 Identities=10% Similarity=-0.047 Sum_probs=139.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 369 le~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
|-++...+....+.+.++..+|.+...+|++++|+.+++.++++.|++. .+...++.++.+.+++++|..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~-- 143 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------EAFILMLRGVKRQQGIEAGRAEI-- 143 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhccHHHHHHHH--
Confidence 4445555666677788999999999999999999999999999999995 99999999999999999999999
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
++++..+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|
T Consensus 144 ----------------~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 144 ----------------ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred ----------------HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCh
Q 004336 529 LRKAEESIQMKRSF 542 (760)
Q Consensus 529 l~~~~~al~l~p~~ 542 (760)
...|+++++...+-
T Consensus 208 ~~~~~~a~~~~~~~ 221 (694)
T PRK15179 208 RDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHhhCcc
Confidence 99999999876554
No 101
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.30 E-value=8.2e-12 Score=129.02 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=127.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeE--ecCCCCCHHHHHHHHhccccCccCCCChhh
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDID--LSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~--~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~ 254 (760)
.+++-+||++++=|.+.+-|+.-|. -|+||.+||.|.++|+.+..|. |++..|+..+|..++.=.|...|. |..+.
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~d 142 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLSD 142 (488)
T ss_pred hcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHHH
Confidence 4667799999999999999999985 5899999999999999998664 556689999999999999999997 99999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcc
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~ 318 (760)
|..+|++|.+|++++|.+-|.+-+...+ ++.++.++++.+-+.....+...|.+.++-++-..
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~l-spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i 205 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETL-SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTI 205 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhc-ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhh
Confidence 9999999999999999999999999999 79999999999999999999999999998776543
No 102
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.9e-08 Score=106.59 Aligned_cols=337 Identities=10% Similarity=-0.030 Sum_probs=229.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..|...|..-..++++..|...|++||..+..+. ..|.-.+..-++..+...|..++
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i------tLWlkYae~Emknk~vNhARNv~----------------- 130 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNI------TLWLKYAEFEMKNKQVNHARNVW----------------- 130 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc------hHHHHHHHHHHhhhhHhHHHHHH-----------------
Confidence 4566777777888999999999999999998775 66777788888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+++..-|.--..|+....+-..+|+...|.+.|++-++..|+ ..+|...-..-...+..+.|...|++.+-..|+..
T Consensus 131 -dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 131 -DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred -HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 8888888888888888888888888888888888888888775 35555555556666677777777777766666655
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-------HHHHHHHHHHHHHcCCHHHHHHH-----------
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------GQALNNLGSVYVDCGQLDLAADC----------- 605 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------~~a~~~Lg~~y~~~g~~~eA~~~----------- 605 (760)
.|...+..-... |...-+...|+.+... ...+...+..-..++.++.|...
T Consensus 209 ~wikyarFE~k~-----------g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 209 NWIKYARFEEKH-----------GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 555444443333 2222222222222111 11222222222222333333322
Q ss_pred ---------------------------------HHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 606 ---------------------------------YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 606 ---------------------------------~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
|++.++.+|. ++|...-++-...|+.+.-.+.|+++|...|+...
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 3333333444 78888888888889999999999999988884221
Q ss_pred ---------HHHHHH-----hcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 651 ---------AYEKRS-----EYCDRELTRADLEMVTQLDPLR----VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 651 ---------~~~~~~-----~~~~~~~A~~~l~kal~l~p~~----~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
++...+ ...+.+.+.+.|+.++.+-|.. +..|...|.-..++.+...|...+-.|+...|.+
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 111111 2357778888888888888854 3456667777778888888888888888888877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 713 HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 713 ~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
....--..+-.++++++.....|++-|+.+|.+-.++.-|+.+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 65543345556667888888888888888888877776665543
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.3e-09 Score=114.61 Aligned_cols=304 Identities=18% Similarity=0.166 Sum_probs=205.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+...|+|++|.....+++...|++. .+.+-.-.+..+.++|+.|+... +.-.....
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~i------------------kk~~~~~~ 77 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLI------------------KKNGALLV 77 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHH------------------Hhcchhhh
Confidence 3456799999999999999999996 88888888889999999999666 22111111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
. ....|..+.+.+++|..++|+..++ ..++.+...+...|.+++.+|+|++|+..|+..++.+.+. +........
T Consensus 78 ~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 78 I-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred c-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 1122788999999999999999998 4566667788899999999999999999999998876655 322221111
Q ss_pred --HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------c---ch-
Q 004336 552 --LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----------R---HT- 615 (760)
Q Consensus 552 --l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----------~---~~- 615 (760)
-... ...+.+....- ....-+.++|.+.++...|+|.+|++.+++|+++ + +.
T Consensus 154 a~~a~l----------~~~~~q~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~ 221 (652)
T KOG2376|consen 154 AVAAAL----------QVQLLQSVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE 221 (652)
T ss_pred HHHHhh----------hHHHHHhccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 1110 00011111000 0112678899999999999999999999999552 1 00
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH----HHHH------hcCC-------------HH-------
Q 004336 616 ---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY----EKRS------EYCD-------------RE------- 662 (760)
Q Consensus 616 ---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~----~~~~------~~~~-------------~~------- 662 (760)
.....++.++..+|+..+|...|...+...+.+.... +.+. .+.+ ..
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 4678899999999999999999999999887332110 0000 0000 00
Q ss_pred -----HH--------------HHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--HHH
Q 004336 663 -----LT--------------RADLEMVTQLD----PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL--LHL 717 (760)
Q Consensus 663 -----~A--------------~~~l~kal~l~----p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~--~~l 717 (760)
++ ....++..... |..............+...+.+|++.+....+..|.... +.+
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 00 00111111112 222222233444444445788899999988888888842 235
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 004336 718 RAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 718 ~a~~~~~~g~~~~A~~~~~ 736 (760)
.+.+...+|+++.|++.+.
T Consensus 382 ~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 5889999999999999999
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=8.3e-11 Score=117.31 Aligned_cols=123 Identities=9% Similarity=0.030 Sum_probs=117.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.++.++++..++++++.+|++. .+|..+|.++...|++++|+..+ .+++..+|+++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~g~~~~A~~a~------------------~~Al~l~P~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS------EQWALLGEYYLWRNDYDNALLAY------------------RQALQLRGENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCH
Confidence 5588999999999999999996 99999999999999999999999 99999999999
Q ss_pred HHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 476 VLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 476 ~~~~~la~~~-~~~g~--~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.++..+|.++ ...|+ +++|.+.++++++.+|++..++..+|..+...|++++|+..++++++..|..
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999974 77787 5999999999999999999999999999999999999999999999998877
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.29 E-value=4.6e-10 Score=130.98 Aligned_cols=171 Identities=12% Similarity=-0.012 Sum_probs=127.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+.++-.+.-..+....+...+-+++..-.+++ ...+++.+||.+..+.|.+++|..++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~La~i~~~~g~~~ea~~~l----------------- 109 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYP---HTELFQVLVARALEAAHRSDEGLAVW----------------- 109 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCCcHHHHHHH-----------------
Confidence 4455566666667777777777777777766665 22467777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++..|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.|++++|+..|++++..+|++
T Consensus 110 -~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~- 187 (694)
T PRK15179 110 -RGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF- 187 (694)
T ss_pred -HHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..++..+|..+...|+.++|...|+++++...+
T Consensus 188 ---------------------------------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 188 ---------------------------------------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 677888888888888888888888888775444
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=7.7e-09 Score=127.68 Aligned_cols=325 Identities=15% Similarity=0.068 Sum_probs=220.9
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHh-hCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~-l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
...+......|++..+..+++.+-. ....++ ......+.++...|++++|..++ .
T Consensus 378 ~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a~~~~~~g~~~~a~~~l------------------~ 433 (903)
T PRK04841 378 LQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQAWLAQSQHRYSEVNTLL------------------A 433 (903)
T ss_pred HHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 3344445555566555555443200 001111 33345666667778888887777 3
Q ss_pred HHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCHHHHHHH
Q 004336 466 QMLESDAP---------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----ERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 466 ~al~~~p~---------~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
++....+. .......+|.++...|++++|...+++++...+... .+...+|.++...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33322111 234455678889999999999999999998654422 3567789999999999999999
Q ss_pred HHHHHhhcCCh-------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------------HHHHHHHHHH
Q 004336 532 AEESIQMKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------GQALNNLGSV 592 (760)
Q Consensus 532 ~~~al~l~p~~-------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------~~a~~~Lg~~ 592 (760)
+++++...... .+...++.++... |.+++|...+.+.+.. ...+..+|.+
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-----------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQ-----------GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 99998764322 3445667777776 7777777666655221 2345678999
Q ss_pred HHHcCCHHHHHHHHHHHHhh----cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH----H-H------HHH
Q 004336 593 YVDCGQLDLAADCYSNALKI----RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA----S-A------YEK 654 (760)
Q Consensus 593 y~~~g~~~eA~~~~~~Al~~----~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~----~-~------~~~ 654 (760)
+...|++++|...+++++.. .+. ..+..+|.++...|++++|...+.++....+... . . ...
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 99999999999999999874 111 5667789999999999999999999877643211 0 0 011
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHH-HHHHHHH
Q 004336 655 RSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADL------HLLH-LRAAFHE 723 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~------~~~~-l~a~~~~ 723 (760)
....|+.+.|...+.......+.... .+..+|.++...|++++|...+++++...... ...+ +.+..+.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 12347788888877665543322222 24678999999999999999999998753221 1122 4488888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcH
Q 004336 724 HTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 724 ~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999998765433
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.28 E-value=3.4e-10 Score=112.65 Aligned_cols=175 Identities=18% Similarity=0.062 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHH
Q 004336 401 EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480 (760)
Q Consensus 401 eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~ 480 (760)
.+...+-+....+|++. .. ..++..+...|+-+.+..++ .+....+|.+..+...
T Consensus 51 ~a~~al~~~~~~~p~d~------~i-~~~a~a~~~~G~a~~~l~~~------------------~~~~~~~~~d~~ll~~ 105 (257)
T COG5010 51 GAAAALGAAVLRNPEDL------SI-AKLATALYLRGDADSSLAVL------------------QKSAIAYPKDRELLAA 105 (257)
T ss_pred HHHHHHHHHHhcCcchH------HH-HHHHHHHHhcccccchHHHH------------------hhhhccCcccHHHHHH
Confidence 35566667778889885 66 77888888888888888888 8888888999999989
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
+|....+.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------------------ 167 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------------------ 167 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 561 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--~~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.+.+|+|..|.-.|+++.|..++..+....+ ..+..+++.+....|++.+|.+..
T Consensus 168 ----------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 168 ----------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ----------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88999999999999999999999999887443 389999999999999999988776
Q ss_pred HH
Q 004336 639 TK 640 (760)
Q Consensus 639 ~~ 640 (760)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=8.7e-09 Score=105.53 Aligned_cols=338 Identities=11% Similarity=-0.057 Sum_probs=215.0
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccc-----------cccCC
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW-----------SSVDD 457 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~-----------~~~~d 457 (760)
+|..++..|+|++|...|+.+...+.-+. +.+.+++.++.-.|+|.+|.......... -...|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCc------ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 45566666699999999999887554443 77888999999999999998776110000 00011
Q ss_pred cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 458 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+.+..+++.+ .+..+-...+|.+....-.|.+|+..|++.+..+|+....-.+++.+|+++.-++-+.+.+.--++
T Consensus 137 Ek~~~~fh~~L---qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 137 EKRILTFHSSL---QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHHH---hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 11111122222 222344566777888888999999999999999999998999999999999999999999999999
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhH--------H-----------------HHHHhhhHhhccH-HHHHHHHH
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSL--------L-----------------EDALKCPSDRLRK-GQALNNLG 590 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~--------l-----------------eeAl~~~~~~l~~-~~a~~~Lg 590 (760)
..|+. -+...++..+...-.... ....+.. + +.|++.....++. +++..++.
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~-ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRT-AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccch-hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 99998 666666655544311111 1111111 1 1122222222222 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcc----------CcHHHHHHHHh
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK---KAR----------NNASAYEKRSE 657 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~---~~~----------~~~~~~~~~~~ 657 (760)
..|..+++..+|+...+.. .+..+.-+...|.++...|+-....+.++-+-. .-. .-..+......
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeecccccHHHHHHHHhhc-CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 9999999999999877542 333335555667777777766555554443222 111 11111122223
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHcCCHHHHHHHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~a~~~~~~g~~~~A~~~~ 735 (760)
+.++++.+.++...-..--++-...+++|.++...|++.+|.+.|-+.-...-.+..++ +.+.+|.+.|..+-|...+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567777666666666666666777888888888888888888876654332333333 4477777777777776655
Q ss_pred HH
Q 004336 736 RA 737 (760)
Q Consensus 736 ~~ 737 (760)
-+
T Consensus 452 lk 453 (557)
T KOG3785|consen 452 LK 453 (557)
T ss_pred Hh
Confidence 43
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=3.2e-10 Score=105.83 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=110.0
Q ss_pred HHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 404 HLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 483 (760)
Q Consensus 404 ~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~ 483 (760)
..|++++..+|++. .+...+|..+...|++++|..++ ++++..+|.++.+++.+|.
T Consensus 4 ~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHH
Confidence 46889999999995 88899999999999999999999 9999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++++|+..+++++..+|.++..++.+|.++...|++++|+..++++++.+|++
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999988
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.21 E-value=3.3e-09 Score=124.62 Aligned_cols=215 Identities=10% Similarity=-0.068 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+...+...+++++|+... ..++..+|+....++.+|.++.+.+++++|... .++.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~------------------~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDIC------------------EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 77777777777888888888777 777788888888888888888777777776655 5555
Q ss_pred hCCCcH-------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 504 HAASDH-------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 504 ~~p~~~-------------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
..+.+. .+++.+|.+|..+|+.++|...|+++++.+|++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------------------- 149 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------------------- 149 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----------------------
Confidence 544444 677777777777788888888888888777777
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
+.+++++|..|... ++++|+.++.+|+.. +...+++.++.....+.+..
T Consensus 150 ------------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 150 ------------------PEIVKKLATSYEEE-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ------------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhc
Confidence 67777777777777 788888888777643 55566777777777777777
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHH
Q 004336 645 ARNNASAYEKRSEYCDRELTRADLEMVTQL--DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAF 721 (760)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~A~~~l~kal~l--~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~ 721 (760)
.|......... .++.... .-.....+.-+-..|...++|++++..++.+++..|.+..+... +.+
T Consensus 199 ~~~d~d~f~~i------------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 199 NSDDFDFFLRI------------ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred CcccchHHHHH------------HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 77555443322 1111111 11122334445567888899999999999999999998766533 444
Q ss_pred HH
Q 004336 722 HE 723 (760)
Q Consensus 722 ~~ 723 (760)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 44
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=9.1e-09 Score=101.56 Aligned_cols=175 Identities=20% Similarity=0.174 Sum_probs=148.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+-+.-.+.+..|+.+.|..++++.....|+.. ....+.|..+...|++++|+.++ .
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~------RV~~lkam~lEa~~~~~~A~e~y------------------~ 110 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSK------RVGKLKAMLLEATGNYKEAIEYY------------------E 110 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhchhhHHHHH------------------H
Confidence 33444555667799999999999999999996 88888999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
..++.+|.+...+-+.-.+...+|+.-+|++.+...++..+.++++|..++.+|...|+|++|.-.+++.+-++|.+
T Consensus 111 ~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--- 187 (289)
T KOG3060|consen 111 SLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--- 187 (289)
T ss_pred HHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhcch--HHHHH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD---CGQLDLAADCYSNALKIRHT--RAHQG 620 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~---~g~~~eA~~~~~~Al~~~~~--~a~~~ 620 (760)
+..+..+|.+++. ..++.-|..+|.+++++++. +++++
T Consensus 188 -------------------------------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 188 -------------------------------------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 2223333333333 34678899999999998885 56665
Q ss_pred HHHH
Q 004336 621 LARV 624 (760)
Q Consensus 621 La~~ 624 (760)
+-.+
T Consensus 231 I~lc 234 (289)
T KOG3060|consen 231 IYLC 234 (289)
T ss_pred HHHH
Confidence 5443
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-07 Score=102.16 Aligned_cols=350 Identities=14% Similarity=0.070 Sum_probs=197.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
+++|...|+++ ..++|+..++ ..++... ..+.+.|.++++.|+|++|...|+-... ...++.+
T Consensus 83 fEKAYc~Yrln-------k~Dealk~~~---~~~~~~~------~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLN-------KLDEALKTLK---GLDRLDD------KLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQD 145 (652)
T ss_pred HHHHHHHHHcc-------cHHHHHHHHh---cccccch------HHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHH
Confidence 45666666666 8888888877 4455553 5677778888888888888877743322 1112211
Q ss_pred c--------HHH-----HHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCc--------HH
Q 004336 460 S--------LSV-----IYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASD--------HE 510 (760)
Q Consensus 460 s--------l~~-----~~~al~~~p~-~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------p~~--------~~ 510 (760)
+ +.. ..+.+...|+ .-+.+|+.|.++...|+|.+|++.+++++.+. ..+ ..
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 000 1222222343 56789999999999999999999999995431 111 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH-----HHHHHHHHcccCCCCc----chhhhh-HHHHHHhhhHhhc
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-----FLKAYALADSSQDSSC----SSTVVS-LLEDALKCPSDRL 580 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~-----~~la~~l~~~~~~~~~----~~~~~~-~leeAl~~~~~~l 580 (760)
+...++.++..+|+.++|...|...++.+|-++.. +++-.+-......++. -..... ..+..+..+.. -
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~ 304 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-K 304 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 57789999999999999999999999998877222 2222211111111100 000001 11111111111 1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHH---
Q 004336 581 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYE--- 653 (760)
Q Consensus 581 ~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~--- 653 (760)
++..++.+.+...+..+.-+.+.+.-...-...|. .++. ......+...+..|...+....+..|... .+..
T Consensus 305 qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 12556666777666666666655544333222332 1221 12222222357777777777777777541 1111
Q ss_pred -HHHhcCCHHHHHHHHHH--------HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHH----H
Q 004336 654 -KRSEYCDRELTRADLEM--------VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF----KADLHLL----H 716 (760)
Q Consensus 654 -~~~~~~~~~~A~~~l~k--------al~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~----~p~~~~~----~ 716 (760)
.....|++..|+..+.. ..... ..+.+-..+-..++..++-+-|...+..|+.. .+....+ +
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 12344777777777762 22221 12333344455666666655566666555532 1122211 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 717 LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 717 l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
..+.+..+.|+-++|...+++.++.+|++.+++
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 336666666888888888888888888888765
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.16 E-value=5.1e-10 Score=104.44 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~- 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD- 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 4788888888888888899999999999999999999888888888899999999998899999999999888888887
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...++.+|.++...|++++|+..|+++++.+|.
T Consensus 85 ---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 ---------------------------------------PRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ---------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 678888888888888888888888888887665
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=5.3e-09 Score=104.27 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=143.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..+.|++
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-- 133 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-- 133 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC--
Confidence 5667778999888 9999999999999999999999888899998888889999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
..+|+.+|.+|.+.|++++|...|.++++..+. .+..++|
T Consensus 134 --------------------------------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 134 --------------------------------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred --------------------------------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 788899999999999999999999999996555 8889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..+...|+++.|..++..+.. ..+.+..+..+++.+...+|++++|.+..
T Consensus 176 ms~~L~gd~~~A~~lll~a~l------------------------------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYL------------------------------SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHh------------------------------CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999998777666665433 33445566677788888888888888776
Q ss_pred HHHH
Q 004336 703 SRAI 706 (760)
Q Consensus 703 ~kal 706 (760)
.+-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=5.5e-10 Score=113.18 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=84.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHH
Q 004336 655 RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALR 733 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~ 733 (760)
....+++.+|+..|.+|++++|+++..|.++|.+|.++|.++.|++..+.++.++|.....|.+ +.+|..+|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3344677888888888888888888888888888888888888888888888888888877766 788888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Q 004336 734 DCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 734 ~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.|+++|+++|++.....-+..++
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888888887777666655
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=2.3e-08 Score=112.79 Aligned_cols=265 Identities=12% Similarity=0.053 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+.++......++.+.|++++|++.++..-....+....+-..|.++..+|++++|...|+..++.+|++ ..+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 356677788899999999999999999988889999999999999999999999999999999999999 7777777776
Q ss_pred Hccc-CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 553 ADSS-QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL-AADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 553 ~~~~-~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~e-A~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
.... ..+.........+++-...|.+. .+...+...+..-..|.. +..+....+..+-+..+.++-.+|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRS----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccc----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 4432 11222233334444444433332 222222222222223433 33444555555555666666666664444
Q ss_pred HHHHHHHHHHHHHhc---------------cCc--HHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKA---------------RNN--ASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 631 ~~~A~~~l~~al~~~---------------~~~--~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
..-....+....... |+. .|++.-++ ..|++++|+..++++++..|+.++.|...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 333333333333221 111 24444333 348999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 690 MDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...|++.+|.+.++.|..+++.+..+... +.++.+.|+.++|.+.+...-.-+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999988877755 788888899999999888765443
No 117
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.12 E-value=5.3e-11 Score=132.18 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=115.1
Q ss_pred ceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc-cCccCC----CChhhH
Q 004336 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV-TGSLNG----VTPNLL 255 (760)
Q Consensus 181 ~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y-t~~~~~----~~~~~v 255 (760)
.|||++. +|++++||+.+|.+.+.||..||..-+.|+..-.+... -|+.+.|+.|+||.| +.++.. -..+-.
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3555555 78889999999999999999999999999998666654 477999999999999 665531 145678
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCc
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~ 317 (760)
.++|..|+.+-+.+|+..|+.-|-..+ +..+|-.++++|.-.++..|...|++|+..++..
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~ 849 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEF 849 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999988 7999999999999999999999999998776543
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.1e-09 Score=111.11 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
...+|..+-.-|.-+++.++|.+|+..|.+||+++|+++ -.|.+.+.+|.++|.++.|+.-.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA------VyycNRAAAy~~Lg~~~~AVkDc------------ 138 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA------VYYCNRAAAYSKLGEYEDAVKDC------------ 138 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHhcchHHHHHHH------------
Confidence 345666677778888888899999999999999999996 56667888888888888888888
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+.++.++|....+|.++|.+|..+|++++|++.|+++++++|++...+.+|.++-...+...
T Consensus 139 ------e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 139 ------ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ------HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888877777777766666554
No 119
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=5.2e-07 Score=96.02 Aligned_cols=294 Identities=12% Similarity=0.026 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..|.-.|..-..++++..|...+ ++++..+..+..+|...+..-++.++...|...+.+|+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~------------------ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVF------------------ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH------------------HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 56666777777888888888888 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--cc
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LR 581 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~ 581 (760)
+-|.....|+..-.+-..+|+..-|.+.|++-+...|+..+|......-... ..++.|..+|++. ..
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----------keieraR~IYerfV~~H 204 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----------KEIERARSIYERFVLVH 204 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHheec
Confidence 9999999999998888999999999999999999999987777665554444 7788999999988 33
Q ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--HHHHH
Q 004336 582 K-GQALNNLGSVYVDCGQLDLAADCYSNALKI-RHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--ASAYE 653 (760)
Q Consensus 582 ~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--~~~~~ 653 (760)
| ...|...+..-.+.|+...|...|++|++. ... ..+...|.--..+..++.|.-.|+-++..-|.. ..+|.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k 284 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYK 284 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 4 788888999999999999999999999983 222 455566666677888999999999999988855 33333
Q ss_pred HH----HhcCCHH---HH-----HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--H-----
Q 004336 654 KR----SEYCDRE---LT-----RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH--L----- 714 (760)
Q Consensus 654 ~~----~~~~~~~---~A-----~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~--~----- 714 (760)
.. ..+|+.. ++ .-.|++.+..+|.+-.+|...-.+....|+.+.-.+.|++|+...|... .
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence 32 2345532 22 3357888999999999999998888899999999999999998777543 1
Q ss_pred --HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcH
Q 004336 715 --LHLRAAFHE--HTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 715 --~~l~a~~~~--~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+|++-.+|. ...|.+.+.+.|+.+|++-|...
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 123334443 23788999999999999888643
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=3e-09 Score=118.44 Aligned_cols=218 Identities=15% Similarity=0.120 Sum_probs=163.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|........++.++...|-...|+..|++. ..|-....+|...|+..+|.....+-++.+|+...|..+|.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 556667778999999999999999999874 567778899999999999999999999955555889999999
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcC
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKN 629 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g 629 (760)
..+. ..+++|.+...... +.+...+|......++|+++..+++..++++|- ..|+++|-+..+.+
T Consensus 467 ~~d~-----------s~yEkawElsn~~s--arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 467 LHDP-----------SLYEKAWELSNYIS--ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred ccCh-----------HHHHHHHHHhhhhh--HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 9988 78888887765543 335566677777789999999999999999887 89999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 630 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
++..|.+.|... +.++|++..+|++++.+|+..|+-.+|...+++|++.+
T Consensus 534 k~q~av~aF~rc------------------------------vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 534 KEQAAVKAFHRC------------------------------VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHHHHHHHH------------------------------hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 886666666555 45555555566666666666666666666666666665
Q ss_pred CCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 710 ADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 710 p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
-++...|.+ ..+....|.+++|++.|.+.+.
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 555555433 3344445666666666666554
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=4.8e-08 Score=96.55 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+.++-.+.+.+.+...+.-..-......+..+.++....|+.+.|...+ .+.-...|+...+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~------------------~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCI------------------NQLRDRFPGSKRV 88 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHH------------------HHHHHhCCCChhH
Confidence 4455555555555433322000000134445666667777888887777 7766667888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
-...|..+...|++++|+++|+..++.+|.+...+-..-.+...+|+.-+|++.+..-++..+.+
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------------- 153 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------------- 153 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---------------
Confidence 88888888888888888888888888888888888877778888888888888888888887777
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
.++|..++.+|+..|+|++|.-||++.+-+.|. ..+..+|.+++-+|..
T Consensus 154 -------------------------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~---- 204 (289)
T KOG3060|consen 154 -------------------------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA---- 204 (289)
T ss_pred -------------------------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence 899999999999999999999999999988877 6677888888887743
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 684 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~ 684 (760)
.+..-|.++|.++++++|.+..+++.
T Consensus 205 -----------------------eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 205 -----------------------ENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred -----------------------HHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 12345556666666666655555543
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=1.1e-07 Score=117.61 Aligned_cols=298 Identities=14% Similarity=0.014 Sum_probs=213.3
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc---chhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYR---MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~---~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
...+.+++..|++++|..+++.+....+... ...........++.++...|++++|..++
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~----------------- 475 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLA----------------- 475 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHH-----------------
Confidence 4556677788999999999999876543211 11112345566888899999999999999
Q ss_pred HHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 464 IYQMLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 464 ~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
++++...+.. ..+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+
T Consensus 476 -~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 476 -ELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred -HHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7776644332 2356778999999999999999999998763321 245678899999999999999999
Q ss_pred HHHHhhcCC--------h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc---------HHHHHHHHHHHHH
Q 004336 533 EESIQMKRS--------F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR---------KGQALNNLGSVYV 594 (760)
Q Consensus 533 ~~al~l~p~--------~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~---------~~~a~~~Lg~~y~ 594 (760)
++++..... . ..+..+|.++... |++++|...+.+.+. ....+..+|.++.
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-----------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 999875221 1 2344566677666 777777766665521 1556777899999
Q ss_pred HcCCHHHHHHHHHHHHhhcch-----HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhccCcH--------HHHHHHHh
Q 004336 595 DCGQLDLAADCYSNALKIRHT-----RAHQ----GLARVHFLKNNKTTAYEEMTKLIKKARNNA--------SAYEKRSE 657 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~-----~a~~----~La~~~~~~g~~~~A~~~l~~al~~~~~~~--------~~~~~~~~ 657 (760)
..|++++|...+.++..+... .... .....+...|+.+.|...+.......+... ........
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 999999999999999764211 1111 122445568999999998877554322111 11222345
Q ss_pred cCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 658 YCDRELTRADLEMVTQLD------PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~------p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
.|++++|...+++++... +....++..+|.++...|+.++|...+.++++......
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 589999999999998752 22345678899999999999999999999998765544
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=7.9e-09 Score=115.13 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=165.8
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.++.+++..|-...|+..|++. ..+-....+|...|+..+|..+. .+.
T Consensus 403 ~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~------------------~q~ 450 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEIN------------------RQE 450 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHH------------------HHH
Confidence 4455555566999999999886 34445667888888888998888 777
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
++ .|.++..|..+|.+....--|++|.++.+. .+..+...+|...+..++|+++...++.+++++|-.
T Consensus 451 le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq----- 518 (777)
T KOG1128|consen 451 LE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ----- 518 (777)
T ss_pred hc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----
Confidence 77 677888888888877777666666666544 244577888888888999999999999999999988
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVH 625 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~ 625 (760)
...|+.+|.+..+.++++.|.++|...+..+|. .+|++++.+|
T Consensus 519 -----------------------------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 519 -----------------------------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred -----------------------------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 789999999999999999999999999997776 9999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
.+.|+..+|...++++++- +-.++..|-|.-.+..+.|.+++|++.|.+.
T Consensus 564 i~~~~k~ra~~~l~EAlKc------------------------------n~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKC------------------------------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhhhHHHHHHHHHHhhc------------------------------CCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999987766666655544 4444555555566667777777777777776
Q ss_pred HHc
Q 004336 706 IAF 708 (760)
Q Consensus 706 l~~ 708 (760)
+.+
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=3.6e-08 Score=99.00 Aligned_cols=272 Identities=17% Similarity=0.121 Sum_probs=184.4
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 513 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~ 513 (760)
.+..+|+.|+..+ ..-.+.+|.+-..+..+|.+|....++..|..+|++.-...|.......
T Consensus 21 I~d~ry~DaI~~l------------------~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 21 IRDARYADAIQLL------------------GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHhhHHHHHHHH------------------HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 5667788888888 7788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc--cHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL--RKGQALNNL 589 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l--~~~~a~~~L 589 (760)
+.+..+++.+.+.+|+......... |.. +....-+.+.... +.+..+....++.. ..+...++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse-----------~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSE-----------GDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccc-----------ccCcchHHHHHhccCCCccchhccc
Confidence 9999999999999999988776543 222 2222222222222 22222222222222 127888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----cCcHH--HHH---HHHhc
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKA----RNNAS--AYE---KRSEY 658 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~--~~a~~~La~~~~~~g~~~~A~~~l~~al~~~----~~~~~--~~~---~~~~~ 658 (760)
|.+.++.|+|++|++-|+.|++... +-.-++++.++++.|+++.|+++...+++.. |..+. ... .++-.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 9999999999999999999999643 3677899999999999999999998888764 32110 000 00000
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHcCCHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLHLRAAFHEHTGDVLGAL 732 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~l~a~~~~~~g~~~~A~ 732 (760)
+-..-++..+. .+++..+.++++.|+++.|.+.+.. +.|... .+|- -.+-...|++.+..
T Consensus 231 Nt~~lh~Sal~----------eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN-~Al~n~~~~p~~g~ 296 (459)
T KOG4340|consen 231 NTLVLHQSALV----------EAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHN-QALMNMDARPTEGF 296 (459)
T ss_pred chHHHHHHHHH----------HHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhH-HHHhcccCCccccH
Confidence 01112222222 3344456778888888877766543 333221 2222 22223336677777
Q ss_pred HHHHHHHhcCCCcHHHH
Q 004336 733 RDCRAALSVDPNDQEML 749 (760)
Q Consensus 733 ~~~~~aL~l~P~~~~~l 749 (760)
+-++-.|+++|-.++++
T Consensus 297 ~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHHHHHHhcCCCChHHH
Confidence 77777777777655543
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.01 E-value=9.7e-09 Score=96.03 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=99.9
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH
Q 004336 467 MLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 467 al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
..... ++.-+..|.+|..+...|++++|...|+-+...+|.+.+.|++||.++..+|++++|+..|.+++.++|++
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--- 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--- 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 34455 67788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
+..+.++|.+++..|+.+.|.+.|+.++...
T Consensus 103 -------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -------------------------------------PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999998853
No 126
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=5.7e-08 Score=93.63 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.-.+|..++..|..|-..|-+.-|.-.|.+++.+.|+.+ ++++.+|..+...|+++.|...+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~eaF------------ 122 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEAF------------ 122 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHHHh------------
Confidence 456788888888888888899999999999999999997 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQ 537 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~-~~~al~ 537 (760)
...++++|....+..+.|..+.--|++.-|.+.+.+..+.+|+++-.-..|-.. ...-+..+|... .+++..
T Consensus 123 ------ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 123 ------DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ------hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998554333222 233456666544 455555
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LR--KGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+.+...|......+... .+...++.+....... +. -.++++.+|..|...|+.++|...|+-|+..+
T Consensus 196 ~d~e~WG~~iV~~yLgki--------S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 196 SDKEQWGWNIVEFYLGKI--------SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccHhhhhHHHHHHHHhhc--------cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 554444444444444333 0001222222222211 11 17889999999999999999999999988742
Q ss_pred ------chHHHHHHHHHHHHcCCHH
Q 004336 614 ------HTRAHQGLARVHFLKNNKT 632 (760)
Q Consensus 614 ------~~~a~~~La~~~~~~g~~~ 632 (760)
+..++..|+.++..+.+..
T Consensus 268 VynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 268 VYNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccchhh
Confidence 2256677777666554443
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.3e-06 Score=87.02 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 367 ~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.+-+.+.+..++....|..+|... .|++|++.|.++|..+|++. .....++.+|.+...++-+.+.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~-------HYQeAIdvYkrvL~dn~ey~------alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRM-------HYQEAIDVYKRVLQDNPEYI------ALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHhcChhhh------hhHHHHHHHHHhcchhhhHHHHH
Confidence 344445555555666666666666 99999999999999999995 66778999999999999998888
Q ss_pred hhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Q 004336 447 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL-------------------------- 500 (760)
Q Consensus 447 ~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~k-------------------------- 500 (760)
.--++..|+...+....+-.+++.=+-..|..-.+.
T Consensus 209 ------------------~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 209 ------------------KVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred ------------------HHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 666777788877777666655553222222221111
Q ss_pred --HHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH
Q 004336 501 --ARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 573 (760)
Q Consensus 501 --al~~~p~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl 573 (760)
|++.-|. -+++..+|..-|..+|+..+|+...+. ++|.. .-|...|.+....+...++. ..+.-|.
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSr----eHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSR----EHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcH----HHHHHHH
Confidence 1222221 357888888889999999999888775 46766 55677777776664433332 1222222
Q ss_pred hhhHhh----cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 574 KCPSDR----LR--KGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHTRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 574 ~~~~~~----l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
+.++-. .. .......++..++-..++++-+.++...-. .+.+...+++|.++...|++.+|.+.+-++
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 222211 00 022334456666667777777766654433 344467778888888888888888777654
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.96 E-value=1e-07 Score=95.72 Aligned_cols=171 Identities=13% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++..|......|+|.+|+..+ ++.+...|. -..+.+.+|.++...|++++|+..++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f------------------~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~ 66 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLF------------------EKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYE 66 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHH------------------HHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477888899999999999999999 788777665 46788999999999999999999999
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhh
Q 004336 500 LARQHAASD---HERLVYEGWILYDT-----------SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 565 (760)
Q Consensus 500 kal~~~p~~---~~a~~~Lg~i~~~~-----------g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~ 565 (760)
+.++..|++ +.+++.+|.+++.. +...+|+..|+..+...|+.
T Consensus 67 ~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S----------------------- 123 (203)
T PF13525_consen 67 RFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS----------------------- 123 (203)
T ss_dssp HHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-----------------------
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-----------------------
Confidence 999988875 46788888876543 34568899999999998887
Q ss_pred hhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHH
Q 004336 566 VSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~ 635 (760)
....+|.......... +.--..+|..|.+.|.|..|+..|+.+++.-|. .++..++..|...|..+.|.
T Consensus 124 -~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 124 -EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2233333222222111 556667899999999999999999999996554 78999999999999987443
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=1.1e-08 Score=107.95 Aligned_cols=253 Identities=14% Similarity=0.026 Sum_probs=166.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 485 LLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
++-.|+|.+++..++ ....++. ..+....+.+.+..+|+++..+.-....- .|...+...++..+...
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~-------- 79 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSP-------- 79 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTS--------
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCc--------
Confidence 445788888886666 2223332 34566777888888888887665443321 34446666666555442
Q ss_pred hhhhHHHHHHhhhHhhc----c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRL----R--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l----~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
..-+.++......+ . ........|.++...|++++|++.+.+. ...+.......++...++++.|.+.
T Consensus 80 ---~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 ---SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp ---TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ---cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 11122222222221 1 1334455677788888888888877664 3346666777888889999999988
Q ss_pred HHHHHHhccC-----cHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 638 MTKLIKKARN-----NASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 638 l~~al~~~~~-----~~~~~~~~~~~-~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
++.+-+.+.+ .+.+|..+..- ..+.+|...|+...+..+..+..++.+|.+.+.+|++++|.+.+.+++..+|+
T Consensus 154 l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8887666553 23333333222 35788999999988887888899999999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 712 LHLLHLR-AAFHEHTGDV-LGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~-~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
++..... ..+...+|+. +.+.+++.+....+|+|+-+.++-.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9977754 6666777887 66778888888899999977665443
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=2e-07 Score=95.97 Aligned_cols=174 Identities=9% Similarity=-0.056 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---FRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++..|......|++++|+..+ ++.+...|..+.+. +.+|.++.+.+++++|+..++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f------------------~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e 93 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 93 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 466778888889999999999999 99999999876554 889999999999999999999
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHc
Q 004336 500 LARQHAASD---HERLVYEGWILYDTS------------------HCEEGLRKAEESIQMKRSF----EAFFLKAYALAD 554 (760)
Q Consensus 500 kal~~~p~~---~~a~~~Lg~i~~~~g------------------~~eeAl~~~~~al~l~p~~----~a~~~la~~l~~ 554 (760)
+.++..|++ +.+++.+|.++...+ ...+|+..+++.++..|+. ++...+..+...
T Consensus 94 ~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 94 RFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 999998876 467888888764443 1357889999999999987 233333322222
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
. +.--...|..|.+.|.|..|+.-++.+++.-|. +++..++..|...|
T Consensus 174 l---------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 174 L---------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred H---------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 2 555567899999999999999999999995554 89999999999999
Q ss_pred CHHHHHHHHHHH
Q 004336 630 NKTTAYEEMTKL 641 (760)
Q Consensus 630 ~~~~A~~~l~~a 641 (760)
..++|.+....+
T Consensus 227 ~~~~a~~~~~~l 238 (243)
T PRK10866 227 LNAQADKVAKII 238 (243)
T ss_pred ChHHHHHHHHHH
Confidence 999998876643
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=1.9e-08 Score=94.04 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
.+..+.+|..+.+.|++++|...+ +-....+|.+...|+++|.++..+|++++|+..|.+++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f------------------~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLF------------------QLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 488999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++|+++..++++|.++...|+.+.|.+.|+.++...
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=3.8e-07 Score=98.23 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=112.1
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++..+|+.
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------- 373 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------- 373 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------
Confidence 3377888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
.....++|..|++.|++.+|+..++..+..+|. ..|..||+.|..
T Consensus 374 ---------------------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 374 ---------------------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred ---------------------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 678888999999999999999999998886665 888999999999
Q ss_pred cCCHHHHHHH
Q 004336 628 KNNKTTAYEE 637 (760)
Q Consensus 628 ~g~~~~A~~~ 637 (760)
+|+..+|...
T Consensus 421 ~g~~~~a~~A 430 (484)
T COG4783 421 LGNRAEALLA 430 (484)
T ss_pred hCchHHHHHH
Confidence 9988655433
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=1.7e-08 Score=110.15 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=96.4
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...|..++..|+|++|+..|++++..+|++. .++..+|.++...|++++|+..+ .+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~~a~~~~~~g~~~eAl~~~------------------~~ 61 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYADRAQANIKLGNFTEAVADA------------------NK 61 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HH
Confidence 3445566666699999999999999999985 88888999999999999999888 89
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++.++|.++.+++++|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus 62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888887775544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=6.3e-08 Score=104.12 Aligned_cols=147 Identities=17% Similarity=0.055 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..+++..+..+...|+++.|...+ ...+...|+|+..+-..+.++.+.|+.++|.+.+++++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 388999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
...|+....++++|.+|...|++.+|+..+++.+..+|++ ..|..++.++..+ |..
T Consensus 368 ~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~-----------g~~------------ 424 (484)
T COG4783 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL-----------GNR------------ 424 (484)
T ss_pred hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh-----------Cch------------
Confidence 9999999999999999999999999999999999999999 7777777777776 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+....+..|...|++++|+..+..+.+
T Consensus 425 -~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 425 -AEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455566777777777777777777665
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.89 E-value=2.8e-08 Score=108.42 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=103.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+...|..+...|++++|+..+ .+++..+|+++.+++.+|.+|...|++++|+..+++++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~------------------~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLY------------------TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445678888999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
|+++.+++.+|.+++.+|++++|+..|++++.++|++ .+...++.+....
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7777776664443
No 136
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=4.3e-05 Score=84.56 Aligned_cols=371 Identities=14% Similarity=0.071 Sum_probs=229.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhch--HHHHHHHHHHHHH
Q 004336 358 LDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGR--VAASQLHMLVREH 435 (760)
Q Consensus 358 ~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~--~~a~~~lg~l~~~ 435 (760)
..+-++.+...+.+.+.......+.-.. .+...+++++|.+.+..++..+.... ..++ ...|..+..+..+
T Consensus 150 ~~~lPets~rvyrRYLk~~P~~~eeyie------~L~~~d~~~eaa~~la~vln~d~f~s-k~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAPEAREEYIE------YLAKSDRLDEAAQRLATVLNQDEFVS-KKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred hCCChHHHHHHHHHHHhcCHHHHHHHHH------HHHhccchHHHHHHHHHhcCchhhhh-hcccchhhHHHHHHHHHHh
Confidence 4445567777888877765544333222 23345699999999998886543221 1111 1223333333322
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHER 511 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~~~a 511 (760)
.-+.-.. ..--+.++..+...++. +.+|..||..|.+.|.+++|...|++++..--. ...+
T Consensus 223 ~p~~~~s---------------lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 223 NPDKVQS---------------LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred Ccchhcc---------------cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHH
Confidence 2111111 11112347777777765 678999999999999999999999999875322 1111
Q ss_pred H-----HHHHHHHHHC-------------CCHHHHHHHHHHHHhhcC------------Ch-HHHHHHHHHHHcccCCCC
Q 004336 512 L-----VYEGWILYDT-------------SHCEEGLRKAEESIQMKR------------SF-EAFFLKAYALADSSQDSS 560 (760)
Q Consensus 512 ~-----~~Lg~i~~~~-------------g~~eeAl~~~~~al~l~p------------~~-~a~~~la~~l~~~~~~~~ 560 (760)
+ +.-..+...+ -+.+-.+..|+..+...| ++ +.|.....++..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~------ 361 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG------ 361 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC------
Confidence 1 1111111111 234555666777665443 33 333333222222
Q ss_pred cchhhhhHHHHHHhhhHhh---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCH
Q 004336 561 CSSTVVSLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNK 631 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~---l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~ 631 (760)
.....+.-+.+|++...-. -.+...|...|..|...|+.+.|...|+++.+.... .+|..-|..-.+..++
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~ 441 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENF 441 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhH
Confidence 2233334444444332211 112788999999999999999999999999985332 6888889989999999
Q ss_pred HHHHHHHHHHHHhccC------------cHHHHHHH----------HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 632 TTAYEEMTKLIKKARN------------NASAYEKR----------SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~------------~~~~~~~~----------~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
+.|...++++...-.+ ...++..+ ..+|-++.....|++.+.+.--.|....+.|..+
T Consensus 442 ~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL 521 (835)
T KOG2047|consen 442 EAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL 521 (835)
T ss_pred HHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999987643221 11111111 1246777778889999999888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCCC-cHHH-HHHHHHhh
Q 004336 690 MDSHKENEAIAELSRAIAFKADLH--LLH---LR-AAFHEHTGDVLGALRDCRAALSVDPN-DQEM-LELHSRVY 756 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~~p~~~--~~~---l~-a~~~~~~g~~~~A~~~~~~aL~l~P~-~~~~-l~~~~r~~ 756 (760)
....-+++|...|++.+.+.+-.. .+| +- ..-...--..+.|...|+++|+..|. +... .-+|+++.
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999998876544 444 22 22222325688999999999997762 3222 23455544
No 137
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.85 E-value=7.6e-06 Score=86.21 Aligned_cols=260 Identities=13% Similarity=0.052 Sum_probs=187.4
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.-|......|+|.+|...+ .+.-+..+.-...+..-+.+-.+.|+++.|-.++.++-+..++
T Consensus 89 ~egl~~l~eG~~~qAEkl~------------------~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~ 150 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLL------------------RRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD 150 (400)
T ss_pred HHHHHHHhcCcHHHHHHHH------------------HHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC
Confidence 3455566788999999888 6655555555666666777889999999999999999988544
Q ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH
Q 004336 508 -DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 586 (760)
Q Consensus 508 -~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~ 586 (760)
...+....+.++...|+++.|.....++++..|.+ ..++
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~----------------------------------------~~vl 190 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH----------------------------------------PEVL 190 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC----------------------------------------hHHH
Confidence 45677888999999999999999999999999999 6777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---cch-------HHHHHHHHHHHHcCCHHHHHHHHHH---HHHhccCcHHHHH
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKI---RHT-------RAHQGLARVHFLKNNKTTAYEEMTK---LIKKARNNASAYE 653 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~---~~~-------~a~~~La~~~~~~g~~~~A~~~l~~---al~~~~~~~~~~~ 653 (760)
.....+|...|+|.+......+.-+. ++. .++.++-+=....+..+.-..+++. .++.+|+....+.
T Consensus 191 rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 191 RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHH
Confidence 77788888888888888887776652 222 2222222111111222221223333 2333344433333
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHH
Q 004336 654 -KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 731 (760)
Q Consensus 654 -~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A 731 (760)
.+...|+.++|.+..+.+++..-+.. ....+ -..+-++...=++..++.++..|+++.+++- |.++.+.+.+.+|
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 34567999999999999998765433 22222 2345678888899999999999999988744 8888888999999
Q ss_pred HHHHHHHHhcCCCcHHH
Q 004336 732 LRDCRAALSVDPNDQEM 748 (760)
Q Consensus 732 ~~~~~~aL~l~P~~~~~ 748 (760)
..+++.+++..|+..+.
T Consensus 348 ~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 348 SEALEAALKLRPSASDY 364 (400)
T ss_pred HHHHHHHHhcCCChhhH
Confidence 99999999999986653
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=1.8e-08 Score=82.22 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcC
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 540 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p 540 (760)
+++..|+.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999988
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.82 E-value=1.9e-06 Score=88.99 Aligned_cols=234 Identities=13% Similarity=0.090 Sum_probs=171.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|.-++...++++|+..+.+.|..-.+. .++...+-.+..+...+|.+++++.+. +..+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---~~Rf~~lG~l~~a~s~~g~y~~mL~~a--------------~sqi 70 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---MGRFRVLGCLVTAHSEMGRYKEMLKFA--------------VSQI 70 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHhccchhhhhhhHHHHHHHHHH--------------HHHH
Confidence 34455666677779999999998888765333 244456666777788888888887765 3333
Q ss_pred HHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 465 YQMLESDA--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 465 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.-+.+.+. -..+++.+++..+.+..++.+++.+-+-.+.+.... ..++..+|.++.-++.++++++.|+++++
T Consensus 71 ~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 71 DTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44443332 234678888888888888888888877777654322 25667788888899999999999999987
Q ss_pred hcCCh-------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--------H------HHHHHHHHHHHHHc
Q 004336 538 MKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--------K------GQALNNLGSVYVDC 596 (760)
Q Consensus 538 l~p~~-------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--------~------~~a~~~Lg~~y~~~ 596 (760)
+..++ ..+..+|..+... ..+++|+-+..++.. . ..+++.++..+..+
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l-----------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~ 219 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQL-----------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL 219 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHH-----------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh
Confidence 63322 5667777777776 777777766665511 1 56788899999999
Q ss_pred CCHHHHHHHHHHHHhhc-----c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 597 GQLDLAADCYSNALKIR-----H---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 597 g~~~eA~~~~~~Al~~~-----~---~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
|..-.|.++.+++.++. . ......+|.+|...|+.+.|..-|+++.....
T Consensus 220 G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 220 GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 99999999999998841 1 15677889999999999999999998876654
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.80 E-value=9.7e-07 Score=90.91 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a---~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-------- 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--------
Confidence 45566666776677777777777777777666665433 3666666777777777777777777666666
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
. ....+++.+|.++...++- .+..-..+++ .......
T Consensus 103 ----------------~-------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~---------~~rD~~~ 139 (243)
T PRK10866 103 ----------------P-------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR---------SDRDPQH 139 (243)
T ss_pred ----------------C-------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc---------cccCHHH
Confidence 0 0045555555554332210 0111000000 0001122
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..+|+..+++.++..|+....-..... +..++. ....--...|..|.+.|++..|+.-++.++...|
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~r-------l~~l~~------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKR-------LVFLKD------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHH-------HHHHHH------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence 356788889999999976554433310 111111 1122234678899999999999999999999999
Q ss_pred CcHHH----HHHHHHHHHcCCHHHHHHHHHH
Q 004336 711 DLHLL----HLRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 711 ~~~~~----~l~a~~~~~~g~~~~A~~~~~~ 737 (760)
+.+.. .+....|..+|..++|......
T Consensus 207 ~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 207 DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 87633 3558888888999999886654
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.80 E-value=1.5e-07 Score=106.87 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=112.3
Q ss_pred HHHHHHHhhhHHHhcCC---HHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHH----HHHHHhhhccccc
Q 004336 382 RLLAFHQLGCVRLLRKE---YDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLYDRWSS 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~---~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~----A~~~l~l~~~~~~ 454 (760)
.|..++..|.-++.+++ +..|+.+|+++++++|++. .++-.++.++.....+.. .+.-.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a-------- 403 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAAL-------- 403 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHH--------
Confidence 45566777777776554 8899999999999999996 777777776644322211 01001
Q ss_pred cCCcCcHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 455 VDDIGSLSVIYQMLE--SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 455 ~~d~~sl~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
.....+++. .+|.++.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|
T Consensus 404 ------~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 404 ------STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ------HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112255555 3677888999999999999999999999999999999 4889999999999999999999999
Q ss_pred HHHHhhcCChHHHH
Q 004336 533 EESIQMKRSFEAFF 546 (760)
Q Consensus 533 ~~al~l~p~~~a~~ 546 (760)
++|+.++|.++.|+
T Consensus 477 ~~A~~L~P~~pt~~ 490 (517)
T PRK10153 477 STAFNLRPGENTLY 490 (517)
T ss_pred HHHHhcCCCCchHH
Confidence 99999999984443
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.78 E-value=4.2e-07 Score=91.24 Aligned_cols=188 Identities=20% Similarity=0.127 Sum_probs=117.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45667777777777777777777777777776643 4667777777777777777777777777777766
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
.. ...+++.+|.+++... ...+ ......+.
T Consensus 76 ----------------~~-------------~~~A~Y~~g~~~~~~~---------~~~~------------~~~~D~~~ 105 (203)
T PF13525_consen 76 ----------------PK-------------ADYALYMLGLSYYKQI---------PGIL------------RSDRDQTS 105 (203)
T ss_dssp ----------------TT-------------HHHHHHHHHHHHHHHH---------HHHH-------------TT---HH
T ss_pred ----------------cc-------------hhhHHHHHHHHHHHhC---------ccch------------hcccChHH
Confidence 00 0456666666554430 0000 11233445
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..+|+..++..+...|+...+-.... -+..++..+ ..--...|..|.+.|++..|+..++.+++..|
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~-------~l~~l~~~l------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKK-------RLAELRNRL------AEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 66889999999999997654443321 111111111 12335679999999999999999999999999
Q ss_pred CcHHHH----HHHHHHHHcCCHHHHH
Q 004336 711 DLHLLH----LRAAFHEHTGDVLGAL 732 (760)
Q Consensus 711 ~~~~~~----l~a~~~~~~g~~~~A~ 732 (760)
+..... +....+.++|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 987443 5588888889888544
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=5.3e-07 Score=95.43 Aligned_cols=172 Identities=17% Similarity=0.121 Sum_probs=114.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
|..|...|++++|...|.++....-.. +....| +..+...+.+|.+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~------------------------~~~~~A----------a~~~~~Aa~~~k~ 87 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKL------------------------GDKFEA----------AKAYEEAANCYKK 87 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHT------------------------T-HHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHc------------------------CCHHHH----------HHHHHHHHHHHHh
Confidence 667777888888888887776432111 111111 4566666777665
Q ss_pred cCCHHHHHHHHHHHHhh----c-ch---HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHH
Q 004336 596 CGQLDLAADCYSNALKI----R-HT---RAHQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRA 666 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~----~-~~---~a~~~La~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~ 666 (760)
. ++++|+.+|++|+.+ + +. ..+..+|.+|... |++++|++.|+++++.....+.....
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a------------ 154 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA------------ 154 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH------------
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH------------
Confidence 5 888888888888873 1 11 5677788888888 88888888888887766533221111
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-------LLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-------~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
...+..+|.++...|+|++|++.|+++....-++. ...+. ..++...||+..|...+++.
T Consensus 155 ------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 155 ------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp ------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13456779999999999999999999987543221 22244 66888889999999999999
Q ss_pred HhcCCCcH
Q 004336 739 LSVDPNDQ 746 (760)
Q Consensus 739 L~l~P~~~ 746 (760)
...+|...
T Consensus 223 ~~~~~~F~ 230 (282)
T PF14938_consen 223 CSQDPSFA 230 (282)
T ss_dssp GTTSTTST
T ss_pred HhhCCCCC
Confidence 99988543
No 144
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=7.4e-07 Score=89.77 Aligned_cols=268 Identities=16% Similarity=0.089 Sum_probs=161.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
...+|.+|++++..-.+.+|.+. .++..+|.+|...+++..|...+ ++.-.+.|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~r------AgLSlLgyCYY~~Q~f~~AA~CY------------------eQL~ql~P~~ 77 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSR------AGLSLLGYCYYRLQEFALAAECY------------------EQLGQLHPEL 77 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhChHH
Confidence 44588888888888888888775 78888999999988888888888 8888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC-h--HHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-F--EAFFLKAYA 551 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~-~--~a~~~la~~ 551 (760)
....+..+..+.+.+.+.+|++..........-.......-+.+.+..+++..+....++. |. + +...+.|-+
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchhe
Confidence 8888888888888888888887765543321111122333344445555555444333332 21 1 333334444
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cc----------
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKI---RH---------- 614 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---~~---------- 614 (760)
+... ++++.|.+.|+.+++- +-.-++++.+++..|+++.|+++..+.++. +|
T Consensus 154 lyke-----------gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 154 LYKE-----------GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred eecc-----------ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 4333 5555555555555332 445566777777777777777777666541 00
Q ss_pred ---------h---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CcHHHHHHHH---hcCCHHHHHHHHHHH
Q 004336 615 ---------T---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR--NNASAYEKRS---EYCDRELTRADLEMV 671 (760)
Q Consensus 615 ---------~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~--~~~~~~~~~~---~~~~~~~A~~~l~ka 671 (760)
+ .+++..+.++++.|+++.|.+.+...-.... -++.....++ .-+++-+....+.-.
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 0 3455556777788888777766654321111 0111111111 123444555556666
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
++++|--.+.+.++-.+|.+..-++-|.+.
T Consensus 303 L~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 303 LQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred HhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 777776666666666666666666655543
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.76 E-value=0.0001 Score=81.69 Aligned_cols=257 Identities=10% Similarity=-0.019 Sum_probs=177.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC-------
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------- 541 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~------- 541 (760)
.-..+|...|..|...|+.+.|...|+++.+.+-. -+.+|...|..-....+++.|+...+++...-..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 34678899999999999999999999999887532 2577888888888999999999999998764211
Q ss_pred -----------h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHH
Q 004336 542 -----------F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 542 -----------~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
. ..|..++...... |.++.....|.+.++- ++...|.|..+....-+++|.+.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~-----------gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESL-----------GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 2344455555554 7888888888888433 88889999999999999999999
Q ss_pred HHHHHhhcch----HHHHHH---HHHHHHcCCHHHHHHHHHHHHHhccCcH--HHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 606 YSNALKIRHT----RAHQGL---ARVHFLKNNKTTAYEEMTKLIKKARNNA--SAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 606 ~~~Al~~~~~----~a~~~L---a~~~~~~g~~~~A~~~l~~al~~~~~~~--~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
|++.+.+-+. +.|... ..--+..-+.+.|..+|+++++..|... .+|...+ ..|-...|+..|++|.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999885332 444332 2223334578889999999999888322 2222221 3466778888888876
Q ss_pred hhCCC-ChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 673 QLDPL-RVYPYRYR--AAVLMDSHKENEAIAELSRAIAFKADLHLLH--LR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 673 ~l~p~-~~~~~~~L--a~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..-+. +-...+++ ..+-.--| ...-.+.|++|++.-|+..... ++ +.+-.+.|..+.|...|.-.-++
T Consensus 614 ~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 614 SAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 54332 21111111 11111112 3345678889998888877554 55 77778889999999988877654
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=1.8e-07 Score=91.01 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
....++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.. ..+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3677899999999999999999999999988765 34589999999999999999999999999999998 6666665
Q ss_pred HHHHcc
Q 004336 550 YALADS 555 (760)
Q Consensus 550 ~~l~~~ 555 (760)
.++...
T Consensus 114 ~i~~~~ 119 (168)
T CHL00033 114 VICHYR 119 (168)
T ss_pred HHHHHh
Confidence 555443
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=1.5e-07 Score=99.32 Aligned_cols=132 Identities=16% Similarity=0.068 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHhccCcHHHHHHH----H
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVH--FLKN--NKTTAYEEMTKLIKKARNNASAYEKR----S 656 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~--~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~----~ 656 (760)
.....-.+|...++++.|.+.++.+-+.+.+.....++..+ ...| ++.+|...|+.+.+..+....+.+.. .
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33334556666666677766666666655554444444433 3333 46666666666655555444444332 2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHH
Q 004336 657 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE-NEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 657 ~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~-~eAi~~l~kal~~~p~~~~~~ 716 (760)
..|++++|...+.+++..+|+++.++.+++.+....|+. +.+.+++.+.....|+++.+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 346778888888888888999999999999999999988 566778888888899887553
No 148
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.75 E-value=3.4e-06 Score=87.27 Aligned_cols=264 Identities=17% Similarity=0.125 Sum_probs=181.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..+...+|.|++++..--..+....+..+.....+++..++..+....++.+++.+- ...+.
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~------------------k~~l~ 111 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYC------------------KTCLG 111 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------------------HHHhc
Confidence 334445558888776655444433222222233578888999998888888888876 33333
Q ss_pred hC---C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 470 SD---A--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 470 ~~---p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.. | .-......+|+++..++.++++++.|++|++...++. .++..||.++-...++++|+-+..++.++
T Consensus 112 lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 112 LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 32 1 2235667799999999999999999999998754432 46788999999999999999999999886
Q ss_pred cCCh-----------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--------H--HHHHHHHHHHHHHcC
Q 004336 539 KRSF-----------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--------K--GQALNNLGSVYVDCG 597 (760)
Q Consensus 539 ~p~~-----------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--------~--~~a~~~Lg~~y~~~g 597 (760)
-.+. .+.+.++..+..+ |.+-+|.++.+++.+ . +....-+|.+|...|
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~-----------G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLL-----------GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHh-----------cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc
Confidence 4322 3556677777776 777777776666622 1 566777899999999
Q ss_pred CHHHHHHHHHHHHhh----c----chHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhccCcHHHHHHHHhcCCHHHH
Q 004336 598 QLDLAADCYSNALKI----R----HTRAHQGLARVHFLKNNKTT-----AYEEMTKLIKKARNNASAYEKRSEYCDRELT 664 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~----~----~~~a~~~La~~~~~~g~~~~-----A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A 664 (760)
+.+.|..-|++|... + ...++.+.|++.....-..+ |++.-+++++.....+.-...+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl--------- 331 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL--------- 331 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH---------
Confidence 999999999999873 1 12566666766665544444 6666666666655443322222
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
..+..++.+|...|.-++-.+.+.++-
T Consensus 332 ---------------K~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 332 ---------------KLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred ---------------HHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 345667778878877777666666654
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=1.2e-07 Score=80.46 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
+++.+|..+...|++++|..++ .+++...|.+..+++.+|.++...|++++|++.+++++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677899999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.|.+...+..+|.++...|++++|...+++++...|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999988764
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=2.4e-07 Score=83.81 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.++..|..++..|++++|+..|++++..+|+++. ...+++.+|.++...|+++.|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~------------------ 62 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY---APNAHYWLGEAYYAQGKYADAAKAF------------------ 62 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHHHhhccHHHHHHHH------------------
Confidence 3455555555566666666666666666655420 0134444555555555555555555
Q ss_pred HHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 465 YQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 465 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
++++...|++ +.+++.+|.++...|++++|+..++++++..|++.
T Consensus 63 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 63 LAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4444444442 34455555555555555555555555555555443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=2.3e-07 Score=83.91 Aligned_cols=101 Identities=10% Similarity=-0.029 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
..++.+|..+...|++++|...+ .+++..+|++ ..+++.+|.++...|++++|+..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAF------------------QAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 67888999999999999999999 9999888876 57899999999999999999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++ +.++..+|.++...|++++|+..+++++...|++
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 99998875 6789999999999999999999999999999988
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.73 E-value=1.4e-07 Score=80.09 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHccc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 556 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~ 556 (760)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------------
Confidence 467889999999999999999999999999988899999999999999999999999999888877
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
..++..+|.++...|++++|...+.++++..|
T Consensus 68 --------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 68 --------------------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred --------------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 46777788888888888888888888877654
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=8.2e-07 Score=85.78 Aligned_cols=195 Identities=15% Similarity=0.088 Sum_probs=132.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+.++++++||.-+...|+++.|.+.|...++++|.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y----------- 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-----------
Confidence 456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHH-HHHHHcCCHH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLA-RVHFLKNNKT 632 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La-~~~~~~g~~~ 632 (760)
.-+..|.|..++--|+|.-|.+-+.+-..-+|.+.+..|= .+-...-++.
T Consensus 133 -----------------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 133 -----------------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred -----------------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 4566666777777777777777777766655542211111 1122344566
Q ss_pred HHHHHHHHHHHhccC--cHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 633 TAYEEMTKLIKKARN--NASAYEKRSEYCDRELTRADLEMVTQLDPL-------RVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 633 ~A~~~l~~al~~~~~--~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-------~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
+|...+.+-.+.... .++..... -.|+.. -...++++.+-..+ .+++|+++|..+...|+.++|...|+
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~-yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEF-YLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHH-HHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 665554443332221 12211111 011111 01112222222111 24678999999999999999999999
Q ss_pred HHHHcCC
Q 004336 704 RAIAFKA 710 (760)
Q Consensus 704 kal~~~p 710 (760)
-++..+-
T Consensus 262 LaiannV 268 (297)
T COG4785 262 LAVANNV 268 (297)
T ss_pred HHHHHhH
Confidence 9987653
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.71 E-value=5.1e-07 Score=88.14 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..+...|++++|+.+|+++++..|+... ...++..+|.++...|++++|+.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~------------ 95 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYY------------ 95 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 4567778888888888888888888888888888776641 2356777777887888888887777
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+++...|.+...+..+|.++...|+...|...+++++. .+++|++.+++++..
T Consensus 96 ------~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 96 ------HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred ------HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh
Confidence 777777777777777777777777777766665555542 268888999999998
Q ss_pred cCCh
Q 004336 539 KRSF 542 (760)
Q Consensus 539 ~p~~ 542 (760)
+|++
T Consensus 150 ~p~~ 153 (172)
T PRK02603 150 APNN 153 (172)
T ss_pred Cchh
Confidence 8887
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=3.5e-07 Score=89.35 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++ .++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4667789999999999999999999999999887653 4689999999999999999999999999999998 55555
Q ss_pred HHHHHHcc
Q 004336 548 KAYALADS 555 (760)
Q Consensus 548 la~~l~~~ 555 (760)
+|.++...
T Consensus 112 lg~~~~~~ 119 (172)
T PRK02603 112 IAVIYHKR 119 (172)
T ss_pred HHHHHHHc
Confidence 55544443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=8.3e-07 Score=84.04 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=108.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+...|......+..++...+...++.++...|+.+. ...+...+|.++...|++++|...+
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y---a~~A~l~lA~~~~~~g~~~~A~~~l---------------- 71 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY---AALAALQLAKAAYEQGDYDEAKAAL---------------- 71 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHCCCHHHHHHHH----------------
Confidence 444444444455677999999999999999998841 1367788999999999999999999
Q ss_pred HHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 463 ~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
+.++...|+. ..+.+++|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 72 --~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 --EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888877655 46888999999999999999999976 34445567788899999999999999999999874
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=6e-07 Score=97.35 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=111.8
Q ss_pred HHhhhHHHhcC---CHHHHHHHHHHHH---hhCCCCcchhchHHHHHHHHHHHHHc---c------CHHHHHHHHhhhcc
Q 004336 387 HQLGCVRLLRK---EYDEAEHLFEAIL---TLSPDYRMFEGRVAASQLHMLVREHI---D------NWTIADCWLQLYDR 451 (760)
Q Consensus 387 ~~lG~~~l~~g---~~~eA~~~~~~aL---~l~P~~~~~~~~~~a~~~lg~l~~~~---g------~~~~A~~~l~l~~~ 451 (760)
+..|...+.++ ..+.|..+|.+++ .++|++. .++-.++.++... | ...+|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~------- 325 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT------ECYCLLAECHMSLALHGKSELELAAQKALE------- 325 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH------HHHHHHHHHHHHHHHhcCCCchHHHHHHHH-------
Confidence 45555444433 5678999999999 9999995 8888888777543 1 1123333
Q ss_pred ccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
...++++++|.|+.++..+|.++.-.++++.|+..|++|+.++|+.+.+++..|++....|+.++|...
T Consensus 326 -----------~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 326 -----------LLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred -----------HHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCh
Q 004336 532 AEESIQMKRSF 542 (760)
Q Consensus 532 ~~~al~l~p~~ 542 (760)
++++++++|.-
T Consensus 395 i~~alrLsP~~ 405 (458)
T PRK11906 395 IDKSLQLEPRR 405 (458)
T ss_pred HHHHhccCchh
Confidence 99999999987
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=3.8e-07 Score=88.64 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
..++.+|.++...|++++|+.++ .+++...|+ .+.+++++|.++...|++++|+..+++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNY------------------YEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555 555544333 234566666666666666666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHH-------HCCCHH-------HHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASDHERLVYEGWILY-------DTSHCE-------EGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~~~a~~~Lg~i~~-------~~g~~e-------eAl~~~~~al~l~p~~ 542 (760)
++.+.|.....+.++|.++. ..|+++ +|+..|++++..+|..
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666666666666666666 555655 5555556666667754
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.6e-07 Score=93.64 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---HCEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g---~~eeAl~~~~~al~l~p 540 (760)
++..+..+|++++-|..||.+|+.+|++..|...|++++++.|++++++..+|.+++.+. ...++...+++++..+|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 477788888888889899999999999999999999998888888888888888877543 45688888888888888
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++ ..+...||..++..|+|.+|+..++..++..|+
T Consensus 225 ~~----------------------------------------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 225 AN----------------------------------------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 88 677778888888888888888888888886554
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.67 E-value=8.2e-07 Score=93.98 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA--S----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..-|..|...|++++|.+.|.++....- + -...+...+.++... ++++|+..|++++.+.-..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-------- 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-------- 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--------
Confidence 335568889999999999999999876531 1 123455556666555 8888888888887542222
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh----cch----HHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKI----RHT----RAHQGL 621 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~----~~~----~a~~~L 621 (760)
|.+..| +..+..+|.+|... |++++|+++|++|++. +.. ..+..+
T Consensus 108 ----------------G~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 108 ----------------GRFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp ----------------T-HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ----------------CcHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 333333 67888999999999 9999999999999984 211 678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNAS-AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
|.++...|+|++|++.|+++....-++.. -+... ..+...+.++...|+...|..
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~------------------------~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK------------------------EYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH------------------------HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH------------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988775432110 01111 223455778889999999999
Q ss_pred HHHHHHHcCCCcH---HHHHH---HHHHHH--cCCHHHHHHHHHHHHhcCCCcH
Q 004336 701 ELSRAIAFKADLH---LLHLR---AAFHEH--TGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 701 ~l~kal~~~p~~~---~~~l~---a~~~~~--~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
.+++.....|... ...+. -..+.. ...+.+|+..|.+.-.+||=..
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 9999998887543 22222 222222 2457788888887766665333
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=9.6e-08 Score=76.87 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+.+|..+...|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999986
No 162
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.8e-07 Score=95.80 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcch---------hchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMF---------EGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~---------~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
...|.-...-|+.+++.|+|..|...|++++..-+....+ ..+..++.+++.++.+++.|.+|+.+.
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c---- 280 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESC---- 280 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH----
Confidence 3445556677888888889999999999988765432211 122356777888888888888888888
Q ss_pred cccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH-H
Q 004336 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-L 529 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA-l 529 (760)
.++|..+|+|..++|+.|.++...|+++.|+..|++++++.|+|..+...+..+......+.+. .
T Consensus 281 --------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 281 --------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred --------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888777777666555544 5
Q ss_pred HHHHHHHhhc
Q 004336 530 RKAEESIQMK 539 (760)
Q Consensus 530 ~~~~~al~l~ 539 (760)
+.|.+++...
T Consensus 347 k~y~~mF~k~ 356 (397)
T KOG0543|consen 347 KMYANMFAKL 356 (397)
T ss_pred HHHHHHhhcc
Confidence 6677666543
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=1.7e-06 Score=81.96 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
........++...+...+++.++..|+. ..+.+.+|.+++..|++++|+..|++++...|+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------- 83 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------- 83 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------
Confidence 3334446888888888888888888887 456777889999999999999999999887655400
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~ 636 (760)
...+...++.++...|++++|+..++........ .++..+|.+|...|++++|+.
T Consensus 84 ------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 84 ------------------------KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0345666777777888888888777553221111 566677888888888888888
Q ss_pred HHHHHH
Q 004336 637 EMTKLI 642 (760)
Q Consensus 637 ~l~~al 642 (760)
.|++++
T Consensus 140 ~y~~Al 145 (145)
T PF09976_consen 140 AYQKAL 145 (145)
T ss_pred HHHHhC
Confidence 777653
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-06 Score=90.22 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
..++-+.-++.-|..+|++. +.|..||.+|...|++..|...| .+++++.|++++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A~~AY------------------~~A~rL~g~n~~~ 192 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDALLAY------------------RNALRLAGDNPEI 192 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHHHHHH------------------HHHHHhCCCCHHH
Confidence 45666777888899999996 99999999999999999999888 9999999999999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLN---CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g---~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+..+|.++..+. ...++...|++++..+|.+..+++.||..++.+|+|.+|+..++..++..|.+
T Consensus 193 ~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 193 LLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999999777643 45689999999999999999999999999999999999999999999988876
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.59 E-value=2.5e-07 Score=75.35 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 587 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~ 587 (760)
++..|..+|.+++..|++++|+..|+++++++|++ +.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----------------------------------------~~~~~ 41 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----------------------------------------AEAYY 41 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------------------------HHHHH
Confidence 56788888999999999999999999999888888 78888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 004336 588 NLGSVYVDCG-QLDLAADCYSNALKIRH 614 (760)
Q Consensus 588 ~Lg~~y~~~g-~~~eA~~~~~~Al~~~~ 614 (760)
++|.++...| ++++|+..|+++++++|
T Consensus 42 ~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 42 NLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 8888888888 68888888888888765
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.57 E-value=2e-07 Score=79.34 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=72.7
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 513 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~ 513 (760)
.|+++.|+.++ ++++..+|. +...++.+|.+|.+.|++++|+..+++ .+.+|.+...++
T Consensus 2 ~~~y~~Ai~~~------------------~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYY------------------EKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHH------------------HHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 58899999999 999999995 567788899999999999999999999 888888889999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.+|.++..+|++++|+..++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 167
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=4.5e-05 Score=86.14 Aligned_cols=285 Identities=16% Similarity=0.072 Sum_probs=173.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
.+.|..++|+.+|++.-. +-++..+|...|.|++|.++....++ -.
T Consensus 811 ieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DR--------------------iH 856 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDR--------------------IH 856 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhccc--------------------ee
Confidence 344488888888877632 33466778888888888877622222 01
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----------cHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLA----------RQHAAS----------DHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~ka----------l~~~p~----------~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
--..|++.|.-+...++.+.|+++|+++ +..+|. +...|...|.-+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 1346788888888888888888888865 233343 34556778888899999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+- -||.+..+..-+ |+.++|..+.++.-++ .+-+.+|..|...|++.+|+..|.+|-...
T Consensus 937 ~A~-------D~fs~VrI~C~q-----------Gk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 937 SAK-------DYFSMVRIKCIQ-----------GKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred Hhh-------hhhhheeeEeec-----------cCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 884 355555555555 7788888777766554 356678999999999999999998876521
Q ss_pred ch----------HHHHHH------------HHHHHHcC-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHH
Q 004336 614 HT----------RAHQGL------------ARVHFLKN-NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEM 670 (760)
Q Consensus 614 ~~----------~a~~~L------------a~~~~~~g-~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~k 670 (760)
+. +-+.++ |+.|...| ..+.|..+|.++=-+.. +.+.... .+.-.|++.+
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k----ALelAF~-tqQf~aL~lI-- 1070 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK----ALELAFR-TQQFSALDLI-- 1070 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH----HHHHHHh-hcccHHHHHH--
Confidence 11 222222 33333343 44444444443211110 0000000 0111222222
Q ss_pred HHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH------HHHc----------------CCC------cH-HHH---H
Q 004336 671 VTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSR------AIAF----------------KAD------LH-LLH---L 717 (760)
Q Consensus 671 al~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~k------al~~----------------~p~------~~-~~~---l 717 (760)
+-.++|+ ++.....-+..+....+|++|...+-. |+.+ .|. .. ..+ .
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 2234554 455566667777788888888876544 3322 111 11 111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 004336 718 RAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 718 ~a~~~~~~g~~~~A~~~~~~a 738 (760)
.+.+..++|.|..|.+-|.+|
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 278888889999998888776
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.56 E-value=0.00022 Score=70.29 Aligned_cols=200 Identities=22% Similarity=0.196 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.......+..+...+.+..+...+...+. ..+.....+...|..+...+++.+++..+.+++...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------
Confidence 45555556666666666666666666655 455555666666666666666666666666666554443
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhcc---h--HHHHHHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS-VYVDCGQLDLAADCYSNALKIRH---T--RAHQGLARVHF 626 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~-~y~~~g~~~eA~~~~~~Al~~~~---~--~a~~~La~~~~ 626 (760)
.......+. ++...|++++|...|.+++...+ . ......+..+.
T Consensus 129 ------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 129 ------------------------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178 (291)
T ss_pred ------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence 111111222 55566666666666666655333 1 22333333333
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
..++++.|+..+. +++...+. ....+..++..+...+++++|+..+.++
T Consensus 179 ~~~~~~~a~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 179 ALGRYEEALELLE------------------------------KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HhcCHHHHHHHHH------------------------------HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3444433333333 33333333 3444555555555555666666666666
Q ss_pred HHcCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 706 IAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 706 l~~~p~~~~-~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+...|.... ....+..+...|+++++...+.+++...|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 665555221 112222222445566666666666655554
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=3.6e-07 Score=77.71 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=68.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 487 RLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
.+|++++|+..++++++..|. +...++.+|.+++..|++++|+..+++ ...+|.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------------------- 57 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------------------- 57 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----------------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----------------------
Confidence 368999999999999999995 566788899999999999999999999 7777766
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
......+|.++...|++++|+..|+++
T Consensus 58 ------------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 ------------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566667788899999999999988875
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.54 E-value=0.00025 Score=70.00 Aligned_cols=226 Identities=22% Similarity=0.186 Sum_probs=173.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH--hCCC
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE--SDAP 473 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~--~~p~ 473 (760)
.+.+..+...+...+...+... ........+..+...+.+..+...+ ...+. ..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 93 (291)
T COG0457 36 LGELAEALELLEEALELLPNSD----LAGLLLLLALALLKLGRLEEALELL------------------EKALELELLPN 93 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcccc----chHHHHHHHHHHHHcccHHHHHHHH------------------HHHHhhhhccc
Confidence 3477788888888888877630 0266777888889999999998888 66665 6788
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhcCC-hHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW-ILYDTSHCEEGLRKAEESIQMKRS-FEAFFLKAYA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~-i~~~~g~~eeAl~~~~~al~l~p~-~~a~~~la~~ 551 (760)
....+...+..+...+++..++..+.+++...+.........+. ++...|++++|...+++++...|. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 164 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN--------- 164 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---------
Confidence 89999999999999999999999999999988877666666666 899999999999999999876663 1
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHc
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLK 628 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~ 628 (760)
.....+...+..+...+++++|+..+.+++...+. ..+..++..+...
T Consensus 165 -----------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 165 -----------------------------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred -----------------------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 00344555555588889999999999999986544 6788888888888
Q ss_pred CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 629 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+++..|...+..++...|. ....+..++..+...+.++++...+.+++..
T Consensus 216 ~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD------------------------------NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc------------------------------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8777777777766666664 3334445555555666677777777777777
Q ss_pred CCC
Q 004336 709 KAD 711 (760)
Q Consensus 709 ~p~ 711 (760)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 776
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.48 E-value=3.3e-06 Score=96.17 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhh--cCChHH
Q 004336 478 YFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------CEEGLRKAEESIQM--KRSFEA 544 (760)
Q Consensus 478 ~~~la~~~~~~g~---~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~--------~eeAl~~~~~al~l--~p~~~a 544 (760)
++..|..+...++ ..+|+.+|+++++++|+++.++..++.++..... ..++....++++.+ +|..
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~-- 419 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL-- 419 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC--
Confidence 3455666665544 7799999999999999999999988887755422 22333333333332 2222
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLAR 623 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~ 623 (760)
+.++..+|..+...|++++|...+++|+..+|. .++..+|.
T Consensus 420 --------------------------------------~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~ 461 (517)
T PRK10153 420 --------------------------------------PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGK 461 (517)
T ss_pred --------------------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888888999999999999999999887 78999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++...|++++|++.|++++.++|....
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999988888885543
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=3.3e-06 Score=87.72 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 474 KGVLYFRQSLLL-LRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 474 ~~~~~~~la~~~-~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
+...+|..|..+ ...|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|++++...|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 456778888765 66799999999999999999987 5789999999999999999999999999888876
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR 616 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~ 616 (760)
. ...++++.+|.++...|++++|...|+++++..|..
T Consensus 214 -----------------~-------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 214 -----------------P-------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred -----------------c-------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 0 016788888888988999999999999888876663
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.47 E-value=0.0015 Score=68.78 Aligned_cols=301 Identities=16% Similarity=0.006 Sum_probs=209.9
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+++..-...|.+....|+-..|.++-.+.-++-..+. ..-...+-+....-.|+++.|..-|
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~llssDq----epLIhlLeAQaal~eG~~~~Ar~kf-------------- 143 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQ----EPLIHLLEAQAALLEGDYEDARKKF-------------- 143 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHhcCchHHHHHHH--------------
Confidence 3444445567777888899999999888764443332 0123334456667789999998877
Q ss_pred HHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Q 004336 461 LSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM- 538 (760)
Q Consensus 461 l~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l- 538 (760)
+.++. +|+.-. .+..+-.--.+.|..+.|+.+-+++-...|.-+.++...-......|+++.|++..+.....
T Consensus 144 ----eAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 144 ----EAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred ----HHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 44443 333211 11122223456899999999999999999998888888778888999999999988776542
Q ss_pred --cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-
Q 004336 539 --KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT- 615 (760)
Q Consensus 539 --~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~- 615 (760)
.++. +-... +..+...+.... .-+...|.+.-.+++++.|.
T Consensus 219 vie~~~-aeR~r----------------------------------AvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 219 VIEKDV-AERSR----------------------------------AVLLTAKAMSLL-DADPASARDDALEANKLAPDL 262 (531)
T ss_pred hhchhh-HHHHH----------------------------------HHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc
Confidence 1211 11111 122222222222 23477788888888888777
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 616 -RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR--NNASAYEKRSEYCDREL-TRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 616 -~a~~~La~~~~~~g~~~~A~~~l~~al~~~~--~~~~~~~~~~~~~~~~~-A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
.+-.--++.+++.|+..++-..++.+.+..| .....|... ..|+... -.+...+...+.|++.+.....+..-..
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a-r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA-RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh-cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 5666678888999999999999998888877 344444333 3343221 2333445566789999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 004336 692 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHT-GDVLGALRDCRAALSV 741 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~-g~~~~A~~~~~~aL~l 741 (760)
-|++..|...-+.+....|....+.+.+.+-... ||..++...+-++++-
T Consensus 342 a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999888777777777765 9999999999999873
No 174
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=6.3e-05 Score=89.64 Aligned_cols=212 Identities=16% Similarity=0.066 Sum_probs=154.0
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASD----HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+...+.+.+..+|+.+..|.++-..+++.++.++|.+..++||.. ++.. ...|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 555667777777777777777777777777777777777777753 3322 23344444444444555555566666
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
|-+.... -.+|..|..+|...+++++|.++|+..++.-.
T Consensus 1523 Acqycd~-----------------------------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1523 ACQYCDA-----------------------------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHhcch-----------------------------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 6544322 35777788888888888888888888888433
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--HH----HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 615 --TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--AS----AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 615 --~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--~~----~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
..+|..+|..+.++++-++|...+.++++..|.. -. .......+|+.+.+...|+-.+..+|.....|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 2788888888888888888888888888888852 11 222234678889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 687 AVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
..-.+.|+.+-+...|++++.+.-..
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999875443
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=4.7e-05 Score=76.68 Aligned_cols=188 Identities=13% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+|.-|...+..|+|++|+..|+.+....|..+.. + .+...++..+.+.+++++|+..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~-qa~l~l~yA~Yk~~~y~~A~~~~---------------- 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--E-QAQLDLAYAYYKNGEYDLALAYI---------------- 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--H-HHHHHHHHHHHhcccHHHHHHHH----------------
Confidence 4557777888888889999999999999999988622 2 44555555555555555555555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HCCCHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--------DTSHCEEGLRKAEE 534 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~--------~~g~~eeAl~~~~~ 534 (760)
.+-+.+.|.++.+ ..+++..|.+++ ++....+|+..+++
T Consensus 95 --drFi~lyP~~~n~-------------------------------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 95 --DRFIRLYPTHPNA-------------------------------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred --HHHHHhCCCCCCh-------------------------------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 4444444433221 123333343333 23345678888888
Q ss_pred HHhhcCCh----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 535 SIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 535 al~l~p~~----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.+...|+. ++...+..+-... +.--..+|..|.+.|.+..|+.-++..+
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~L---------------------------A~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDAL---------------------------AGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99888887 2222222111111 4444567999999999999999999999
Q ss_pred hhcch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 611 KIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 611 ~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
+.-+. +++..+..+|...|-.++|.+.-.-+-...|+..
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 85333 8999999999999999888766554434444443
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=1.1e-06 Score=70.71 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.+|..+...|++++|+..+ ++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~------------------~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAF------------------EQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHH------------------HHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5788999999999999999 9999999999999999999999999999999999999999998
Q ss_pred cH
Q 004336 508 DH 509 (760)
Q Consensus 508 ~~ 509 (760)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 75
No 177
>PRK11906 transcriptional regulator; Provisional
Probab=98.41 E-value=2.2e-05 Score=85.37 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=113.2
Q ss_pred HHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 465 YQML---ESDAPKGVLYFRQSLLLLRL---------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 465 ~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
.+++ ..+|+.+.+|-.++.++... ....+|.+..++|++++|.++.++..+|.++...|+++.|+..|
T Consensus 282 ~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f 361 (458)
T PRK11906 282 DRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILF 361 (458)
T ss_pred HHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHH
Confidence 9999 99999999999999987754 34568888999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
++++.++|++ +.+++..|.+..-.|+.++|.+..+++++.
T Consensus 362 ~rA~~L~Pn~----------------------------------------A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 362 EQAKIHSTDI----------------------------------------ASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHhhcCCcc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999 899999999999999999999999999999
Q ss_pred cchHHHHH---HHH-HHHHcCCHHHHHHHHHH
Q 004336 613 RHTRAHQG---LAR-VHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 613 ~~~~a~~~---La~-~~~~~g~~~~A~~~l~~ 640 (760)
+|...-.. +-. .|+ ..-.++|+..|-+
T Consensus 402 sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99832222 222 333 3345566665543
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=8.4e-06 Score=73.86 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.++|.+|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~-------- 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL-------- 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------
Confidence 467888999999999999999999999875443 467888999999999999999999999888777300
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
...+...++.++...|++++|+..+-.++.
T Consensus 74 -----------------------------~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 -----------------------------NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -----------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 034445567777788888888888777664
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=5.5e-06 Score=90.41 Aligned_cols=114 Identities=20% Similarity=0.129 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.++++.|+.+|++..+.+|+. ...++.++...++..+|+.++ ++++..+|.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll------------------~~aL~~~p~d~ 234 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLL------------------NEALKENPQDS 234 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHH------------------HHHHHhCCCCH
Confidence 358999999999999988754 455888888899999999999 99999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
.++..++..+...++++.|++..+++.+..|++...|+.|+.+|...|++++|+..++..-
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999998887543
No 180
>PRK15331 chaperone protein SicA; Provisional
Probab=98.38 E-value=4.9e-06 Score=78.35 Aligned_cols=108 Identities=4% Similarity=-0.102 Sum_probs=96.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
..+....++.-+..|..|.-+...|++++|...|+-..-.+|.+++.+..||.++..+++|++|+..|..+..+++++
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-- 104 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-- 104 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--
Confidence 344455566778889999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+...+..|.+|+..|+.++|..+|+.++..
T Consensus 105 --------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 --------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 667788899999999999999999999873
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.37 E-value=8.9e-06 Score=84.49 Aligned_cols=101 Identities=7% Similarity=-0.038 Sum_probs=91.1
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 424 AASQLHMLVR-EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 424 ~a~~~lg~l~-~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...+..+..+ ...|+|++|+..| ++.+...|+. +.+++.+|.+|...|++++|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af------------------~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAF------------------QNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666654 5679999999999 9999999988 5899999999999999999999999
Q ss_pred HHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 500 LARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 500 kal~~~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++++..|+ .+++++.+|.++...|++++|...|+++++..|+.
T Consensus 205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99988776 57899999999999999999999999999999998
No 182
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.37 E-value=0.00089 Score=75.00 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHH------HHHhhC----CCCcchhchHHHHHHHHHHHHHccCHHH
Q 004336 372 LLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFE------AILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTI 441 (760)
Q Consensus 372 l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~------~aL~l~----P~~~~~~~~~~a~~~lg~l~~~~g~~~~ 441 (760)
+++......-+...|-..|.++-+..++++|+++|+ +++++. |... +..-...|.-+.+.|+++.
T Consensus 650 il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev-----v~lee~wg~hl~~~~q~da 724 (1636)
T KOG3616|consen 650 ILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV-----VKLEEAWGDHLEQIGQLDA 724 (1636)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH-----hhHHHHHhHHHHHHHhHHH
Confidence 334444445667778888999999999999999988 344432 3332 2233445777788899998
Q ss_pred HHHHH
Q 004336 442 ADCWL 446 (760)
Q Consensus 442 A~~~l 446 (760)
|+..+
T Consensus 725 ainhf 729 (1636)
T KOG3616|consen 725 AINHF 729 (1636)
T ss_pred HHHHH
Confidence 88877
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.1e-06 Score=91.00 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+.+++.++.++++|.+|+....++|..+|++....++ +.++..+|+++.|+..|+++++++|+|.++-.-+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34555666666666666666666666666665544444 555555566666666666666666665555443333
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0015 Score=75.39 Aligned_cols=226 Identities=14% Similarity=0.028 Sum_probs=155.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..+++..|.....++++..|+.. .+..+-|....++|+.++|...+ +..-...+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCCc
Confidence 34599999999999999999996 88888999999999999999888 4444455667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH--HHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL--KAYAL 552 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~--la~~l 552 (760)
-..+-.+-.+|.++|++++|..+|+++...+|+ -+.++.+=.+|.+.+.|.+=.+.--+..+..|....|+. ...++
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 777888889999999999999999999999999 777777778888888887666666666667777733333 33333
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c---chHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------GQALNNLGSVYVDCGQLDLAADCYSNALKI-R---HTRAHQGL 621 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-~---~~~a~~~L 621 (760)
......+.... --.+.-|.+..+..+.. +++. ..-.++..+|++++|.+.+..-+.. . +......-
T Consensus 156 qs~~~~~~~~~--~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 156 QSIFSENELLD--PILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HhccCCccccc--chhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 32211111111 01111222222222111 1221 2234566788999999999554442 1 11333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
...+...+++.+-.+...+++...+++
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 667778888888888888888888865
No 185
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=5.5e-06 Score=79.22 Aligned_cols=76 Identities=30% Similarity=0.309 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.|.+.|.+++++++++.|++...+++++.|.+..+..+ +.+|.++..+++|+..|+++++.+|...++.+...|+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 46677889999999999999999999999998877766 99999999999999999999999999888887777765
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00012 Score=82.86 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
|...|+.+.|.+..+-+- .. ..|-+++....+..+.+-|...+-.. ........++++.+..
T Consensus 738 yvtiG~MD~AfksI~~Ik----S~-------~vW~nmA~McVkT~RLDVAkVClGhm------~~aRgaRAlR~a~q~~- 799 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK----SD-------SVWDNMASMCVKTRRLDVAKVCLGHM------KNARGARALRRAQQNG- 799 (1416)
T ss_pred EEEeccHHHHHHHHHHHh----hh-------HHHHHHHHHhhhhccccHHHHhhhhh------hhhhhHHHHHHHHhCC-
Confidence 344569988866654331 12 56778888888888888887766111 1122233445554433
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
+ +.-...|.+..++|..++|...|++.-. +-.|-.+|...|++++|.+..+.--++.-. ..|++.|.-+
T Consensus 800 ~--e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-~Tyy~yA~~L 868 (1416)
T KOG3617|consen 800 E--EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-NTYYNYAKYL 868 (1416)
T ss_pred c--chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh-hhHHHHHHHH
Confidence 2 2333456677788888999988887543 345566777888888887766542222111 4566666666
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccH------------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------------------GQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------------------~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
... +..+.|+++|++.-.+ ...|...|..+...|+.+.|+.+|..
T Consensus 869 ear-----------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 869 EAR-----------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred Hhh-----------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 665 5666666666665221 34455555555566666666666655
Q ss_pred H
Q 004336 609 A 609 (760)
Q Consensus 609 A 609 (760)
|
T Consensus 938 A 938 (1416)
T KOG3617|consen 938 A 938 (1416)
T ss_pred h
Confidence 5
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.33 E-value=2.8e-07 Score=94.36 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=154.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
.-..|+-|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+...++..|...++.++.++..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------------
Confidence 45678999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHH--
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTT-- 633 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~-- 633 (760)
..+|...|......|+..+|.+-++.++++.|. +..-.++ ......+
T Consensus 165 -------------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a----~i~Sl~E~~ 215 (536)
T KOG4648|consen 165 -------------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA----RINSLRERK 215 (536)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH----HhcchHhhh
Confidence 667777788888888889999999999987776 2222222 2222111
Q ss_pred -----------HHHHHHHHH-HhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 634 -----------AYEEMTKLI-KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 634 -----------A~~~l~~al-~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.+-..+++ ...+. ...+..|.++.++.++..-...+..+...-.+ +..|.+..++++|+..
T Consensus 216 I~~KsT~G~~~A~Q~~~Q~l~~K~~G-----~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~ 289 (536)
T KOG4648|consen 216 IATKSTPGFTPARQGMIQILPIKKPG-----YKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIE 289 (536)
T ss_pred HHhhcCCCCCccccchhhhccccCcc-----hhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHH
Confidence 222122222 11111 11112233444555544444333333322222 6677777888889888
Q ss_pred HHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 702 LSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
..+++..+|.......+ +...--.|...++...++.++.+.|.+........|+.
T Consensus 290 ~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~ 345 (536)
T KOG4648|consen 290 EVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKD 345 (536)
T ss_pred HHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhc
Confidence 88888777665433322 33333336778888999999999998887777666654
No 188
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00018 Score=72.19 Aligned_cols=251 Identities=15% Similarity=0.020 Sum_probs=170.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
-++-.|+|.+++..-++.-... ...+...++...|..+|++..-+.-...+- .|...+...++..+..-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e-------- 85 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELE-------- 85 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCc--------
Confidence 3445788888887766654433 667788888899999998876655443332 12224444444444433
Q ss_pred hhhhHHHHHHhhhHhh----ccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDR----LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~----l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
+..++-+....+. ... ......-|.++...|++++|.+....... -++...-..++.+..+.+-|.+.
T Consensus 86 ---~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 ---SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---LEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred ---chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222221 111 23444557889999999999988876322 24444456677888899999999
Q ss_pred HHHHHHhcc-----CcHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 638 MTKLIKKAR-----NNASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 638 l~~al~~~~-----~~~~~~~~~~~~-~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
+++..+.+. ..+.+|...+.- +...+|.-.|+...+..|..+......|.+.+.+|++++|...++.++..+++
T Consensus 160 lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 160 LKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 999988876 245666665433 35788999999999888888899999999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCHHHH-HHHHHHHHhcCCCcHHHHHH
Q 004336 712 LHLLHLR-AAFHEHTGDVLGA-LRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~~~A-~~~~~~aL~l~P~~~~~l~~ 751 (760)
++..... ..+-...|...++ .+...+....+|+|+-+..+
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence 9877744 3333344665554 45566777788999866544
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.31 E-value=2.6e-06 Score=69.03 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=58.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
++..|++++|++.|++++..+|++.++++.+|.++...|++++|...+++++..+|++ ..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999999999998 5555444
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.29 E-value=1.7e-06 Score=88.76 Aligned_cols=230 Identities=10% Similarity=-0.042 Sum_probs=149.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+-..|+-|+.+|.|++|+.+|.+++..+|.++ -.+.+.+..|.+...+..|..-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC---------------- 154 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDC---------------- 154 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhH----------------
Confidence 33356678899999999999999999999999997 55667888888888888888777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..++.++.....+|.+.|.+-..+|...+|.+.++.++.+.|++.+..-.++.+. ...++ +-+.+..|.+
T Consensus 155 --~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~----~I~~KsT~G~ 224 (536)
T KOG4648|consen 155 --EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRER----KIATKSTPGF 224 (536)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhh----hHHhhcCCCC
Confidence 8888888888889999999999999999999999999999998766554443332 22222 1112222333
Q ss_pred -HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 543 -EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 543 -~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
++.......+... +++..-...+..+.++.++-+.... ...-.+ +..|.+.-+++.|+.-..+++.+++.
T Consensus 225 ~~A~Q~~~Q~l~~K--~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 225 TPARQGMIQILPIK--KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred Cccccchhhhcccc--CcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 3333333332111 0011111123444444444433111 111112 55667777788887777777766554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
....+.+.+-...|...++...++.++...|.
T Consensus 302 ~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 302 PDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred cccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence 44444455555566677777777777777663
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=98.29 E-value=9.5e-06 Score=76.44 Aligned_cols=99 Identities=11% Similarity=-0.052 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+.-...|..|.-++..|++++|...|+-+...+|.++ +-+..||.++...++|++|+..+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~------~Y~~GLaa~~Q~~k~y~~Ai~~Y-------------- 94 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP------DYTMGLAAVCQLKKQFQKACDLY-------------- 94 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3455666666666666666666666666666666664 55555666666666666666666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...+++++...+..|.+|+.+|+.+.|+.+|+.++.
T Consensus 95 ----~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 95 ----AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 555555566666666666666666666666666666655
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=1.7e-05 Score=71.95 Aligned_cols=97 Identities=20% Similarity=0.092 Sum_probs=65.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+++.+.++-..|+.++|+..|++++...+... .+..++..+|..+...|++++|+.++ +
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---~~~~a~i~lastlr~LG~~deA~~~L------------------~ 62 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGA---DRRRALIQLASTLRNLGRYDEALALL------------------E 62 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 44444455555588888888888877654432 11356677777777777777777777 6
Q ss_pred HHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 466 QMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 466 ~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
+.+...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 63 ~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 63 EALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766666 666666777777777777777777766553
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.25 E-value=0.00012 Score=69.49 Aligned_cols=127 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALK---IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD 660 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~---~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 660 (760)
+-.+.||..+.+.|++.+|...|++++. .+....+.++++..+..+++..|...++++.+..|.-
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------ 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc------------
Confidence 4567789999999999999999999998 2334788999999999999988888888777766511
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 661 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 661 ~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~a 738 (760)
..+.....+|.+|...|++.+|...|+.++...|+.....+-+..+.++|+.++|..-+..+
T Consensus 158 ----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 158 ----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred ----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 23344556678888888888888888888888888776555566666778777776655444
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.24 E-value=5.2e-06 Score=68.29 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 686 AAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 686 a~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
..+|...+++++|++.+++++..+|+++..+ ..|.++..+|++.+|++.++++++..|+++++..+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678888999999999999999999888777 458888888999999999999999999888887776655
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.22 E-value=0.00051 Score=69.35 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----HHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFF 546 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~a~~ 546 (760)
.+..+++.|...++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.+ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 4688899999999999999999999999999887 5666
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----------
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----------- 615 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----------- 615 (760)
..|.++...-.+.... +.-..+|+..|+..+..-|+
T Consensus 113 lkgLs~~~~i~~~~rD---------------------------------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 113 LKGLSYFFQIDDVTRD---------------------------------QSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHHhccCCccccC---------------------------------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 6666655441111111 11112233333333332221
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004336 616 --------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 687 (760)
Q Consensus 616 --------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~ 687 (760)
.--..+|+.|.+.|.+-.|+.-++.+++..|+..... +++..+..
T Consensus 160 ~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~---------------------------eaL~~l~e 212 (254)
T COG4105 160 VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR---------------------------EALARLEE 212 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH---------------------------HHHHHHHH
Confidence 1123467777888888777777777777666443332 34456677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
+|..+|-.++|...-.-.-...|+.+
T Consensus 213 aY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 213 AYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 88889988888876544444455554
No 196
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.22 E-value=0.00029 Score=84.20 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-cCChHHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l-~p~~~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
++-.+..+.|++.+..+|+..-.|..+-..+...++.++|.+.+++|+.. ++.-+
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe------------------------ 1493 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE------------------------ 1493 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh------------------------
Confidence 33444567788888899999999999999999999999999999999863 32220
Q ss_pred HHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 568 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 568 ~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+ .+..+|..+-++...-|.-+.-.+.|++|-+...+ .++..|..+|...+++++|.++|+..++...
T Consensus 1494 --e----------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1494 --E----------EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred --H----------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 0 01233433333444445667778899999987555 8999999999999999999999999999988
Q ss_pred CcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 004336 647 NNASAYEKRS----EYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A 719 (760)
Q Consensus 647 ~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a 719 (760)
+....|...+ ..++-++|...+.+|++--|. +.......|.+.++.|+.+.+...|+..+.-.|.-.++|.- .
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 6655554443 335567888999999999998 66777888999999999999999999999999999888844 5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 720 AFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..-.+.|+.+.+...|++++.+.=.-..+..+|++--+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 55666699999999999999887666666666666543
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=3.6e-05 Score=84.11 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
-.+....++++.|+.++ ++..+.+|+ +...++.++...++..+|++.+.+++..+|.+.
T Consensus 176 l~~l~~t~~~~~ai~ll------------------e~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~ 234 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELL------------------EKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS 234 (395)
T ss_pred HHHHhhcccHHHHHHHH------------------HHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 34445678899999999 888888775 566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
+.+...+..+...++++.|+...+++....|+. ...|..|
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~----------------------------------------f~~W~~L 274 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSE----------------------------------------FETWYQL 274 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----------------------------------------HHHHHHH
Confidence 999999999999999999999999999999999 7888999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~A 609 (760)
+.+|...|++++|+..++..
T Consensus 275 a~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 275 AECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHhcC
Confidence 99999999999998777644
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=4.8e-06 Score=67.45 Aligned_cols=64 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
..|++++|+..|++++...|++..+.+. +.++...|++++|...+++++..+|+++....++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4455555555555555555555544433 555555555555555555555555555544444443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.18 E-value=8e-06 Score=67.17 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=59.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..+|.+.+++++|++++++++..+|+++..+..+|.++..+|++++|+..++++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5688999999999999999999999999999999999999999999999999999999988
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=4.2e-05 Score=73.34 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..+-.-|.-++..|+|++|..-|..||..-|.... ..+.-.+.+.|.+...++.|+.|+.-.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dc------------- 157 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDC------------- 157 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHH-------------
Confidence 445666777899999999999999999999999998752 222234445566666666666666666
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.++++++|.+..++.+.|.+|.+...+++|++.|++.++.+|....+.-....
T Consensus 158 -----sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 158 -----SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred -----HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666555444433
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.0002 Score=68.01 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=115.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~-~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+.+...|. ..-.+++|..+.+.|++.+|...|++++. +..+++..+..+++..+..+++.+|...+++..+.+|..
T Consensus 80 ~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~- 157 (251)
T COG4700 80 TEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF- 157 (251)
T ss_pred HHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-
Confidence 444455554 35578899999999999999999999986 456788899999999999999999999999999988876
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLA 622 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La 622 (760)
+.++....+|..|...|++.+|...|+.++.-.|. .+....+
T Consensus 158 -------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~ 200 (251)
T COG4700 158 -------------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA 200 (251)
T ss_pred -------------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH
Confidence 11566677888999999999999999999987666 6667778
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~ 643 (760)
..+..+|+.++|...+..+.+
T Consensus 201 e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHH
Confidence 888899988888777765544
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=7.6e-06 Score=88.79 Aligned_cols=69 Identities=9% Similarity=-0.000 Sum_probs=66.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a---~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+|+++.+++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 569999999999999999999999999999999999999865 999999999999999999999999997
No 203
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.023 Score=61.72 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhhHHH-hcCCHHHHHHHHHHHHhhCCCCcch-hchHHHHHHHHHHHHHcc-CHH
Q 004336 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAILTLSPDYRMF-EGRVAASQLHMLVREHID-NWT 440 (760)
Q Consensus 364 ~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l-~~g~~~eA~~~~~~aL~l~P~~~~~-~~~~~a~~~lg~l~~~~g-~~~ 440 (760)
....-++..........-.|..+.++|.+++ ..++++.|...++++..+...-+.+ ..+..+..+++.++.+.. .+.
T Consensus 27 k~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~ 106 (629)
T KOG2300|consen 27 KCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFP 106 (629)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3444445544444444567788888888766 4789999999999998776544444 455688899999998887 677
Q ss_pred HHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 441 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSL 498 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l 498 (760)
.|...+ +++++..... ....+.++.++.-..++.-|++.+
T Consensus 107 ~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 107 PAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 787777 8888776544 345677888888888888888764
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.06 E-value=0.0027 Score=66.95 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=161.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+..-++..+..|+|++|.+-|+..+ .+|+.. .-.+..|-+-....|..+.|..|.
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtR-----llGLRgLyleAqr~GareaAr~yA----------------- 177 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAML-DDPETR-----LLGLRGLYLEAQRLGAREAARHYA----------------- 177 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHH-----HHhHHHHHHHHHhcccHHHHHHHH-----------------
Confidence 334444555566779999999888775 455553 233444445556788888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHH-----HHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AASDHER-----LVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~---~p~~~~a-----~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+.+-...|.-+.++...-......|+++.|++..+..... .++..+. +...+.. .-.-+...|.....++
T Consensus 178 -e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a 255 (531)
T COG3898 178 -ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEA 255 (531)
T ss_pred -HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHH
Confidence 8888888888888877777888889999998888766543 2332221 1111111 2234577888888888
Q ss_pred HhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 004336 536 IQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--- 611 (760)
Q Consensus 536 l~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--- 611 (760)
.++.|++ .+-..-+..+... +++.++-.+.+..++. .-+-.++..|....--+.+++-++++-+
T Consensus 256 ~KL~pdlvPaav~AAralf~d-----------~~~rKg~~ilE~aWK~-ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRD-----------GNLRKGSKILETAWKA-EPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred hhcCCccchHHHHHHHHHHhc-----------cchhhhhhHHHHHHhc-CCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 8888888 7777777777777 7777777777777553 1111233444444444445555554433
Q ss_pred --hcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----HHHhcCCHHHHHHHHHHHHhh
Q 004336 612 --IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----KRSEYCDRELTRADLEMVTQL 674 (760)
Q Consensus 612 --~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----~~~~~~~~~~A~~~l~kal~l 674 (760)
.++.+.....+.....-|++..|...-+.+....|....... .-...|+..+....+.+++.-
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 233377777778888888888888888777777774332211 112346777777777777653
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.03 E-value=0.00013 Score=67.36 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++..|...+..|+|++|++.|+.+....|..+. . ..+...++.++...+++++|+..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a-~qAqL~l~yayy~~~~y~~A~a~~---------------- 70 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--A-EQAQLDLAYAYYKQGDYEEAIAAY---------------- 70 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--c-HHHHHHHHHHHHHccCHHHHHHHH----------------
Confidence 345677777778888999999999999999998762 2 278889999999999999999999
Q ss_pred HHHHHHHhCCCcH---HHHHHHHHHHHHcCC
Q 004336 463 VIYQMLESDAPKG---VLYFRQSLLLLRLNC 490 (760)
Q Consensus 463 ~~~~al~~~p~~~---~~~~~la~~~~~~g~ 490 (760)
++-++++|.++ .+++..|.++.++..
T Consensus 71 --~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 71 --DRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred --HHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 99999998764 578888988887765
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=7.8e-06 Score=68.26 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA---A----SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~---p----~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|+-+.++.++|.+|..+|++++|+.+|++++++. + ....++.++|.++...|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999762 2 23567899999999999999999999999976
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.99 E-value=0.00017 Score=66.65 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCC
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHL----LHLRAAFHEHTGD---------------VLGALRDCRAALSVDP 743 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~----~~l~a~~~~~~g~---------------~~~A~~~~~~aL~l~P 743 (760)
..++.+|++.|++++|+..+++-++++|.++. ++++|..+..... ..+|...|++.+...|
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 34455555555555555555555555555441 1133444433333 6688888888888888
Q ss_pred CcHHHHHHHHH
Q 004336 744 NDQEMLELHSR 754 (760)
Q Consensus 744 ~~~~~l~~~~r 754 (760)
++.-+-+.-.|
T Consensus 131 ~S~ya~dA~~R 141 (142)
T PF13512_consen 131 NSEYAADARKR 141 (142)
T ss_pred CChhHHHHHhc
Confidence 88777666554
No 208
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=0.0001 Score=75.01 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcC
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 659 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 659 (760)
-.++.+.-++..|+|.+|.+.|..-++..|. .++++||.+++.+|++++|...|..+++.+|.
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 3677788888899999999999999886555 78899999999999998888888887777762
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.|.-+++++.+|.+..++|+.++|...|+++++..|+.+...
T Consensus 211 ---------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 211 ---------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ---------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 355667778889999999999999999999999888877554
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.97 E-value=0.00026 Score=63.34 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
+-..|..+.+.|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++..+-
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--------------- 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--------------- 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---------------
Confidence 34568889999999999999999999999999999999999999999999999999999875333
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++ ...+++...|.+|...|+-+.|..-|+.|-+++..
T Consensus 111 ---------tr------------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 111 ---------TR------------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred ---------ch------------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 00 00578888999999999999999999999886655
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=0.00017 Score=73.35 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=73.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
.|+.+.-++..|+|.+|...|..-++..|+.... ..+++.||.++..+|+++.|...| .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~---~nA~yWLGe~~y~qg~y~~Aa~~f------------------~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT---PNAYYWLGESLYAQGDYEDAAYIF------------------A 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc---chhHHHHHHHHHhcccchHHHHHH------------------H
Confidence 3444444555559999999999999999998522 367777777777777777777777 5
Q ss_pred HHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 466 QMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 466 ~al~~~p---~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
.++...| .-+++++.+|.+..++|+.++|-..|+++++..|+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5555444 3356677777777777777777777777777666655443
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.95 E-value=3.4e-05 Score=83.88 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=64.6
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++ .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~----------------------------------------a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP----------------------------------------D 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------------------------------------h
Confidence 468899999999999999999999999999999999998 3
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 584 ---QALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 584 ---~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+|+++|.+|..+|++++|+.++++|++..
T Consensus 110 eA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 110 EAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999864
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.0012 Score=71.25 Aligned_cols=327 Identities=14% Similarity=0.061 Sum_probs=188.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC-
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP- 473 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~- 473 (760)
...+...+..-.+.+.....+.+ .++.+.+..++..|++.+|...+..-..... .....-|.
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~------~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-----------~g~~~T~q~ 280 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSS------MALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-----------AGGTITPQL 280 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCc------HHHHHHHHHHHHhcchHHHHHHHHhcccccc-----------cCccccchh
Confidence 33466777777777777766665 7888889999999999999988721111000 00001111
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CC---------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 474 -KGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-H--------AA---------SDHERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 474 -~~~~~~~la~~~~~~g~~~~Ai~~l~kal~-~--------~p---------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
....|.++|-++++.|.|..+..+|.+|++ . .| ..-+.+|+.|..|...|+.-.|.+.|.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 234567788888888888888888888885 1 11 2346778888888888888888888888
Q ss_pred HHhhcCCh-HHHHHHHHHHHcccC----C-----CCcchh-----------------------------hhhHHHHHHhh
Q 004336 535 SIQMKRSF-EAFFLKAYALADSSQ----D-----SSCSST-----------------------------VVSLLEDALKC 575 (760)
Q Consensus 535 al~l~p~~-~a~~~la~~l~~~~~----~-----~~~~~~-----------------------------~~~~leeAl~~ 575 (760)
+......+ ..|.+++.+...... . +..+.. -.-.++-|.-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 88776666 777777655322110 0 000000 00001111111
Q ss_pred hHhh-----------------------------------------------------------ccH--HHHHHHHHHHHH
Q 004336 576 PSDR-----------------------------------------------------------LRK--GQALNNLGSVYV 594 (760)
Q Consensus 576 ~~~~-----------------------------------------------------------l~~--~~a~~~Lg~~y~ 594 (760)
...+ ++. ..++-+.+.+-.
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L 520 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL 520 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 1111 000 235556677778
Q ss_pred HcCCHHHHHHHHHHHHhhcch-HHHHHHH-----HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRHT-RAHQGLA-----RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADL 668 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~-~a~~~La-----~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l 668 (760)
..|+.-.|+..-++.+....- .++-.|| .++....+..+|...+.--+--+.+...-|+.. .++.+.+--+.+
T Consensus 521 ~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~-Df~~~~~~~e~l 599 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQE-DFDQWWKHTETL 599 (696)
T ss_pred HhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchh-hhhhhhcccccc
Confidence 889999999888888874333 4444444 444556666666666553221111111111111 000000000000
Q ss_pred HHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004336 669 EMVTQLDPL---------RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA--DLHLLH-LRAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 669 ~kal~l~p~---------~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p--~~~~~~-l~a~~~~~~g~~~~A~~~~~ 736 (760)
+.....+|. .....+++|.++.-+|++++|...+..|..+-+ .++.+. +.-.+-..+|+...|...++
T Consensus 600 ~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk 679 (696)
T KOG2471|consen 600 DPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLK 679 (696)
T ss_pred CCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 000001111 123568899999999999999999999988877 333444 44555667799999999888
Q ss_pred HHH
Q 004336 737 AAL 739 (760)
Q Consensus 737 ~aL 739 (760)
+.-
T Consensus 680 ~~~ 682 (696)
T KOG2471|consen 680 QCT 682 (696)
T ss_pred hcc
Confidence 753
No 213
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.012 Score=59.46 Aligned_cols=254 Identities=15% Similarity=0.072 Sum_probs=122.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
..+.++.+| .|..++..-++.-... .. ..-...+...|..+|++..-+.-+..
T Consensus 14 ~iRn~fY~G-------nyq~~ine~~~~~~~~-~~------~e~d~y~~raylAlg~~~~~~~eI~~------------- 66 (299)
T KOG3081|consen 14 NIRNYFYLG-------NYQQCINEAEKFSSSK-TD------VELDVYMYRAYLALGQYQIVISEIKE------------- 66 (299)
T ss_pred HHHHHHHhh-------HHHHHHHHHHhhcccc-ch------hHHHHHHHHHHHHccccccccccccc-------------
Confidence 344566666 8888777665553332 33 25556666777667766543332200
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.......+...++.....-++.+.-+..+.+.+.... .+.-.+..-|.++...|++++|+........+
T Consensus 67 --------~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l- 137 (299)
T KOG3081|consen 67 --------GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL- 137 (299)
T ss_pred --------ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-
Confidence 0011112222333333333333333333333332222 22233344456677777777777666653222
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh-
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI- 612 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~- 612 (760)
++...-..++... .+.+-|.+..+++ +.....+..|+..+.. .+++.+|.-+|+..-..
T Consensus 138 ---E~~Al~VqI~lk~-----------~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~ 203 (299)
T KOG3081|consen 138 ---EAAALNVQILLKM-----------HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT 203 (299)
T ss_pred ---HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc
Confidence 2222222222222 2222222222222 1112222223332222 23455666666655552
Q ss_pred cch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 613 RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 613 ~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
.|+ ..+.+.+.++..+|++ ++|...++.++..+++++..+.++-.+-..
T Consensus 204 ~~T~~llnG~Av~~l~~~~~------------------------------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRY------------------------------EEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred CCChHHHccHHHHHHHhcCH------------------------------HHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 222 5555666666666655 555555566666677777777777777777
Q ss_pred cCCHHHHHH-HHHHHHHcCCCcHHH
Q 004336 692 SHKENEAIA-ELSRAIAFKADLHLL 715 (760)
Q Consensus 692 ~g~~~eAi~-~l~kal~~~p~~~~~ 715 (760)
.|+..++.+ .+.+.....|.++..
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchHH
Confidence 787766654 445555666776644
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00043 Score=62.00 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHH
Q 004336 512 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 591 (760)
Q Consensus 512 ~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~ 591 (760)
+-..|..+...|+.+.|++.|.+++.+-|.. +.+|++.+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r----------------------------------------aSayNNRAQ 85 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER----------------------------------------ASAYNNRAQ 85 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc----------------------------------------hHhhccHHH
Confidence 3455778889999999999999999999988 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 592 VYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 592 ~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.+.-+|+.++|++-+++|+++..+ .++...|.+|..+|+-+.|...|+.+.+...
T Consensus 86 a~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 86 ALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999999996433 7889999999999999999999998877665
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.92 E-value=3.1e-05 Score=64.63 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
|+...++.++|.+|..+|++++|+..|++++++.... +.... ..+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~---------------------------~~a~~ 48 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL------GDDHP---------------------------DTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------TTHHH---------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------CCCCH---------------------------HHHHH
Confidence 4456789999999999999999999999999762111 00000 01678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+.++|.++...|++++|+++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.89 E-value=9.4e-05 Score=70.43 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=62.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC----------
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN----------CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH---------- 524 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g----------~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~---------- 524 (760)
+.....+|.+++.+++-|.++.++. -+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~ 94 (186)
T PF06552_consen 15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEE 94 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 7888899999999999999887763 45678888999999999999999999999987653
Q ss_pred -HHHHHHHHHHHHhhcCCh
Q 004336 525 -CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 525 -~eeAl~~~~~al~l~p~~ 542 (760)
|++|..+|+++...+|++
T Consensus 95 ~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 788899999999999999
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.89 E-value=0.0014 Score=71.58 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=97.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
+-.-..+..++.+-++.-++|++++|+.+++|..|+.- ......+|..+|+++++..... +.........
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~----- 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHH----- 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhcc-----
Confidence 33444567788888899999999999999999888752 2345678888888888654332 0000000000
Q ss_pred cchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHH
Q 004336 561 CSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
+..-+. ...+..+. ..+-..+|.+..+.|+.++|++.|+..++..|. .++.+|..++...+.+.++.
T Consensus 244 ------g~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 244 ------GHFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred ------cchhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 000000 00111111 455677999999999999999999999986544 68999999999999999988
Q ss_pred HHHHHH
Q 004336 636 EEMTKL 641 (760)
Q Consensus 636 ~~l~~a 641 (760)
..+.+.
T Consensus 316 ~lL~kY 321 (539)
T PF04184_consen 316 ALLAKY 321 (539)
T ss_pred HHHHHh
Confidence 888764
No 218
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.007 Score=70.17 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=73.6
Q ss_pred HccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004336 435 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 514 (760)
Q Consensus 435 ~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~ 514 (760)
..+++.+|.... .+.++..|+...+...-|..+.++|+.++|..+++..-...+++...+..
T Consensus 21 d~~qfkkal~~~------------------~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKL------------------GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred hhHHHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 346677777766 88888888888888888888888888888887777766667777788888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+-.+|.++|++++|...|++++..+|+.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCcH
Confidence 8888888888888888888888888876
No 219
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.78 E-value=2e-05 Score=88.93 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=55.6
Q ss_pred cceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEec----------CCCCCHHHHHHHHhccccCcc
Q 004336 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGSL 247 (760)
Q Consensus 180 ~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~----------~~~i~~~~~~~~~~~~yt~~~ 247 (760)
.+.||||.||++.|||||.+|++.|++||.+|-....-|....|-+. =..|.|.+++.|+.|+||..+
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 46899999999999999999999999999999765544443333332 127999999999999999976
No 220
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0036 Score=61.88 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-------HH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-------LR-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-------l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
...|..-...++|.+|+..|++.....-++..+. +. +.++...+|.-.+...+++-.+++|...+..
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 3345555667888899999888887666665332 33 6667776888888888888888888876653
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0057 Score=63.35 Aligned_cols=146 Identities=12% Similarity=-0.057 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 367 ~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
..+++..-.+....+.-...+.-..+.+.+|++.+|-...+++|...|.+. -++...-.++...|+...-...+
T Consensus 87 k~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~k~ai 160 (491)
T KOG2610|consen 87 KKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGKKNAI 160 (491)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhhhhHH
Confidence 344444444443333324455556677778899999999999999999995 55555556666667666555555
Q ss_pred hhhccccccCCcCcHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 447 QLYDRWSSVDDIGSLSVIYQMLES-DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 447 ~l~~~~~~~~d~~sl~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++.+-. +|+. ..+.-.++..+.+.|-|++|.+.-++++++++.+.-+...++.++...
T Consensus 161 ------------------~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~ 222 (491)
T KOG2610|consen 161 ------------------EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN 222 (491)
T ss_pred ------------------HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc
Confidence 666655 5554 445556777888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004336 523 SHCEEGLRKAEESI 536 (760)
Q Consensus 523 g~~eeAl~~~~~al 536 (760)
|++.++.+...+.-
T Consensus 223 ~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 223 GRHKEGKEFMYKTE 236 (491)
T ss_pred chhhhHHHHHHhcc
Confidence 99999988877654
No 222
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.61 E-value=0.00019 Score=74.60 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCcc--ceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIF 261 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~--~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~ 261 (760)
|.+.+++ +.|||+.++.-| .||+.||+|+|.|+.- ..+.++-...+....+.++.|.|+.+-+ |.++-+.++|-+
T Consensus 295 iql~~~~-RyP~hla~i~R~-eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARILRV-EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHHHHH-HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 4444444 499999999765 8999999999999652 2222221145677899999999999997 999999999999
Q ss_pred HhhhChH---hHHHHHHHHHHhhcCCHH---hHHHHHHHHHHhCchHHHHHHHHHHHhh
Q 004336 262 ANKFCCE---RLKDACDRKLASLVASRE---DAVELMGYAIEENSPVLAVSCLQVFLRE 314 (760)
Q Consensus 262 a~~~~~~---~~~~~c~~~l~~~~~~~~---~al~l~~~a~~~~~~~L~~~a~~~~l~~ 314 (760)
|+++-+. .|+.+-..-++... .+. +.+.+.+++-......|-.-+..+..++
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~-e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~h 429 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWL-ELIDMYGVLDILEYCWDLVACRLEQFAETHEARH 429 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHH-HHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9998765 26777766666544 233 3556666766666655544444444333
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.014 Score=58.22 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..|.+.+..|...++|++|...+.++.+-..++...+....++-..+.+......+.++..++
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~------------- 94 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY------------- 94 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------------
Confidence 3445666677777777889999999999999777666655555567777777777888888888777
Q ss_pred cHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHH
Q 004336 460 SLSVIYQMLESD-----APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 460 sl~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeA 528 (760)
+++.... |+.+..-...+--..+..++++|++.|++++.+-..+ .+.+...+.++....++++|
T Consensus 95 -----eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 95 -----EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred -----HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 5554432 3434334444444455566666666666665542221 12334445556666666666
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 529 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 529 l~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
-..+.+-....-.. ..+. .....+...-.+|+...+|..|..+|+.
T Consensus 170 a~a~lKe~~~~~~~-------~~y~---------------------------~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 170 ATAFLKEGVAADKC-------DAYN---------------------------SQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHhhhHHHHH-------hhcc---------------------------cHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 55554433211000 0000 1134455555667777788899888888
Q ss_pred HHhhcc----h--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 609 ALKIRH----T--RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 609 Al~~~~----~--~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
.-.+.. . .++.+|-.. +..|+.++..+.+.
T Consensus 216 ~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 216 CSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred hhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 666421 1 455555443 35566666555544
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.58 E-value=0.00063 Score=64.91 Aligned_cols=101 Identities=12% Similarity=-0.032 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH---HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW---TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~---~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
-|+.|.+.++.....+|.+. ++++.-|.++..+.++ .++..++ .+++..++.++.++|+.
T Consensus 6 ~FE~ark~aea~y~~nP~Da------dnL~~WG~ALLELAqfk~g~es~~mi-----------edAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDA------DNLTNWGGALLELAQFKQGPESKKMI-----------EDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHHS-HHHHHHHH-----------HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhCcHhH------HHHHHHHHHHHHHHhccCcchHHHHH-----------HHHHHHHHHHHhcCCch
Confidence 36789999999999999995 8888888887766555 3454444 22455679999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~-----------~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
.++++.+|++|...+. |++|..+|++|...+|++......|
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999887553 7888999999999999986554443
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00016 Score=53.09 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.+++.+|.+|.+.|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888887775
No 226
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.57 E-value=0.0068 Score=66.93 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRV-YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~-~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~ 736 (760)
|+...|++.+..|+...|... ....+||.++..-|..-+|-..+.+++.+....+..+ ..+..+..+.+.++|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 667788889999988888654 4578899999999999999999999999986666655 44888888899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHhh
Q 004336 737 AALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 737 ~aL~l~P~~~~~l~~~~r~~ 756 (760)
+|++++|++++.-+-+.++.
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHhcCCCChhhHHHHHHHH
Confidence 99999999999877666554
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0019 Score=64.76 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=116.9
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
..+.+..+++..|.|.-....+.++++.+|... ......+|.+.++.|+.+.|..+++.-++ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-----p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek------------~ 241 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-----PQLLSGLGRISMQIGDIKTAEKYFQDVEK------------V 241 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-----HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------H
Confidence 445566677788899999999999999996554 36667799999999999999999921111 1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..-+..-..+..+..+.+.+|.-++++..|...|.+.+..+|.++.+-.+.|.++...|+..+|++..+.+....|..
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 222223345566778889999999999999999999999999999999999999999999999999999999999976
No 228
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.56 E-value=8.9e-05 Score=64.43 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=70.6
Q ss_pred EEEEecCeEeehhHHHHh-cCCHHHHhhccCC---CCCCccceeEecCCCCCHHHHHHHHhcccc-CccCCCChhhHHHH
Q 004336 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la-~~s~yf~amf~~~---~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt-~~~~~~~~~~v~~l 258 (760)
|+|-|||+.|..-+..|. ....+|..||.+. .......++-| +=+|..++.|++|..+ |++..-+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999874 55566677777 5799999999999999 78862247789999
Q ss_pred HHHHhhhChHhH-HHHH
Q 004336 259 LIFANKFCCERL-KDAC 274 (760)
Q Consensus 259 l~~a~~~~~~~~-~~~c 274 (760)
+.-|..|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 8877
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.019 Score=57.83 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCc-----H-HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------------ASD-----H-ERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------------p~~-----~-~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
...|...-.++.++..+++|..-+...-+++ |+. + .....-|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3445555556677777777776665444333 211 1 11233466677788888887766655
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...-.+. -...... ...+..+..|++-+ ..+.+.+..++.-.|.|.-..+.+.+.++.+|+
T Consensus 149 ~~~V~~i------i~~~e~~----~~~ESsv~lW~KRl---------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e 209 (366)
T KOG2796|consen 149 KTVVSKI------LANLEQG----LAEESSIRLWRKRL---------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE 209 (366)
T ss_pred HHHHHHH------HHHHHhc----cchhhHHHHHHHHH---------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc
Confidence 4221100 0001110 00011111222111 667788888999999999999999999997755
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----cHH--HHHHH----HhcCCHHHHHHHHHHHHhhCCCChHHH
Q 004336 616 ---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----NAS--AYEKR----SEYCDRELTRADLEMVTQLDPLRVYPY 682 (760)
Q Consensus 616 ---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~----~~~--~~~~~----~~~~~~~~A~~~l~kal~l~p~~~~~~ 682 (760)
.....||++..+.||.+.|..++++.-+.... ... ..... -..+++..|...+.+.+..||.++.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 67788999999999999999999965543331 111 11111 123678888888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
++.|.+++-.|+..+|++.++.++...|...
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999888765
No 230
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.47 E-value=0.015 Score=65.69 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.2
Q ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 713 HLLHLR-AAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 713 ~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
+..+++ +.++...|++++|-+.|-.+++++.-|
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 344555 777777799999999999999876544
No 231
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.07 Score=53.01 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----C-Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHA----A-SD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~----p-~~-~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.-|+.|.-.+++..|=..|-++-+.. . .+ +..+..-+.+| +.++.++|+..+++++++..+-
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~----------- 106 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM----------- 106 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh-----------
Confidence 33555555666666666665554432 1 11 22333334443 4458888888888887653332
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch--------HHHHHHHHH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARV 624 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~--------~a~~~La~~ 624 (760)
|++..| +.-+..+|.+|... .++++|+.+|+++-+.-.. ..+...+..
T Consensus 107 -------------Grf~~a----------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 107 -------------GRFTMA----------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred -------------hHHHHH----------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 333222 45566788888765 8999999999999873111 455666777
Q ss_pred HHHcCCHHHHHHHHHHHHHhccC
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
....++|.+|++.|+++....-+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888888887665543
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.39 E-value=0.0087 Score=64.65 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhc-CCh-HH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYD---TSHCEEGLRKAEESIQMK-RSF-EA 544 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~----~p~~~~a~~~Lg~i~~~---~g~~eeAl~~~~~al~l~-p~~-~a 544 (760)
.++...++-..|....+|+.-++..+..-.+ -++.+.+.+.+|.++.. .|+.++|+..+..++... +.+ +.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456667777899999999999988877666 45567788899999999 999999999999966544 333 77
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLAR 623 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~ 623 (760)
+...|.+|.+... . .-+......++|+.+|.++.+.+++ ..-.|++.
T Consensus 220 ~gL~GRIyKD~~~------------------------------~--s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At 267 (374)
T PF13281_consen 220 LGLLGRIYKDLFL------------------------------E--SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT 267 (374)
T ss_pred HHHHHHHHHHHHH------------------------------H--cCccchHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 8888888777400 0 0011222389999999999999877 77788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
++...|...+....++++.-.. ..+ .-++-..-.-.+...+-.++.+..-.|++++|+..++
T Consensus 268 LL~~~g~~~~~~~el~~i~~~l-------~~l-----------lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 268 LLMLAGHDFETSEELRKIGVKL-------SSL-----------LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHHcCCcccchHHHHHHHHHH-------HHH-----------HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887655554444432100 000 0001111112233444566777777889999999999
Q ss_pred HHHHcCCCcHH
Q 004336 704 RAIAFKADLHL 714 (760)
Q Consensus 704 kal~~~p~~~~ 714 (760)
+++...|..-.
T Consensus 330 ~~~~l~~~~W~ 340 (374)
T PF13281_consen 330 KAFKLKPPAWE 340 (374)
T ss_pred HHhhcCCcchh
Confidence 99888766543
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.39 E-value=0.00017 Score=49.61 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 498 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 498 l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
No 234
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00094 Score=66.73 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=81.3
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCCC-CCc-cceeEecCCCCCHHHHHHHHhccccCccCCC--ChhhHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-ESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGV--TPNLLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~-e~~-~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~--~~~~v~~ll 259 (760)
|.|-|||..|.-.+.-|--..-+|++||.+++. +.. ...|-| +=||.-+..|++|...|.+. + +...+.||+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 568899999999999999999999999999873 332 345777 56999999999999988885 5 556777999
Q ss_pred HHHhhhChHhHHHHHHHHHHhhc
Q 004336 260 IFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 260 ~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
.=|..|.+++|++.|..-+....
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999887654
No 235
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.33 E-value=0.56 Score=55.36 Aligned_cols=140 Identities=20% Similarity=0.123 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhhHHH-hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCC
Q 004336 379 DRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l-~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d 457 (760)
....+..++++|.+++ ...++++|+.++++++.+...+.....+..+...++.++.+.+... |...+
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l----------- 122 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL----------- 122 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH-----------
Confidence 5567888999999998 6799999999999998887665444455677788888988888777 88888
Q ss_pred cCcHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHHH----HHHHHHHHHHCCCH
Q 004336 458 IGSLSVIYQMLESDAP---K-GVLYFRQ--SLLLLRLNCPEAAMRSLQLARQHA--ASDHER----LVYEGWILYDTSHC 525 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~Ai~~l~kal~~~--p~~~~a----~~~Lg~i~~~~g~~ 525 (760)
.+.++.... . ..-.+++ ...+...+++..|++.++...... ..++.+ ....+.++...+..
T Consensus 123 -------~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 123 -------DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -------HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 666654433 2 1222222 223333489999999999988765 344443 33447777888888
Q ss_pred HHHHHHHHHHHh
Q 004336 526 EEGLRKAEESIQ 537 (760)
Q Consensus 526 eeAl~~~~~al~ 537 (760)
+++++..+++..
T Consensus 196 ~d~~~~l~~~~~ 207 (608)
T PF10345_consen 196 DDVLELLQRAIA 207 (608)
T ss_pred hhHHHHHHHHHH
Confidence 889888888743
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0029 Score=62.69 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+-..|.-++..++|..|+..|.+++.++|..+ ..+.+.+.++.+..+|+.+..-.
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~------~Y~tnralchlk~~~~~~v~~dc------------------ 67 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA------SYYTNRALCHLKLKHWEPVEEDC------------------ 67 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcc------hhhhhHHHHHHHhhhhhhhhhhH------------------
Confidence 344557778888899999999999999999985 56666788888888888877766
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.++++++|+....++.+|..+.....+++|+..++++..+
T Consensus 68 rralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 68 RRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888654
No 237
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0025 Score=63.33 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhC--------CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcccccc
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLS--------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 455 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~--------P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~ 455 (760)
.++++-|+-++..|+|.+|...|+.|+..- |..+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-------------------------------------- 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-------------------------------------- 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh--------------------------------------
Confidence 456777888888889999999999887542 3321
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+.++++.....++.+++.+++..|+|-++++.....+...|.+..+++..|.++...-+..+|...+.++
T Consensus 221 ----------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 221 ----------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred ----------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2223333445677788888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcCCh
Q 004336 536 IQMKRSF 542 (760)
Q Consensus 536 l~l~p~~ 542 (760)
++++|..
T Consensus 291 L~ldpsl 297 (329)
T KOG0545|consen 291 LELDPSL 297 (329)
T ss_pred HhcChhh
Confidence 8888876
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.064 Score=58.07 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLR---LNCPEAAMR 496 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~Ai~ 496 (760)
+....+=..|...++|+.=+.+. +.+-.. -++...+.+.+|.++.+ .|+.++|+.
T Consensus 142 div~~lllSyRdiqdydamI~Lv------------------e~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~ 203 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLV------------------ETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQ 203 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHH------------------HHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHH
Confidence 44555666677888888777776 333333 35567788899999999 999999999
Q ss_pred HHHH-HHHhCCCcHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 497 SLQL-ARQHAASDHERLVYEGWILYD---------TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 497 ~l~k-al~~~p~~~~a~~~Lg~i~~~---------~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
.+.. .....+.+++.+..+|.+|-+ ....++|+.+|.++.+++|+.-.-.+++.++...
T Consensus 204 il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 204 ILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 9999 445567889999999999864 3358899999999999998774444555555444
No 239
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.28 E-value=0.00067 Score=56.75 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=63.0
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCC--CCccceeEecCCCCCHHHHHHHHhcc-----ccCc------cCC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~--e~~~~~v~~~~~~i~~~~~~~~~~~~-----yt~~------~~~ 249 (760)
|.|+- +|.+|-.-| -+|--|.-.||||.|... |...++|.|+ +|....|+.+.+|. ||+. .+
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 55654 456676644 457779999999997654 5556799998 79999999999885 7877 23
Q ss_pred CChhhHHHHHHHHhhhCh
Q 004336 250 VTPNLLLEILIFANKFCC 267 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~ 267 (760)
|+++.++|||.+||.+.|
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 899999999999998754
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.031 Score=58.08 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=122.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCcH-------HHHHHHHhc
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNA-------SAYEKRSEY 658 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~-~~~~~-------~~~~~~~~~ 658 (760)
-+.+....|++.+|...+++.++-.|+ -++..--.+++..|+...-...+++++.. +++.+ .....+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 355667789999999999999997777 45566677888999999999999998887 44331 122234466
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHcCCHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-----LLHLRAAFHEHTGDVLGALR 733 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-----~~~l~a~~~~~~g~~~~A~~ 733 (760)
|-+++|.+.-+++++++|.+..+....+.++...|++.++.+...+--..=.+.. .++.-+.++...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8899999999999999999999999999999999999999998876533211111 23344888888899999999
Q ss_pred HHHHHH--hcCCCcHHH
Q 004336 734 DCRAAL--SVDPNDQEM 748 (760)
Q Consensus 734 ~~~~aL--~l~P~~~~~ 748 (760)
.|.+-+ ++..++..+
T Consensus 269 IyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHhhccchhh
Confidence 998654 345555533
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00038 Score=47.89 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.20 E-value=0.21 Score=54.35 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHH--HHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIR------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNAS--AYE 653 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~------~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~--~~~ 653 (760)
...+...+.+..+.|+++.|...+.++...+ .+.+.+..+.+....|+..+|+..++..+.... .... ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 7789999999999999999999999998865 457888899999999999999999999888322 1100 000
Q ss_pred HHHhcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHH
Q 004336 654 KRSEYCDRE--LTRADLEMVTQLDPLRVYPYRYRAAVLMDS------HKENEAIAELSRAIAFKADLHLLHLR-AAFHEH 724 (760)
Q Consensus 654 ~~~~~~~~~--~A~~~l~kal~l~p~~~~~~~~La~~~~~~------g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~ 724 (760)
.. ..+... .....-............++..+|...... +..++++..|.+++...|+....+.. +.++..
T Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 EL-KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HH-hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 000000 000000000000011134556667766666 88999999999999999988765522 222222
Q ss_pred c----C-------------CHHHHHHHHHHHHhcCCC
Q 004336 725 T----G-------------DVLGALRDCRAALSVDPN 744 (760)
Q Consensus 725 ~----g-------------~~~~A~~~~~~aL~l~P~ 744 (760)
. . -...|+..|-+++..+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 305 LLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 1 124588899999999988
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.20 E-value=0.00049 Score=74.78 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~ 737 (760)
+.++.|+..|.+|++++|+++..+.+++.++.+.+++..|+..+.+|++..|.....+++ |.+....+++.+|...|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 456666666666667777666666666777777777777777777777777666655533 6666666777777777777
Q ss_pred HHhcCCCcHHHHHHH
Q 004336 738 ALSVDPNDQEMLELH 752 (760)
Q Consensus 738 aL~l~P~~~~~l~~~ 752 (760)
...+.|+++.+...+
T Consensus 98 ~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKI 112 (476)
T ss_pred hhhcCcCcHHHHHHH
Confidence 777777777665544
No 244
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.53 Score=51.63 Aligned_cols=342 Identities=13% Similarity=0.015 Sum_probs=200.3
Q ss_pred HHHHHhhhHHHhcC--CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH-HHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 384 LAFHQLGCVRLLRK--EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML-VREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 384 ~a~~~lG~~~l~~g--~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~-l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.++..++.-+...| +...++++++..+...|.+. .++.....+|. ++....+.+.|...+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~---veart~LqLg~lL~~yT~N~elAksHL-------------- 70 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL---VEARTHLQLGALLLRYTKNVELAKSHL-------------- 70 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHHhccHHHHHHHH--------------
Confidence 33444444444555 78899999999998887764 22334444554 556788999999988
Q ss_pred HHHHHHHHHhC---CC----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHH
Q 004336 461 LSVIYQMLESD---AP----KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 461 l~~~~~al~~~---p~----~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~----~a~~~Lg~i~~~~g~~eeA 528 (760)
+++.... |. ..+++..++.+|.... .+..|...+++++++..+.+ ...+.|++++....++..|
T Consensus 71 ----ekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA 146 (629)
T KOG2300|consen 71 ----EKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSA 146 (629)
T ss_pred ----HHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhH
Confidence 5555443 33 3456677888888877 88899999999999987765 3456789999999999999
Q ss_pred HHHHHHHHhh-cCChHHHHHHHHH--------------------------HHcccCCC---------------------C
Q 004336 529 LRKAEESIQM-KRSFEAFFLKAYA--------------------------LADSSQDS---------------------S 560 (760)
Q Consensus 529 l~~~~~al~l-~p~~~a~~~la~~--------------------------l~~~~~~~---------------------~ 560 (760)
++.+.-.... ++-...|+..... ......++ +
T Consensus 147 ~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 147 LELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred HHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8874332211 1111222222111 11110010 0
Q ss_pred c---chhhhhHHHHHHhhhHhh---cc------H-HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 004336 561 C---SSTVVSLLEDALKCPSDR---LR------K-GQ-------------ALNNLGSVYVDCGQLDLAADCYSNALKI-- 612 (760)
Q Consensus 561 ~---~~~~~~~leeAl~~~~~~---l~------~-~~-------------a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-- 612 (760)
. ......++.+.+...... .. + +. ++..--.--.-.|-+++|.++-++++..
T Consensus 227 q~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e 306 (629)
T KOG2300|consen 227 QVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE 306 (629)
T ss_pred chhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 0 001111111111111110 00 0 00 1111111112346677777777777762
Q ss_pred ----cc-h---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccC-------cHHHHHHHHhc----CCHHHH
Q 004336 613 ----RH-T---------RAHQGLARVHFLKNNKTTAYEEMTKLIKK---ARN-------NASAYEKRSEY----CDRELT 664 (760)
Q Consensus 613 ----~~-~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~---~~~-------~~~~~~~~~~~----~~~~~A 664 (760)
.+ . ..+-.++.+-.-.|++.+|++....+.+- .|. .+.+...++.| +.++.|
T Consensus 307 klkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enA 386 (629)
T KOG2300|consen 307 KLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENA 386 (629)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHH
Confidence 11 0 34455677778889999998887776553 332 12223333333 578999
Q ss_pred HHHHHHHHhhCCC-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----------HHHHHHHHHHHcCCHHH
Q 004336 665 RADLEMVTQLDPL-R--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-----------LLHLRAAFHEHTGDVLG 730 (760)
Q Consensus 665 ~~~l~kal~l~p~-~--~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-----------~~~l~a~~~~~~g~~~~ 730 (760)
...|..|.++-.. + +....++|.+|.+.|+-+.-.+.++. +.|.+. ..+..|.+....+++.+
T Consensus 387 e~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE 463 (629)
T KOG2300|consen 387 EFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE 463 (629)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998876432 2 34456789999998876554444443 344421 12244777777899999
Q ss_pred HHHHHHHHHhcCCCcHHHHH
Q 004336 731 ALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~~~l~ 750 (760)
|.....+.|+.. +..+..+
T Consensus 464 aK~~l~e~Lkma-naed~~r 482 (629)
T KOG2300|consen 464 AKRFLRETLKMA-NAEDLNR 482 (629)
T ss_pred HHHHHHHHHhhc-chhhHHH
Confidence 999999999987 5555443
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.17 E-value=0.00074 Score=49.50 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
+.++..+|.+|...|++++|++.|+++++.+|++ +++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999 88888764
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.11 E-value=0.022 Score=62.51 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=111.0
Q ss_pred HHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC
Q 004336 520 YDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 598 (760)
Q Consensus 520 ~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~ 598 (760)
-+..+.+.-++..++|++++|+. .+|..++.-... ...++.+.++++++-++..+.........|.
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~-------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEAS-------------TIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc-------------CHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 45678888899999999999999 888777643222 2344555555444333322222111112221
Q ss_pred HHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004336 599 LDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~ 677 (760)
.-++. ..+ ..++- .+...+|.+..+.|+.++|++.++.+++..|...
T Consensus 246 ~~e~~--~~R--dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~---------------------------- 293 (539)
T PF04184_consen 246 FWEAW--HRR--DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD---------------------------- 293 (539)
T ss_pred hhhhh--hcc--ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----------------------------
Confidence 11110 000 01111 6677899999999999999998888887776321
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHH-H-cCC---------------HHHHHHHHHHHH
Q 004336 678 RVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLHLRAAFHE-H-TGD---------------VLGALRDCRAAL 739 (760)
Q Consensus 678 ~~~~~~~La~~~~~~g~~~eAi~~l~kal~~-~p~~~~~~l~a~~~~-~-~g~---------------~~~A~~~~~~aL 739 (760)
+..+..+|..++...+.|.++...+.+-=+. -|....+.+.+.++. + .|+ -..|.+...+|.
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHH
Confidence 2234566778888888888888887774322 244444433322211 1 111 245778899999
Q ss_pred hcCCCcHHHHH
Q 004336 740 SVDPNDQEMLE 750 (760)
Q Consensus 740 ~l~P~~~~~l~ 750 (760)
+.+|..+.-+-
T Consensus 374 efNPHVp~YLL 384 (539)
T PF04184_consen 374 EFNPHVPKYLL 384 (539)
T ss_pred HhCCCCchhhh
Confidence 99998887543
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.08 E-value=0.0013 Score=45.11 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0033 Score=62.32 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCC
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 559 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~ 559 (760)
..|+.++...+|+.|+..|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~----------------- 77 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL----------------- 77 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-----------------
Confidence 346667777889999999999999999999999999999999999999999999999999888
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+.+.+|........|++|+..+++|..
T Consensus 78 -----------------------vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 78 -----------------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred -----------------------HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 67778888888888888888888888865
No 249
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.003 Score=68.35 Aligned_cols=240 Identities=14% Similarity=0.103 Sum_probs=140.9
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC------
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD------ 456 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~------ 456 (760)
-..+|..|.+++....+.+|++........-........ ...-...-.++....+.++|+.++.......+..
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a-a~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA-ASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 345677777777777888888877765543211110000 0122233445555666677776652211100000
Q ss_pred -CcC--------cHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 457 -DIG--------SLSVIYQ-MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 457 -d~~--------sl~~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+. +-...++ .+..++ ...+....-..|....+...+..-.+.+.....+.+.++...++.++..|++.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~-k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADL-KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred cccchhhhcccCCcchhcccchhhcc-chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 000 0000000 000001 11122222234556666777777777777777777888888888888888888
Q ss_pred HHHHHHHHH-HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004336 527 EGLRKAEES-IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 527 eAl~~~~~a-l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
+|.+.+... +...|.. ..-+. +.....|+++|.+++..|.|.-+..+
T Consensus 258 kA~KlL~~sni~~~~g~---~~T~q-----------------------------~~~cif~NNlGcIh~~~~~y~~~~~~ 305 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGG---TITPQ-----------------------------LSSCIFNNNLGCIHYQLGCYQASSVL 305 (696)
T ss_pred HHHHHHHhcccccccCc---cccch-----------------------------hhhheeecCcceEeeehhhHHHHHHH
Confidence 887766543 1111221 00000 00145778999999999999999999
Q ss_pred HHHHHh-----------hcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 606 YSNALK-----------IRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 606 ~~~Al~-----------~~~~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
|.+|++ ..+. ..+|+.|..|...|++..|.++|.+++.....++.+|..++
T Consensus 306 F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 306 FLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999995 1111 68899999999999999999999999998887777776654
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.06 E-value=0.0012 Score=45.12 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=30.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCC
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY 416 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~ 416 (760)
|.+++.+|.+++..|++++|+..|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 251
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.05 E-value=0.018 Score=60.87 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
.+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------ 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------------
Confidence 3677778888888889999999999997766778899999999777 566666999999999998888
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
...|......+...++.+.|...|++++..-+. ..|......-...|
T Consensus 70 ----------------------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 70 ----------------------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp ----------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred ----------------------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 677777778888899999999999999984222 57778888888899
Q ss_pred CHHHHHHHHHHHHHhccCcHHHH
Q 004336 630 NKTTAYEEMTKLIKKARNNASAY 652 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~ 652 (760)
+.+......+++.+..|....+.
T Consensus 122 dl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 122 DLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp -HHHHHHHHHHHHHHTTTS-HHH
T ss_pred CHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999998888654443
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.02 E-value=0.0013 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
+.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.01 E-value=0.36 Score=50.87 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhhHHHhcC-CHHHHHHHHHHHHhhC-------CCCcch-hchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 379 DRQRLLAFHQLGCVRLLRK-EYDEAEHLFEAILTLS-------PDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g-~~~eA~~~~~~aL~l~-------P~~~~~-~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
....+..+|..|.-.+.++ ++++|..++++++..- ...+.. ..+...+..++.++...+.++......
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~--- 107 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL--- 107 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH---
Confidence 3467888999999999999 9999999999998872 122222 344567778888888777665433322
Q ss_pred ccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH-HHHCCCHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWI-LYDTSHCEE 527 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i-~~~~g~~ee 527 (760)
..+..+-...|+.+..++..-.+..+.++.+++.+.+.+++..-+ .....-..+..+ .........
T Consensus 108 ------------~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~ 175 (278)
T PF08631_consen 108 ------------NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL 175 (278)
T ss_pred ------------HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH
Confidence 112555555677777775555566668999999999999987644 222221112222 112234456
Q ss_pred HHHHHHHHHhhc--CChHHHHHHHHHHH---cccCCCCcchhhhhHHHHHHhhhHhh----ccH------HHHHHHHHHH
Q 004336 528 GLRKAEESIQMK--RSFEAFFLKAYALA---DSSQDSSCSSTVVSLLEDALKCPSDR----LRK------GQALNNLGSV 592 (760)
Q Consensus 528 Al~~~~~al~l~--p~~~a~~~la~~l~---~~~~~~~~~~~~~~~leeAl~~~~~~----l~~------~~a~~~Lg~~ 592 (760)
|...+...+... |....+.....+.. .+..........+..+++.+....+. +.+ ...+.+.|..
T Consensus 176 a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~ 255 (278)
T PF08631_consen 176 AAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKK 255 (278)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 777777766532 22211333322222 11111111111223333333322222 211 2344456777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004336 593 YVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 593 y~~~g~~~eA~~~~~~Al 610 (760)
.++.++|++|+++|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 778888888888887665
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.01 E-value=0.016 Score=61.26 Aligned_cols=133 Identities=9% Similarity=-0.101 Sum_probs=106.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH-ccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
|..+.......+..+.|...|.++++..+... ..|...|.+... .++.+.|...|
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~------~vy~~~A~~E~~~~~d~~~A~~If------------------ 59 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTY------HVYVAYALMEYYCNKDPKRARKIF------------------ 59 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T------HHHHHHHHHHHHTCS-HHHHHHHH------------------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHhCCCHHHHHHHH------------------
Confidence 34444445555579999999999986555443 778888888666 56666699999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+.++...|.+...|......+...|+.+.|...|++++..-|... ..|......-...|+.+....+.+++.+..|+
T Consensus 60 e~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 60 ERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998877665 57777778888899999999999999999888
Q ss_pred h
Q 004336 542 F 542 (760)
Q Consensus 542 ~ 542 (760)
.
T Consensus 140 ~ 140 (280)
T PF05843_consen 140 D 140 (280)
T ss_dssp S
T ss_pred h
Confidence 6
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.052 Score=56.04 Aligned_cols=128 Identities=17% Similarity=0.074 Sum_probs=87.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
+.-....|++.+|...|..++...|++. ++...++.++...|+.+.|...+ ...-.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL------------------~~lP~ 196 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAIL------------------AALPL 196 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHH------------------HhCcc
Confidence 3334455599999999999999999996 89999999999999999998877 11111
Q ss_pred hCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 470 SDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 470 ~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
...++. ......-..+.+.....+. ..+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+..+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111110 0000011222222222222 23455567789999999999999999999999988888888876655
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.97 E-value=0.96 Score=53.36 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++......+-......++++|.....++...-+. .++.....|.+....|++++|++..+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556666777788888888877776554332 1233344567777788888888888888876665500
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------H
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------R 616 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~ 616 (760)
..+..++..+|.+..-.|++++|..+...+.+.... .
T Consensus 494 -----------------------------------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 494 -----------------------------------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred -----------------------------------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 011456777888888899999999888888775222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHH--HHHHHH----HhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhh----CCC--ChH
Q 004336 617 AHQGLARVHFLKNNKTTAYE--EMTKLI----KKARNNASAYEKR----SEYCDRELTRADLEMVTQL----DPL--RVY 680 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~--~l~~al----~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l----~p~--~~~ 680 (760)
+....+.++..+|+...|.. .+...- ...|..+.....+ ..+.+.+.+.....+.++. .|. ...
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 44555777888884333332 222211 1122111111111 1112234444444444333 222 222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHH------HHHHHHHHcCCHHHHHHHHHH
Q 004336 681 -PYRYRAAVLMDSHKENEAIAELSRAIAFKADL--HLLH------LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 681 -~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~--~~~~------l~a~~~~~~g~~~~A~~~~~~ 737 (760)
.+..++.+++..|++++|...+......-.+. ...+ .+..++...||+.+|.....+
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 23478999999999999999988876543322 2222 335566677999998888777
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.13 Score=51.60 Aligned_cols=204 Identities=13% Similarity=0.005 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
+..|..-+..|...++|++|..++.++.+-..++. .++-..|.+......+.|+..+|+++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------ 104 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------ 104 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------
Confidence 45566666677777777777777777764433221 223333444444444444444444444322111
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----h----HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----T----RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~----~a~~~ 620 (760)
|..+- +..-...+--..+..++++|++.|++++.+-. . +.+..
T Consensus 105 ------------------Gspdt-----------AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 105 ------------------GSPDT-----------AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred ------------------CCcch-----------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 11111 11111222223455667777777777766311 1 34444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
.++++.+..++++|-..+.+-..... -....|.....+.....++.-..+|..|..
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~------------------------~~~~y~~~~k~~va~ilv~L~~~Dyv~aek 211 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAAD------------------------KCDAYNSQCKAYVAAILVYLYAHDYVQAEK 211 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHH------------------------HHhhcccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666666555554443211100 011123333344444455666678999999
Q ss_pred HHHHHHHcC----CCcHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004336 701 ELSRAIAFK----ADLHLLH-LRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 701 ~l~kal~~~----p~~~~~~-l~a~~~~~~g~~~~A~~~~~~a 738 (760)
.++...++. |++.... -.-..|.. ||.++....+..-
T Consensus 212 c~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 212 CYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKVLSSP 253 (308)
T ss_pred HhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHHHcCh
Confidence 888765542 2222222 22344555 8888777666543
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0072 Score=62.76 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHH--hHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHH
Q 004336 364 KTVCFLERLLESAE--TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 441 (760)
Q Consensus 364 ~~~~lle~l~~~a~--~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~ 441 (760)
....-|+.+.-.+. +.-..|..|-.-|+-|+..++|..|+..|.+.|+..-.++++
T Consensus 60 ~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------- 117 (390)
T KOG0551|consen 60 PDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------- 117 (390)
T ss_pred ccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH----------------------
Confidence 33344555544432 245688889999999999999999999999999987666521
Q ss_pred HHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 442 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 442 A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
++.+|.+.|-+....|+|..|+....+++.++|.+..+++.-+.+++.
T Consensus 118 --------------------------------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 118 --------------------------------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred --------------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 123444555555666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 004336 522 TSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 522 ~g~~eeAl~~~~~al~l~p~ 541 (760)
+.++.+|..+.+..+.++-+
T Consensus 166 Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHH
Confidence 66666666666666555433
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.94 E-value=0.0019 Score=44.05 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++.+|.+++.+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.93 E-value=0.14 Score=59.43 Aligned_cols=262 Identities=16% Similarity=0.039 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQH-----AASDHERLVYEGWILYDTS-----HCEEGLRKAEESI 536 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~-----g~~~~Ai~~l~kal~~-----~p~~~~a~~~Lg~i~~~~g-----~~eeAl~~~~~al 536 (760)
-.+..+.+.+|.+|..- .+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... +.+.|+.+|.++-
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 45677788888887764 7999999999999771 1125567889999998853 7788999999998
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD----CGQLDLAADCYSNAL 610 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al 610 (760)
..... .+.+.+|.++.... .......|.++|..+-+. ..+.+.+|.+|.. ..+...|..+|.++.
T Consensus 321 ~~g~~-~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 321 ELGNP-DAQYLLGVLYETGT--------KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred hcCCc-hHHHHHHHHHHcCC--------ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 76433 58888998888861 124567888888888544 7888888888865 357899999999999
Q ss_pred hhcchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccC----cHHHHHHHH-hc-------CCHHHHHHHHHHHHhhCCC
Q 004336 611 KIRHTRAHQGLARVHFLK-NNKTTAYEEMTKLIKKARN----NASAYEKRS-EY-------CDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 611 ~~~~~~a~~~La~~~~~~-g~~~~A~~~l~~al~~~~~----~~~~~~~~~-~~-------~~~~~A~~~l~kal~l~p~ 677 (760)
+.++..+...++..+... ++++.+...+....+..-. ++....... .. .+...+...+.++.. ..
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g 469 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QG 469 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--cc
Confidence 988776666666665544 7777777766665544331 111111111 00 123344444444433 44
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcH
Q 004336 678 RVYPYRYRAAVLMDS----HKENEAIAELSRAIAFKADLHLLHLRAAFHEHT---GDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 678 ~~~~~~~La~~~~~~----g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~---g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+..+...+|.+|..- .+++.|...|.++.... ....+..+..++.- .....|.++|.++.+.+.+..
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhh
Confidence 566777788777654 35899999999998766 33333335555542 126889999999988776544
No 261
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.27 Score=58.04 Aligned_cols=278 Identities=13% Similarity=0.031 Sum_probs=165.3
Q ss_pred HHHHHHHccCHHHHHHHHhhhcccccc-----CCcCcHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSV-----DDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~-----~d~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
+|.+....+-+++|-..+..++..... +++++ +.++.+. .-+.+.+|..+|.+.++.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~---ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGS---LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhh---HHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 345555566667777666444432110 11222 2222221 1356889999999999999999999999664
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 502 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 502 l~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
+++..+...-.+..+.|+|++-+.++..+-+.-.....-..+-.+|+.. +++.+..+...-. .
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt-----------~rl~elE~fi~gp-N 1193 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT-----------NRLTELEEFIAGP-N 1193 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh-----------chHHHHHHHhcCC-C
Confidence 6777888888999999999999999998887644431122233334443 2222222211100 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCH
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 661 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 661 (760)
..-....|.-.+..|.|+.|.-+|... .-|..|+..+...|+|..|.+..+++-... .|......+-
T Consensus 1194 -~A~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k-----tWK~VcfaCv- 1260 (1666)
T KOG0985|consen 1194 -VANIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLGEYQGAVDAARKANSTK-----TWKEVCFACV- 1260 (1666)
T ss_pred -chhHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhccchh-----HHHHHHHHHh-
Confidence 122334678888889999888888654 346678888888999988888877653221 1211100000
Q ss_pred HHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004336 662 ELTRADLEMVTQLD-PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 662 ~~A~~~l~kal~l~-p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL 739 (760)
+.-.-.+.+..-++ --.+.-+-.+..-|...|-++|-+..++.++.+...+-... -.+.+|.+ =++++-.+.++-.+
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLKLFW 1339 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 00000011111111 01123345567788899999999999999987765444333 22666665 67777777766554
Q ss_pred h
Q 004336 740 S 740 (760)
Q Consensus 740 ~ 740 (760)
.
T Consensus 1340 s 1340 (1666)
T KOG0985|consen 1340 S 1340 (1666)
T ss_pred H
Confidence 3
No 262
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.072 Score=51.70 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 682 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 682 ~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
-..+|.+..++|++++|+..++..-...=......+++.++...|+.++|+..|+++++.+++.+.
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 356899999999999999988765432112223448899999999999999999999998765543
No 263
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.77 E-value=0.0021 Score=69.95 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=91.5
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..+.-++.-++|+.|+..|.+++.++|+.. ..+.+.+.++.+.+++..|+.-+ .++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca------~~~anRa~a~lK~e~~~~Al~Da------------------~ka 64 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCA------IYFANRALAHLKVESFGGALHDA------------------LKA 64 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcce------eeechhhhhheeechhhhHHHHH------------------Hhh
Confidence 344555666799999999999999999996 33444667778888888888877 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++.+|....+|++.|.+....+++.+|...|++.....|+++.+...+-.+-
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877665543
No 264
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.045 Score=54.66 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..++..-|+-++..|+|.+|...|+.|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~ 206 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAII 206 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence 57888899999999999999999999875
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.47 Score=55.19 Aligned_cols=145 Identities=10% Similarity=-0.088 Sum_probs=104.6
Q ss_pred HHHHHHHHhhhHHHhc-----CCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHcc-----CHHHHHHH
Q 004336 381 QRLLAFHQLGCVRLLR-----KEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHID-----NWTIADCW 445 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~-----g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g-----~~~~A~~~ 445 (760)
....+.+.+|.+++.- .|.+.|+.+|+.+... .-.++ .+.+.+|.+|.+.. +.+.|..+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~------~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP------PAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC------ccccHHHHHHhcCCCCccccHHHHHHH
Confidence 3455667777776653 6899999999998761 11132 56778899988743 56778888
Q ss_pred HhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 004336 446 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHAASDHERLVYEGWILYD- 521 (760)
Q Consensus 446 l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~- 521 (760)
+ .++... +++.+.+.+|.++..-. ++..|.++|..|.+. .+..+.+++|.+|..
T Consensus 316 ~------------------~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 316 Y------------------TKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred H------------------HHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 8 555544 56778889999888766 678999999998765 467888999988875
Q ss_pred ---CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 522 ---TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 522 ---~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+...|..+|+++.+.. ...+.+.++..+..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEY 408 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHH
Confidence 458899999999999887 22444444444433
No 266
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.59 E-value=0.45 Score=50.41 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=108.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc----cCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI----DNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~----g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+......+++..|..++..+-.. .. ..+...++..+... .+..+|..|+ .
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~--~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~------------------~ 101 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAEL--GD------AAALALLGQMYGAGKGVSRDKTKAADWY------------------R 101 (292)
T ss_pred cccccccccHHHHHHHHHHhhhc--CC------hHHHHHHHHHHHhccCccccHHHHHHHH------------------H
Confidence 33445666888888888877651 11 24566666666443 3466677777 4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCC-------CHHHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTS-------HCEEGLRKAE 533 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~~g-------~~eeAl~~~~ 533 (760)
.......+.+.+.+|.+|.. ..++.+|..+|+++.+..-.. ..+.+.+|..|..-+ +...|...|.
T Consensus 102 --~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 102 --CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred --HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 23335566777778887776 447788888888887764333 234666676666542 1113444444
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNA 609 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~A 609 (760)
++-... ...+...+|.+|.. ..++.+|..+|.++
T Consensus 180 ~aa~~~------------------------------------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 180 KAAELG------------------------------------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HHHHhc------------------------------------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 433221 15677778877754 45899999999999
Q ss_pred HhhcchHHHHHHHHHHHHcC
Q 004336 610 LKIRHTRAHQGLARVHFLKN 629 (760)
Q Consensus 610 l~~~~~~a~~~La~~~~~~g 629 (760)
-+.++....+.++ +++..|
T Consensus 218 a~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 218 AEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HHCCCHHHHHHHH-HHHhcC
Confidence 9988788888888 777766
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.19 Score=52.09 Aligned_cols=150 Identities=14% Similarity=0.004 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH--HH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA--YA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la--~~ 551 (760)
..+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....+....-..+ ..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4455667778889999999999999999999999999999999999999999999887765432222221111111 00
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFL 627 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~ 627 (760)
+... .+ .....+....+.......++-+.++..+...|++++|.+.+-..++.+.. .+...+-.++..
T Consensus 213 l~qa-a~-------~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQA-AA-------TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHH-hc-------CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 0000 00 01111111111111222566667777777777777777777666664322 444455555555
Q ss_pred cCCH
Q 004336 628 KNNK 631 (760)
Q Consensus 628 ~g~~ 631 (760)
.|.-
T Consensus 285 ~g~~ 288 (304)
T COG3118 285 FGPA 288 (304)
T ss_pred cCCC
Confidence 5533
No 268
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.038 Score=52.04 Aligned_cols=62 Identities=26% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+...++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999998754
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.12 Score=58.66 Aligned_cols=119 Identities=20% Similarity=0.001 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004336 596 CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 673 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~ 673 (760)
....+.|.+.++...+..|. -.++..|+++...|+.++|++.+++++........+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql---------------------- 303 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL---------------------- 303 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH----------------------
Confidence 45677888888888886666 556677888888999988888888776322211110
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHcCCH-------HHHHHHHHHHHh
Q 004336 674 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDV-------LGALRDCRAALS 740 (760)
Q Consensus 674 l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~a~~~~~~g~~-------~~A~~~~~~aL~ 740 (760)
..-.++.+|+++.-+++|++|...+.+..+.+.-....+ +.|.++...|+. ++|.+.++++-.
T Consensus 304 ----~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 304 ----HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 123467788899999999999999999888777666544 558888888888 788888877754
No 270
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.44 E-value=0.78 Score=48.57 Aligned_cols=188 Identities=15% Similarity=0.031 Sum_probs=115.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
..+++..|...+.++-.. .+..+...++..|.. ..+..+|..+|+.+.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~-------------------- 108 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGL-------------------- 108 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--ccc--------------------
Confidence 455666666666666542 223555666666554 2345666666663332 222
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHH---HHHHHHHHHHcCCHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRA---HQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a---~~~La~~~~~~g~~~~A~ 635 (760)
+.+.+++|.+|.. ..++.+|..+|++|.+.++..+ .+.++..|..-+ ...+.
T Consensus 109 --------------------~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~ 167 (292)
T COG0790 109 --------------------AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV 167 (292)
T ss_pred --------------------HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc
Confidence 4556666666665 4488999999999999887766 777887776653 11011
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~ 711 (760)
.. +...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+...
T Consensus 168 ~~----------------------~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~- 222 (292)
T COG0790 168 AY----------------------DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD- 222 (292)
T ss_pred cH----------------------HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-
Confidence 00 1134555555555544 56777788877755 3478899999999988776
Q ss_pred cHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCCc
Q 004336 712 LHLLHLRAAFHEHTG---------------DVLGALRDCRAALSVDPND 745 (760)
Q Consensus 712 ~~~~~l~a~~~~~~g---------------~~~~A~~~~~~aL~l~P~~ 745 (760)
....+..+.++. .| +...|...+.++-...+..
T Consensus 223 ~~a~~~~~~~~~-~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 223 GAACYNLGLMYL-NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHh-cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 232233343333 34 8888888888887765543
No 271
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.43 E-value=0.0024 Score=63.78 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=43.5
Q ss_pred eEeehhHHHHhcCCHHHHhhccCCCCCC---------ccceeEecCCCCCHHHHH-HHHhccccCccC
Q 004336 191 EKIECDRQKFAALSAPFSAMLNGSFMES---------LCEDIDLSENNISPSGLR-IISDFSVTGSLN 248 (760)
Q Consensus 191 ~~~~~hr~~la~~s~yf~amf~~~~~e~---------~~~~v~~~~~~i~~~~~~-~~~~~~yt~~~~ 248 (760)
.+|.||+.|.|+.|++||.++....+|. ..++|.+.+ -|=|..+. .++.|.||.+++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 4799999999999999999986555443 345677774 56565554 567899999995
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=2.6 Score=48.22 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-- 582 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-- 582 (760)
-|++...+-.+|..+...|..++|.+.|-+-- .|.- + + .... .+.+|.+|.+..++..-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka-A---v-~tCv-----------~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA-A---V-HTCV-----------ELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH-H---H-HHHH-----------HHHHHHHHHHHHHhccchhH
Confidence 47777777888888888888888887775432 1221 0 0 0111 126777777777766222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
.......+.-+...++.-+|++.++++
T Consensus 910 ~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 910 QTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 333333455566677788888877776
No 273
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.36 E-value=2.4 Score=47.40 Aligned_cols=143 Identities=16% Similarity=0.015 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcch---HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcc---CcHHHH--HHHHhcCCHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT---RAHQGLARVHFLKN---NKTTAYEEMTKLIKKAR---NNASAY--EKRSEYCDRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g---~~~~A~~~l~~al~~~~---~~~~~~--~~~~~~~~~~~A~~~ 667 (760)
-++|..+|++++..-.. ..++.++.--...- +++.-...+++++.+.. .....- +......-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 57888888888773211 23333333222222 25555566666665443 222211 111111223556667
Q ss_pred HHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 668 LEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~-~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
|.++-+........+..-|. -|...++..-|...|+-.+...++.+.+-+. ..++...++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 77766554443344444443 3567889999999999999999999977766 67777788888999999999876
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.35 E-value=0.064 Score=60.90 Aligned_cols=121 Identities=17% Similarity=0.060 Sum_probs=96.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
.....+.|.+.++...+..|+..-.++..|.++...|+.++|+..|++++......
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------------------------ 300 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------------------------ 300 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------------------------
Confidence 35677889999999999999999999999999999999999999999988433222
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCH-------HHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNK-------TTAYE 636 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~-------~~A~~ 636 (760)
.++ ..-.++.+|.++.-+.+|++|..+|.+..+.+.- -..+..|-++...|+. ++|..
T Consensus 301 ~Ql------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~ 368 (468)
T PF10300_consen 301 KQL------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEE 368 (468)
T ss_pred HhH------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHH
Confidence 000 0356788999999999999999999999886443 5566778899999988 66666
Q ss_pred HHHHHHH
Q 004336 637 EMTKLIK 643 (760)
Q Consensus 637 ~l~~al~ 643 (760)
.+.++-.
T Consensus 369 l~~~vp~ 375 (468)
T PF10300_consen 369 LFRKVPK 375 (468)
T ss_pred HHHHHHH
Confidence 6665543
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.42 Score=54.35 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=121.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
+.+| ++.+|..+|......-.++.|...|-+.-.. |.- ..--...+.+-.--|++++|.+.|-.+-+.+
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3344 6889999998877777777777776553211 111 0011233555556789999998886543222
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR------LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~------l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
-..+.+..+ +.|-...+.++.. ....+++.++|..+.....|++|.++|...-.
T Consensus 765 LAielr~kl------------------gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 765 LAIELRKKL------------------GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhHHHHHhh------------------hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 111222222 2333333333332 11167899999999999999999999977532
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 004336 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH 693 (760)
Q Consensus 614 ~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g 693 (760)
.-++..+++...++++-....+.+-+..+-.+.+.......|--++|.+.|-+-. .|.- -.......+
T Consensus 825 ----~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~Ln 892 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELN 892 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHH
Confidence 2356667777777755544444443333333333333333355555555443211 1110 011333445
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
++.+|.+..++- .-|.-..+..+ +.-+...++..+|++.++++
T Consensus 893 QW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 893 QWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 555555544331 11222222211 22233336667777766665
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.025 Score=58.92 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
|++..|+.+..+++.++|.+..+++.-|.++..+.++++|..+.+..+.
T Consensus 133 ~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 133 GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555555555555555555555555555555555555555554433
No 277
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0046 Score=65.98 Aligned_cols=118 Identities=20% Similarity=0.146 Sum_probs=92.6
Q ss_pred CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH---HHHHHHhhhC
Q 004336 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (760)
Q Consensus 190 ~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~---~ll~~a~~~~ 266 (760)
++.|.+|++++++.|+-|++|+..+..+...+.+++. +.++..++++..|.|+..-. .+.+... .+++++.+..
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 4569999999999999999999998888877778775 78999999999999997664 4555554 8889999999
Q ss_pred hHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHH
Q 004336 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVF 311 (760)
Q Consensus 267 ~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~ 311 (760)
...++..|...+.+.+ ...++......+..+....+...+..+.
T Consensus 186 ~~~lk~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLI-ETLNVSQSLQEASNYDLKEAKSALTYVI 229 (297)
T ss_pred cHHHHHHHHHHHHHHH-HhhhhcccHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999887 3344444445555555555555555544
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.42 Score=46.50 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
..|.++...|+-++|...|++++..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3455555555555555555555554
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.02 E-value=0.013 Score=39.87 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+++.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
No 280
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.31 Score=45.72 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 593 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y 593 (760)
..|......|+.+.++..+++++.+.... .+... ... .-.......+... -..+...++..+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~--------~l~~~-----~~~---~W~~~~r~~l~~~--~~~~~~~l~~~~ 72 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGD--------FLPDL-----DDE---EWVEPERERLREL--YLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SS--------TTGGG-----TTS---TTHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCC--------CCCCC-----Ccc---HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34555667788899999999998875433 00000 000 0000000000000 056778889999
Q ss_pred HHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 594 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 594 ~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~ 643 (760)
...|++++|+..+++++..+|. .++..+..+|...|+..+|++.|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999887 7999999999999999999999997654
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.92 E-value=0.012 Score=40.11 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=29.8
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCC
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY 416 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~ 416 (760)
|.+++.+|.++...|++++|...|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4578899999999999999999999999999853
No 282
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.91 E-value=0.0071 Score=63.15 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.-.+..|.+++|++.|..++.++|..+..+...+.++..+++...|+..+..++.++|+.
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-------------------- 181 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-------------------- 181 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--------------------
Confidence 344567889999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.-|-..|.....+|++++|...+..+.+++..
T Consensus 182 --------------------a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 --------------------AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred --------------------ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 555566677777788888888888888886554
No 283
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.84 E-value=0.025 Score=50.08 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=59.9
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCC-ccceeEecCCCCCHHHHHHHHhccccCccC-------------
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN------------- 248 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~-~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~------------- 248 (760)
|+|.. +|.+|...+.+. ..|.-++.|+.+.-.+. ....|.|+ +|+..+|+.|++|.+--+-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56654 678899988865 68899999997533222 22589997 79999999999998743211
Q ss_pred -----CCChhhHHHHHHHHhhhCh
Q 004336 249 -----GVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 249 -----~~~~~~v~~ll~~a~~~~~ 267 (760)
.++.+.+.+|+.|||.|++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0566789999999998764
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.83 E-value=0.0033 Score=65.55 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
+..|.++.|++.+..+|++.|..+.+|..+. ...+...|+.++..++.++|+.+..|-..+.+...+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3456666666666666666665555554442 224455555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCc
Q 004336 702 LSRAIAFKADL 712 (760)
Q Consensus 702 l~kal~~~p~~ 712 (760)
+..+.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 55555554443
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.83 E-value=5.6 Score=46.98 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH-HccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--CCcH
Q 004336 399 YDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKG 475 (760)
Q Consensus 399 ~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~-~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--p~~~ 475 (760)
...|+.+++.+++ ++.-+ ...++.+...+|.++. ...+++.|..++ .+++... ++-.
T Consensus 37 I~~ai~CL~~~~~-~~~l~-p~~ea~~~l~la~iL~~eT~n~~~Ae~~L------------------~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLS-PRQEARVRLRLASILLEETENLDLAETYL------------------EKAILLCERHRLT 96 (608)
T ss_pred HHHHHHHHHHHhc-cCCCC-HHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhccccchH
Confidence 4678899998886 22222 2233456667777665 889999999999 7776655 3322
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-HHHHHH-H-HHHHHHCCCHHHHHHHHHHHHhhc--CChH
Q 004336 476 ----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---D-HERLVY-E-GWILYDTSHCEEGLRKAEESIQMK--RSFE 543 (760)
Q Consensus 476 ----~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~-~~a~~~-L-g~i~~~~g~~eeAl~~~~~al~l~--p~~~ 543 (760)
...+.++.++.+.+... |...+++.++.... . ....+. + ...+...+++..|+..++...... +.+.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 33456678888888777 99999999887544 1 111222 2 233333489999999999988765 3332
Q ss_pred HHHHHHHHH-HcccCCCCcchhhhhHHHHHHhhhHhh-----cc--HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHh--
Q 004336 544 AFFLKAYAL-ADSSQDSSCSSTVVSLLEDALKCPSDR-----LR--KGQALNNLG--SVYVDCGQLDLAADCYSNALK-- 611 (760)
Q Consensus 544 a~~~la~~l-~~~~~~~~~~~~~~~~leeAl~~~~~~-----l~--~~~a~~~Lg--~~y~~~g~~~eA~~~~~~Al~-- 611 (760)
..+.++... .............+..+.++....... .. ...++..+- .++...|+++.+.+..++.-.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 222222111 111112233444555565554444432 11 123333332 245567777776665544322
Q ss_pred ----hcc--------------------------h------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 612 ----IRH--------------------------T------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 612 ----~~~--------------------------~------------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
..+ . -.+.--|......|..+.|.+++.++++.-....
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 011 1 0112223444555666577777776655432111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC------cHHHH-HHH
Q 004336 650 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK---AD------LHLLH-LRA 719 (760)
Q Consensus 650 ~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~---p~------~~~~~-l~a 719 (760)
. -.......-...+...... ..--......+.++...-.+++..|...++.+.... |. .+..+ +.|
T Consensus 336 ~-~~~~~~~~sl~~~~~~~~~---~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 336 I-KSPSAPSESLSEASERIQW---LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred c-cCCCCCCcCHHHHHHhHHH---HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 0 0000000000000000000 000011345677888889999999998888776543 22 12223 558
Q ss_pred HHHHHcCCHHHHHHHHH
Q 004336 720 AFHEHTGDVLGALRDCR 736 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~ 736 (760)
.++...|+.+.|...|.
T Consensus 412 l~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 412 LYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 88889999999999998
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.78 E-value=0.77 Score=49.51 Aligned_cols=149 Identities=15% Similarity=0.003 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNC------------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
..+.+.+..+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34688999999999999998875554432 456778999999999999999888888888888999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---------------HHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---------------GQALNNLGSVY 593 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---------------~~a~~~Lg~~y 593 (760)
+.+++++..+|+. ..|...-...... ............+.+++..+...... ..++..+....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 5544332222221 11122233344444444444333110 34445555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 004336 594 VDCGQLDLAADCYSNALK 611 (760)
Q Consensus 594 ~~~g~~~eA~~~~~~Al~ 611 (760)
.+.|-.+.|+..++..++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLE 182 (321)
T ss_pred HHCCchHHHHHHHHHHHH
Confidence 666666666666666665
No 287
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.69 E-value=0.012 Score=61.58 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=75.5
Q ss_pred eEeehhHHHHhcCCHHHHhhccCCCCCC-ccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHHHhhhChHh
Q 004336 191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (760)
Q Consensus 191 ~~~~~hr~~la~~s~yf~amf~~~~~e~-~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~a~~~~~~~ 269 (760)
+.|.|.|-.|-+-=.||+..+.....++ ..++|+|+ -.-+..+++=|++|+....-. ++++||-.||.-++.++++.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996533222 23467776 246899999999999987775 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004336 270 LKDACDRKLASLV 282 (760)
Q Consensus 270 ~~~~c~~~l~~~~ 282 (760)
|++.|-.|+..++
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999997654
No 288
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=3 Score=42.58 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=149.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
+.+...-..|++.-+.++.++|.+-.+|.+.-.++..++ +..+-+.++.+.+.-+|.+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN--------------------- 111 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN--------------------- 111 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 334455667888888888888888887777666665543 5667778888888888877
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD-LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~-eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
-++|...-.+....|++. .-++..+.++..+.. .+|...-.+...-+.++.-+.+..+
T Consensus 112 -------------------YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 112 -------------------YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred -------------------hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 556666666666666666 566777777775433 6788888888888889999999999
Q ss_pred HHHhccCcHHHHHHHHhc-----C-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-
Q 004336 641 LIKKARNNASAYEKRSEY-----C-----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMD-SH--KENEAIAELSRAI- 706 (760)
Q Consensus 641 al~~~~~~~~~~~~~~~~-----~-----~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~-~g--~~~eAi~~l~kal- 706 (760)
+++.+-.+.++++.+.-. | ..+.-+....+.+.+.|.+..+|.+|..++.. .| ...+-.......+
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~ 252 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL 252 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh
Confidence 999988777777765311 1 23455667788899999999999999988886 44 1333333333333
Q ss_pred HcCCCcHHHH-HH------HHHHHHcCCHH---HHHHHHHHHH-hcCCCcHHHHHH
Q 004336 707 AFKADLHLLH-LR------AAFHEHTGDVL---GALRDCRAAL-SVDPNDQEMLEL 751 (760)
Q Consensus 707 ~~~p~~~~~~-l~------a~~~~~~g~~~---~A~~~~~~aL-~l~P~~~~~l~~ 751 (760)
...-..+.+. .. .....+.+.-+ +|...|+..- +.||-....+..
T Consensus 253 ~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 253 QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 2222223222 11 12222334444 5666776554 677766555443
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=3 Score=45.17 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 588 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~ 588 (760)
...+...+.+....|+++.|...+.++...++.... ..+.+...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------------------------------------~~~~v~~e 189 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------------------------------------LLPRVFLE 189 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------------------------------------CCcchHHH
Confidence 345555666666666666666666666555432200 01456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcch-----------------------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIRHT-----------------------------RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----------------------------~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
.+.++...|+..+|+..++..++.... ......+.++...|++....
T Consensus 190 ~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~---- 265 (352)
T PF02259_consen 190 YAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL---- 265 (352)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh----
Confidence 777788888888888888777661100 11122233333333332211
Q ss_pred HHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 004336 640 KLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK-----------------ENEAIAEL 702 (760)
Q Consensus 640 ~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~-----------------~~eAi~~l 702 (760)
+ .....+..+++...|.++++.+|....+|+.+|..+...=. ...|+..|
T Consensus 266 ------------~-~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 266 ------------Y-SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred ------------c-cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 0 00123566888888889999998888888888776654311 13366666
Q ss_pred HHHHHcCCC
Q 004336 703 SRAIAFKAD 711 (760)
Q Consensus 703 ~kal~~~p~ 711 (760)
-+++...+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 666666665
No 290
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.49 E-value=0.024 Score=56.81 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCcc---ceeEecCCCCCHHHHHHHHhccccCccC
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC---EDIDLSENNISPSGLRIISDFSVTGSLN 248 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~---~~v~~~~~~i~~~~~~~~~~~~yt~~~~ 248 (760)
||-+.....-||+||++||+.||+|+.+.+.+- |... -+|++- |++-+++++++.|.|||.-.
T Consensus 132 dldiiFkeTcfpahRA~laaRCpffK~l~nsd~-e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 132 DLDIIFKETCFPAHRAFLAARCPFFKILANSDE-EPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred cceeeeeeccchHHHHHHHhhCcchhhhccCCC-Ccchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 666666677899999999999999999887642 2222 245664 89999999999999999985
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.48 E-value=5 Score=44.05 Aligned_cols=134 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|.++-.++++.+|...|.++.....+.+....+ +.+..+-.-..-..+.+.-...+
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lke-Evl~grilnAffl~nld~Me~~l------------------ 68 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKE-EVLGGRILNAFFLNNLDLMEKQL------------------ 68 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH-HHHhhHHHHHHHHhhHHHHHHHH------------------
Confidence 34566888888889999998888887766555422221 23322222223333333333333
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHH--HHHHHHHHHCCCHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------------HERL--VYEGWILYDTSHCEEGL 529 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-------------~~a~--~~Lg~i~~~~g~~eeAl 529 (760)
...-+..|..+....-.|....+.+++.+|++.+....+..... ++.+ .-.+..+...|++.++.
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 22233446666677777778888888888887776555441111 0111 22466677788888888
Q ss_pred HHHHHHHh
Q 004336 530 RKAEESIQ 537 (760)
Q Consensus 530 ~~~~~al~ 537 (760)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 77777664
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.48 E-value=6.1 Score=44.96 Aligned_cols=178 Identities=11% Similarity=-0.089 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc----HHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN----ASAYEKRS 656 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~----~~~~~~~~ 656 (760)
...|......-...|+++...-.|++++-+ ..+..|...++.....|+.+-|...+..+.+..-.. .-.+....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345666667777899999999999999874 344889999999999999999998888877765422 22222222
Q ss_pred -hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH---HHHHHHHHcCCCcHHH---HHH--HHHHHHcCC
Q 004336 657 -EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI---AELSRAIAFKADLHLL---HLR--AAFHEHTGD 727 (760)
Q Consensus 657 -~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi---~~l~kal~~~p~~~~~---~l~--a~~~~~~g~ 727 (760)
..|+++.|...+++..+.-|+...+-...+.+..+.|+.+.+. ..+.....-.-+.... ... -..+.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 2479999999999998888999888888888899999999988 4444444332222211 122 233444589
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHhhccCC
Q 004336 728 VLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760 (760)
Q Consensus 728 ~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~~~ 760 (760)
.+.|...+.++++..|++...+..+.++.-.+|
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 999999999999999999998888877765443
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.41 E-value=8.1 Score=45.96 Aligned_cols=194 Identities=14% Similarity=0.058 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A 494 (760)
......+.......++.+|..++ .++...-+. .+...-..|.+....|++++|
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li------------------~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a 477 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLI------------------ARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEA 477 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHH------------------HHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHH
Confidence 33445667777888999998887 333322221 123344567788899999999
Q ss_pred HHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-----HHH--HHHHHHHHcccCCCCcc
Q 004336 495 MRSLQLARQHAASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-----EAF--FLKAYALADSSQDSSCS 562 (760)
Q Consensus 495 i~~l~kal~~~p~~~-----~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-----~a~--~~la~~l~~~~~~~~~~ 562 (760)
++..+.++..-|.+. .++..+|.+..-.|++++|..+.+++.+....+ ..| ...+.++..+
T Consensus 478 ~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q------- 550 (894)
T COG2909 478 EDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ------- 550 (894)
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh-------
Confidence 999999999877654 457788999999999999999999998875443 222 2224455555
Q ss_pred hhhhhH--HHHHHhhhHhh----ccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------h---HHHHHHHH
Q 004336 563 STVVSL--LEDALKCPSDR----LRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRH------T---RAHQGLAR 623 (760)
Q Consensus 563 ~~~~~~--leeAl~~~~~~----l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~------~---~a~~~La~ 623 (760)
|. +++....+... +.. .-.....+.++...-+++.+..-....++... . .+++.|+.
T Consensus 551 ----Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 551 ----GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred ----hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 32 22222222211 111 11222233333333337777766666666321 1 34458999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcc
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+++..|+.++|...+........
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988776554
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.39 E-value=0.88 Score=49.78 Aligned_cols=145 Identities=13% Similarity=-0.016 Sum_probs=95.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------C------------CCcH---HHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------------A------------ASDH---ERLVYE 515 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------------~------------p~~~---~a~~~L 515 (760)
...+..+|.+.+.+..++.++..+|+.+.|.+.+++|+-. + +.|. .+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4455677888888888888888888888888888777521 1 1122 234556
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
...+.+.|-+..|+++.+-.+.++|.. ++..+...+-....+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~--------------------------------------DP~g~ll~ID~~ALr 151 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDE--------------------------------------DPLGVLLFIDYYALR 151 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCC--------------------------------------CcchhHHHHHHHHHh
Confidence 677888999999999999999999984 011222223333344
Q ss_pred cCCHHHHHHHHHHHHh--hc-----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhccC
Q 004336 596 CGQLDLAADCYSNALK--IR-----HTRAHQGLARVHFLKNNK---------------TTAYEEMTKLIKKARN 647 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~--~~-----~~~a~~~La~~~~~~g~~---------------~~A~~~l~~al~~~~~ 647 (760)
.++|+--++.++.... .. -+..-+..+.+++..++. +.|...+.+++...|.
T Consensus 152 s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 152 SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4455444444444332 10 124556777788888887 8899999999998883
No 295
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.28 E-value=0.041 Score=53.72 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=74.3
Q ss_pred ceeEEEEecCeEeehhHHHHhcCCH--HHHhhccCC---CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 181 LRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 181 ~~dv~~~~~~~~~~~hr~~la~~s~--yf~amf~~~---~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
.+=|.+.+||+.|---+-.|...-| ..-+||.+. -.|+++.-|-| +-||.-++-|++|...|+|...+.-++
T Consensus 8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccH
Confidence 3557888999888766665555533 567899863 24555566777 579999999999999999987888899
Q ss_pred HHHHHHHhhhChHhHHHHHHH
Q 004336 256 LEILIFANKFCCERLKDACDR 276 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~ 276 (760)
.++|+.|+.|++-.|++.-+.
T Consensus 85 lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhh
Confidence 999999999999999987666
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.28 E-value=0.028 Score=39.11 Aligned_cols=27 Identities=44% Similarity=0.721 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++.+||.+|...|+|++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777554
No 297
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.26 E-value=0.055 Score=41.23 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 716 HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 716 ~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++.+..+.++|+|++|.++.+.+|+++|+|..+..+...+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 34455566667777777777777777777776666655544
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.12 E-value=0.23 Score=45.26 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-cCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 679 VYPYRYRAAVLMDSH---KENEAIAELSRAIA-FKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 679 ~~~~~~La~~~~~~g---~~~eAi~~l~kal~-~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
....+++|+++.... +..+.+..++..+. -.|+.. .+++.+.-+.+.|+|+.|+++.+..|+.+|+|.+++.+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456788999998765 46678899999986 444443 555778888888999999999999999999999999888
Q ss_pred HHhhc
Q 004336 753 SRVYS 757 (760)
Q Consensus 753 ~r~~~ 757 (760)
+.+.+
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 77764
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.10 E-value=0.032 Score=37.45 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555544443
No 300
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=9.6 Score=50.00 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc-------------H
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------------A 649 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~-------------~ 649 (760)
+..|.+.|.+....|+++.|..+.-+|.+...+.+....|......|+...|+..+++.++..-.. .
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 889999999999999999999999999998888999999999999999999999999999765311 0
Q ss_pred HH----------HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 650 SA----------YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 650 ~~----------~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
.. |......-..++-+..|..+.+..|.....++.+|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 00 00111111234556778888888887777777776
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.95 E-value=0.045 Score=36.70 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
++++.+|.++...|++++|++.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999873
No 302
>PRK10941 hypothetical protein; Provisional
Probab=94.89 E-value=0.19 Score=52.39 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
...++-.+|.+.++++.|+...+..+.+.|+++.-+ =+|.+|.++|.+..|...++..++..|+++++..+..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 346777899999999999999999999999998554 5699999999999999999999999999998776655544
No 303
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.86 E-value=0.073 Score=57.16 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=71.3
Q ss_pred EEEEecCeEeehhHHHHhcCC--HHHHhhccCCCCCCccce--eEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s--~yf~amf~~~~~e~~~~~--v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll 259 (760)
|.|-|||+.|.--|.-|+... .+|.|+|+|.+.-...+. |=| +=+|+.+..|++|..||.|+ ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 578899999999999999887 489999998886555544 555 56999999999999999997 7776666677
Q ss_pred H-HHhhhChHhHHH
Q 004336 260 I-FANKFCCERLKD 272 (760)
Q Consensus 260 ~-~a~~~~~~~~~~ 272 (760)
. =|..|++..+.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 6 899999988876
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.86 E-value=0.82 Score=44.63 Aligned_cols=120 Identities=21% Similarity=0.218 Sum_probs=85.0
Q ss_pred hhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ch-HHHHHHHHHHHHcCCHHHHHHH
Q 004336 566 VSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIR----HT-RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~----~~-~a~~~La~~~~~~g~~~~A~~~ 637 (760)
...++.-++.++...-+ ..++..+|..|.+.|++++|+++|.++.... +. +.+..+.++....|++......
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655433 6889999999999999999999999988732 22 7888999999999999988888
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
+.++-..-...+. +..+ .....+-|..++..++|.+|...|-.+..-.
T Consensus 96 i~ka~~~~~~~~d-~~~~-----------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 96 IEKAESLIEKGGD-WERR-----------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhccch-HHHH-----------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 8776544332110 0000 0122344677778899999999887776544
No 305
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=13 Score=44.75 Aligned_cols=222 Identities=12% Similarity=0.036 Sum_probs=123.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+....|.++|...+..|...+|++.|-++ +++ ..+...-.+..+.|.|++-+.+++..........+++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP------SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 34567888999999999999999998775 443 5566677788899999999888854443322222221
Q ss_pred HHH-----------HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 461 LSV-----------IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 461 l~~-----------~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.-. ++..+ ..|+.+. .-..|.-.+..|.|+.|.-.|.. ..-|..|+..+...|+|..|.
T Consensus 1171 eLi~AyAkt~rl~elE~fi-~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI-AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh-cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHH
Confidence 111 11111 1132222 22344455555555555544432 223455666666666777666
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 530 ~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
...+++-.. ..|.....+.-+. +.+.-|--+--...-.++-+-.+-..|...|-+++-+..++.+
T Consensus 1241 D~aRKAns~----ktWK~VcfaCvd~-----------~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1241 DAARKANST----KTWKEVCFACVDK-----------EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHhhhccch----hHHHHHHHHHhch-----------hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 666665322 3343333333332 1111111111111111455566777788888888888888888
Q ss_pred Hhhcch--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 610 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 610 l~~~~~--~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
+-+... ..+..||.+|.+- ++++-.+.++
T Consensus 1306 LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 765333 5555666666543 3544444444
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.60 E-value=0.065 Score=37.20 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 512 LVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 512 ~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
+.+||.+|...|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666443
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.59 E-value=8.2 Score=42.57 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=73.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+...|-.-...+|...|..| ....+.+.+....|+|+.+...+. . .++++... +
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p------~~i~l~~~i~~~lg~ye~~~~~~s------~---------~~~~~~s~--~ 357 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP------VLIQLRSVIFSHLGYYEQAYQDIS------D---------VEKIIGTT--D 357 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHhhhHHHHHHHhh------c---------hhhhhcCC--c
Confidence 34599999999999999999997 666778889999999999988771 1 12222211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
.+..-+-.....+|++++|...-.-.+...-+++++..--+......|-+++|...+++.+.++|
T Consensus 358 -~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 358 -STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred -hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 11111222344555666665555555544444444444444444455555666666666655554
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.56 E-value=0.3 Score=41.85 Aligned_cols=74 Identities=9% Similarity=-0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~--~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-...|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 445688888888888888888888888888888888888888877654 45555566666666665544444443
No 309
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.41 E-value=0.14 Score=57.01 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=78.2
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.|......|+...|+..+ ..++-..|... ....++|.+....|-..+|-..+.+++.++..
T Consensus 613 aglywr~~gn~~~a~~cl------------------~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACL------------------QRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS 674 (886)
T ss_pred ccceeeecCCcHHHHHHH------------------HHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence 344445678888888888 77777777554 34678888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+-.++.+|+.+..+.+.+.|++.++++++.+|++
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 88888888999998999999999999999888887
No 310
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.39 E-value=0.12 Score=53.10 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+-.+.|.-..+.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+ ++..+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 334556667789999999999999999999999999999999999999999999999999999999 777666543
No 311
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.34 E-value=0.52 Score=47.49 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHh----CC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 488 LNCPEAAMRSLQLARQH----AA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~----~p---~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
...+++|++.|.-|+-. .. .-+..+..+||+|...|+.+.....+++|+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~---------------------- 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF---------------------- 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----------------------
Confidence 34566777776666532 11 22566788999999999977777777776632
Q ss_pred cchhhhhHHHHHHhhhHh---hccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 561 CSSTVVSLLEDALKCPSD---RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~---~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+++|...-.. .+....+.+.+|.+..+.|++++|..+|.+.+..
T Consensus 148 --------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 148 --------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred --------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 1111111111 1222567888999999999999999999999874
No 312
>PRK10941 hypothetical protein; Provisional
Probab=94.25 E-value=0.46 Score=49.53 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+.++-.++.+.++++.|+... +.++..+|+++.-+...|.+|.++|++..|...++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~------------------e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRAS------------------EALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 334445555566666666555 66666666666666666666666666666666666666666
Q ss_pred CCcHHHHH
Q 004336 506 ASDHERLV 513 (760)
Q Consensus 506 p~~~~a~~ 513 (760)
|+++.+..
T Consensus 246 P~dp~a~~ 253 (269)
T PRK10941 246 PEDPISEM 253 (269)
T ss_pred CCchhHHH
Confidence 66555543
No 313
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.01 E-value=0.18 Score=50.03 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=68.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCC
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSS 560 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~ 560 (760)
....+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+ -+-..++..-....-...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~p 82 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKP 82 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCC
Confidence 345677899999999999999999999999999999999999999999999999999988 333333322221111111
Q ss_pred cchhhhhHHHHHHhhhHhh
Q 004336 561 CSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~ 579 (760)
.+..+...++.-.+.|...
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~ 101 (287)
T COG4976 83 PSAYVETLFDQYAERFDHI 101 (287)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 2233445555555555444
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.99 E-value=1.4 Score=44.86 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=110.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 488 LNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~----~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
..++++|+..|++.+++.+... .++-.+-.+++.+|++++-+..|.+.+..-.+. ..-.- +
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-------VTrNy-------S- 104 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-------VTRNY-------S- 104 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-------Hhccc-------c-
Confidence 4589999999999999988754 456677889999999999999999887431110 00000 0
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h-cch----HHHHHHHHHHHHcCCHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK---I-RHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~---~-~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
....+.+-..-....+.+--...|+..+. - .+. ..-..||.+|+..|++..-.
T Consensus 105 -------------------EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 105 -------------------EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred -------------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHH
Confidence 00111111111122233333344444333 1 111 23346788888888887666
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
+.++++-.... .+....+..+..+ ..++|..-...|..+++..+-...|++++.+....+.-
T Consensus 166 KIlkqLh~SCq--------------~edGedD~kKGtQ----LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 166 KILKQLHQSCQ--------------TEDGEDDQKKGTQ----LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HHHHHHHHHhc--------------cccCchhhhccch----hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 66655433322 1111111111111 11233333456666777777777778887765443321
Q ss_pred H-------HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 716 H-------LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 716 ~-------l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
. .++..+.+.|++++|-..|-.|.+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 225666666788888777777765
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.78 E-value=0.49 Score=40.55 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 494 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 494 Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+..+++.++.+|++.++.+.+|..+...|++++|++.+-++++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567889999999999999999999999999999999999999998877
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.77 E-value=0.97 Score=42.89 Aligned_cols=84 Identities=13% Similarity=-0.041 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+..+....++.+.+..++ .-+-.+.|..+.+-..-|.++...|++.+|+..|+.+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL------------------~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALL------------------DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHH------------------HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44555555556666666776666 555556678888777788888888888888888888777
Q ss_pred hCCCcHHHHHHHHHHHHHCCCH
Q 004336 504 HAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..|..+.+.-.++.+++..|+.
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCCh
Confidence 7777777777777777777764
No 317
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.69 E-value=0.21 Score=51.45 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=40.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-..+.|+.++|...|+.|+++.|+++.+.+. +.+.+...+.-+|-.+|-+||.++|.|.+++-
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3445666677777777777777766666544 55555556666666677777777776666653
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.56 E-value=3.4 Score=37.00 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=66.7
Q ss_pred HHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhc----------ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 583 GQALNNLG--SVYVDCGQLDLAADCYSNALKIR----------HT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 583 ~~a~~~Lg--~~y~~~g~~~eA~~~~~~Al~~~----------~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+.+|..|+ .-.+..|-|++|...+++|.+.. +. -.+..|+.++...|+|++++..-.+++
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL---- 82 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL---- 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----
Confidence 44555443 44566799999999999999842 22 356788999999999988877665443
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 647 NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYP----YRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 647 ~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~----~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.+|++--+++.+.... .++.|..+...|+.++|+..|+.+-+
T Consensus 83 -------------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 83 -------------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3333333444443333 35678888888999999988888764
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.48 E-value=6 Score=42.60 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 496 RSLQLARQHAASDHERLVYEGWILYDTSH------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 496 ~~l~kal~~~p~~~~a~~~Lg~i~~~~g~------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
.-|.+.+..+|.+.++|..+....-..-. .+.-+.+|++|++.+|++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--------------------- 64 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--------------------- 64 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC---------------------
Confidence 45778888999999999988776554432 355667778888777766
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcC-----CHHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKN-----NKTTAYEEM 638 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g-----~~~~A~~~l 638 (760)
...+..+-....+..+.++..+-+++++..+|.......+.+-+.++ .+......|
T Consensus 65 -------------------~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 65 -------------------ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred -------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 22333333333344455666666777777655533333333333333 455666666
Q ss_pred HHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 639 TKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
.+++..-.....-. . ....... .........+..+...+.+.|..+.|+..++..++++
T Consensus 126 ~~~l~~L~~~~~~~--~----~~~~~~~------~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGR--M----TSHPDLP------ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccc--c----ccccchh------hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66554432100000 0 0000000 0000112344556667788888899998888888764
No 320
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.38 E-value=5.7 Score=43.47 Aligned_cols=126 Identities=9% Similarity=-0.116 Sum_probs=80.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 501 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 501 al~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
.++.+|-..+++..++.++..+|+.+.|.+..++++-.-... ...+.. ..... ..+.. + --|...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~--~~~~~--~~g~~-----r-----L~~~~~ 97 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP--FRSNL--TSGNC-----R-----LDYRRP 97 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh--hhccc--ccCcc-----c-----cCCccc
Confidence 456789999999999999999999999999999998321110 000000 00000 00000 0 000000
Q ss_pred c-cH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 580 L-RK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 580 l-~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
. +. -.+.+.....+.+.|-+..|.++.+-.+.++|. .+++.+-....+.++++--++.++.
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 0 00 456666777888999999999999999997666 5666666666777888666666554
No 321
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.29 Score=46.66 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=68.3
Q ss_pred cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccC--------------------
Q 004336 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (760)
Q Consensus 189 ~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~-------------------- 248 (760)
+|+.|.+-+.+ |-.|.-.++|+...=.......|.|+ +|++.+|+.||+|++-=+-.
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 56677775544 55677777777532112222578998 69999999999999873310
Q ss_pred ----CCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 249 ----~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
.++..++.+|+-|||+|.+.+|.+.||...+..+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0567799999999999999999999999998766
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.26 E-value=0.14 Score=33.03 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
+++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.24 E-value=27 Score=43.00 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=89.7
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc----c---CHHHHHHHHhhhccccccCCcCcH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI----D---NWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~----g---~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++..+.|+.|+..|+++-...|+.. .|. +|.+..|.....+ | .+++|+.-+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 542 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRK--EGY-EAQFRLGITLLEKASEQGDPRDFTQALSEF--------------- 542 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcc--cch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHH---------------
Confidence 45567788899999999999999999875 333 6777777655332 2 234444444
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-----TSHCEEGLRKAEESI 536 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-----~g~~eeAl~~~~~al 536 (760)
+ -+...|.-+.-|...|.+|.++|++++-+++|..|++..|..+..-...-.+-+. ..+...|....--++
T Consensus 543 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 543 ---S-YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred ---H-HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2334477788899999999999999999999999999998877543222211111 123345556666666
Q ss_pred hhcCCh
Q 004336 537 QMKRSF 542 (760)
Q Consensus 537 ~l~p~~ 542 (760)
.+-|..
T Consensus 619 ~~~~~~ 624 (932)
T PRK13184 619 WIAPEK 624 (932)
T ss_pred HhCccc
Confidence 666654
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.11 E-value=0.42 Score=36.44 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
+|.+|..+.+.|+|++|.++.+.+++..|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34445555555555555555555555555554443
No 325
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.02 E-value=19 Score=40.63 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcc-CcHHHHHHHHhc-------CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKAR-NNASAYEKRSEY-------CDRELTRADLEMVTQLDPLRV-YPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~-~~~~~~~~~~~~-------~~~~~A~~~l~kal~l~p~~~-~~~~~La~~~~~~g~~~eAi~~ 701 (760)
.+++...|+++++..- .+..+|...+.+ +..+.....+++++.+...++ -+|..+-..-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455566666554332 333344333322 124445566666665433222 2333333444444557888899
Q ss_pred HHHHHHcCCCcHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 702 LSRAIAFKADLHLLHLRAA--FHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~a~--~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
|.++-+..-....++..+. =|...+|..-|.+.|+-.|...++.++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv 438 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYV 438 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHH
Confidence 9998876555444443322 23455999999999999999999998753
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.01 E-value=0.13 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.++..+|.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46789999999999999999999999998875
No 327
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.95 E-value=4.5 Score=36.20 Aligned_cols=101 Identities=17% Similarity=0.020 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~------------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
|.-.+.-|-|++|...++++.+..-. ++-.+..|+..+..+|+|++++...++++. .++..|
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~------YFNRRG 89 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR------YFNRRG 89 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH------HHHHH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------HHhhcc
Confidence 34556779999999999999876422 234577899999999999999998888873 222223
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
....+. |.+= ..+.++.|..+...|+.++|+..|+.+-+
T Consensus 90 EL~qde-----------GklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 90 ELHQDE-----------GKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -TTSTH-----------HHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccccc-----------chhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222221 1000 34556778888889999999999988865
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.90 E-value=14 Score=38.84 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhC-CCCc-chhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 393 RLLRKEYDEAEHLFEAILTLS-PDYR-MFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~-P~~~-~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
...+|+++.|..++.++-... .-.+ ....-...++..|.-....+ +++.|..|+ +++.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL------------------~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWL------------------QRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH------------------HHHHH
Confidence 356789999999999886544 2121 11223356788898888999 999999999 44443
Q ss_pred h----------CCCc----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 470 S----------DAPK----GVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 470 ~----------~p~~----~~~~~~la~~~~~~g~~~---~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
. .|+. ...+..++.+|...+.++ +|....+.+-...|+.+..+..--.+....++.+++.+.+
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 3 1221 345567788888877765 3444555555566777777655555555588899998888
Q ss_pred HHHHhhc
Q 004336 533 EESIQMK 539 (760)
Q Consensus 533 ~~al~l~ 539 (760)
.+++..-
T Consensus 145 ~~mi~~~ 151 (278)
T PF08631_consen 145 MRMIRSV 151 (278)
T ss_pred HHHHHhc
Confidence 8888653
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.89 E-value=3.7 Score=39.01 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.+.....+-...++.+++...+....-+.|+.++....-|+++...|++.+|+..++.+....|.. .+--.++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 455566677788899999999999999999999999999999999999999999999998888877 4444555555443
No 330
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.74 E-value=1.1 Score=49.67 Aligned_cols=92 Identities=14% Similarity=-0.031 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF--HEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~--~~~~g~~~~A~~~~~~aL~l 741 (760)
-...|+.|+...+.+...|.....-..+.+.+.+--..|.+++..+|+++.+|.-+.. +.-.-+.+.|...+.++|..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3556777777777777777776655555666777777888888888888877755322 23323477788888888888
Q ss_pred CCCcHHHHHHHHHh
Q 004336 742 DPNDQEMLELHSRV 755 (760)
Q Consensus 742 ~P~~~~~l~~~~r~ 755 (760)
+|+.+..+.-|-|+
T Consensus 170 npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRM 183 (568)
T ss_pred CCCChHHHHHHHHH
Confidence 88888776665554
No 331
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.72 E-value=0.86 Score=40.29 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=73.2
Q ss_pred HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcC-----------CHHHHH
Q 004336 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLN-----------CPEAAM 495 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g-----------~~~~Ai 495 (760)
+.-+...|++-+|++++ +..+..++++. ..+...|.++.++. -.-.|+
T Consensus 3 A~~~~~rGnhiKAL~ii------------------ed~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sv 64 (111)
T PF04781_consen 3 AKDYFARGNHIKALEII------------------EDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSV 64 (111)
T ss_pred HHHHHHccCHHHHHHHH------------------HHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhH
Confidence 45567888999999888 88888887765 56677788776543 233688
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 496 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 496 ~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++|.++..+.|..+..++.+|.-+-....|+++....++++.+
T Consensus 65 e~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 65 ECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999998888888889999988888865
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.68 E-value=33 Score=45.39 Aligned_cols=307 Identities=14% Similarity=0.010 Sum_probs=160.0
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
++.+-+..|.|..|.-++++- ...+... .....-+..+-.+|...++++.-.... ...
T Consensus 1389 La~aSfrc~~y~RalmylEs~-~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~-------------------~~r 1446 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH-RSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVS-------------------ARR 1446 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHH-------------------HHh
Confidence 344445555888888888875 1111111 111122233333665666555443333 111
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
..+| .....-......|++..|..+|+++++..|+....+...-...+..|++...+...+-.....++. .-++.
T Consensus 1447 ~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s 1522 (2382)
T KOG0890|consen 1447 FADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNS 1522 (2382)
T ss_pred hcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHH
Confidence 1111 233444566778999999999999999999988777777777888899999988777666555554 44444
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhh-ccHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhhcchHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDL-----AADCYSNALKIRHTRAHQGL 621 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~-l~~~~a~~~Lg~~y~~~g~~~e-----A~~~~~~Al~~~~~~a~~~L 621 (760)
++.-.+.. .+.++....+..+. .. ......+|.+.....+-+. +++--+..+ +.+ +
T Consensus 1523 ~~~eaaW~----------l~qwD~~e~~l~~~n~e-~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~------l 1584 (2382)
T KOG0890|consen 1523 LGVEAAWR----------LSQWDLLESYLSDRNIE-YWSVESIGKLLLRNKKKDEIATLDLIENSRELV-IEN------L 1584 (2382)
T ss_pred HHHHHHhh----------hcchhhhhhhhhccccc-chhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-hhh------H
Confidence 43322211 02333332222211 00 0011114544443332221 111111110 111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------------c-c-------CcHHHHHHH--HhcCCHHHHHHHHHHHHh------
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKK------------A-R-------NNASAYEKR--SEYCDRELTRADLEMVTQ------ 673 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~------------~-~-------~~~~~~~~~--~~~~~~~~A~~~l~kal~------ 673 (760)
..+ ...|.+..+++.+-++.-. . + .+.|.+... ..+.+..+-+-.++++.-
T Consensus 1585 sa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~ 1663 (2382)
T KOG0890|consen 1585 SAC-SIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRS 1663 (2382)
T ss_pred HHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccc
Confidence 000 0111222222222221111 0 1 112222221 112233344444444321
Q ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 674 -LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 674 -l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
.+......|...|.+-...|+++-|..++-+|.+..+ +.++ -+|..+.+.|+-..|+..+++.++.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 1334567899999999999999999999999988763 3344 34666666699999999999999643
No 333
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.59 E-value=0.34 Score=38.34 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y 243 (760)
|+|.. +|++|.+.|.+. -.|.-++.||.+ +.+... .|.|+ +|+..+|+.|++|.+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~-~~~~~~-~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLED-LGDEDE-PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHC-TCCCGT-EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhh-hccccc-ccccC--ccCHHHHHHHHHHHH
Confidence 55654 678898877654 589999999975 333332 79998 799999999999975
No 334
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.43 E-value=24 Score=40.34 Aligned_cols=91 Identities=21% Similarity=0.023 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHH-HHHHHHcCCHHHHHHHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLHLR-AAFHEHTGDVLGALRDC 735 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~-~p~~~~~~l~-a~~~~~~g~~~~A~~~~ 735 (760)
.|+++...-.+++++---......|...+......|+.+-|...+.++.++ .|..+.+++. +.+-...|++..|...+
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l 389 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL 389 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence 477778888888887777777788888888888888888888877777765 3556667755 77888888999999999
Q ss_pred HHHHhcCCCcHHH
Q 004336 736 RAALSVDPNDQEM 748 (760)
Q Consensus 736 ~~aL~l~P~~~~~ 748 (760)
++..+--|+.-++
T Consensus 390 q~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 390 QRIESEYPGLVEV 402 (577)
T ss_pred HHHHhhCCchhhh
Confidence 9888766765543
No 335
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.39 E-value=14 Score=40.56 Aligned_cols=233 Identities=14% Similarity=0.001 Sum_probs=129.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++.-.|-.++.|+.....+...++-+.|+...++++...|. ....++..|...++.++--..|++.++-- .
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---~ 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---K 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---H
Confidence 57777778889999999999999999999999999988877776 66677777777777777777777665310 0
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQ 619 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~ 619 (760)
..+..+..-... ..-+..+...+..-+...+ .-++.-+-..-.+..-.+.|...|-++-+.. |. ++.
T Consensus 365 r~ys~~~s~~~s--------~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-vyi 435 (660)
T COG5107 365 RKYSMGESESAS--------KVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-VYI 435 (660)
T ss_pred HHHhhhhhhhhc--------cccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-eee
Confidence 000000000000 0001111111111000011 3344444444445556777888887777643 22 222
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH----HHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHc
Q 004336 620 GLA-RVHFLKNNKTTAYEEMTKLIKKARNNASAYEK----RSEYCDRELTRADLEMVTQLDPLR--VYPYRYRAAVLMDS 692 (760)
Q Consensus 620 ~La-~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~----~~~~~~~~~A~~~l~kal~l~p~~--~~~~~~La~~~~~~ 692 (760)
.-| .-|+..|++.-|...++-.+...|+.+..-+. +...++...|...|++++..-... ..+|..+-.--..-
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 222 23566788888888888877777765543222 223466666666666655432221 23333333333444
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 004336 693 HKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~p~ 711 (760)
|+...++..=++.....|.
T Consensus 516 G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 516 GSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred cchHHHHhHHHHHHHHcCc
Confidence 5555555544444444444
No 336
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.17 E-value=14 Score=38.99 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
.+....-+.+-....+..+..+-++.-..+++++|+.+.++..|+.- ..--..+|...++++++..... ++....
T Consensus 181 ~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~---yr~sqq 255 (556)
T KOG3807|consen 181 TDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETI---YRQSQQ 255 (556)
T ss_pred ccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHH---HhhHHH
Confidence 34444445555566677777778888888888888888888777653 2234567777777777543222 111111
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHF 626 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~ 626 (760)
...+ +...+|. ..+...- ..+-..++.+..++|+..+|++.|+...+..|. .++-+|...+.
T Consensus 256 ~qh~-----------~~~~da~--~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalL 322 (556)
T KOG3807|consen 256 CQHQ-----------SPQHEAQ--LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALL 322 (556)
T ss_pred Hhhh-----------ccchhhh--hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 1111 0000000 0000000 334445777777788888888888777665444 33444444444
Q ss_pred Hc
Q 004336 627 LK 628 (760)
Q Consensus 627 ~~ 628 (760)
..
T Consensus 323 E~ 324 (556)
T KOG3807|consen 323 EL 324 (556)
T ss_pred HH
Confidence 33
No 337
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=16 Score=37.42 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=109.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc-cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~-g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+.....-..|..+-+.++.++|.+- ..|+..-.+...+ .+..+-+.|+ ...++.+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnY------TVW~yRr~iL~~l~~dL~~El~~l------------------~eI~e~n 108 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANY------TVWQYRRVILRHLMSDLNKELEYL------------------DEIIEDN 108 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHhHHHHHHHHHHH------------------HHHHHhC
Confidence 3344566889999999999999995 6666655555443 3456666777 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPE-AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~-~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
|.+-.+|...-.+....|++. .-++..+.++..+..+-.+|...-++...-+.++.-+.+..+.++.+-.+ .+|...-
T Consensus 109 pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 109 PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 999999999999999999988 88899999999999999999999999999999999999999999887655 6665543
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.95 E-value=5 Score=45.13 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 486 LRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 486 ~~~g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
.-.|+++++.+..+.. ++-|.- .+-...++..+...|..+.|+..-+ +.+..|.++.-+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeLAl~l------------ 331 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFELALQL------------ 331 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHHHC------------
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHHHHhc------------
Confidence 4467788876666421 112222 3345667777888888888866532 223344443222
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
|+++.|.+.....-. ...|..||...+.+|+++-|..+|+++- -+..|..+|...|+.+.-.++.+.+
T Consensus 332 --g~L~~A~~~a~~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 332 --GNLDIALEIAKELDD-PEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp --T-HHHHHHHCCCCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 667777766655433 5689999999999999999999999873 3456777888888875544444433
No 339
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=20 Score=38.14 Aligned_cols=266 Identities=16% Similarity=0.093 Sum_probs=150.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHH
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQH--AASD--------HERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAF 545 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~--------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~ 545 (760)
+..+......++.++++..|.+.+.. .|.. -.....+|.+|...|+.++=....+..-.. -+...+-
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455566677788999999888874 2222 134678999999999988766655544322 1111000
Q ss_pred HHHHHHHHcc-cCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch--
Q 004336 546 FLKAYALADS-SQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-- 615 (760)
Q Consensus 546 ~~la~~l~~~-~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-- 615 (760)
.. ...+.+. ..-+......++...+.++...+.-+. ...-..+...|.+.++|.+|+......++. +..
T Consensus 88 Kl-vR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KL-VRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HH-HHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00 0111111 111223334455555555554443222 344556888999999999999988887762 211
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----Cc-HHHHHHH-----HhcCCHHHHHHHHHHHHhhCC---CCh
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-----NN-ASAYEKR-----SEYCDRELTRADLEMVTQLDP---LRV 679 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-----~~-~~~~~~~-----~~~~~~~~A~~~l~kal~l~p---~~~ 679 (760)
+++..-..+|+...+..+|...+..+-.... +. ....... +.-.++.-|..+|-+|++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 6666778889999999999988887654332 11 1111111 111467788888888876431 112
Q ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HH--HHHHH--HcCCHHHHHHHHHHHHhcCCCc
Q 004336 680 Y---PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LR--AAFHE--HTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 680 ~---~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~--a~~~~--~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
. .+.++-.+-...+..++--..+..-..+.-+.+.+. ++ +..+. .+.+|+.|+..|+.=|..||--
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 2 333444444556666665444433222222222222 22 33332 2367899999999888877743
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.70 E-value=4.3 Score=38.02 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=78.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 559 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~ 559 (760)
....-...++++++...+....-+.|+.++....-|+++...|++.+|+..+++..+..+.. .+.-.++.++...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al---- 91 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK---- 91 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc----
Confidence 33444558999999999999999999999999999999999999999999999999887776 4555556666554
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
+ ...|...+.-....+...+|+...+...
T Consensus 92 -------~---------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 92 -------G---------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -------C---------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1 2355556666666666666666555443
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.47 E-value=28 Score=39.07 Aligned_cols=239 Identities=18% Similarity=0.107 Sum_probs=126.9
Q ss_pred hHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhhccccchhhHHHHhccchHH
Q 004336 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFS 346 (760)
Q Consensus 267 ~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~lL~~~~~~~r~~~~~~~~~~ 346 (760)
.+.|+..|++||+.--.+.. ++ .+..-.......|-.+|+-.++..|.+...+. +++.+| .|+...|. +-.
T Consensus 30 ~~~~~~ic~~hl~~~k~si~-~l-yisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c-----~~~l~~~e-~km 100 (711)
T COG1747 30 LDVLKGICDEHLAHSKNSII-AL-YISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLC-----TRVLEYGE-SKM 100 (711)
T ss_pred HHHHHHHHHHHHHHhhhhhH-HH-HHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHH-----HHHHHhcc-hHH
Confidence 56788999999986433322 22 12222223334555666666666666655432 333444 23333333 333
Q ss_pred HHHHhhHhhcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhC-CCCcchhchHHH
Q 004336 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLS-PDYRMFEGRVAA 425 (760)
Q Consensus 347 l~~~l~~v~~~~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~-P~~~~~~~~~~a 425 (760)
.|+-+.++.++. .++....+-+++++.. ++.+..-..++. ++..++-+.+..+|.+++... |...+..-+ +.
T Consensus 101 al~el~q~y~en--~n~~l~~lWer~ve~d---fnDvv~~ReLa~-~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~-ev 173 (711)
T COG1747 101 ALLELLQCYKEN--GNEQLYSLWERLVEYD---FNDVVIGRELAD-KYEKIKKSKAAEFFGKALYRFIPRRQNAAIK-EV 173 (711)
T ss_pred HHHHHHHHHHhc--CchhhHHHHHHHHHhc---chhHHHHHHHHH-HHHHhchhhHHHHHHHHHHHhcchhhhhhHH-HH
Confidence 456666776655 3445566677777663 333333333442 333468999999999988654 322100000 11
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--CCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQ-SLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--p~~~~~~~~l-a~~~~~~g~~~~Ai~~l~kal 502 (760)
|.-+-.+ -..+.+.-... .+-++.. ...+...+.. -.-|....++++|++.+...+
T Consensus 174 WeKL~~~--i~dD~D~fl~l-------------------~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 174 WEKLPEL--IGDDKDFFLRL-------------------QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHHHHh--ccccHHHHHHH-------------------HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 1111000 01111111111 1111111 1222222222 245667889999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhhcCCh
Q 004336 503 QHAASDHERLVYEGWILYD--------------------TSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~--------------------~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++..+..+.-++-.-+.. -.++-+|+..|++.+..+..+
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9988887777666555554 567788888888887765443
No 342
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.29 E-value=2.4 Score=37.56 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+..++.+|.-+....-|+++..--++++.
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555555554444455555555555544
No 343
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.26 E-value=3.3 Score=41.71 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhC--C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLA-------RQHA--A----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~ka-------l~~~--p----~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+.++.++|-+|...|+.+.....+++| ++.. | +.....+.+|.+.+..|++++|+.+|.+++....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 567778888888888866555555554 4332 2 2346788899999999999999999999997643
No 344
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.12 E-value=0.36 Score=48.03 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
.++.+.|.+.|.+++++-|.....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 35556666666666666666666666666666666666666666666666666554
No 345
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.12 E-value=3.3 Score=51.05 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHH------HHHHHH-hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccc
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEH------LFEAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~------~~~~aL-~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~ 454 (760)
.+.-..+.|......|.+.+|.+ .+.... .+.|+. ...+..++.++.+.|+.++|+.+-+..-.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~------~~~~~~La~l~~~~~d~~~Ai~~~~ka~i--- 1001 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEV------ASKYRSLAKLSNRLGDNQEAIAQQRKACI--- 1001 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhH------HHHHHHHHHHHhhhcchHHHHHhccccee---
Confidence 45556677878888888988888 444322 234455 37889999999999999999987722111
Q ss_pred cCCcCcHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCH
Q 004336 455 VDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 455 ~~d~~sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..++.+..+ |+....+.+++......++...|+..+.+++.+ .|.-+....+++.++...+++
T Consensus 1002 --------i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1002 --------ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred --------eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 125555555 667888899999999999999999999998865 466667778899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 004336 526 EEGLRKAEESIQMK 539 (760)
Q Consensus 526 eeAl~~~~~al~l~ 539 (760)
+.|+.+.+.|.+.+
T Consensus 1074 d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1074 DTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.11 E-value=8.2 Score=43.45 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=64.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+.+|+++++..+.+.. ++-|.-+ ..-...++..+.+.|.++.|+... .
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~-----~~~~~~i~~fL~~~G~~e~AL~~~--------------------------~ 319 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIP-----KDQGQSIARFLEKKGYPELALQFV--------------------------T 319 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG-------HHHHHHHHHHHHHTT-HHHHHHHS--------------------------S
T ss_pred HHcCChhhhhhhhhhh-hhcccCC-----hhHHHHHHHHHHHCCCHHHHHhhc--------------------------C
Confidence 5567898887777522 2233333 133455667778888888888766 3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
++...+.+| .+.|+.+.|.+..+ ..++...|..||.....+|+++-|...|+++-
T Consensus 320 D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 320 DPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred ChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 455555554 67888888876543 34567899999999999999999988888763
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.05 E-value=0.45 Score=33.57 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
.+++++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56777888888888888888888887763
No 348
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.93 E-value=3.9 Score=39.86 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
..++..+|..|.+.|+.+.|++.|.++.+..... .+.+..+-.+.+..|++........++-......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~--------- 106 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG--------- 106 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc---------
Confidence 3567789999999999999999999988765433 3567778888889999999988888876542221
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+.++ .+.......|..++..++|.+|...|-.+..
T Consensus 107 ---------------~d~~----------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 ---------------GDWE----------RRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ---------------chHH----------HHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 0000 0123334456677778999999998877654
No 349
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.84 E-value=2.8 Score=47.59 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=21.5
Q ss_pred hHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
+.|.+|....++..+- ..+|+..|..+.+..++++|.+.|.+|
T Consensus 787 ~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4445554444444222 445555555555555555555555444
No 350
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.81 E-value=14 Score=42.22 Aligned_cols=212 Identities=14% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQH--------------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~--------------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
|-.+|.-.+..=+++-|.+.|.+...+ +...++ -..++.++...|++.||.+.|.+.-.-+..-+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 444555555555666666666554321 111122 24578888889999999998876422111111
Q ss_pred H-----HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhh
Q 004336 544 A-----FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY------SNALKI 612 (760)
Q Consensus 544 a-----~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~------~~Al~~ 612 (760)
. .|..+.-+... ...+.......+-.+.....-+ + ..-+.++...|+.++|+... +-++++
T Consensus 667 myTDlRMFD~aQE~~~~----g~~~eKKmL~RKRA~WAr~~ke-P---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGS----GDPKEKKMLIRKRADWARNIKE-P---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred HHHHHHHHHHHHHHhhc----CChHHHHHHHHHHHHHhhhcCC-c---HHHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 1 11122222221 0000000000000000000001 1 12356667777777776543 222222
Q ss_pred ----cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 613 ----RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 613 ----~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
+.. +.+..++.-+.....+.-|.+.|.++- +...+-......+++++|...-++.-+.-|+ .|+-.|
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----D~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pya 811 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG----DLKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYA 811 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc----cHHHHhhheeecccchHhHhhhhhCcccccc---ccchHH
Confidence 111 444444544455555555555554321 1112222222346667766655554443333 344446
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004336 687 AVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~ka 705 (760)
.-+....+++||...|.+|
T Consensus 812 qwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHh
Confidence 6666666666666666554
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.37 E-value=0.59 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++.++|.+|..+|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567788888888888888888888888653
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.24 E-value=18 Score=34.83 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~--~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.-+.-+.+.|..++|+..|...-+-+-.. .-+.+..|.+..+.|+..+|+..|.++-.-.|..
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 34455567788889998888766554332 3456777889999999999999999887655443
No 353
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.75 E-value=22 Score=37.54 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=75.2
Q ss_pred ccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
|........+.....+++++|+-+.++..++.- +.--..+|.+.|+++++... .-++..+.....|.-.+|.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da~-- 266 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEAQ-- 266 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhhh--
Confidence 334344455666788899999988888887753 33346678888888887542 2222233333333333331
Q ss_pred HHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------HHHHHHHHHHHHHcCCHHHHH
Q 004336 532 AEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAA 603 (760)
Q Consensus 532 ~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------~~a~~~Lg~~y~~~g~~~eA~ 603 (760)
.+.+.+. ..-..++.+...+ |++.+|.+.+.+..+. ..+.-++-..+....-|.+..
T Consensus 267 ----~rRDtnvl~YIKRRLAMCARkl-----------GrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 267 ----LRRDTNVLVYIKRRLAMCARKL-----------GRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred ----hhcccchhhHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3344667777777 9999999998887544 334444555555544444433
No 354
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=9.9 Score=36.53 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
.-+....|.+..+.|+...|+..|..+-+-.+. -+...-+.++...|.|++-....+.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL--------------- 158 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--------------- 158 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence 345556677777777777777777776653222 23334444555555554332222211
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 657 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 657 ~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+...+|-...+.-.||..-++.|++.+|...|.....-
T Consensus 159 --------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 159 --------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred --------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11223444455556677777788888888888777653
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=4.5 Score=37.83 Aligned_cols=83 Identities=13% Similarity=-0.051 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+..........++.+.+..++ ..+--+.|+.+.+..--|.++...|++.+|+..|+...+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lL------------------dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAML------------------DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 333444444567777777777 55666779999999999999999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHCCCHH
Q 004336 506 ASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+..+...-.++.+++.+|+.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 888888888999999988853
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.21 E-value=20 Score=36.87 Aligned_cols=210 Identities=12% Similarity=0.065 Sum_probs=114.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+...+.++|+.-|++++++.|+-. -||- .|+..+-.+..+++++++-...+... +.-+..++..+-.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKg-eWGF-KALKQmiKI~f~l~~~~eMm~~Y~ql-----------LTYIkSAVTrNyS 104 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKG-EWGF-KALKQMIKINFRLGNYKEMMERYKQL-----------LTYIKSAVTRNYS 104 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccc-hhHH-HHHHHHHHHHhccccHHHHHHHHHHH-----------HHHHHHHHhcccc
Confidence 344588999999999999998764 3443 67777778888999988877666100 0112333332211
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh--CCCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 474 KGVLYFRQSLLLL-RLNCPEAAMRSLQLARQH--AASDHERL----VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 474 ~~~~~~~la~~~~-~~g~~~~Ai~~l~kal~~--~p~~~~a~----~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
... .+--.-|. ...+.+--...|+..+.. +..+...| ..||.+|++.|.|..-.+.+++.-......
T Consensus 105 EKs--IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e---- 178 (440)
T KOG1464|consen 105 EKS--INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE---- 178 (440)
T ss_pred HHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc----
Confidence 111 11111111 111222222233322221 11222222 357888888888877766666554322111
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ch----HHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----HT----RAH 618 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~----~~----~a~ 618 (760)
.+. .. ..+..+-..+|..--.+|-.+++-.+-...|++++.+. |+ ...
T Consensus 179 --------dGe---------dD-------~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIR 234 (440)
T KOG1464|consen 179 --------DGE---------DD-------QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIR 234 (440)
T ss_pred --------cCc---------hh-------hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHH
Confidence 000 00 00001113445555667888888888888999998743 22 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
-.=|..+.+.|++++|-..|=.+.+.+.
T Consensus 235 ECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 235 ECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred HcCCccccccchHHHHHhHHHHHHhccc
Confidence 2335678888999988888877776655
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.95 E-value=1.8 Score=42.64 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS----DHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~----~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
++++..+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.+++.+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 67889999998887 67899999999999998654 5899999999999999999984
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=32 Score=35.70 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=110.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC--CCcchhchHHHHHHHHHHHHHccCHHHHHHHH-hhhccccccCCcCcHHHHHHHHH
Q 004336 393 RLLRKEYDEAEHLFEAILTLSP--DYRMFEGRVAASQLHMLVREHIDNWTIADCWL-QLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P--~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l-~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
....+++++|+..|.++|...- +.......-.+...++.+|...|++..-.... +..+.|.....+.....++..++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3455699999999999986621 11112222356778999999999886544333 12222333344455556666666
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM----- 538 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l----- 538 (760)
..|..++.+ +.-+..+...++..... ...-..+..++++.|+|.+|+......+.-
T Consensus 93 kf~~~~dsl-------------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D 159 (421)
T COG5159 93 KFPYSSDSL-------------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD 159 (421)
T ss_pred hcCCCCccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc
Confidence 655443322 22222222222211111 122245678899999999999988777642
Q ss_pred -cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 539 -KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 539 -~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
.|+. ..+..-..+|... .+.......+..|........-| ++.-..-|....+..+|.-|-.+|-++++
T Consensus 160 DK~~Li~vhllESKvyh~i----rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 160 DKINLITVHLLESKVYHEI----RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred CccceeehhhhhHHHHHHH----HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 1222 4555555555544 00111112222222222222222 33333346777888999999999999998
No 359
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.12 E-value=0.52 Score=48.33 Aligned_cols=86 Identities=9% Similarity=0.170 Sum_probs=60.5
Q ss_pred eEEEEecCeEeehhHHHHhcCCH-HHHhhccCCCC---CCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~---e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~l 258 (760)
-|++.+++..|..-+.+|-+.-. -.-.||.+++. -..+.+.++-+ ||+...+++|+||--||.|.--+.=.|-||
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 35667777778877777765432 23457777652 23445778875 999999999999999999963333457777
Q ss_pred HHHHhhhChHh
Q 004336 259 LIFANKFCCER 269 (760)
Q Consensus 259 l~~a~~~~~~~ 269 (760)
-++.+++|+++
T Consensus 176 rEACDYLlipF 186 (438)
T KOG3840|consen 176 REACDYLLVPF 186 (438)
T ss_pred HhhcceEEeec
Confidence 77777777653
No 360
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.93 E-value=4.4 Score=50.04 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=97.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+-...|+.+..+..++.++.+.|++++|+..-+++.-+ .|+....+.+++...+..++...|+..+.++..
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 444566888888888888888888888888877766533 244556677777777777777777777777665
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
+.--. +. +.....+....+++.++...++++.|+.+.+.|++....
T Consensus 1044 l~~Ls---------~g-----------------------e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1044 LKLLS---------SG-----------------------EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred hhccc---------cC-----------------------CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 42100 00 000111566678888888889999999999999884222
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 616 --------RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 616 --------~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
..+..+++++...+++..|....+....+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 45555666666666666666655544443
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.66 E-value=3.1 Score=35.83 Aligned_cols=59 Identities=24% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~---------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
...+.|++.+|++.+.+.++.... ...+..++|.++...|++++|+..+++++++-...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999998888765321 23567889999999999999999999999875443
No 362
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=16 Score=41.68 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhcCC
Q 004336 465 YQMLESDAPKGVLYFR--QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE-SIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~--la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~-al~l~p~ 541 (760)
...+..+|.++..... ++..+...+....+.-.+...+..+|.+..+..+||......|....++..+.+ +....|+
T Consensus 55 ~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 55 LLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPD 134 (620)
T ss_pred HccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 3344456666665433 577888888888899999999999999999999999988887777776666555 7777777
Q ss_pred h
Q 004336 542 F 542 (760)
Q Consensus 542 ~ 542 (760)
+
T Consensus 135 ~ 135 (620)
T COG3914 135 N 135 (620)
T ss_pred h
Confidence 7
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.54 E-value=6.4 Score=43.81 Aligned_cols=79 Identities=4% Similarity=-0.025 Sum_probs=61.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhcCCh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~-~eeAl~~~~~al~l~p~~ 542 (760)
|+.++...+.+...|.+......+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++++.+|+.
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 3677777777888888877777777778888888888888888888888877766655554 888888888888888877
No 364
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=30 Score=39.11 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcc
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI---------RHTRAHQGLARVHFLKNN-KTTAYEEMTKLIKKAR 646 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------~~~~a~~~La~~~~~~g~-~~~A~~~l~~al~~~~ 646 (760)
.--+..+|.++...|+...|..+|...++. -++.+++.+|.++...|. .+++..++.++-+...
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 455677899999999999999999988851 123799999999999998 8899988888766553
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.91 E-value=4.5 Score=33.46 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY---EGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~---Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
....|.-++..++.++|+..++++++..++..+.+.. +..+|.+.|+|++++.+.-+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999998887765554 556788999999999887665544
No 366
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=9.7 Score=43.57 Aligned_cols=101 Identities=10% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.|+.|..++..- +|..++++|...+..-|.+.+-..-......+..+|....+.+.|.+++
T Consensus 357 LWn~A~~~F~~~-------~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~------------ 417 (872)
T KOG4814|consen 357 LWNTAKKLFKME-------KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY------------ 417 (872)
T ss_pred HHHhhHHHHHHH-------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH------------
Confidence 455555555555 9999999999999988877533333456778899999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
+.+-+.+|.++...+....+...-|.-++|+.+.......
T Consensus 418 ------~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 418 ------QEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ------HHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 8888899999988888888888999999999988877654
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.64 E-value=9 Score=35.24 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHh-hCCC-ChHHHHHHHHHHHHcC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ-LDPL-RVYPYRYRAAVLMDSH 693 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~-l~p~-~~~~~~~La~~~~~~g 693 (760)
...+++|.++....+. .+..+.+..++..++ -+|. .-...++||..+++.|
T Consensus 33 ~s~f~lAwaLV~S~~~---------------------------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk 85 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDT---------------------------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK 85 (149)
T ss_pred HHHHHHHHHHHcccch---------------------------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh
Confidence 5667777777766554 223455555666654 3343 3456788999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
+|+.|+.+.+..++..|++..+. +...+..+
T Consensus 86 eY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 86 EYSKSLRYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998665 44444433
No 368
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.47 E-value=1.4 Score=45.88 Aligned_cols=89 Identities=10% Similarity=-0.084 Sum_probs=69.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~--a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
.|.++....|+++..|...+.-..+.|.+.+--..+.++++.+|.+..+|.- +.-+...++++.+...+.++|.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445566678888888777766677778888888899999999999888844 33344558999999999999999999
Q ss_pred cHHHHHHHHHh
Q 004336 745 DQEMLELHSRV 755 (760)
Q Consensus 745 ~~~~l~~~~r~ 755 (760)
+|.++-.|-|+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99887666554
No 369
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.93 E-value=4.6 Score=41.73 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
+-..+.+.++++.|.... .+.+..+|.++.-+...|.+|.+.|.+.-|++.++..++..|++
T Consensus 187 lk~~~~~e~~~~~al~~~------------------~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 187 LKAALLRELQWELALRVA------------------ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHhhchHHHHHHH------------------HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 334455556666666655 66666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 004336 509 HERL 512 (760)
Q Consensus 509 ~~a~ 512 (760)
+.+-
T Consensus 249 ~~a~ 252 (269)
T COG2912 249 PIAE 252 (269)
T ss_pred hHHH
Confidence 5543
No 370
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=85.67 E-value=1.7 Score=36.14 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.8
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
++.+.+.+|+.+|+.|+++.|.+.|+..++..+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999998774
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=51 Score=34.33 Aligned_cols=266 Identities=13% Similarity=0.001 Sum_probs=138.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HH-HHHH
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA-FFLK 548 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~--------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a-~~~l 548 (760)
..+|+-..+.+++++|+..|.+.+..... ...+...++.+|...|++..--+.....-+...++ .+ -...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45666777889999999999999876322 12456789999999998865544443333221111 00 0001
Q ss_pred HHHHHc-ccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----c--c--hH
Q 004336 549 AYALAD-SSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----R--H--TR 616 (760)
Q Consensus 549 a~~l~~-~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~--~--~~ 616 (760)
-..+.+ ....+.+.+..+......++...+--+. ...-..+...+++.|+|.+|+......+.. + + ..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111111 1111122222333333333333322111 344556788899999999999988777652 1 1 16
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----cCcHHHHHH-HH-----hcCCHHHHHHHHHHHHhhCC---CChHHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA-----RNNASAYEK-RS-----EYCDRELTRADLEMVTQLDP---LRVYPY 682 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~-----~~~~~~~~~-~~-----~~~~~~~A~~~l~kal~l~p---~~~~~~ 682 (760)
++..-..+|+...+..++..-+..+-... |+.-.+-.. ++ .-.++.-|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 77777888999888888887777654432 211111111 10 11356677777777765422 223333
Q ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHcC-CCcHHHH-HH--HHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 004336 683 RYRAA---VLMDSHKENEAIAELSRAIAFK-ADLHLLH-LR--AAFHE--HTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 683 ~~La~---~~~~~g~~~eAi~~l~kal~~~-p~~~~~~-l~--a~~~~--~~g~~~~A~~~~~~aL~l~P~ 744 (760)
..+-. .-...+..++-...++.--.+. -++..+. ++ +..+. .+.+|..|+..|+.-+..+|-
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 33322 2233344444333332222222 1111222 22 22221 225678888888777766653
No 372
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.17 E-value=4.9 Score=49.16 Aligned_cols=85 Identities=20% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HH----HHHHHHc-CCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LR----AAFHEHT-GDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~----a~~~~~~-g~~~~A~~~~ 735 (760)
++|+..|++. .-.|.-+--|...|.+|.++|+++|-++.|.-|+...|+.+.+- ++ -.++... .+...|....
T Consensus 536 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (932)
T PRK13184 536 TQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFM 614 (932)
T ss_pred HHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544442 22344444455556677777777777777777777777766443 22 2233222 3334444555
Q ss_pred HHHHhcCCCcHH
Q 004336 736 RAALSVDPNDQE 747 (760)
Q Consensus 736 ~~aL~l~P~~~~ 747 (760)
--++..-|....
T Consensus 615 ~~~~~~~~~~~~ 626 (932)
T PRK13184 615 LLALWIAPEKIS 626 (932)
T ss_pred HHHHHhCccccc
Confidence 555566665543
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=4.4 Score=41.87 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
.++-.++...++++.|....++.+.++|+++.-+ =+|.+|.++|.+..|++.++..++.-|+++.+..+..++
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445566777777777777777777777766333 447777777777777777777777777777665544433
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.72 E-value=3.5 Score=45.28 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
-..+..++...|.++......+.++..+|+|+.|...+.-+-..-.....+...+-.-+...|++++|....+-.+...-
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 34468888889999999999999999999999998887665554444445566666777888999999888877775432
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
+.+-....+ ..+....+.++++....++.
T Consensus 389 e~~ei~~ia----------a~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 389 EDEEVLTVA----------AGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred CChhheeee----------cccHHHHhHHHHHHHHHHHH
Confidence 221001111 11233457777777777666
No 375
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=19 Score=41.02 Aligned_cols=119 Identities=12% Similarity=-0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l 481 (760)
++..+...+.++|.++.+. -+.. +.......+....+...+ ...+..+|++..+..++
T Consensus 50 ~~~a~~~~~~~~~~~~~ll---la~~-lsi~~~~~~~~~~~~~~~------------------~~~l~~~~~~~~~~~~L 107 (620)
T COG3914 50 AIYALLLGIAINDVNPELL---LAAF-LSILLAPLADSTLAFLAK------------------RIPLSVNPENCPAVQNL 107 (620)
T ss_pred HHHHHHccCccCCCCHHHH---HHHH-HHhhccccccchhHHHHH------------------hhhHhcCcccchHHHHH
Confidence 4555555555666665111 1111 455555555555555555 78888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQL-ARQHAASDHERLVYE------GWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~k-al~~~p~~~~a~~~L------g~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+......|....+...+.. +....|++......+ |......|+..++....+++..+.|.+
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 8887777777666666555 777788877665544 777888888888888888888888877
No 376
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=83.01 E-value=71 Score=34.19 Aligned_cols=261 Identities=11% Similarity=0.023 Sum_probs=133.9
Q ss_pred hcCCHHHHHHHHHHHHhh--CCCC--cchhchHHHHHHHHHHHHHccCHHHHHHHHh-hhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL--SPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQ-LYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l--~P~~--~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~-l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..+++++++..|..++.. .|.. ......-.+...+|.++.+.|+.++-..++. ....|.......+...++..++
T Consensus 16 ~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd 95 (411)
T KOG1463|consen 16 SVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVD 95 (411)
T ss_pred ccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344778888888888874 1222 1222333566778999999998876655441 1112222233333333344433
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----c
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM----K 539 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l----~ 539 (760)
..+.- -+..+.-+..+...++-.... ...-..+..+|++.++|.+|+......++- +
T Consensus 96 ~~~~~-------------~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 96 MFLKI-------------DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHccC-------------CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 32211 111112222222222211111 112245788899999999999888777642 2
Q ss_pred CCh---HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh-------ccH----HHHHHHHHHHHHHcCCHHHHHHH
Q 004336 540 RSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-------LRK----GQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 540 p~~---~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~-------l~~----~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
-.. +.+..-..++... .++.+|......+ .-| +..-..=|.++....+|.-|..+
T Consensus 163 DK~lLvev~llESK~y~~l-----------~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSY 231 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHAL-----------RNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSY 231 (411)
T ss_pred cccceeeehhhhhHHHHHH-----------hcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHH
Confidence 111 3343334444443 3344443333222 111 33333447777788999999999
Q ss_pred HHHHHhh----cc-h---HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhccCcHHHHHHHH------hcCCHHHHHHHHH
Q 004336 606 YSNALKI----RH-T---RAHQGLARVHFLKNNKTTAYEEMTK--LIKKARNNASAYEKRS------EYCDRELTRADLE 669 (760)
Q Consensus 606 ~~~Al~~----~~-~---~a~~~La~~~~~~g~~~~A~~~l~~--al~~~~~~~~~~~~~~------~~~~~~~A~~~l~ 669 (760)
|=+|++- +. . .++-.+-.+-...+..++-...+.. +++.......+....+ ...+++.|...|.
T Consensus 232 FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 232 FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 9999982 22 2 3444455555666766665444432 3333322222222221 1235667777777
Q ss_pred HHHhhCCCCh
Q 004336 670 MVTQLDPLRV 679 (760)
Q Consensus 670 kal~l~p~~~ 679 (760)
.-+..||--.
T Consensus 312 ~eL~~D~ivr 321 (411)
T KOG1463|consen 312 KELAEDPIVR 321 (411)
T ss_pred HHHhcChHHH
Confidence 7666666433
No 377
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=75 Score=36.35 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHhh--------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----c----------
Q 004336 596 CGQLDLAADCYSNALKI--------------RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----R---------- 646 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~--------------~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~-----~---------- 646 (760)
..-|++|...|.-|... .|...+..++.+...+|+.+-|.+..++++-.. |
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777776652 122677888888888888888888887755321 1
Q ss_pred ------CcHHHHHHHH-------hcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 004336 647 ------NNASAYEKRS-------EYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLM-DSHKENEAIAELSRA-----I 706 (760)
Q Consensus 647 ------~~~~~~~~~~-------~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~-~~g~~~eAi~~l~ka-----l 706 (760)
.+-..|..+. .-|=+.-|.+..+..+.++|. ++.....+..+|. +..+|.=-|+.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2333333332 235677888888888999998 8877666665554 334444444444333 2
Q ss_pred HcCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Q 004336 707 AFKADLHLLHLRAAFHEHTGD---VLGALRDCRAALSVDP 743 (760)
Q Consensus 707 ~~~p~~~~~~l~a~~~~~~g~---~~~A~~~~~~aL~l~P 743 (760)
..-|+...-.-.+.+|..... .+.|...+.+|+...|
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 334554433333666666443 6788899999998877
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.23 E-value=1.7 Score=27.62 Aligned_cols=23 Identities=13% Similarity=-0.007 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
No 379
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.03 E-value=4.4 Score=45.16 Aligned_cols=97 Identities=15% Similarity=-0.017 Sum_probs=72.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
|.--+..+....|+..|.+++...|. ..+.+.+.++.+.+-. |+.-.|+.+
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~---------------------------~d~~~AlrD 433 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR---------------------------GDSYLALRD 433 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc---------------------------ccHHHHHHh
Confidence 33334445567778888887775554 5555666666655433 455567778
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
...|++++|....+++.|+.++...+++.+|+.....+....|.+.
T Consensus 434 ch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 434 CHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 8889999999999999999999999999999999888777777544
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.02 E-value=17 Score=30.17 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=48.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.+......|.-++...+.++|+..++++|+..++.+ .+..++-.+..++...|++.+.+.+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777788899999999999999998865 33456666777888899999988877
No 381
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.91 E-value=90 Score=34.67 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---------------C
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---------------N 647 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~---------------~ 647 (760)
++.|+.........++-+.|+...+++....|. .+..++..|...++-++-..+|+++++.-. +
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDN 380 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccC
Confidence 667777777777888889998888888776554 566677777777776666666666443211 1
Q ss_pred cH----HHHHH-HHh--------------cCCHHHHHHHHHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 004336 648 NA----SAYEK-RSE--------------YCDRELTRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 648 ~~----~~~~~-~~~--------------~~~~~~A~~~l~kal~l~p~~~~~~~~La~-~~~~~g~~~eAi~~l~kal~ 707 (760)
+. ..... ..+ -.-.+.|...|.++-...-.....|..-|. -+...|++.-|-..|+-.+.
T Consensus 381 N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~ 460 (660)
T COG5107 381 NFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL 460 (660)
T ss_pred CccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH
Confidence 11 11111 100 011234555555554443223333333333 35667888888999998888
Q ss_pred cCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 708 FKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 708 ~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..|+.+.+... -.++...++-..|...|+++++.
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 88888866544 44555667888888888877653
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.83 E-value=1.2e+02 Score=36.06 Aligned_cols=153 Identities=9% Similarity=-0.054 Sum_probs=87.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc---ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---HHHHHHHhcC
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIR---HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---SAYEKRSEYC 659 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~---~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---~~~~~~~~~~ 659 (760)
++.......+.+.|...+.+..... .. .+...+|.-....+...+|...+..+.....+.. +-+......+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 3444455677788888887654422 11 3344444444444335566666665443322111 1111112346
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------C---CcH----
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-------------------A---DLH---- 713 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-------------------p---~~~---- 713 (760)
+++.....+..............+.+|.++...|+.++|...|+++.... + ...
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~ 406 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALT 406 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhc
Confidence 66666555555433333556777888998888999999999988875210 0 000
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 714 --LLHLRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 714 --~~~l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
...-++..+...|+...|...+..++..
T Consensus 407 ~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 407 QGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred cChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0012256666779999999988887765
No 383
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.44 E-value=5.7 Score=44.32 Aligned_cols=79 Identities=11% Similarity=-0.057 Sum_probs=70.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~---g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+.+++...|.....+-+.+.++++. |+.-.|+.....|+.++|....+++.|+.++...+++.+|+.....+....|
T Consensus 397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 3888888899999999999988875 5666788888899999999999999999999999999999999998888888
Q ss_pred Ch
Q 004336 541 SF 542 (760)
Q Consensus 541 ~~ 542 (760)
.+
T Consensus 477 td 478 (758)
T KOG1310|consen 477 TD 478 (758)
T ss_pred hh
Confidence 66
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.41 E-value=1.3e+02 Score=36.06 Aligned_cols=261 Identities=12% Similarity=-0.042 Sum_probs=141.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHh
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~---~~g~~eeAl~~~~~al~ 537 (760)
+..++.-+..++.+...+..|-.++...|++++-...-+++.++.|..+..|.....-.. ..+...++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 455777778888888889999999999999998888888888888888887766543322 34778888899999986
Q ss_pred hcCChHHHHHHHHHHHcccCC---CCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 538 MKRSFEAFFLKAYALADSSQD---SSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~---~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
-.-....|...+......... ....+.....+++|+......... ...+...-..|...-..++-+.++...+
T Consensus 179 dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 179 DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 433324444444443333221 112223333444444444333222 4455555566666666677777777776
Q ss_pred hhcch-----HHHHHHH--H-HHHHcCCHHHHHHHHHHHHHhccCc----HHHHHHHH-------hcCCHHHHHHHHHHH
Q 004336 611 KIRHT-----RAHQGLA--R-VHFLKNNKTTAYEEMTKLIKKARNN----ASAYEKRS-------EYCDRELTRADLEMV 671 (760)
Q Consensus 611 ~~~~~-----~a~~~La--~-~~~~~g~~~~A~~~l~~al~~~~~~----~~~~~~~~-------~~~~~~~A~~~l~ka 671 (760)
...-+ ..+.... . ......+++.|...+.+.+...... ...+.... ..|+.-.-...++++
T Consensus 259 ~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 259 KQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred hccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 63211 1222222 1 1122344444444444333222211 11111111 123333444556666
Q ss_pred HhhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVL-MDSHKENEAIAELSRAIAFKADLHLLHLRAAF 721 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~-~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~ 721 (760)
+.-.+.+...|...+... ...+-.+.+...+.+++...|-...++-++.+
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 666666655555544322 23333444555566666666666666644433
No 385
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.17 E-value=86 Score=38.95 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=25.7
Q ss_pred hHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
+.+.+|+..|.-..++ -..+...|..+...+.+++|.-.|+.+
T Consensus 922 ~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 922 GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 5556666666555333 455556666666667777666666554
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.76 E-value=1.1e+02 Score=35.02 Aligned_cols=128 Identities=14% Similarity=0.053 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhhCC-CCc-----chhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 397 KEYDEAEHLFEAILTLSP-DYR-----MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P-~~~-----~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
..|++|...|.-+....+ ++. .-.-.++.+..++.+...+|+.+.|..++..+-. .+.+++.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly-----------~~d~a~hp 320 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY-----------VFDRALHP 320 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH-----------HHHHHhcc
Confidence 356677777776654432 211 0001147888999999999999999887722111 12333331
Q ss_pred C--------------CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HCCCHHHHHHH
Q 004336 471 D--------------APKGV---LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILY-DTSHCEEGLRK 531 (760)
Q Consensus 471 ~--------------p~~~~---~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~-~~g~~eeAl~~ 531 (760)
. |.+-. +.++.-..+.+.|.+..|.++.+-.++++|. ++-+...+-.+|. ...+|+=-+..
T Consensus 321 ~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 321 NFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred ccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 1 33322 3344555677889999999999999999998 7776666655554 34445444444
Q ss_pred HHHH
Q 004336 532 AEES 535 (760)
Q Consensus 532 ~~~a 535 (760)
++..
T Consensus 401 ~~~~ 404 (665)
T KOG2422|consen 401 SNEP 404 (665)
T ss_pred HHHH
Confidence 4443
No 387
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.14 E-value=2.3 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
No 388
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.14 E-value=8 Score=40.45 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35577788999999999999999999999999999999999999999999999999999988653
No 389
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.44 E-value=12 Score=40.72 Aligned_cols=104 Identities=16% Similarity=0.014 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhC-CCCcchh--chHH--HHHHHHHHHHHccCHHHHHHHHhhhccccc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLS-PDYRMFE--GRVA--ASQLHMLVREHIDNWTIADCWLQLYDRWSS 454 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~-P~~~~~~--~~~~--a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~ 454 (760)
...|...|..+......|+|..|+++..+.-.+. |..+... ..+. .-.-+..+|...++.+.|+...
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~-------- 251 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS-------- 251 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH--------
Confidence 4556666776744455556666666665544333 2222110 0011 1234677888888888888888
Q ss_pred cCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 455 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 455 ~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
.+.+..+|....-+...|.++..+.+|.+|-+.+--+
T Consensus 252 ----------hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 252 ----------HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred ----------hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887765443
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.92 E-value=15 Score=37.88 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=61.2
Q ss_pred chhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCC
Q 004336 562 SSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNN 630 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~ 630 (760)
+...+..++.|...|...-.. ......+|..|+..|+|++|.++|+.+...-.. .++..+..++...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 345567888888888877333 667778999999999999999999999763211 677788889999999
Q ss_pred HHHHHHHHHHH
Q 004336 631 KTTAYEEMTKL 641 (760)
Q Consensus 631 ~~~A~~~l~~a 641 (760)
.+..+...-++
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88776655443
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=78.08 E-value=6.8 Score=27.20 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--HHHHHhhcC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRK--AEESIQMKR 540 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~--~~~al~l~p 540 (760)
+.++.+|-.++.+|++++|+.. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455566666666666666666 334444444
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.98 E-value=30 Score=29.66 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 433 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-----PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 433 ~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
..+.|++..|...+. ..+........ ....+..++|.++...|++++|+..+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~--------------~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALH--------------RYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHH--------------HHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457888999987771 11122222221 124567889999999999999999999999874
No 393
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.45 E-value=3.6 Score=29.01 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888764
No 394
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.43 E-value=1.4e+02 Score=34.09 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
+.......|.++...+..+..+...|+.+.|+..++..++ +.. .-.++.+|+++.-+.+|..|...+....+.+
T Consensus 256 Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 256 LKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred hHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 3455556677777777788888888887777777777665 221 2235567888888888888887777776553
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.10 E-value=6.6 Score=45.53 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHH---HCCCHHHHHHHHHHHHhhcCCh--
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILY---DTSHCEEGLRKAEESIQMKRSF-- 542 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~------a~~~Lg~i~~---~~g~~eeAl~~~~~al~l~p~~-- 542 (760)
.++...++-..|....+|+.-++..+..- .-|+..+ ..+..+.++- .-|+.++|+...-.+++.....
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 46667777788888888888777766543 3453221 1222333332 3578888888888877765433
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGL 621 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~L 621 (760)
+.+..-|.+|.+. .++.-|.+.+..+.|+.+|++|++..|. .+-.++
T Consensus 279 Dm~Cl~GRIYKDm--------------------------------F~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~ 326 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDM--------------------------------FIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINL 326 (1226)
T ss_pred ceeeeechhhhhh--------------------------------hhccCCcchhhHHHHHHHHHHHhccCchhhccccH
Confidence 4444445555443 1233344566778889999999988887 666777
Q ss_pred HHHHHHcCCHHHHHHHHHHH-HHhcc---------------CcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKL-IKKAR---------------NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYR 685 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~a-l~~~~---------------~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~L 685 (760)
+.++...|+.-+--..++++ +.+.. +.+.....-...+++.+|+..-++..++.|-.++.-..+
T Consensus 327 atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 327 ATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 77777777553333333321 11111 111111111223566666666666666666555444444
Q ss_pred HH
Q 004336 686 AA 687 (760)
Q Consensus 686 a~ 687 (760)
..
T Consensus 407 en 408 (1226)
T KOG4279|consen 407 EN 408 (1226)
T ss_pred HH
Confidence 33
No 396
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.98 E-value=4.3 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++..||.+....++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.39 E-value=30 Score=39.81 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=73.8
Q ss_pred HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
+.-..+..+|..+++|+ ...+..-|.+ +.....++.+|+.+.+.+.|.++++.|-+
T Consensus 361 A~~~F~~~~Y~~s~~~y------------------~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFY------------------KLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred hHHHHHHHHHHHHHHHH------------------HHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34445667788888888 5555544433 44566788899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+|.++-.....-.+....|.-++|+.........
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999988888888999999999999998887654
No 398
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=76.35 E-value=52 Score=36.83 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 717 LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 717 l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
+.|.-|...|+...|..+|.+++..
T Consensus 375 LAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 375 LAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4466666667777777777776654
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.29 E-value=65 Score=33.76 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al 642 (760)
...+...+..|...|.+.+|+++-++++..+|- ..+..+-.++...|+--.+...|++.-
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556678899999999999999999999887 788889999999999888888887643
No 400
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.18 E-value=9.1 Score=26.59 Aligned_cols=32 Identities=19% Similarity=-0.092 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHcCCC
Q 004336 680 YPYRYRAAVLMDSHKENEAIAE--LSRAIAFKAD 711 (760)
Q Consensus 680 ~~~~~La~~~~~~g~~~eAi~~--l~kal~~~p~ 711 (760)
+.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456677788888888888888 3355555543
No 401
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.97 E-value=2e+02 Score=34.27 Aligned_cols=138 Identities=13% Similarity=0.022 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH--hcCCH---HH
Q 004336 591 SVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--EYCDR---EL 663 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--~~~~~---~~ 663 (760)
.+....++++.+...+...-.. ......|.+|+++...|+.++|...|+++... .. .|-.++ ..|.. ..
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~---fYG~LAa~~Lg~~~~~~~ 395 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RG---FYPMVAAQRLGEEYPLKI 395 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CC---cHHHHHHHHcCCCCCCCC
Confidence 3445788888877777664221 22278899999999999999999999997542 22 222221 11211 00
Q ss_pred H-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 664 T-RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 664 A-~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~a 738 (760)
. ...-...+.. ......+..+...|+..+|...+..++.. .+.......+.+....|.++.|+....++
T Consensus 396 ~~~~~~~~~~~~-----~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 396 DKAPKPDSALTQ-----GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCCCchhhhhcc-----ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 0000001111 12355678889999999999999988875 44445555566677778888888766544
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.77 E-value=11 Score=39.17 Aligned_cols=61 Identities=11% Similarity=-0.067 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 494 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 494 Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
|+.+|.+|+.+.|++...+..||.++...|+.-+|+-+|-+++.....+ .+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777777777554333 556666555554
No 403
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.59 E-value=1e+02 Score=33.06 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+..+..++..-..++.+-.|.+....+..-.+.++...+..... -......+...|.++.+.|+.++|...|++++.+
T Consensus 315 I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 315 IDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 44455555555555556666677777776777777777665544 2334556677899999999999999999999999
Q ss_pred cCCh-HHHHHH
Q 004336 539 KRSF-EAFFLK 548 (760)
Q Consensus 539 ~p~~-~a~~~l 548 (760)
.++. +..+..
T Consensus 395 a~~~aer~~l~ 405 (415)
T COG4941 395 ARNAAERAFLR 405 (415)
T ss_pred cCChHHHHHHH
Confidence 8887 444443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=1.7e+02 Score=32.22 Aligned_cols=134 Identities=17% Similarity=0.057 Sum_probs=85.1
Q ss_pred hcCCHHHHHHHHHHHHhhC-CCCc---chhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 395 LRKEYDEAEHLFEAILTLS-PDYR---MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~-P~~~---~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
.+++|++|...-+..+..- -.+. +... ...|+.+...+...|+...-...+....+ ..-+..
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~-ak~~fy~~l~~E~~~~l~~~rs~l~~~lr-------------tAtLrh 203 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIA-AKLYFYLYLSYELEGRLADIRSFLHALLR-------------TATLRH 203 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHH-------------HhhhcC
Confidence 4678888888777665431 1111 1111 24566677777777775555444411111 222222
Q ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 471 DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 471 ~p-~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~----~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+. ..+.+...+-..|+..+.|++|-....+..-- +...+..++++|.+..-+++|..|.+++-+++...|..
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 22 23444555666888889999998877665411 11234567899999999999999999999999999976
No 405
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.82 E-value=18 Score=36.10 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
+...+++...+.-++.+|.+......+-.+|.-.|+|++|...++-+-.+.|+
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34445555555555555555544444445555555555555555554444444
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=70.42 E-value=1.1e+02 Score=29.87 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHhhcCChHHH
Q 004336 472 APKGVLYFRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVYEGWILY-----DTSHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 472 p~~~~~~~~la~~~~~-~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~-----~~g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
...++..+.||..+.. +.++++|.+.|+.--..+ ..+..-+.+|.-+. ..++...|+..|+.+-..+.. .+.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~-~aC 108 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP-QAC 108 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH-HHH
Confidence 3456677777765543 567777777776544332 23455555555443 356778888888877753211 455
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccHHHHHHHHHHHHH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYV 594 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~~~a~~~Lg~~y~ 594 (760)
..++.++.....+ ....-..++|.+++.++ +..+.+-+.|.-.|+
T Consensus 109 ~~~gLl~~~g~~~----r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 109 RYLGLLHWNGEKD----RKADPDSEKAERYMTRACDLEDGEACFLLSTMYM 155 (248)
T ss_pred hhhhhhhccCcCC----ccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHh
Confidence 5566555443111 11112356666666666 333555555555444
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.31 E-value=8.1 Score=41.23 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
.++..++....++++++..+....++++|++.++.+....|++......+
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 33445566666667777777777777777777776666666665554433
No 408
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=2.2e+02 Score=34.29 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++.+...|+-|+...+.- ..+++ -.+.+...|.-++..|++++|...|-+.+..
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 445566677776654432 12222 2456778899999999999999999999863
No 409
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.24 E-value=26 Score=36.67 Aligned_cols=81 Identities=16% Similarity=0.045 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+|.+-+...++.++.. . ..++..++..+...|+++.+...+ ++.+..+|.+-.+
T Consensus 136 ~f~~WV~~~R~~l~e~--~------~~~l~~lae~~~~~~~~~~~~~~l------------------~~Li~~dp~~E~~ 189 (280)
T COG3629 136 RFDEWVLEQRRALEEL--F------IKALTKLAEALIACGRADAVIEHL------------------ERLIELDPYDEPA 189 (280)
T ss_pred hHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHhcccHHHHHHHH------------------HHHHhcCccchHH
Confidence 3666666666655432 2 367778888888999999999999 9999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
|..+-..|...|+...|+..|++.-+.
T Consensus 190 ~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 190 YLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 999999999999999999999988664
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.98 E-value=19 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 513 VYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 513 ~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
+.|+.+|+..|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 411
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=15 Score=33.04 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=69.2
Q ss_pred eEEEE-ecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhcccc--CccC-----------
Q 004336 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT--GSLN----------- 248 (760)
Q Consensus 183 dv~~~-~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt--~~~~----------- 248 (760)
-|.+. ++|+.|... -.+|-.|--.+.|+. ++.++.-. |..+ .|+.++|..|++|.=. .++.
T Consensus 3 ~i~l~s~dge~F~vd-~~iAerSiLikN~l~-d~~~~n~p-~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVD-ENIAERSILIKNMLC-DSTACNYP-IPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEeh-HHHHHHHHHHHHHhc-cccccCCC-Cccc--chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 34454 466677764 456777777888876 46666554 3444 7999999999999743 2220
Q ss_pred -----------CCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 249 -----------GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 249 -----------~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
.++.+.+.++.-+||++.+..|.++||.-.+..+.
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 04667888999999999999999999998887663
No 412
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.73 E-value=2e+02 Score=31.71 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=85.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc---CChHHHHHHHH
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHA-AS--------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSFEAFFLKAY 550 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~-p~--------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~---p~~~a~~~la~ 550 (760)
..+..++++++|.+.-+..+... -. .+..|+++..+|...|+...-...+...+... .+.
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~-------- 205 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE-------- 205 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc--------
Confidence 34455788888888766654321 11 23456777777777777554444433333210 000
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----h--HHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----T--RAHQGLARV 624 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~--~a~~~La~~ 624 (760)
...+...+.+-..|...+.|+.|.....++.-+.. . +.++.+|++
T Consensus 206 -----------------------------e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 206 -----------------------------EGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred -----------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 01144556677778888889998888777654321 1 677888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhccCcHHHH
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARNNASAY 652 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~~~~~~ 652 (760)
..-+++|..|.+++-+++...|..+.++
T Consensus 257 kaiqldYssA~~~~~qa~rkapq~~alG 284 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQHAALG 284 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcchhhhh
Confidence 9999999999999999999999755443
No 413
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=67.45 E-value=9.8 Score=39.82 Aligned_cols=78 Identities=6% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~-Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.++....|+++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++.+.+...|.++++.+|+.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 44445568899999999988888999999999999999999999999987 5566778899999999999999999987
No 414
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=67.14 E-value=31 Score=37.73 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=61.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc---HH-------HHHHHHHHHHHCCCHHHHHHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASD---HE-------RLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~---~~-------a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
+.+.++..-.++...|..+..-...|++..|++...+...+. |.. .+ +--.|..+|..+++.+-|+...
T Consensus 172 iDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 172 IDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 344443333344444444444444455555555444433222 111 11 2345788899999999999999
Q ss_pred HHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhh
Q 004336 533 EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP 576 (760)
Q Consensus 533 ~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~ 576 (760)
.+.|.++|.+ ..+...|.+.... .++.+|.+.+
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~L-----------eRy~eAarSa 285 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRL-----------ERYSEAARSA 285 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 9999999988 7777777777766 6666665443
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.05 E-value=2.2e+02 Score=31.89 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=20.9
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCC
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDY 416 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~ 416 (760)
+|.+.+-.|||+-|...|+.+.+..-++
T Consensus 214 LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 214 LADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 4444555559999999999998766555
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.95 E-value=1.4e+02 Score=31.32 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=49.9
Q ss_pred hHHHHHHhhhHhh---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HH---HHHHHHHHHHcCCHHHHH
Q 004336 567 SLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RA---HQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 567 ~~leeAl~~~~~~---l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a---~~~La~~~~~~g~~~~A~ 635 (760)
..++++++-.+.. ....+++.++|..|.+.++.+.+.++..+.++..-. ++ ...+|.+|..+.=.++.+
T Consensus 96 ~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~l 175 (412)
T COG5187 96 EELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESL 175 (412)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 4444444444333 122788999999999999999999888887763211 33 344555555555555666
Q ss_pred HHHHHHHHhcc
Q 004336 636 EEMTKLIKKAR 646 (760)
Q Consensus 636 ~~l~~al~~~~ 646 (760)
+....+++...
T Consensus 176 E~~~~~iEkGg 186 (412)
T COG5187 176 EVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHhCC
Confidence 66666666655
No 417
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.86 E-value=2.7e+02 Score=32.96 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
..+....|.-....|++++|+..|.-|
T Consensus 414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 414 REIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445556677777888888888877655
No 418
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.62 E-value=24 Score=36.73 Aligned_cols=57 Identities=7% Similarity=-0.151 Sum_probs=48.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
.+|+...|.++..|..+|.++...|+.=.|+-+|-+++-.....+.+..+|..++..
T Consensus 6 ~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 6 RKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997665568888888888877
No 419
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.59 E-value=21 Score=37.16 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
.....+..|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.|++.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567789999999999999999999999999999999999999999888888887754
No 420
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.59 E-value=77 Score=33.70 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=54.4
Q ss_pred hhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch-H---HHHHHHHHHHHcCCHHH
Q 004336 565 VVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-R---AHQGLARVHFLKNNKTT 633 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-~---a~~~La~~~~~~g~~~~ 633 (760)
.+..++++++-.++.+.. .+++.+.|..|.+.|+-+.|.+.+.+..+. ++. + ....+|..|....=..+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 346666666666666333 789999999999999999999999887762 332 3 34455555555544455
Q ss_pred HHHHHHHHHHhcc
Q 004336 634 AYEEMTKLIKKAR 646 (760)
Q Consensus 634 A~~~l~~al~~~~ 646 (760)
.++..+.+++...
T Consensus 163 ~iekak~liE~Gg 175 (393)
T KOG0687|consen 163 SIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHhCC
Confidence 5555555555554
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.43 E-value=1.8e+02 Score=29.73 Aligned_cols=59 Identities=5% Similarity=-0.148 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHH-HCCCHHHHHHHHHHHH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILY-DTSHCEEGLRKAEESI 536 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-~a~~~Lg~i~~-~~g~~eeAl~~~~~al 536 (760)
+..+|.+..+.|+|++.+.++++++..+|.-. +-...++.+|- ..|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45678888999999999999999998877533 33344444442 2344444444444433
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.97 E-value=3.2e+02 Score=32.39 Aligned_cols=41 Identities=10% Similarity=-0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 673 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~ 673 (760)
.+....|.-....|++.+|+..|.-+ ++++.++..+.+.+.
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La-----------------~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLA-----------------EEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT-----------------T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-----------------hhHHHHHHHHHHHHH
Confidence 45566677788889998888888733 667777777766553
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.71 E-value=16 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 726 GDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 726 g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
|+.+.|...|++++...|.+++++..|.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456667777777777777777666655543
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.24 E-value=1.8e+02 Score=31.95 Aligned_cols=62 Identities=34% Similarity=0.499 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
..++..+|..|...|+++.|+++|-++-.. .+. ..+.++..+-...|+|..-..+-.++...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 568889999999999999999999996552 233 67788888888889887666655555443
No 425
>PF12854 PPR_1: PPR repeat
Probab=62.04 E-value=18 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 678 RVYPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 678 ~~~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
+...|..+...|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788888899999999999998875
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.43 E-value=36 Score=34.16 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
-+++.+...+|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45678899999999999999999999999999999999999999999999999999988
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.65 E-value=15 Score=40.52 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
-+..+|.+++...|||..|++.++.+ +... ..++ ...-+-....+++.|-+|+.+++|
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~--~~l~-------------------~~V~~~~is~~YyvGFaylMlrRY 180 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNK--KGLY-------------------TKVPACHISTYYYVGFAYLMLRRY 180 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-Cccc--chhh-------------------ccCcchheehHHHHHHHHHHHHHH
Confidence 35678889999999999998887742 1111 0011 112233445677788888888888
Q ss_pred HHHHHHHHHHH
Q 004336 696 NEAIAELSRAI 706 (760)
Q Consensus 696 ~eAi~~l~kal 706 (760)
.+|++.|...+
T Consensus 181 ~DAir~f~~iL 191 (404)
T PF10255_consen 181 ADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHH
Confidence 88888877766
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.89 E-value=1.6e+02 Score=32.49 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=33.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHH--HHHHHHHccCHHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL--HMLVREHIDNWTIADCWL 446 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~--lg~l~~~~g~~~~A~~~l 446 (760)
-.+.+++|..|...|+.+...-|.... ...+.. .|..++..-++++|...+
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~----~~~~~~l~~~y~~WD~fd~~~A~~~l 192 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREE----YQRYKDLCEGYDAWDRFDHKEALEYL 192 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhh----HHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 334445999999999999886444431 123333 344556777888888888
No 429
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.71 E-value=17 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
+.||.+|...|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57889999999999999999988853
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.54 E-value=2.6e+02 Score=30.81 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHH--HHHHHHCCCHHHHHHHHHHHHhh
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE--RLVYE--GWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~--a~~~L--g~i~~~~g~~eeAl~~~~~al~l 538 (760)
.....+.-++..++|..|.+.++.....-|.... .+..+ |.-+.+.-++++|...+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456777888999999999999999886344333 34444 44556788999999999998764
No 431
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.74 E-value=2.1e+02 Score=28.42 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHH-HHHHHHHH
Q 004336 651 AYEKRSEYCDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL----HLLH-LRAAFHEH 724 (760)
Q Consensus 651 ~~~~~~~~~~~~~A~~~l~kal~l-~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~----~~~~-l~a~~~~~ 724 (760)
+|...+..|+ ++|...|-++-.. .-+.+...+.+|..|. ..+.++|+..+-+++++.+.+ +.+. -.+.++.+
T Consensus 113 lYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3443433343 3444444433222 1245566667775554 567788888888888765443 2333 33777777
Q ss_pred cCCHHHHH
Q 004336 725 TGDVLGAL 732 (760)
Q Consensus 725 ~g~~~~A~ 732 (760)
.|+++.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 78887764
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.41 E-value=81 Score=32.45 Aligned_cols=65 Identities=6% Similarity=-0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
.....+|.-|+..|++++|.+.|+.+.......+|....- .....+..++...|+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~------------------------~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLT------------------------EVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHH------------------------HHHHHHHHHHHHhCCH
Confidence 5667899999999999999999998866655444332211 2344556677777777
Q ss_pred HHHHHHHHH
Q 004336 696 NEAIAELSR 704 (760)
Q Consensus 696 ~eAi~~l~k 704 (760)
+..+...-+
T Consensus 235 ~~~l~~~le 243 (247)
T PF11817_consen 235 EDYLTTSLE 243 (247)
T ss_pred HHHHHHHHH
Confidence 776655433
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.07 E-value=30 Score=22.19 Aligned_cols=29 Identities=14% Similarity=-0.092 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
|+++.|...|++++...|.....|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777777777777777777766544
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.06 E-value=4.7e+02 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 679 VYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 679 ~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
...|...+.++.++|+.++|+..|-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45677889999999999999998877664
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.77 E-value=2.6e+02 Score=29.06 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=18.0
Q ss_pred hCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 004336 674 LDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 674 l~p~~~~~~~~La~-~~~~~g~~~eAi~~l~kal~ 707 (760)
-.|.....+..+|. -|.-.++...|...+..-.+
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555554 35566777777765554443
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.17 E-value=3.8e+02 Score=33.62 Aligned_cols=202 Identities=14% Similarity=0.042 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH------HCCC----HHHHHHHHHHHHhhcCChH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY------DTSH----CEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~------~~g~----~eeAl~~~~~al~l~p~~~ 543 (760)
++...+.+|.+|...|+..+|+.+|.+|..--.+. +++..+..-.. ..|+ -..|+.+|.+++++-..+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h- 996 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH- 996 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh-
Confidence 35567888999999999999999999987643322 23332221110 2232 123556666666543222
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-hHHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR-KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-TRAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~-~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-~~a~~~L 621 (760)
+..+.++..-..|++....... .+..+..+=.-..+.|.+-+|....-+--.... ...+..+
T Consensus 997 ----------------n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRql 1060 (1480)
T KOG4521|consen 997 ----------------NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQL 1060 (1480)
T ss_pred ----------------ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0111111112222222222211 144455555566677777777554432111111 1566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCChHHHHHH-HHHHHHcCCHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRA-DLEMVTQLDPLRVYPYRYR-AAVLMDSHKENEAI 699 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~-~l~kal~l~p~~~~~~~~L-a~~~~~~g~~~eAi 699 (760)
..+++..|+++. +...| --|-.++-.. .++++-+..|....-++.+ =.-+...+++.+|-
T Consensus 1061 vivLfecg~l~~--------L~~fp----------figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaa 1122 (1480)
T KOG4521|consen 1061 VIVLFECGELEA--------LATFP----------FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAA 1122 (1480)
T ss_pred HHHHHhccchHH--------HhhCC----------ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHH
Confidence 778888887732 11122 0122233333 4555666666554444443 33456677777655
Q ss_pred -HHHHHHHHcCCC
Q 004336 700 -AELSRAIAFKAD 711 (760)
Q Consensus 700 -~~l~kal~~~p~ 711 (760)
.+|+.+..+..+
T Consensus 1123 tvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1123 TVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHHhccc
Confidence 467777766544
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=12 Score=40.02 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc-HHHHHH----HHhc
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-ASAYEK----RSEY 658 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~-~~~~~~----~~~~ 658 (760)
...-+.|.-.++.++|+.|..-|.++++.-.. ....+..+... + +...+.. -.++.. ....
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~----------~s~~~~~e~~~---~-~~~~~~~r~~~~~n~~~~~lk~ 288 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSE----------QSRDREKEQEN---R-IPPLRELRFSIRRNLAAVGLKV 288 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcc----------ccccccccccc---c-cccccccccccccchHHhcccc
Confidence 33444677788899999999888887653211 11111111111 0 0000000 000000 0112
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
+.+..|+..-..+++.++....+++.++..+....++++|++.+..+....|++..+.
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 2333444444444445556666666666666666666666666666666666655443
No 438
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.25 E-value=3.2e+02 Score=29.42 Aligned_cols=89 Identities=24% Similarity=0.187 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH---LLH-LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 666 ~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~---~~~-l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..|+-.....|. +..-.|.+.+.....-...++...+..... |... .++ .++.++.++|+.++|...|++++.+
T Consensus 317 aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 317 ALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 334433444443 333445555555555566677666655443 2222 333 5688888889999999999999999
Q ss_pred CCCcHHHHHHHHHhh
Q 004336 742 DPNDQEMLELHSRVY 756 (760)
Q Consensus 742 ~P~~~~~l~~~~r~~ 756 (760)
.++..+..-+..|+.
T Consensus 395 a~~~aer~~l~~r~~ 409 (415)
T COG4941 395 ARNAAERAFLRQRLD 409 (415)
T ss_pred cCChHHHHHHHHHHH
Confidence 888888766665554
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=1.3e+02 Score=32.03 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC----h---HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh-
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS----F---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR- 579 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~----~---~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~- 579 (760)
-.+++.+.|.-|.+.|+-+.|.+++.+..+..-. - -....+|..+.+. ..+...+++|...+++.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~-------~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH-------DLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhCC
Confidence 3578888999999999999999888877654321 1 2333556666654 33445677777777777
Q ss_pred -ccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 580 -LRK-GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 580 -l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
|++ ...-...|...+...++.+|...|-.++.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 443 33444457777788899999999988876
No 440
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.05 E-value=5.7e+02 Score=32.26 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=22.7
Q ss_pred eEeehhHHHHhcCCHHH-HhhccCCCCCCccceeEe
Q 004336 191 EKIECDRQKFAALSAPF-SAMLNGSFMESLCEDIDL 225 (760)
Q Consensus 191 ~~~~~hr~~la~~s~yf-~amf~~~~~e~~~~~v~~ 225 (760)
+.|.=|+.|||..=++- +.+|..-|...++.+|+|
T Consensus 672 EtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidl 707 (1265)
T KOG1920|consen 672 ETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDL 707 (1265)
T ss_pred eeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 45666778888777765 344555566666666665
No 441
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=3.5e+02 Score=29.89 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=96.2
Q ss_pred CH-HHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-----HHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 398 EY-DEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-----WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 398 ~~-~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-----~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
.| .+++..=.+++..+|+.. .++...-.++..... ..+-...+ .+.+.....++..+
T Consensus 43 ~yd~e~l~lt~~ll~~npe~~------t~wN~Rr~~~~~r~~~~~~~~~ek~~~l-----------d~eL~~~~~~L~~n 105 (421)
T KOG0529|consen 43 EYDEEHLELTSELLEKNPEFY------TVWNYRRLIIEERLTRAQLEPLEKQALL-----------DEELKYVESALKVN 105 (421)
T ss_pred ccchHHHHHHHHHHhhCchhh------hhhhhHHHHHHHhhhhhcCCHHHHHHhh-----------HHHHHHHHHHHHhC
Confidence 44 567777788889999885 333332222211111 11111111 12345568999999
Q ss_pred CCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhhcCCh-HH
Q 004336 472 APKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILY----DTSHCEEGLRKAEESIQMKRSF-EA 544 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~--~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~----~~g~~eeAl~~~~~al~l~p~~-~a 544 (760)
|+.-.+|+.+.-++.+.+. +..=++..+++++.+|.+-.+|.+.=.+.. ......+=+++..++|.-++++ .+
T Consensus 106 pksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa 185 (421)
T KOG0529|consen 106 PKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA 185 (421)
T ss_pred chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH
Confidence 9999999999999987764 578889999999999999887766544433 3334677788899999989888 88
Q ss_pred HHHHHHHHHcc
Q 004336 545 FFLKAYALADS 555 (760)
Q Consensus 545 ~~~la~~l~~~ 555 (760)
|.....++...
T Consensus 186 WhyRs~lL~~l 196 (421)
T KOG0529|consen 186 WHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHHHh
Confidence 88777776643
No 442
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.32 E-value=1.6e+02 Score=34.03 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
..++++.|...+. .-| .+.+...+..+..+|-.++|+ .+.++.+-.|.++.-+
T Consensus 598 mrrd~~~a~~vLp----~I~--k~~rt~va~Fle~~g~~e~AL-------~~s~D~d~rFelal~l-------------- 650 (794)
T KOG0276|consen 598 LRRDLEVADGVLP----TIP--KEIRTKVAHFLESQGMKEQAL-------ELSTDPDQRFELALKL-------------- 650 (794)
T ss_pred hhccccccccccc----cCc--hhhhhhHHhHhhhccchHhhh-------hcCCChhhhhhhhhhc--------------
Confidence 3456666554322 223 244556677777777777764 4444432233332211
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++++.|.+...+.-. ..-|..||.+....+++..|.++|.++..
T Consensus 651 grl~iA~~la~e~~s-~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 651 GRLDIAFDLAVEANS-EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred CcHHHHHHHHHhhcc-hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 555666555544422 45677889999999999999999988854
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.29 E-value=1.5e+02 Score=32.59 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.++..+|.-|..-|+++.|++.|-++-..-.... ..+..+.++-.+....|+|..-..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhHH
Confidence 5677889999999999999999999654433221 12456666777778888888777776
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.24 E-value=2.1e+02 Score=30.02 Aligned_cols=96 Identities=14% Similarity=-0.029 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----H---HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----E---AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-- 579 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~---a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~-- 579 (760)
.+++.++|..|.+.++.+.+.++..+.++..-.. + .-..+|.++.++ ..+.+.++.+-.++++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~-------~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR-------KVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhCCC
Confidence 5788899999999999999998888877643221 2 233556666665 23334455555566555
Q ss_pred ccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 580 LRK-GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 580 l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
|.+ ...-...|...+...++.+|...+-..+.
T Consensus 188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 333 33333456777777888888888877765
No 445
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.94 E-value=66 Score=37.82 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 488 LNCPEAAMRSLQLARQHA-ASDHERLVYEGWILY---------DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~---------~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
-|+-++|+...-.+++.. |-.++.+-.-|.+|. +.+..+.|+.+|+++.+..|...+-.+++..+..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRA 332 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHH
Confidence 467788888777777654 344455555566654 4577899999999999999987333444444433
No 446
>PF13041 PPR_2: PPR repeat family
Probab=51.50 E-value=42 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..|+.+-..|.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567777778888888888888888776
No 447
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.43 E-value=2e+02 Score=34.68 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh-CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL-SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l-~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
...+..+...|.-++.+|++++|..+|-+.+.. +|... . .-+.......+-..++
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-------i-----~kfLdaq~IknLt~YL------------ 420 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-------I-----KKFLDAQRIKNLTSYL------------ 420 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-------H-----HHhcCHHHHHHHHHHH------------
Confidence 445677888899999999999999999888754 33331 0 0011111222222333
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHCCCHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL---VYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~---~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+...+..-.+.+-...|-.+|.++++.++=.+..+ ..+ ..... -..-.++++.+-+++|.-...+.
T Consensus 421 ------e~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 421 ------EALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred ------HHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh----cCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 44444444455555566778888888776554433 333 11111 01113344444555554443332
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc-cH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RK-GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l-~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
-. ++.. +-..+... +++++|+++.+... .. .......|.+++.. .+++-...+-+...
T Consensus 490 ~~-he~v-----l~ille~~-----------~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 490 KK-HEWV-----LDILLEDL-----------HNYEEALRYISSLPISELLRTLNKYGKILLEH-DPEETMKILIELIT 549 (933)
T ss_pred cc-CHHH-----HHHHHHHh-----------cCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHh
Confidence 21 1111 11122222 66777777766662 21 44555566665543 44444444444444
No 448
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=49.46 E-value=7.7 Score=41.41 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=61.7
Q ss_pred ceeEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHH
Q 004336 181 LRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (760)
Q Consensus 181 ~~dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll 259 (760)
-.|++|.+ .|.-|.||+..|++.|.||..-|..-+ -+ ..+|+=+ .+-++++..++.|.|-..=. +-++--.+||
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~-~~-~heI~~~--~v~~~~f~~flk~lyl~~na-~~~~qynall 223 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY-VQ-GHEIEAH--RVILSAFSPFLKQLYLNTNA-EWKDQYNALL 223 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc-cc-cCchhhh--hhhHhhhhHHHHHHHHhhhh-hhhhHHHHHH
Confidence 36888876 577899999999999998765333211 12 2244333 47889999999999976332 4455558899
Q ss_pred HHHhhhChHhHHH
Q 004336 260 IFANKFCCERLKD 272 (760)
Q Consensus 260 ~~a~~~~~~~~~~ 272 (760)
+...+|+.+.+..
T Consensus 224 si~~kF~~e~l~~ 236 (516)
T KOG0511|consen 224 SIEVKFSKEKLSL 236 (516)
T ss_pred hhhhhccHHHhHH
Confidence 9999999887654
No 449
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.70 E-value=2.1e+02 Score=26.03 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=35.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
+...+.+...+.+++..+..++.++..+..+..+|... +..+.+..++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34567889999999999988887788888888888754 3455555555
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.63 E-value=3.1e+02 Score=27.97 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHc
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALAD 554 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~ 554 (760)
-+..++.+..+.|+|++.+..+++++..+++. +-...+..++..
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn 48 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKN 48 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999998876 555566655544
No 451
>PF13041 PPR_2: PPR repeat family
Probab=48.19 E-value=84 Score=22.98 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555556666666666655554
No 452
>PF12854 PPR_1: PPR repeat
Probab=47.41 E-value=45 Score=22.54 Aligned_cols=26 Identities=8% Similarity=-0.157 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
...|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44556666666666666666666654
No 453
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.44 E-value=1.5e+02 Score=38.11 Aligned_cols=30 Identities=20% Similarity=-0.017 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
+.....+|..++..|++.+|++.|..|+..
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~ 271 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEI 271 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHH
Confidence 344556777777777777777777776654
No 454
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=46.26 E-value=8.4 Score=26.33 Aligned_cols=15 Identities=47% Similarity=1.010 Sum_probs=11.8
Q ss_pred hhhhhhhhhhhhhhhh
Q 004336 121 LVFGAWLKYEKQGEEL 136 (760)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (760)
+..+||+.| ||++.+
T Consensus 21 lfvaAylQY-rRg~~l 35 (37)
T PRK00665 21 LFVAAWNQY-KRGNQL 35 (37)
T ss_pred HHHHHHHHH-hccccc
Confidence 567899999 667766
No 455
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=46.09 E-value=17 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhCCccc
Q 004336 288 AVELMGYAIEENSPVLAVSCLQVFLRELPDCL 319 (760)
Q Consensus 288 al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l 319 (760)
|++++.+|..++...|...|.+++..+|+...
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~ 32 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVS 32 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444444444433
No 456
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.99 E-value=4.4e+02 Score=29.34 Aligned_cols=108 Identities=16% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+.....++.+.++...+++..|.....+++-.....-.-.-....+..++.++...+..-.+..+.
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lpla-------------- 336 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLA-------------- 336 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHH--------------
Confidence 344556666777777778999988888876554322111222233444555554445444444433
Q ss_pred HHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 461 LSVIY--QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 461 l~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
+.... +-...+-..+..-..++..+...|.+++|...+..++
T Consensus 337 L~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~ 380 (482)
T KOG4322|consen 337 LMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAV 380 (482)
T ss_pred HHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhh
Confidence 11111 1111222223334455555566666666666665554
No 457
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=45.43 E-value=4.9e+02 Score=29.29 Aligned_cols=131 Identities=9% Similarity=-0.058 Sum_probs=81.8
Q ss_pred HHhhhHHHhcCC-HHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 387 HQLGCVRLLRKE-YDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 387 ~~lG~~~l~~g~-~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
..-+.-+.+.|. -++|+..++.+++..|.+. ......- ..-...|.+|+..- .+..+-.+.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~------ec~n~v~--~fvKq~Y~qaLs~~----------~~~rLlkLe 444 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDI------ECENIVF--LFVKQAYKQALSMH----------AIPRLLKLE 444 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccH------HHHHHHH--HHHHHHHHHHHhhh----------hHHHHHHHH
Confidence 344445555556 8899999999999998874 2222111 11122233443211 000001112
Q ss_pred HHHH---hCC---CcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 466 QMLE---SDA---PKGVLYFRQ--SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 466 ~al~---~~p---~~~~~~~~l--a~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
..+. +.| .+.+.-.-+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.+++...+|++|..++.+.-
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 2222 112 223333333 4467889999999998888888999 89999999999999999999999987653
No 458
>PRK12798 chemotaxis protein; Reviewed
Probab=44.91 E-value=4.8e+02 Score=29.02 Aligned_cols=208 Identities=14% Similarity=0.007 Sum_probs=122.8
Q ss_pred HHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHH-
Q 004336 405 LFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL- 483 (760)
Q Consensus 405 ~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~- 483 (760)
..+.++..++... .+....-|.+.+-.|+..++...+.--+. ...|.....+..|..
T Consensus 99 vlr~L~~~d~~~~-----~d~~L~~g~laY~~Gr~~~a~~~La~i~~-----------------~~l~~~lg~~laLv~a 156 (421)
T PRK12798 99 TLRKLLARDKLGN-----FDQRLADGALAYLSGRGREARKLLAGVAP-----------------EYLPAELGAYLALVQG 156 (421)
T ss_pred HHHHHHHcCCCCh-----hhHHHHHHHHHHHcCCHHHHHHHhhcCCh-----------------hhcCchhhhHHHHHHH
Confidence 3455666665432 46677788888899999999888711111 001333333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHccc
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSS 556 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~a~~~la~~l~~~~ 556 (760)
......+..+|+..|+.+.=..|... -++..--.+..+.|+.+++..+..+-+...... ..+-..+..+....
T Consensus 157 ~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 157 NLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred HHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 44567789999999999998888753 345555566678999999988887777665443 12222222222221
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCC
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNN 630 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~ 630 (760)
.+.....+.+.+..+....+ ...|..++..-.-.|+.+-|.-.-++++.+... .+...-+....-..+
T Consensus 237 -----d~~~~~~l~~~ls~~d~~~q-~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 237 -----DEIRDARLVEILSFMDPERQ-RELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD 310 (421)
T ss_pred -----ccccHHHHHHHHHhcCchhH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc
Confidence 11111233333333322222 567888888888888888888888888875322 333333444444556
Q ss_pred HHHHHHHHHH
Q 004336 631 KTTAYEEMTK 640 (760)
Q Consensus 631 ~~~A~~~l~~ 640 (760)
+++|.+.+.+
T Consensus 311 ~~~al~~L~~ 320 (421)
T PRK12798 311 AESALEELSQ 320 (421)
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 459
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.61 E-value=1.1e+02 Score=35.40 Aligned_cols=33 Identities=18% Similarity=-0.011 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.++..-|-.||.+....|++..|.++|.++...
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 456778899999999999999999999988654
No 460
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=44.44 E-value=9.4 Score=26.10 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhhhhhh
Q 004336 121 LVFGAWLKYEKQGEEL 136 (760)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (760)
+..+|||.| ||++.+
T Consensus 21 lfvaAylQY-rRg~~l 35 (37)
T CHL00008 21 LFVTAYLQY-RRGDQL 35 (37)
T ss_pred HHHHHHHHH-hhcccc
Confidence 567899999 777765
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.36 E-value=1.5e+02 Score=27.44 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 478 YFRQSL-LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 478 ~~~la~-~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
|+.+|. .+..+|+-++--+.+....+.+..+++.+..+|.+|...|+..+|-..+++|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444 455677777777777777665666788999999999999999999988888865
No 462
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.98 E-value=3.8e+02 Score=28.65 Aligned_cols=119 Identities=19% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA- 501 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka- 501 (760)
......|+.+|...++|..|...+ .+++..+ -.--.........+.++|.+|++.++..+|..+..++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L------~~I~~~t-----g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL------VGIPLDT-----GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH------hccCccc-----chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q ss_pred -HHhCCCcHHHHHHH----HHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHH
Q 004336 502 -RQHAASDHERLVYE----GWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYAL 552 (760)
Q Consensus 502 -l~~~p~~~~a~~~L----g~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l 552 (760)
+..+..+......+ |.++-..+++-||.+.|.+.....--+ +-.-.++.+.
T Consensus 172 il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~ 229 (399)
T KOG1497|consen 172 ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKAL 229 (399)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
No 463
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.62 E-value=49 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=14.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004336 685 RAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 685 La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.|.-+-+.|++.+|+.+|+++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445566777777766666553
No 464
>PHA03098 kelch-like protein; Provisional
Probab=41.44 E-value=16 Score=42.23 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCH
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASR 285 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~ 285 (760)
++.+|+.+++.+|..+.+..|++.|..|+..++..+
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v 140 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELI 140 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998765433
No 465
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.89 E-value=83 Score=30.86 Aligned_cols=50 Identities=12% Similarity=-0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 492 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 492 ~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+..++..++.+...| ++..+..++.++...|+.++|....+++..+.|..
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 344555666676667 57788888999999999999999999999888844
No 466
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=39.87 E-value=19 Score=38.49 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=85.6
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHH--HH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI--LI 260 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~l--l~ 260 (760)
|++.......+++|..+|...|+-|.-+....-.-+...-+.+. |++...+..++.|.|.+ ++ --+.+..++ +.
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~ 103 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLA 103 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hh-hhHHHHHHHHHHh
Confidence 34445566789999999999999888776544333344455565 78999999999999998 65 555554443 33
Q ss_pred HHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHH
Q 004336 261 FANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQV 310 (760)
Q Consensus 261 ~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~ 310 (760)
....+-+...+..|+..+...+-+-.++...+..+.......|+.+....
T Consensus 104 ~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss 153 (319)
T KOG1778|consen 104 LSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSS 153 (319)
T ss_pred hhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHH
Confidence 33467777888889888877554566677777777666666665444433
No 467
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=39.85 E-value=4.9e+02 Score=27.70 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC-
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD- 471 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~- 471 (760)
.+..+++.+.++..++.+..+|-.- +..++.+.+..+.| ++.+...+ ...+...
T Consensus 109 ~~~~~~~~~Ll~~~E~sl~~~pfWL------Dgq~~~~qal~~lG-~~~~a~aI------------------~~el~~fL 163 (301)
T TIGR03362 109 LLAQADWAALLQRVEQSLSLAPFWL------DGQRLSAQALERLG-YAAVAQAI------------------RDELAAFL 163 (301)
T ss_pred HHhCCCHHHHHHHHHHHHHhCchhh------HHHHHHHHHHHHCC-CHHHHHHH------------------HHHHHHHH
Q ss_pred ------------------CCcHHHHHHH----------------------------HHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 472 ------------------APKGVLYFRQ----------------------------SLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 472 ------------------p~~~~~~~~l----------------------------a~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
.+....|+.- +......+..++|+..++..+...
T Consensus 164 ~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~ 243 (301)
T TIGR03362 164 ERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA 243 (301)
T ss_pred HhCcChhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Q ss_pred CCcHHHHHH---HHHHHHHCCCHHHHHHHHHHHHh
Q 004336 506 ASDHERLVY---EGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 506 p~~~~a~~~---Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
++.-+.++. ++.++...|+++-|...|++..+
T Consensus 244 ~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 244 REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 468
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.32 E-value=44 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
|+.+-..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455556666666666666666543
No 469
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.00 E-value=1.2e+02 Score=36.10 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhCC----CChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHH
Q 004336 662 ELTRADLEMVTQLDP----LRVYPYRYRAAVLMD--SHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRD 734 (760)
Q Consensus 662 ~~A~~~l~kal~l~p----~~~~~~~~La~~~~~--~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~ 734 (760)
..+...|..++.+-| .......+.+.+++. .|++.+++..-.-++...|....+.+. +..|...+.++-|.+.
T Consensus 70 ~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 70 EGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred hccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 334444444444444 223344455655554 467888888888888888887766654 7778777888888888
Q ss_pred HHHHHhcCCCcHHHHHHHHHhh
Q 004336 735 CRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 735 ~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
..-....+|.+.++...+.+++
T Consensus 150 l~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 150 LRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HHHHhcCCCCcchHHHHHHHHH
Confidence 7777888888877766555543
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.59 E-value=4.7e+02 Score=27.11 Aligned_cols=62 Identities=13% Similarity=-0.055 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hcch--HHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK----------------IRHT--RAHQGLA-RVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~----------------~~~~--~a~~~La-~~~~~~g~~~~A~~~l~~al~ 643 (760)
+..+..+|..|.+.|++.+|..+|-..-. -.+. +.+...| .-|...|+...|...+....+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67777788888888888877777632211 0111 2222222 345567888888887776665
Q ss_pred h
Q 004336 644 K 644 (760)
Q Consensus 644 ~ 644 (760)
.
T Consensus 170 ~ 170 (260)
T PF04190_consen 170 K 170 (260)
T ss_dssp H
T ss_pred H
Confidence 5
No 471
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=37.81 E-value=78 Score=24.69 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=38.3
Q ss_pred CCC-CchhHHHHHHHHHHHHhhCCcccchhhHHHHHHH--hhccchhHHHHHHHHHhhc
Q 004336 57 PNY-KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQV--FKGLGEAKLMRRSLRKAWQ 112 (760)
Q Consensus 57 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 112 (760)
|.| .|=|+-|.|-..|+.|.. ++|...--+.-+ --=+||...+|.+++.|++
T Consensus 5 pnl~~pD~fY~~Li~aH~gLs~----e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 5 PNLADPDDFYEALIEAHRGLSD----EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred CCCCChhHHHHHHHHHHhCCCH----HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 444 488999999999999864 445444333332 2458999999999999985
No 472
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.22 E-value=58 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+.++|+..+.+|+..| ..|++++|+..|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.83 E-value=67 Score=35.60 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
...|..++.-.|+|..|+..+.-- +++. ...... .+-....+|..|.+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-------dl~~----~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-------DLNK----KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-------Cccc----chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677889999999988111 1111 111222 244667888899999999999999999987763
No 474
>PHA02790 Kelch-like protein; Provisional
Probab=36.78 E-value=29 Score=39.70 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHH
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASRE 286 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~ 286 (760)
|+++|..+++.+|+.|+|..|.+.+..|+..++..+.
T Consensus 120 l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~ 156 (480)
T PHA02790 120 FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELE 156 (480)
T ss_pred CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHh
Confidence 8999999999999999999999999999998764443
No 475
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=8.4e+02 Score=29.25 Aligned_cols=153 Identities=16% Similarity=0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-CCh--HHHHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSF--EAFFLKAYALA 553 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-p~~--~a~~~la~~l~ 553 (760)
+-+.+|.+....+..+.-.+.+.-+-+-.-+....-...|..+...|+-++|-.+.++++.-. |-- ...+.++.+|.
T Consensus 469 Agi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~ 548 (929)
T KOG2062|consen 469 AGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYV 548 (929)
T ss_pred HHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHh
Confidence 445566666666554433334444433333333334556778888899999999998887543 322 34555566665
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhcc----H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLR----K--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLAR 623 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~----~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~ 623 (760)
.+ ++..--.+.+.-+.. . ..+-..+|.++ ..+++.-....+-.-+..++ .+-..||.
T Consensus 549 GT-----------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl--~~dp~~~~s~V~lLses~N~HVRyGaA~ALGI 615 (929)
T KOG2062|consen 549 GT-----------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL--FRDPEQLPSTVSLLSESYNPHVRYGAAMALGI 615 (929)
T ss_pred cc-----------CchhhHHHhhcccccccchHHHHHHHHHheeeE--ecChhhchHHHHHHhhhcChhhhhhHHHHHhh
Confidence 55 222211111111100 0 22333444433 34555444444333332222 34445666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~ 643 (760)
++.-.|. .+|+..++.+..
T Consensus 616 aCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 616 ACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhcCCCc-HHHHHHHhhhhc
Confidence 6666664 366666665554
No 476
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.43 E-value=80 Score=31.81 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=57.8
Q ss_pred cceeEE-EEecCeEeehhHHHHhcCC-HHHHhhccCCCC--CCccceeEecCCCCCHHHHHHHHhccccCccCCCCh--h
Q 004336 180 VLRNVV-FRIHEEKIECDRQKFAALS-APFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP--N 253 (760)
Q Consensus 180 ~~~dv~-~~~~~~~~~~hr~~la~~s-~yf~amf~~~~~--e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~--~ 253 (760)
.+.||+ +-|||..+..-+.-|...= .-...||+|.+. -+......| +=+-..|+-|++|..|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 345654 4577776553222232221 234567765221 112234445 34667899999999997774 777 7
Q ss_pred hHHHHHHHHhhhChHhHHHHHH
Q 004336 254 LLLEILIFANKFCCERLKDACD 275 (760)
Q Consensus 254 ~v~~ll~~a~~~~~~~~~~~c~ 275 (760)
++..|..-|+.|++......+.
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~ 103 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLL 103 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHh
Confidence 8999999999999996665433
No 477
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.79 E-value=68 Score=26.49 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 492 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 492 ~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
..|+.+.++|++.+ ..|++++|+.+|.++++.
T Consensus 4 ~~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHH
No 478
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.26 E-value=1.1e+02 Score=28.48 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
..+.....+...+..|++.-|......++..+|++.++....+.++..+|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888888888888888888887777665433
No 479
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.81 E-value=79 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 682 YRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 682 ~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
|..+-..|.+.|++++|.+.|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566677888888888888877654
No 480
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.56 E-value=2.5e+02 Score=32.72 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=52.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+.-+......+...+..+..+...|..++|-.+|++.+..+|+ +.++..+.-++..|-...|...+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 32 DSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3333333445566677788888899999999999999998888 6777888888888888888877773
No 481
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.49 E-value=81 Score=32.07 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
..+..|+++.|++..+.+++.+-..+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~P 117 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMP 117 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCC
Confidence 45678888888888888888764333
No 482
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.40 E-value=77 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
|+.+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666665543
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.03 E-value=2e+02 Score=25.25 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID 437 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g 437 (760)
..+++......|.+.+..||+..|++...++-+.. +++ .-.+..-+.....+|
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~-~~~-----~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS-DNP-----LLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCH-----HHHHHHHHHHHHHcC
Confidence 34567777788999999999999999999996654 343 233433444444444
No 484
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=32.86 E-value=4.3e+02 Score=25.02 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------hcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK----------IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~----------~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~ 643 (760)
.......+.-.++.|+...|.+.++.+-. +.........+..+...|++.+|...+..+..
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45566678888999999999999887654 12225666778888999999999998887764
No 485
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.73 E-value=7.2e+02 Score=27.56 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHc----CCHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK--ENEAIAELSRAIAFKADLHLLH-LRAAFHEHT----GDVLGALRD 734 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~--~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~----g~~~~A~~~ 734 (760)
++-+.....+++.+|+...+|+.+.+++.+.+. +..=+...+++++.+|.+...| ++-.+.... ....+=+++
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 455666777788888888888888888877663 5666777788888887765333 553333221 124455666
Q ss_pred HHHHHhcCCCcHHHHH
Q 004336 735 CRAALSVDPNDQEMLE 750 (760)
Q Consensus 735 ~~~aL~l~P~~~~~l~ 750 (760)
..+++.-++.|--++.
T Consensus 172 tt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWH 187 (421)
T ss_pred HHHHHhccchhhhHHH
Confidence 6777776776665543
No 486
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=32.50 E-value=5.7e+02 Score=26.30 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh-cC-Ch--HHHHHHHHHHHc
Q 004336 512 LVYEGWILYDTSHCEEGLRKAEESIQM-KR-SF--EAFFLKAYALAD 554 (760)
Q Consensus 512 ~~~Lg~i~~~~g~~eeAl~~~~~al~l-~p-~~--~a~~~la~~l~~ 554 (760)
+..++.+..+.|+|++.+...++++.. +| .. +-...+..+|..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn 50 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKN 50 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhh
Confidence 345667777778888888888777765 43 22 555555555544
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=32.39 E-value=3.1e+02 Score=31.64 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=27.9
Q ss_pred hHHHHHHhhhHhhccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 567 SLLEDALKCPSDRLRK--GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+.+|+...+..... ..-|..+|..|++.++|.+|+..+-.|-.
T Consensus 300 ~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 300 ELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333222 45667788888888999999888877644
No 488
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.43 E-value=1.8e+02 Score=34.67 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH--HccCHHHHHHHHhhhccccccCC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE--HIDNWTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~--~~g~~~~A~~~l~l~~~~~~~~d 457 (760)
..++.....-|+..+..++|.+|.--|..++.+-|....... ......+.++. ..++|..++.--
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a--~~~~~~~s~~m~~~l~~~~~~~~E~----------- 116 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVA--TLRSNQASCYMQLGLGEYPKAIPEC----------- 116 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhh--hHHHHHHHHHhhcCccchhhhcCch-----------
Confidence 345555566678888888999998889999998885431111 22223333443 445666665444
Q ss_pred cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 004336 458 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 511 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a 511 (760)
.-++...|....+++..+..|...+.++-|++.+.-.....|.+..+
T Consensus 117 -------~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 117 -------ELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred -------hhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 67778889888999999999999999999999877777778877443
No 489
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=31.09 E-value=3.2e+02 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
+....++|.++|..+++.+++.+|+..+..|-.
T Consensus 314 ~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 314 NNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp TT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999987754
No 490
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=30.96 E-value=1.1e+02 Score=29.15 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=74.8
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCcc-----ceeEecCCCCCHHHHHHHHhccccCccCCC
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC-----EDIDLSENNISPSGLRIISDFSVTGSLNGV 250 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~-----~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~ 250 (760)
+.++...=|.|-|||.-|---|..|.--+.-|..-|..+-.+... .-.-| +=+|.-+.-|++|...|++- +
T Consensus 15 ~~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI---DRDP~~FgpvLNylRhgklv-l 90 (210)
T KOG2715|consen 15 NGNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI---DRDPFYFGPVLNYLRHGKLV-L 90 (210)
T ss_pred cCCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe---ccCcchHHHHHHHHhcchhh-h
Confidence 445554557888999999999999988887787777654333221 12333 45899999999999999996 8
Q ss_pred ChhhHHHHHHHHhhhChHhHHHHHHHHHHh
Q 004336 251 TPNLLLEILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
+.-.=..+|+-|..+.++.|++..-+.+..
T Consensus 91 ~~l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 91 NKLSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhhhhccchhhhccCChHHHHHHHHHHHH
Confidence 876666788999999998887765555543
No 491
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.90 E-value=1.4e+02 Score=27.95 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
-.+..|+|.-|..+.+.++..+|++. .+....+.++.+.|.-.
T Consensus 79 ~~~~~gd~~wA~~L~d~l~~adp~n~------~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 79 AALAAGDYQWAAELLDHLVFADPDNE------EARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHhc
Confidence 34445599999999999999999996 77777877776655433
No 492
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.90 E-value=1.9e+02 Score=28.29 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 696 NEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
+..++..++.+...|+...+.-.+.++...|+.++|.+..+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444555555556554444445555555666666666666666666
No 493
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=30.88 E-value=2.4e+02 Score=25.68 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHH
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 590 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg 590 (760)
-+..+|....+.+++-.++-.|++|+.+..+- . -... ..+++-+ .-......+|+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~------~--~~~~-----------~el~dll------~i~VisCHNLA 57 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEI------D--ESNE-----------IELEDLL------TISVISCHNLA 57 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh------c--cccc-----------ccHHHHH------HHHHHHHhhHH
Confidence 35678888888899999988888888642111 0 0000 0111110 01156778899
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 004336 591 SVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+..+|+.+=.+++++-|-+
T Consensus 58 ~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 58 DFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 999999999999988877655
No 494
>PF04222 DUF416: Protein of unknown function (DUF416); InterPro: IPR007338 This is a bacterial family of uncharacterised proteins.; PDB: 2Q9R_A 3F7C_A.
Probab=30.69 E-value=40 Score=33.24 Aligned_cols=58 Identities=26% Similarity=0.372 Sum_probs=37.8
Q ss_pred HHHHHHhhCCccc--chhhHHHH-----HHHh---hccchhHHHHHHHHHhhcccccccchhhhhhhh
Q 004336 70 QIHEELELCPLQE--RSSLYLLQ-----FQVF---KGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWL 127 (760)
Q Consensus 70 ~~~~~~~~~~~~~--~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (760)
.+|.||+.=++-. ...++|-+ |++| -|.||++.+|+.|-..|+.=+.-..|+=|..||
T Consensus 2 ~~~~rl~~L~~wqq~~F~aaLcERM~PNY~lF~e~t~~gd~~~~r~~LdlvWe~L~~k~~kinfe~qL 69 (191)
T PF04222_consen 2 PIFKRLEKLEPWQQLAFMAALCERMYPNYQLFCEVTEFGDAKVYRNILDLVWEYLTVKKAKINFERQL 69 (191)
T ss_dssp -HHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHHHCT-S-HHHHHHHHHHHHHHCCSTT-GGGHHHHH
T ss_pred cHhHHHHhCChHHHHHHHHHHHHHhhhhHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 3566666654422 22333333 3444 599999999999999999888878899998887
No 495
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.96 E-value=1.2e+02 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=18.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHh
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILT 411 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~ 411 (760)
|..+...|.-.-..|++++|+.+|.+++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444455588888888887654
No 496
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.22 E-value=1.1e+02 Score=27.84 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=19.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 721 FHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 721 ~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+...|++++|...|-+|+...|+..+.+.+|.+
T Consensus 72 ~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 72 QLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3344466666666666666666666666655554
No 497
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=28.41 E-value=4.5e+02 Score=23.81 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=46.4
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 513 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~ 513 (760)
...+.......++ +..+..++.++..+..+..+|.+. +..+.++.++. .++. --.-
T Consensus 18 ~~~~~~~~l~~yL------------------e~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~-yd~~ 73 (140)
T smart00299 18 EKRNLLEELIPYL------------------ESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH-YDIE 73 (140)
T ss_pred HhCCcHHHHHHHH------------------HHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc-CCHH
Confidence 3456778888888 888888787888888888888765 45566666653 1111 1111
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
..+.+..+.+-++++.-.+.+
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 233444455555555555544
No 498
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=27.61 E-value=6.5e+02 Score=26.44 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLR 487 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~ 487 (760)
..++.-++..|++..++..+|..+..
T Consensus 64 ~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 64 AVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 44577788899999999998886654
No 499
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=27.37 E-value=2.4e+02 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYR 417 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~ 417 (760)
...+|..+-..|..--..-.|.+|++.+.+++...|+.+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 344444444445222222233344444445666778875
No 500
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=27.27 E-value=3.6e+02 Score=24.64 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKIRHT-----------------RAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----------------~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
+..+|....+.+++-.++-.|++|+.+... ....+||..+..+|+.+-.+++++-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 456788889999999999999999873111 24557888888888887777777643
Done!